
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/HNSC-TP/8279332/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/HNSC-TP/8142868/HNSC-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=HNSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=HNSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/HNSC-TP/8142868/HNSC-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/HNSC-TP/8279332/transformed.cor.cli.txt"

nPatients in clinical file=410, in cluster file=511, common to both=404
[1]  80 404
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               53               351 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               53               351 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               94               310 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               94               310 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               72               332 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               72               332 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               57               347 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               57               347 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               67               337 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               67               337 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              205               199 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              205               199 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               34               370 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               34               370 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               29               375 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               29               375 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              155               249 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              155               249 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               51               353 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               51               353 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               62               342 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               62               342 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               46               358 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               46               358 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              148               256 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              148               256 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              101               303 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              101               303 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              113               291 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              113               291 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              235               169 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              235               169 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               82               322 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               82               322 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
              109               295 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
              109               295 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                27                377 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                27                377 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                26                378 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                26                378 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                54                350 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                54                350 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                56                348 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                56                348 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               114                290 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               114                290 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                68                336 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                68                336 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                48                356 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                48                356 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
               120                284 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
               120                284 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                62                342 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                62                342 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                81                323 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                81                323 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                85                319 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                85                319 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                51                353 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                51                353 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                67                337 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                67                337 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                92                312 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                92                312 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                36                368 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                36                368 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                38                366 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                38                366 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                56                348 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                56                348 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               148                256 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               148                256 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               156                248 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               156                248 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                27                377 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                27                377 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                88                316 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                88                316 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               70               334 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               70               334 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               45               359 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               45               359 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               31               373 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               31               373 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               27               377 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               27               377 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               34               370 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               34               370 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              234               170 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              234               170 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               54               350 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               54               350 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              153               251 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              153               251 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              116               288 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              116               288 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               39               365 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               39               365 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              129               275 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              129               275 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               55               349 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               55               349 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               56               348 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               56               348 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               19               385 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               19               385 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               36               368 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               36               368 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              148               256 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              148               256 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               25               379 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               25               379 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              138               266 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              138               266 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               63               341 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               63               341 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               125                279 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               125                279 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                84                320 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                84                320 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               105                299 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               105                299 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               129                275 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               129                275 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                27                377 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                27                377 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                23                381 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                23                381 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               127                277 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               127                277 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                36                368 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                36                368 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                74                330 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                74                330 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                47                357 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                47                357 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                59                345 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                59                345 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                90                314 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                90                314 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                30                374 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                30                374 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                83                321 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                83                321 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               171                233 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               171                233 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                77                327 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                77                327 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                65                339 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                65                339 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                42                362 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                42                362 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                25                379 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                25                379 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               153                251 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               153                251 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                62                342 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                62                342 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               63               341 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               63               341 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "RADIATIONTHERAPY"                      
[15] "HISTOLOGICALTYPE"                      
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NUMBERPACKYEARSSMOKED"                 
[18] "YEAROFTOBACCOSMOKINGONSET"             
[19] "NUMBER.OF.LYMPH.NODES"                 
[20] "GLEASON_SCORE"                         
[21] "PSA_VALUE"                             
[22] "DAYS_TO_PSA"                           
[23] "BATCHNUMBER"                           

Input Data has 23 rows and 404 columns.

[1] "Batch" "23"   
[1] "Last Follow UP"
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
         462          283          415           NA          276          248 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
         722         1288         1762          520          725          623 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
        1636         1747          190          644          451           63 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA 
         384          113          236          895          513          351 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 
         216           NA          182           NA          187         2878 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
         278          140          133          558          310          536 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
         423          687          638         1153          428          436 
TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
        2161          624            5            4          799          721 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
         485          142          452          613          392          462 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
         993          642          642          395          541           NA 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
        1055          811         1268           NA          488          512 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
         173           NA         1081           NA           NA           NA 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
          NA           NA           NA           NA          683          290 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
         448          424          629          433          316          629 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
          45          391           98           NA          202          424 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
         224          318          611          394          119           NA 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U 
         432          398           46          447          225          526 
TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 
         484          348          175          367           NA         1466 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
        1207          654           NA         1660         1422          896 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
        1399          317          341          129          870           NA 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
        1000         1057          985           NA           NA           NA 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
         815         1461         1378         1007          509         1309 
TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CA 
         901          877          968           NA          613           NA 
TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI 
         545          548          393          391          303          608 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
        2562          358         1663         1152          799         1777 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
        1521           NA         1050         1125           NA          514 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
          NA          362          311          345          354          234 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
         379          350          479           NA         1435         1191 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
        1440         1245           NA          105           NA          759 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
         889           30          972           NA         1036           NA 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
         796           NA          997         1430           NA          392 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
         907          913          946          908          898          930 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
         216          156          181         1077          911         1472 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
        4241          522         3930         3295         1438          584 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
         546         3270         2886         2327         2784         2437 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
         519          406          701         2641         1478         1840 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
         215         1315         1665          641         1899           NA 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
          NA           NA           NA         3835           NA           NA 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
          NA         3837         3381           NA           NA           NA 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
          NA           NA         3497         1724           NA         1444 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
        1095          954          797           NA           NA           NA 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
          NA           NA           NA           NA         1099           NA 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
          NA           NA           NA           NA         4335           NA 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD 
          NA           NA          851           NA           NA           NA 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
         750          317          321          237          828           NA 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
         773          292          701           77          491          154 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
         568          106          128          112          104         1778 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
        1081          516         1030          548           NA          575 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
         775          622          299          369          368          324 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I 
         340          564          490          658           15           92 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A622 
         585            3          384           14           13           NA 
TCGA-F7-A623 TCGA-F7-A624 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
           6           NA          407           58          133            2 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7831 TCGA-HD-7832 TCGA-HD-7917 TCGA-HD-8224 
           5           25           NA           NA           37           55 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 
          44           24           25           11           49           10 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
          33         1057          485          122          441          588 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L 
         360          412           NA          440           NA          351 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
         360          224          210           14           34          392 
TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 
          56          111          112          254          910           NA 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 
        1652          721           NA         1120           NA          578 
TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 
        1917           NA           NA           NA           NA           NA 
TCGA-P3-A6T8 TCGA-QK-A64Z 
         400          553 
Variable 1:'AGE':	nDistinctValues=60,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=144,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=258,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=22,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=51,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 14:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBERPACKYEARSSMOKED':	nDistinctValues=81,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=56,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=25,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 21:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 23:'BATCH.NUMBER':	nDistinctValues=25,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "NEOPLASM.DISEASESTAGE"                 
 [3] "PATHOLOGY.T.STAGE"                     
 [4] "PATHOLOGY.N.STAGE"                     
 [5] "PATHOLOGY.M.STAGE"                     
 [6] "GENDER"                                
 [7] "HISTOLOGICAL.TYPE"                     
 [8] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [9] "NUMBERPACKYEARSSMOKED"                 
[10] "YEAROFTOBACCOSMOKINGONSET"             
[11] "NUMBER.OF.LYMPH.NODES"                 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 404 columns, 1 survival variables, and 11 non-survival variables.
AGE, nv=60, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=5, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 39 103  84 128 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 39 103  84 128 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T1  T2  T3  T4 
 39 103  84 128 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 39 103  84 128 
PATHOLOGY.N.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
134  52 125   7 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
134  52 125   7 
$ClinVariableName
[1] "PATHOLOGY.N.STAGE"

$Table
vv
 N0  N1  N2  N3 
134  52 125   7 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
134  52 125   7 
PATHOLOGY.M.STAGE, nv=2, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=81, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=56, binary=FALSE, numeric=TRUE
NUMBER.OF.LYMPH.NODES, nv=25, binary=FALSE, numeric=TRUE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN MUTATED    27  26
  1P GAIN WILD-TYPE 220 126
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               53               346 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               26               126 
$`1P GAIN MUTATED`
TCGA-BA-5149 TCGA-BA-5555 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-8596 
        8.15        17.10        14.83        12.62         3.72        71.05 
TCGA-BB-8601 TCGA-C9-A47Z TCGA-CN-4727 TCGA-CN-4739 TCGA-CN-5359 TCGA-CN-6020 
       20.52         0.16        14.86        34.68        12.39         3.22 
TCGA-CN-6989 TCGA-CQ-7067 TCGA-CR-6478 TCGA-CR-6482 TCGA-CR-7379 TCGA-CR-7388 
       20.09        16.73         6.02        11.34        34.06        27.06 
TCGA-CV-5431 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6933 
       17.16        76.50        80.12        86.83        60.49        90.12 
TCGA-CV-6937 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7235 
       20.52       111.16        18.81         5.26         1.84        56.68 
TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7422 
        2.10        18.41        35.54        22.85         0.07        34.09 
TCGA-CV-A461 TCGA-CV-A6JE TCGA-CX-7082 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-7588 
       67.86        24.66        10.42        35.54        16.96        14.04 
TCGA-DQ-7596 TCGA-F7-8298 TCGA-H7-7774 TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66T 
       11.18        16.11        13.38         5.29        11.84         6.90 
TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T3 
       29.92        15.78        36.82        47.01        18.97 

$`1P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.19         9.30        13.64        37.28         9.07        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       42.35        57.93        23.84        20.48        53.79        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 
        6.25        21.17         2.07         7.76        29.42        16.87 
TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 
       11.54         7.10         5.69         5.98         7.82         6.15 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
       94.62         9.14         4.60         4.37        18.35        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.62        13.91        22.59        20.98        37.91        14.07 
TCGA-BB-7872 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       14.33         0.13        26.27        23.70        15.95         4.67 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       20.15        12.89        15.19        32.65        21.11        21.11 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.99        17.79        14.33        26.66        41.69        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
       16.04        16.83         5.69        35.54         8.32        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        22.45 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.53        14.73        13.94        20.68        14.24        10.39 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
       20.68         1.48        12.85         9.07         6.64        13.94 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        7.36        10.45        12.95         3.91         3.68        14.20 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V 
       13.08         1.51        14.70         7.40        17.29        15.91 
TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 
       11.44         5.75        12.07         2.70        48.20        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        54.58        46.75        29.46        45.99 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.24        28.60        32.38        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.38        13.25         4.24        14.99        26.79 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 
       48.03        45.30        33.11        43.04        29.62        28.83 
TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE 
       31.82        11.61        20.15        17.92        18.02        12.92 
TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       12.85         9.96        19.99        84.23        11.77        54.67 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.27        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 
       36.99        18.54        16.90        11.90        10.22        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.69        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.16        47.34        40.93        35.84         3.45         3.09 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7380 
       24.95        29.23         0.99        31.96         9.17        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7390 
       26.17        17.13        32.78        47.01        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.58         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.95        35.41        29.95        48.39       139.43 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95       107.51 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 
       94.88        91.53        17.06        13.35        23.05        48.59 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        54.74        21.07        62.43         9.60 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        2.14         9.70         5.46         4.73        21.90        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.38        15.09 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.08         6.08        53.95        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.42        28.34         2.50         4.14        64.83       126.15 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
       12.66         7.99         9.01        52.31        12.92        21.80 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       71.21        10.75       114.97         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.36        26.20        18.97        17.13        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 
       11.87        47.97        36.13        57.47        17.85       210.97 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7423 
       89.33         9.67         0.46        25.08        25.94       100.57 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.89        56.48       156.49        54.94         3.52        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.76         7.17       142.52        16.64         6.38 
TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A6JD TCGA-CX-7085 TCGA-CX-7086 
       22.19        27.98       169.38         5.98        10.55         7.79 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        25.41         9.60        23.05         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
       16.14         5.06        18.67         3.48         4.21         3.68 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 
        3.42        58.45        33.86        18.02        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       20.45         9.83        12.13        12.10        10.65        18.54 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V 
       21.63         0.49         3.02        19.23         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43         0.20         1.91         4.37         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.22         1.81         1.45         0.79 
TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 
        0.82         0.36         1.61         0.33         1.08        34.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H 
       15.95         4.01        14.50        19.33        11.84        13.55 
TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61L TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X 
        0.07        14.47        11.54         7.36         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5QA 
       12.89         1.84         3.65         3.68         8.35        54.31 
TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T4 TCGA-P3-A6T5 
       23.70        10.85        19.00        63.02         2.04        29.00 
TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       12.99        16.01        13.15        18.18 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             0.07              0.07 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           111.16            210.97 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            17.16             15.95 
[1] "0.1 - 111.2 (17.2)" "0.1 - 211.0 (15.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D1V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  1P GAIN MUTATED         3        6         6        26         1
  1P GAIN WILD-TYPE      21       56        60       163         7
D1V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1P GAIN MUTATED     3  12  12  15
  1P GAIN WILD-TYPE  36  91  72 113
D1V4, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  T1               3                36
  T2              12                91
  T3              12                72
  T4              15               113
                   vv
clus                 N0  N1  N2  N3
  1P GAIN MUTATED    11   8  17   1
  1P GAIN WILD-TYPE 123  44 108   6
D1V5, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  N0              11               123
  N1               8                44
  N2              17               108
  N3               1                 6
D1V6, binary
                   cls
clus                 0  1
  1P GAIN MUTATED    6  9
  1P GAIN WILD-TYPE 97 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      6    9
  1P GAIN WILD-TYPE   97   34
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  M0               6                97
  MX               9                34
D1V7, binary
                   cls
clus                  0   1
  1P GAIN MUTATED    18  35
  1P GAIN WILD-TYPE  98 253
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     18   35
  1P GAIN WILD-TYPE   98  253
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE              18                98
  MALE                35               253
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  1P GAIN MUTATED                                      50
  1P GAIN WILD-TYPE                                   347
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  1P GAIN MUTATED                                                             1
  1P GAIN WILD-TYPE                                                           0
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  1P GAIN MUTATED                                                     2
  1P GAIN WILD-TYPE                                                   4
D1V8, multiclass
                                                             clus
vv                                                            1P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    50
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       2
                                                             clus
vv                                                            1P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     347
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D1V9, binary
                   cls
clus                  0   1
  1P GAIN MUTATED    11  42
  1P GAIN WILD-TYPE  68 283
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     11   42
  1P GAIN WILD-TYPE   68  283
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO               11                68
  YES              42               283
D1V10, continuous
D1V11, continuous
D1V12, continuous

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN MUTATED    54  39
  1Q GAIN WILD-TYPE 193 113
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               93               306 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               39               113 
$`1Q GAIN MUTATED`
TCGA-BA-5555 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4224 
       17.10        14.83         2.07        12.62         7.76         9.14 
TCGA-BB-4227 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4727 
        4.37        37.91        14.07        71.05        20.52        14.86 
TCGA-CN-4728 TCGA-CN-4739 TCGA-CN-5359 TCGA-CN-5367 TCGA-CN-5374 TCGA-CN-6010 
       20.15        34.68        12.39        11.57         9.53        14.73 
TCGA-CN-6013 TCGA-CN-6020 TCGA-CN-6023 TCGA-CN-6997 TCGA-CN-A63U TCGA-CQ-7064 
       14.24         3.22        13.94        13.08        17.29        45.30 
TCGA-CQ-7067 TCGA-CQ-A4C9 TCGA-CQ-A4CD TCGA-CQ-A4CI TCGA-CR-6478 TCGA-CR-6482 
       16.73        20.15        18.02        19.99         6.02        11.34 
TCGA-CR-7370 TCGA-CR-7379 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CV-5430 
        3.45        34.06        27.06        12.89        29.82       139.43 
TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5977 
       17.16       108.33       107.51        76.50        80.12        60.49 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        7.07        43.23        90.12         9.70         5.46        20.52 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7095 
       26.43        11.24        30.08         4.14       111.16        18.81 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7235 TCGA-CV-7243 TCGA-CV-7250 
        5.26         1.84        71.21        56.68        31.36        95.34 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7409 
       47.97         2.10        36.13        18.41        35.54        17.85 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A461 
        0.07        34.09       100.57        16.64        22.19        67.86 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7086 TCGA-D6-6827 TCGA-DQ-5625 TCGA-DQ-5629 
       24.66        10.42         7.79        18.67        35.54        16.96 
TCGA-DQ-7589 TCGA-DQ-7596 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7754 TCGA-HD-7917 
       18.90        11.18        16.11        13.38         0.82         1.22 
TCGA-HL-7533 TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61O TCGA-KU-A66T TCGA-P3-A5Q5 
       34.75        13.55         0.07        11.84         6.90        29.92 
TCGA-P3-A5Q6 TCGA-P3-A6SW TCGA-P3-A6T5 
       15.78        36.82        29.00 

$`1Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       23.74        42.35        57.93        23.84        20.48        53.79 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6873 TCGA-BA-A4IF TCGA-BA-A6D8 
       57.44         6.25        21.17         3.72        29.42        16.87 
TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 
       11.54         7.10         5.69         5.98         7.82         6.15 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
       94.62         4.60        18.35        10.19        17.62        13.91 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7872 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       22.59        20.98        14.33         0.16         0.13        26.27 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
       23.70        15.95         4.67        12.89        15.19        32.65 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4740 
       21.11        21.11        12.99        17.79        14.33        26.66 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 
       41.69        13.05        16.04        16.83         5.69        35.54 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 
        8.32        16.21        11.54        11.84        12.49         8.52 
TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       22.45        13.94        20.68        10.39        20.68         1.48 
TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
       12.85         9.07         6.64         7.36        10.45        20.09 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A49B 
       12.95         3.91         3.68        14.20         1.51        14.70 
TCGA-CN-A63T TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 
        7.40        15.91        11.44         5.75        12.07         2.70 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.20        39.68        21.50         2.93        54.58        46.75 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        45.99        10.42        11.21         4.24        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.38        32.88        34.75        32.38        13.25         4.24 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 
       14.99        26.79        48.03        33.11        43.04        29.62 
TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4CB TCGA-CQ-A4CE TCGA-CQ-A4CG 
       28.83        31.82        11.61        17.92        12.92        12.85 
TCGA-CQ-A4CH TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
        9.96        84.23        11.77        54.67        37.87        26.27 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.54 
TCGA-CR-6477 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       16.90        11.90        10.22        11.64         7.69        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.16        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       40.93        35.84         3.09        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96         9.17        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       47.01        30.02        31.10        29.85        29.52        30.58 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.95        35.41        29.95        48.39 
TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5443 
      129.21        47.28        19.20        17.95        94.88        91.53 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-6003 
       17.06        13.35        23.05        86.83        48.59        54.74 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6938 TCGA-CV-6939 
       21.07        62.43         9.60         2.14         4.73        21.90 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6952 
      126.08        19.79        12.03        42.38        15.09         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.95        65.82        10.98         7.13         8.42        28.34 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
        2.50        64.83       126.15        12.66         7.99         9.01 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 
       52.31        12.92        21.80        10.75       114.97         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 
       47.47        36.00        26.20        18.97        17.13         4.96 
TCGA-CV-7253 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       11.87        57.47       210.97        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
       22.85        25.08        25.94        14.89        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.94         3.52        16.27        84.49        19.76         7.17 
TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A6JD TCGA-CX-7085 
      142.52         6.38        27.98       169.38         5.98        10.55 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        25.41         9.60        23.05         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
       16.14         5.06         3.48         4.21         3.68         3.42 
TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 
       58.45        33.86        18.02        14.04        25.48        20.45 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8489 
        9.83        12.13        12.10        10.65        18.54        21.63 
TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W 
        0.49         3.02        19.23         0.10        12.62         0.46 
TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.43         0.20         1.91         4.37         0.07         0.16 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 
        1.81         1.45         0.79         0.82         0.36         1.61 
TCGA-HD-A634 TCGA-HD-A6I0 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
        0.33         1.08        15.95         4.01        14.50        19.33 
TCGA-IQ-A61G TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-KU-A66S TCGA-MT-A51W 
       11.84        14.47         5.29        11.54         7.36         0.46 
TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 
        1.12        12.89         1.84         3.65         3.68         8.35 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 
       54.31        23.70        10.85        47.01        19.00        63.02 
TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       18.97         2.04        12.99        16.01        13.15        18.18 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.07              0.07 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           139.43            210.97 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            17.29             15.83 
[1] "0.1 - 139.4 (17.3)" "0.1 - 211.0 (15.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D2V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  1Q GAIN MUTATED         4       12        12        48         3
  1Q GAIN WILD-TYPE      20       50        54       141         5
D2V3, multiclass
                   vv
clus                T1 T2 T3 T4
  1Q GAIN MUTATED    5 25 16 33
  1Q GAIN WILD-TYPE 34 78 68 95
D2V4, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  T1               5                34
  T2              25                78
  T3              16                68
  T4              33                95
                   vv
clus                 N0  N1  N2  N3
  1Q GAIN MUTATED    21  12  32   3
  1Q GAIN WILD-TYPE 113  40  93   4
D2V5, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  N0              21               113
  N1              12                40
  N2              32                93
  N3               3                 4
D2V6, binary
                   cls
clus                 0  1
  1Q GAIN MUTATED   14 10
  1Q GAIN WILD-TYPE 89 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     14   10
  1Q GAIN WILD-TYPE   89   33
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  M0              14                89
  MX              10                33
D2V7, binary
                   cls
clus                  0   1
  1Q GAIN MUTATED    25  69
  1Q GAIN WILD-TYPE  91 219
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     25   69
  1Q GAIN WILD-TYPE   91  219
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE              25                91
  MALE                69               219
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  1Q GAIN MUTATED                                      90
  1Q GAIN WILD-TYPE                                   307
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  1Q GAIN MUTATED                                                             1
  1Q GAIN WILD-TYPE                                                           0
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  1Q GAIN MUTATED                                                     3
  1Q GAIN WILD-TYPE                                                   3
D2V8, multiclass
                                                             clus
vv                                                            1Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    90
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       3
                                                             clus
vv                                                            1Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     307
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         3
D2V9, binary
                   cls
clus                  0   1
  1Q GAIN MUTATED    22  72
  1Q GAIN WILD-TYPE  57 253
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     22   72
  1Q GAIN WILD-TYPE   57  253
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO               22                57
  YES              72               253
D2V10, continuous
D2V11, continuous
D2V12, continuous

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN MUTATED    43  29
  2P GAIN WILD-TYPE 204 123
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               72               327 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               29               123 
$`2P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-A4IF TCGA-BB-8596 TCGA-CN-4727 TCGA-CN-4742 
        9.30        17.10        29.42        71.05        14.86        13.05 
TCGA-CN-5356 TCGA-CN-5359 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6023 
       16.83        12.39         9.53        14.73        20.68        13.94 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-A63T TCGA-CQ-5329 
       10.45        20.09         3.91         3.68         7.40        46.75 
TCGA-CQ-5332 TCGA-CQ-6225 TCGA-CR-5247 TCGA-CR-6477 TCGA-CR-7365 TCGA-CR-7372 
       10.42        13.25        11.77        16.90        39.16        24.95 
TCGA-CR-7380 TCGA-CR-7383 TCGA-CR-7398 TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5440 
       19.92        17.13         5.13         5.95       139.43       107.51 
TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6950 
       90.12        20.52        21.90        26.43        11.24        15.09 
TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7103 TCGA-CV-7178 TCGA-CV-7235 
        4.14       126.15       111.16        52.31        71.21        56.68 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7250 TCGA-CV-7254 
       36.00        31.36        26.20        18.97        95.34        47.97 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7409 TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7422 
       36.13        18.41        17.85        22.85         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7429 TCGA-CV-7435 TCGA-CV-7437 TCGA-CX-7086 TCGA-CX-7219 
      100.57         3.52       142.52        16.64         7.79        27.22 
TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-8569 TCGA-D6-A4ZB TCGA-DQ-5629 TCGA-DQ-7589 
       25.41        23.05         4.21         3.42        16.96        18.90 
TCGA-DQ-7592 TCGA-F7-A620 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-IQ-A61E TCGA-IQ-A61H 
        9.83         0.43         1.61         1.08        19.33        13.55 

$`2P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.19        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       42.35        57.93        23.84        20.48        53.79        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        6.25        21.17        14.83         2.07        12.62         3.72 
TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
        7.76        16.87        11.54         7.10         5.69         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.82         6.15        94.62         9.14         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.35        10.19        17.62        13.91        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 
       37.91        14.07        14.33        20.52         0.16         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 
       26.27        23.70        15.95         4.67        20.15        12.89 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       15.19        32.65        21.11        21.11        12.99        17.79 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5358 
       14.33        34.68        26.66        41.69        16.04         5.69 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       35.54         8.32        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 
       12.49         8.52        22.45        13.94        14.24        10.39 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       20.68         1.48        12.85         3.22         9.07         6.64 
TCGA-CN-6024 TCGA-CN-6992 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
        7.36        12.95        14.20        13.08         1.51        14.70 
TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 
       17.29        15.91        11.44         5.75        12.07         2.70 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 
       48.20        39.68        21.50         2.93        54.58        29.46 
TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       45.99        11.21         4.24        28.60        32.38        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       34.75        32.38         4.24        14.99        26.79        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 
       45.30        33.11        16.73        43.04        29.62        28.83 
TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE 
       31.82        11.61        20.15        17.92        18.02        12.92 
TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       12.85         9.96        19.99        84.23        54.67        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.27        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       18.54         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.69        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 
       47.34        40.93        35.84         3.45         3.09        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7385 
        0.99        31.96         9.17        34.06        26.17        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.06        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 TCGA-CR-7402 
       29.85        29.52        30.58         7.10        35.41        29.95 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
       48.39        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       17.95        94.88        76.50        91.53        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        23.05        86.83        48.59        60.49         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 
       43.23        54.74        21.07        62.43         9.60         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        9.70         5.46         4.73       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       42.38        30.08         6.08        53.95        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7095 
        7.13         8.42        28.34         2.50        64.83        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 
       12.66         7.99         9.01         5.26         1.84        12.92 
TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7248 
       21.80        10.75       114.97         4.73        47.47        17.13 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 
        4.96        11.87         2.10        57.47        35.54       210.97 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7424 
       89.33         9.67         0.46        25.08        25.94        14.89 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
       56.48       156.49        54.94        16.27        84.49        19.76 
TCGA-CV-7434 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 
        7.17         6.38        22.19        27.98       169.38        67.86 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6517 
        5.98        24.66        10.42        10.55        13.25         9.60 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 
        2.53        16.14         5.06        18.67         3.48         3.68 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 
       58.45        35.54        33.86        18.02        14.04        25.48 
TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 
       20.45        12.13        12.10        10.65        11.18        18.54 
TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S 
       16.11        21.63         0.49         3.02        19.23         0.10 
TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
       12.62         0.46         0.20        13.38         1.91         4.37 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.22         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A634 TCGA-HL-7533 TCGA-IQ-7630 
        0.79         0.82         0.36         0.33        34.75        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61G TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K 
        4.01        14.50        11.84         0.07        14.47         5.29 
TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X 
       11.54        11.84         7.36         6.90         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 
       12.89         1.84         3.65         3.68         8.35        29.92 
TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX 
       15.78        54.31        23.70        10.85        36.82        47.01 
TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 
       19.00        63.02        18.97         2.04        29.00        12.99 
TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       16.01        13.15        18.18 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.07              0.07 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           142.52            210.97 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            18.13             15.78 
[1] "0.1 - 142.5 (18.1)" "0.1 - 211.0 (15.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D3V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  2P GAIN MUTATED         4       13        13        34         2
  2P GAIN WILD-TYPE      20       49        53       155         6
D3V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2P GAIN MUTATED     4  17  19  26
  2P GAIN WILD-TYPE  35  86  65 102
D3V4, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  T1               4                35
  T2              17                86
  T3              19                65
  T4              26               102
                   vv
clus                 N0  N1  N2  N3
  2P GAIN MUTATED    30   7  21   1
  2P GAIN WILD-TYPE 104  45 104   6
D3V5, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  N0              30               104
  N1               7                45
  N2              21               104
  N3               1                 6
D3V6, binary
                   cls
clus                 0  1
  2P GAIN MUTATED   12  7
  2P GAIN WILD-TYPE 91 36
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     12    7
  2P GAIN WILD-TYPE   91   36
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  M0              12                91
  MX               7                36
D3V7, binary
                   cls
clus                  0   1
  2P GAIN MUTATED    14  58
  2P GAIN WILD-TYPE 102 230
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     14   58
  2P GAIN WILD-TYPE  102  230
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE              14               102
  MALE                58               230
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  2P GAIN MUTATED                                      72
  2P GAIN WILD-TYPE                                   325
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  2P GAIN MUTATED                                                             0
  2P GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  2P GAIN MUTATED                                                     0
  2P GAIN WILD-TYPE                                                   6
D3V8, multiclass
                                                             clus
vv                                                            2P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    72
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            2P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     325
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         6
D3V9, binary
                   cls
clus                  0   1
  2P GAIN MUTATED    15  57
  2P GAIN WILD-TYPE  64 268
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     15   57
  2P GAIN WILD-TYPE   64  268
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO               15                64
  YES              57               268
D3V10, continuous
D3V11, continuous
D3V12, continuous

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN MUTATED    32  25
  2Q GAIN WILD-TYPE 215 127
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               57               342 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               25               127 
$`2Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-A4IF TCGA-BB-8596 TCGA-CN-4727 TCGA-CN-4742 TCGA-CN-5356 
        9.30        29.42        71.05        14.86        13.05        16.83 
TCGA-CN-5359 TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6994 TCGA-CN-A63T TCGA-CQ-5329 
       12.39         9.53        20.68         3.91         7.40        46.75 
TCGA-CQ-5332 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CR-5247 TCGA-CR-6477 
       10.42        32.38        13.25        14.99        11.77        16.90 
TCGA-CR-7365 TCGA-CR-7383 TCGA-CV-5430 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-6940 
       39.16        17.13       139.43       108.33       107.51        26.43 
TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7103 TCGA-CV-7235 
       11.24        15.09         4.14       111.16        52.31        56.68 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7261 
       36.00        26.20        18.97        95.34        47.97        36.13 
TCGA-CV-7263 TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7429 
       18.41        22.85         0.07        34.09       100.57         3.52 
TCGA-CV-7435 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6823 TCGA-D6-8569 TCGA-D6-A4ZB 
      142.52         7.79        27.22        23.05         4.21         3.42 
TCGA-DQ-5629 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7592 TCGA-HD-A6I0 TCGA-IQ-A61E 
       16.96        14.04        18.90         9.83         1.08        19.33 
TCGA-IQ-A61H TCGA-MT-A67D TCGA-P3-A6T5 
       13.55         1.84        29.00 

$`2Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.19        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       42.35        57.93        17.10        23.84        20.48        53.79 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         6.25        21.17        14.83         2.07        12.62 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD 
        3.72         7.76        16.87        11.54         7.10         5.69 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.98         7.82         6.15        94.62         9.14         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.35        10.19        17.62        13.91        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8601 TCGA-C9-A47Z 
       20.98        37.91        14.07        14.33        20.52         0.16 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 
        0.13        26.27        23.70        15.95         4.67        20.15 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
       12.89        15.19        32.65        21.11        21.11        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5355 
       17.79        14.33        34.68        26.66        41.69        16.04 
TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        5.69        35.54         8.32        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 
       11.57        12.49         8.52        22.45        14.73        13.94 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
       14.24        10.39        20.68         1.48        12.85         3.22 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.64        13.94         7.36        10.45        20.09 
TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
       12.95         3.68        14.20        13.08         1.51        14.70 
TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 
       17.29        15.91        11.44         5.75        12.07         2.70 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 
       48.20        39.68        21.50         2.93        54.58        29.46 
TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       45.99        11.21         4.24        28.60        32.38        32.88 
TCGA-CQ-6223 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
       34.75         4.24        26.79        48.03        45.30        33.11 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 
       16.73        43.04        29.62        28.83        31.82        11.61 
TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH 
       20.15        17.92        18.02        12.92        12.85         9.96 
TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       19.99        84.23        54.67        37.87        26.27        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6478 
       50.01        39.52        34.52        36.99        18.54         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.69        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 
       11.51        15.75         9.27        47.18        47.34        40.93 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.45         3.09        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 
       31.96         9.17        34.06        19.92        26.17        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.06        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.58         7.10         5.13         5.95 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 
       35.41        29.95        48.39        17.16       129.21        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       19.20        17.95        94.88        76.50        91.53        80.12 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        23.05        86.83        48.59        60.49 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        54.74        21.07        62.43         9.60 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.12         2.14         9.70         5.46        20.52         4.73 
TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 
       21.90       126.08        19.79        12.03        42.38        30.08 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.95        65.82        10.98         7.13         8.42 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 
       28.34         2.50        64.83       126.15        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         5.26         1.84        12.92        21.80 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 
       71.21        10.75       114.97         4.73        47.47        31.36 
TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7406 TCGA-CV-7407 
       17.13         4.96        11.87         2.10        57.47        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 
       17.85       210.97        89.33         9.67         0.46        25.08 
TCGA-CV-7418 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 
       25.94        14.89        56.48       156.49        54.94        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       84.49        19.76         7.17        16.64         6.38        22.19 
TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 
       27.98       169.38        67.86         5.98        24.66        10.42 
TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 
       10.55        13.25        25.41         9.60         2.53        16.14 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 
        5.06        18.67         3.48         3.68        58.45        35.54 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 
       33.86        18.02        25.48        20.45        12.13        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G 
       10.65        11.18        18.54        16.11        21.63         0.49 
TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 
        3.02        19.23         0.10        12.62         0.46         0.43 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.20        13.38         1.91         4.37         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.22         1.81         1.45         0.79         0.82 
TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        0.36         1.61         0.33        34.75        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61G TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L 
       14.50        11.84         0.07        14.47         5.29        11.54 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
       11.84         7.36         6.90         0.46         1.12        12.89 
TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA 
        3.65         3.68         8.35        29.92        15.78        54.31 
TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 
       23.70        10.85        36.82        47.01        19.00        63.02 
TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       18.97         2.04        12.99        16.01        13.15        18.18 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.07              0.07 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           142.52            210.97 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            18.41             15.95 
[1] "0.1 - 142.5 (18.4)" "0.1 - 211.0 (15.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D4V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  2Q GAIN MUTATED         2       10        10        28         0
  2Q GAIN WILD-TYPE      22       52        56       161         8
D4V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2Q GAIN MUTATED     3  14  13  20
  2Q GAIN WILD-TYPE  36  89  71 108
D4V4, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  T1               3                36
  T2              14                89
  T3              13                71
  T4              20               108
                   vv
clus                 N0  N1  N2  N3
  2Q GAIN MUTATED    25   4  16   0
  2Q GAIN WILD-TYPE 109  48 109   7
D4V5, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  N0              25               109
  N1               4                48
  N2              16               109
  N3               0                 7
D4V6, binary
                   cls
clus                 0  1
  2Q GAIN MUTATED    9  7
  2Q GAIN WILD-TYPE 94 36
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      9    7
  2Q GAIN WILD-TYPE   94   36
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  M0               9                94
  MX               7                36
D4V7, binary
                   cls
clus                  0   1
  2Q GAIN MUTATED    13  44
  2Q GAIN WILD-TYPE 103 244
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED     13   44
  2Q GAIN WILD-TYPE  103  244
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE              13               103
  MALE                44               244
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  2Q GAIN MUTATED                                      57
  2Q GAIN WILD-TYPE                                   340
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  2Q GAIN MUTATED                                                             0
  2Q GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  2Q GAIN MUTATED                                                     0
  2Q GAIN WILD-TYPE                                                   6
D4V8, multiclass
                                                             clus
vv                                                            2Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    57
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            2Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     340
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         6
D4V9, binary
                   cls
clus                  0   1
  2Q GAIN MUTATED    14  43
  2Q GAIN WILD-TYPE  65 282
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED     14   43
  2Q GAIN WILD-TYPE   65  282
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO               14                65
  YES              43               282
D4V10, continuous
D4V11, continuous
D4V12, continuous

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN MUTATED    44  23
  3P GAIN WILD-TYPE 203 129
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               67               332 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               23               129 
$`3P GAIN MUTATED`
TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 
       37.28         9.07        57.93        20.48        57.44         6.25 
TCGA-BA-6873 TCGA-BA-A4IF TCGA-BA-A6DD TCGA-BB-4223 TCGA-BB-4225 TCGA-CN-4723 
        3.72        29.42         5.69        94.62         4.60        23.70 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-5356 TCGA-CN-6013 TCGA-CN-6020 TCGA-CN-6021 
       15.19        32.65        16.83        14.24         3.22         9.07 
TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6994 TCGA-CQ-5323 TCGA-CQ-6223 TCGA-CQ-6225 
       13.94        10.45         3.91        48.20        34.75        13.25 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6474 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       58.42        50.01        18.54        11.64         7.69        12.46 
TCGA-CR-6492 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7389 TCGA-CR-7397 TCGA-CV-5431 
       15.75        39.16        40.93        12.89         7.10        17.16 
TCGA-CV-5442 TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-7097 
       76.50        60.49        21.07        21.90        26.43        12.66 
TCGA-CV-7103 TCGA-CV-7178 TCGA-CV-7236 TCGA-CV-7243 TCGA-CV-7261 TCGA-CV-7407 
       52.31        71.21         4.73        31.36        36.13        35.54 
TCGA-CV-7409 TCGA-CV-7421 TCGA-CV-7437 TCGA-DQ-5624 TCGA-DQ-7595 TCGA-DQ-7596 
       17.85         0.07        16.64        58.45        10.65        11.18 
TCGA-F7-8489 TCGA-F7-A623 TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-A634 
       21.63         0.20         1.22         1.45         0.79         0.33 
TCGA-IQ-A61E TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q6 TCGA-P3-A6SX TCGA-P3-A6T5 
       19.33         3.68         8.35        15.78        47.01        29.00 
TCGA-P3-A6T8 
       13.15 

$`3P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.19         9.30        13.64         8.15        23.74        42.35 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       17.10        23.84        53.79        21.17        14.83         2.07 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DE 
       12.62         7.76        16.87        11.54         7.10         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        7.82         6.15         9.14         4.37        18.35        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.62        13.91        22.59        20.98        37.91        14.07 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       14.33        71.05        20.52         0.16         0.13        26.27 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4733 
       15.95         4.67        14.86        20.15        12.89        21.11 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       21.11        12.99        17.79        14.33        34.68        26.66 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       41.69        13.05        16.04         5.69        12.39        35.54 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.32        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        22.45         9.53        14.73        13.94        20.68 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6024 
       10.39        20.68         1.48        12.85         6.64         7.36 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
       20.09        12.95         3.68        14.20        13.08         1.51 
TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y 
       14.70         7.40        17.29        15.91        11.44         5.75 
TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
       12.07         2.70        39.68        21.50         2.93        54.58 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       46.75        29.46        45.99        10.42        11.21         4.24 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 
       28.60        32.38        32.88        32.38         4.24        14.99 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
       26.79        48.03        45.30        33.11        16.73        43.04 
TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB 
       29.62        28.83        31.82        11.61        20.15        17.92 
TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 
       18.02        12.92        12.85         9.96        19.99        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6471 TCGA-CR-6472 
       11.77        54.67        37.87        26.27        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       36.99        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6491 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 
       11.51         9.27        47.18        47.34        35.84         3.45 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.09        24.95        29.23         0.99        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.06        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       30.58         5.13         5.95        35.41        29.95        48.39 
TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
      139.43       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
      107.51        94.88        91.53        80.12        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       23.05        86.83        48.59         7.07        43.23        54.74 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       62.43         9.60        90.12         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       20.52         4.73        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.38        15.09        30.08         6.08        53.95        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.42        28.34         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 
       64.83       126.15       111.16        18.81         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 
        5.26         1.84        12.92        21.80        10.75       114.97 
TCGA-CV-7235 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       56.68        47.47        36.00        26.20        18.97        17.13 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 
       95.34         4.96        11.87        47.97         2.10        18.41 
TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       57.47       210.97        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.08        25.94        34.09       100.57        14.89        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.94         3.52        16.27        84.49        19.76 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q 
        7.17       142.52         6.38        22.19        27.98       169.38 
TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       67.86         5.98        24.66        10.42        10.55         7.79 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        25.41         9.60        23.05         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
       16.14         5.06        18.67         3.48         4.21         3.68 
TCGA-D6-A4ZB TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        3.42        35.54        16.96        33.86        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        25.48        20.45         9.83        12.13        12.10 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S 
       18.54        16.11         0.49         3.02        19.23         0.10 
TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
       12.62         0.46         0.43        13.38         1.91         4.37 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8635 TCGA-HD-A4C1 
        0.07         0.16         0.82         1.81         0.82         0.36 
TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.61         1.08        34.75        15.95         4.01        14.50 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L 
       11.84        13.55         0.07        14.47         5.29        11.54 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
       11.84         7.36         6.90         0.46         1.12        12.89 
TCGA-MT-A67D TCGA-MT-A67F TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        1.84         3.65        29.92        54.31        23.70        10.85 
TCGA-P3-A6SW TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T6 
       36.82        19.00        63.02        18.97         2.04        12.99 
TCGA-P3-A6T7 TCGA-QK-A64Z 
       16.01        18.18 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             0.07              0.07 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            94.62            210.97 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           16.640            16.125 
[1] "0.1 - 94.6 (16.6)"  "0.1 - 211.0 (16.1)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D5V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  3P GAIN MUTATED         3        9        11        31         1
  3P GAIN WILD-TYPE      21       53        55       158         7
D5V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  3P GAIN MUTATED     7  19   9  21
  3P GAIN WILD-TYPE  32  84  75 107
D5V4, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  T1               7                32
  T2              19                84
  T3               9                75
  T4              21               107
                   vv
clus                 N0  N1  N2  N3
  3P GAIN MUTATED    19  10  22   1
  3P GAIN WILD-TYPE 115  42 103   6
D5V5, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  N0              19               115
  N1              10                42
  N2              22               103
  N3               1                 6
D5V6, binary
                   cls
clus                 0  1
  3P GAIN MUTATED   14  9
  3P GAIN WILD-TYPE 89 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     14    9
  3P GAIN WILD-TYPE   89   34
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  M0              14                89
  MX               9                34
D5V7, binary
                   cls
clus                  0   1
  3P GAIN MUTATED    16  51
  3P GAIN WILD-TYPE 100 237
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     16   51
  3P GAIN WILD-TYPE  100  237
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE              16               100
  MALE                51               237
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  3P GAIN MUTATED                                      66
  3P GAIN WILD-TYPE                                   331
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  3P GAIN MUTATED                                                             0
  3P GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  3P GAIN MUTATED                                                     1
  3P GAIN WILD-TYPE                                                   5
D5V8, multiclass
                                                             clus
vv                                                            3P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    66
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       1
                                                             clus
vv                                                            3P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     331
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         5
D5V9, binary
                   cls
clus                  0   1
  3P GAIN MUTATED    15  52
  3P GAIN WILD-TYPE  64 273
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     15   52
  3P GAIN WILD-TYPE   64  273
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO               15                64
  YES              52               273
D5V10, continuous
D5V11, continuous
D5V12, continuous

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
D6V1, survival
                   sevent
clus2                 0   1
  3Q GAIN MUTATED   123  80
  3Q GAIN WILD-TYPE 124  72
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              203               196 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               80                72 
$`3Q GAIN MUTATED`
TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5557 
       37.28         9.07         8.15        23.74        57.93        20.48 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         6.25        14.83        12.62         3.72         7.76 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DD TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
       29.42        16.87         5.69        94.62         9.14         4.60 
TCGA-BB-4227 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
        4.37        13.91        22.59        14.07        14.33        71.05 
TCGA-BB-8601 TCGA-C9-A47Z TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       20.52         0.16        23.70        15.95         4.67        14.86 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4736 TCGA-CN-4737 
       20.15        12.89        15.19        32.65        12.99        17.79 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 
       34.68        26.66        41.69        13.05        16.83         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 
       12.39        35.54         8.32        16.21        11.54        11.57 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6019 
       22.45         9.53        20.68        14.24        10.39        12.85 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        3.22         9.07        13.94         7.36        10.45        20.09 
TCGA-CN-6994 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CQ-5323 TCGA-CQ-5329 
        3.91         1.51        14.70         7.40        48.20        46.75 
TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7064 
       32.38        34.75        13.25        14.99        26.79        45.30 
TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CQ-A4C6 TCGA-CQ-A4C9 TCGA-CQ-A4CE TCGA-CQ-A4CG 
       16.73        29.62        31.82        20.15        12.92        12.85 
TCGA-CR-5243 TCGA-CR-5249 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6474 TCGA-CR-6478 
       84.23        37.87        58.42        50.01        18.54         6.02 
TCGA-CR-6480 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.90        11.64         7.69        12.46        11.51        15.75 
TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7377 
       39.16        40.93        35.84         3.09        24.95         9.17 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7397 TCGA-CR-7402 
       32.78        47.01        27.06        12.89         7.10        29.95 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5439 
       48.39       139.43        17.16       129.21        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6003 
      107.51        76.50        80.12        86.83        60.49        54.74 
TCGA-CV-6433 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6939 TCGA-CV-6940 
       21.07        90.12         9.70         5.46        21.90        26.43 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6954 TCGA-CV-6962 TCGA-CV-7089 
       12.03        42.38        30.08        65.82         4.14        64.83 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
      126.15       111.16        12.66         5.26         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       12.92        71.21        10.75         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7254 
       31.36        26.20        18.97        17.13        95.34        47.97 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        57.47        35.54        17.85       210.97 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7424 TCGA-CV-7434 
        0.46        22.85        25.08         0.07        14.89         7.17 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-A461 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-8569 
      142.52        16.64        67.86         7.79        27.22         4.21 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7592 
        3.42        58.45        33.86        18.02        18.90         9.83 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I 
       10.65        11.18        16.11        21.63         0.49         3.02 
TCGA-F7-A50J TCGA-F7-A61V TCGA-F7-A623 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
       19.23        12.62         0.20         0.82         1.22         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-A634 TCGA-HL-7533 TCGA-IQ-A61E TCGA-IQ-A61G 
        1.45         0.79         0.33        34.75        19.33        11.84 
TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-KU-A66T TCGA-MT-A67G TCGA-MZ-A6I9 
       13.55        14.47         5.29         6.90         3.68         8.35 
TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX 
       29.92        15.78        54.31        10.85        36.82        47.01 
TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T7 TCGA-P3-A6T8 
       18.97         2.04        29.00        16.01        13.15 

$`3Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 
       15.19         9.30        13.64        42.35        17.10        23.84 
TCGA-BA-5558 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DE 
       53.79        21.17         2.07        11.54         7.10         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7866 
        7.82         6.15        18.35        10.19        17.62        20.98 
TCGA-BB-7870 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4738 
       37.91         0.13        26.27        21.11        21.11        14.33 
TCGA-CN-5355 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-6010 TCGA-CN-6011 
       16.04        11.84        12.49         8.52        14.73        13.94 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6022 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 
       20.68         1.48         6.64        12.95         3.68        14.20 
TCGA-CN-6997 TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 
       13.08        17.29        15.91        11.44         5.75        12.07 
TCGA-CN-A642 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 
        2.70        39.68        21.50         2.93        54.58        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 
       45.99        10.42        11.21         4.24        28.60        32.88 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7071 
       32.38         4.24        48.03        33.11        43.04        28.83 
TCGA-CQ-A4C7 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5247 
       11.61        17.92        18.02         9.96        19.99        11.77 
TCGA-CR-5248 TCGA-CR-5250 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6477 
       54.67        26.27        39.52        34.52        36.99        16.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7370 
       10.22        11.34         9.27        47.18        47.34         3.45 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       17.13        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CV-5434 TCGA-CV-5435 
       30.58         5.13         5.95        35.41       108.33        47.28 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 
       94.88        91.53        17.06        13.35        23.05        48.59 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6937 
        7.07        43.23        62.43         9.60         2.14        20.52 
TCGA-CV-6938 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6952 
        4.73        11.24       126.08        19.79        15.09         6.08 
TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       53.95        10.98         7.13         8.42        28.34         2.50 
TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7177 TCGA-CV-7183 TCGA-CV-7235 
       18.81         7.99         9.01        21.80       114.97        56.68 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7418 
        4.96        11.87         2.10        89.33         9.67        25.94 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
       34.09       100.57        56.48       156.49        54.94         3.52 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O 
       16.27        84.49        19.76         6.38        22.19        27.98 
TCGA-CV-A45Q TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 
      169.38         5.98        24.66        10.42        10.55        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       25.41         9.60        23.05         2.53        16.14         5.06 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-7588 
       18.67         3.48         3.68        35.54        16.96        14.04 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-F7-7848 TCGA-F7-A61S 
       25.48        20.45        12.13        12.10        18.54         0.10 
TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43        13.38         1.91         4.37         0.07 
TCGA-HD-7753 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-IQ-7630 
        0.16         0.82         0.36         1.61         1.08        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61I TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S 
        4.01        14.50         0.07        11.54        11.84         7.36 
TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-P3-A5QE 
        0.46         1.12        12.89         1.84         3.65        23.70 
TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T6 TCGA-QK-A64Z 
       19.00        63.02        12.99        18.18 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.07              0.07 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           210.97            169.38 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            16.83             15.55 
[1] "0.1 - 211.0 (16.8)" "0.1 - 169.4 (15.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D6V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  3Q GAIN MUTATED        10       29        32       101         5
  3Q GAIN WILD-TYPE      14       33        34        88         3
D6V3, multiclass
                   vv
clus                T1 T2 T3 T4
  3Q GAIN MUTATED   17 55 42 66
  3Q GAIN WILD-TYPE 22 48 42 62
D6V4, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  T1              17                22
  T2              55                48
  T3              42                42
  T4              66                62
                   vv
clus                N0 N1 N2 N3
  3Q GAIN MUTATED   58 28 73  5
  3Q GAIN WILD-TYPE 76 24 52  2
D6V5, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  N0              58                76
  N1              28                24
  N2              73                52
  N3               5                 2
D6V6, binary
                   cls
clus                 0  1
  3Q GAIN MUTATED   51 23
  3Q GAIN WILD-TYPE 52 20
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     51   23
  3Q GAIN WILD-TYPE   52   20
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  M0              51                52
  MX              23                20
D6V7, binary
                   cls
clus                  0   1
  3Q GAIN MUTATED    51 154
  3Q GAIN WILD-TYPE  65 134
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     51  154
  3Q GAIN WILD-TYPE   65  134
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE              51                65
  MALE               154               134
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  3Q GAIN MUTATED                                     202
  3Q GAIN WILD-TYPE                                   195
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  3Q GAIN MUTATED                                                             0
  3Q GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  3Q GAIN MUTATED                                                     3
  3Q GAIN WILD-TYPE                                                   3
D6V8, multiclass
                                                             clus
vv                                                            3Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   202
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       3
                                                             clus
vv                                                            3Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     195
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         3
D6V9, binary
                   cls
clus                  0   1
  3Q GAIN MUTATED    47 158
  3Q GAIN WILD-TYPE  32 167
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     47  158
  3Q GAIN WILD-TYPE   32  167
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO               47                32
  YES             158               167
D6V10, continuous
D6V11, continuous
D6V12, continuous

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED    21  13
  4P GAIN WILD-TYPE 226 139
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               34               365 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               13               139 
$`4P GAIN MUTATED`
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4225 TCGA-CN-4727 TCGA-CN-4737 
       12.62         3.72         7.76         4.60        14.86        17.79 
TCGA-CN-4740 TCGA-CQ-6224 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-7389 TCGA-CV-5430 
       26.66        32.38        29.62        11.77        12.89       139.43 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6939 TCGA-CV-6945 
       86.83        48.59        60.49        54.74        21.90        12.03 
TCGA-CV-6954 TCGA-CV-7090 TCGA-CV-7102 TCGA-CV-7180 TCGA-CV-7255 TCGA-CV-7263 
       65.82       126.15         1.84        10.75         2.10        18.41 
TCGA-CV-7416 TCGA-CV-7433 TCGA-DQ-5625 TCGA-DQ-7592 TCGA-F7-A623 TCGA-HD-7753 
       25.08        19.76        35.54         9.83         0.20         0.16 
TCGA-IQ-A61L TCGA-MT-A67D TCGA-P3-A6T4 TCGA-P3-A6T5 
       11.54         1.84         2.04        29.00 

$`4P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.35        57.93        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.79        57.44         6.25        21.17        14.83         2.07 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       29.42        16.87        11.54         7.10         5.69         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        7.82         6.15        94.62         9.14         4.37        18.35 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.62        13.91        22.59        20.98        37.91 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 
       14.07        14.33        71.05        20.52         0.16         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 
       26.27        23.70        15.95         4.67        20.15        12.89 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 
       15.19        32.65        21.11        21.11        12.99        14.33 
TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       34.68        41.69        13.05        16.04        16.83         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        35.54         8.32        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        22.45         9.53        14.73 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       13.94        20.68        14.24        10.39        20.68         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
       12.85         3.22         9.07         6.64        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
       10.45        20.09        12.95         3.91         3.68        14.20 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V 
       13.08         1.51        14.70         7.40        17.29        15.91 
TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 
       11.44         5.75        12.07         2.70        48.20        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        54.58        46.75        29.46        45.99 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.24        28.60        32.38        32.88 
TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       34.75        13.25         4.24        14.99        26.79        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7071 TCGA-CQ-A4C6 
       45.30        33.11        16.73        43.04        28.83        31.82 
TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG 
       11.61        20.15        17.92        18.02        12.92        12.85 
TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
        9.96        19.99        84.23        54.67        37.87        26.27 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.54 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.69        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.16        47.34        40.93        35.84         3.45         3.09 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.06 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.58 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.95        35.41        29.95        48.39 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
      107.51        94.88        76.50        91.53        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 
       13.35        23.05         7.07        43.23        21.07        62.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        9.60        90.12         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 
        4.73        26.43        11.24       126.08        19.79        42.38 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 
       15.09        30.08         6.08        53.95        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 
        8.42        28.34         2.50         4.14        64.83       111.16 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 
       18.81        12.66         7.99         9.01         5.26        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       12.92        21.80        71.21       114.97        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.36        26.20        18.97        17.13 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7406 
       95.34         4.96        11.87        47.97        36.13        57.47 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.85       210.97        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       22.85        25.94         0.07        34.09       100.57        14.89 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.94         3.52        16.27        84.49 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O 
        7.17       142.52        16.64         6.38        22.19        27.98 
TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 
      169.38        67.86         5.98        24.66        10.42        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.79        27.22        13.25        25.41         9.60        23.05 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53        16.14         5.06        18.67         3.48         4.21 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        3.68         3.42        58.45        16.96        33.86        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 
       14.04        18.90        25.48        20.45        12.13        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G 
       10.65        11.18        18.54        16.11        21.63         0.49 
TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 
        3.02        19.23         0.10        12.62         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 
       13.38         1.91         4.37         0.07         0.82         1.22 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 
        1.81         1.45         0.79         0.82         0.36         1.61 
TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.33         1.08        34.75        15.95         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K 
       19.33        11.84        13.55         0.07        14.47         5.29 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
       11.84         7.36         6.90         0.46         1.12        12.89 
TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA 
        3.65         3.68         8.35        29.92        15.78        54.31 
TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 
       23.70        10.85        36.82        47.01        19.00        63.02 
TCGA-P3-A6T3 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       18.97        12.99        16.01        13.15        18.18 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             0.16              0.07 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           139.43            210.97 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           16.325            16.140 
[1] "0.2 - 139.4 (16.3)" "0.1 - 211.0 (16.1)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "4P GAIN MUTATED"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "4P GAIN MUTATED"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "4P GAIN MUTATED"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D7V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  4P GAIN MUTATED         1        6         3        18         0
  4P GAIN WILD-TYPE      23       56        63       171         8
D7V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4P GAIN MUTATED     2  10   3  13
  4P GAIN WILD-TYPE  37  93  81 115
D7V4, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  T1               2                37
  T2              10                93
  T3               3                81
  T4              13               115
                   vv
clus                 N0  N1  N2  N3
  4P GAIN MUTATED     8   4  11   0
  4P GAIN WILD-TYPE 126  48 114   7
D7V5, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  N0               8               126
  N1               4                48
  N2              11               114
  N3               0                 7
D7V6, binary
                   cls
clus                 0  1
  4P GAIN MUTATED    5  2
  4P GAIN WILD-TYPE 98 41
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      5    2
  4P GAIN WILD-TYPE   98   41
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  M0               5                98
  MX               2                41
D7V7, binary
                   cls
clus                  0   1
  4P GAIN MUTATED    10  24
  4P GAIN WILD-TYPE 106 264
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED     10   24
  4P GAIN WILD-TYPE  106  264
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE              10               106
  MALE                24               264
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  4P GAIN MUTATED                                      34
  4P GAIN WILD-TYPE                                   363
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  4P GAIN MUTATED                                                             0
  4P GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  4P GAIN MUTATED                                                     0
  4P GAIN WILD-TYPE                                                   6
D7V8, multiclass
                                                             clus
vv                                                            4P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    34
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            4P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     363
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         6
D7V9, binary
                   cls
clus                  0   1
  4P GAIN MUTATED     8  26
  4P GAIN WILD-TYPE  71 299
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      8   26
  4P GAIN WILD-TYPE   71  299
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                8                71
  YES              26               299
D7V10, continuous
D7V11, continuous
D7V12, continuous

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED    16  13
  4Q GAIN WILD-TYPE 231 139
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               29               370 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               13               139 
$`4Q GAIN MUTATED`
TCGA-BA-6872 TCGA-BB-4225 TCGA-CN-4727 TCGA-CN-4740 TCGA-CN-5363 TCGA-CQ-7069 
       12.62         4.60        14.86        26.66         8.32        29.62 
TCGA-CR-5247 TCGA-CR-6491 TCGA-CR-7389 TCGA-CV-5436 TCGA-CV-5977 TCGA-CV-6939 
       11.77        11.51        12.89        19.20        60.49        21.90 
TCGA-CV-6945 TCGA-CV-7090 TCGA-CV-7102 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7263 
       12.03       126.15         1.84        36.00        26.20        18.41 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7433 TCGA-D6-6826 TCGA-DQ-5625 TCGA-F7-A623 
       22.85        25.08        19.76         5.06        35.54         0.20 
TCGA-HD-7753 TCGA-IQ-A61L TCGA-MT-A67D TCGA-P3-A6SW TCGA-P3-A6T4 
        0.16        11.54         1.84        36.82         2.04 

$`4Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.35        57.93        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.79        57.44         6.25        21.17        14.83         2.07 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB 
        3.72         7.76        29.42        16.87        11.54         7.10 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
        5.69         5.98         7.82         6.15        94.62         9.14 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.35        10.19        17.62        13.91        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.91        14.07        14.33        71.05        20.52 
TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        0.16         0.13        26.27        23.70        15.95         4.67 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       20.15        12.89        15.19        32.65        21.11        21.11 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-4742 
       12.99        17.79        14.33        34.68        41.69        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 
       16.04        16.83         5.69        12.39        35.54        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        22.45 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.53        14.73        13.94        20.68        14.24        10.39 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       20.68         1.48        12.85         3.22         9.07         6.64 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
       13.94         7.36        10.45        20.09        12.95         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T 
        3.68        14.20        13.08         1.51        14.70         7.40 
TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 
       17.29        15.91        11.44         5.75        12.07         2.70 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.20        39.68        21.50         2.93        54.58        46.75 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        45.99        10.42        11.21         4.24        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.38        32.88        34.75        32.38        13.25         4.24 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.99        26.79        48.03        45.30        33.11        16.73 
TCGA-CQ-7068 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB 
       43.04        28.83        31.82        11.61        20.15        17.92 
TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 
       18.02        12.92        12.85         9.96        19.99        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.67        37.87        26.27        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.54        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 
       10.22        11.34        11.64         7.69        12.46        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.16        47.34        40.93        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.45         3.09        24.95        29.23         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
        9.17        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.06        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.58         7.10         5.13         5.95        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.95        48.39       139.43        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       47.28        17.95       107.51        94.88        76.50        91.53 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       80.12        17.06        13.35        23.05        86.83        48.59 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        54.74        21.07        62.43         9.60 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.12         2.14         9.70         5.46        20.52         4.73 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6950 
       26.43        11.24       126.08        19.79        42.38        15.09 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.08         6.08        53.95        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 
        8.42        28.34         2.50         4.14        64.83       111.16 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 
       18.81        12.66         7.99         9.01         5.26        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.92        21.80        71.21        10.75       114.97        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
        4.73        47.47        31.36        18.97        17.13        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7406 
        4.96        11.87        47.97         2.10        36.13        57.47 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.85       210.97        89.33         9.67         0.46 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.57        14.89        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 
      156.49        54.94         3.52        16.27        84.49         7.17 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q 
      142.52        16.64         6.38        22.19        27.98       169.38 
TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       67.86         5.98        24.66        10.42        10.55         7.79 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        25.41         9.60        23.05         2.53 
TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
       16.14        18.67         3.48         4.21         3.68         3.42 
TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       58.45        16.96        33.86        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       25.48        20.45         9.83        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I 
       11.18        18.54        16.11        21.63         0.49         3.02 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 
       19.23         0.10        12.62         0.46         0.43        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        1.91         4.37         0.07         0.82         1.22         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 
        1.45         0.79         0.82         0.36         1.61         0.33 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
        1.08        34.75        15.95         4.01        14.50        19.33 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61O 
       11.84        13.55         0.07        14.47         5.29        11.84 
TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67F 
        7.36         6.90         0.46         1.12        12.89         3.65 
TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE 
        3.68         8.35        29.92        15.78        54.31        23.70 
TCGA-P3-A5QF TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T5 
       10.85        47.01        19.00        63.02        18.97        29.00 
TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       12.99        16.01        13.15        18.18 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             0.16              0.07 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           126.15            210.97 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           14.860            16.175 
[1] "0.2 - 126.2 (14.9)" "0.1 - 211.0 (16.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED"   "4Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED"   "4Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED"   "4Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D8V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  4Q GAIN MUTATED         1        6         0        15         2
  4Q GAIN WILD-TYPE      23       56        66       174         6
D8V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4Q GAIN MUTATED     2   6   4  12
  4Q GAIN WILD-TYPE  37  97  80 116
D8V4, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  T1               2                37
  T2               6                97
  T3               4                80
  T4              12               116
                   vv
clus                 N0  N1  N2  N3
  4Q GAIN MUTATED     8   1  10   2
  4Q GAIN WILD-TYPE 126  51 115   5
D8V5, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  N0               8               126
  N1               1                51
  N2              10               115
  N3               2                 5
D8V6, binary
                   cls
clus                 0  1
  4Q GAIN MUTATED    6  2
  4Q GAIN WILD-TYPE 97 41
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      6    2
  4Q GAIN WILD-TYPE   97   41
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  M0               6                97
  MX               2                41
D8V7, binary
                   cls
clus                  0   1
  4Q GAIN MUTATED     8  21
  4Q GAIN WILD-TYPE 108 267
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      8   21
  4Q GAIN WILD-TYPE  108  267
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE               8               108
  MALE                21               267
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  4Q GAIN MUTATED                                      28
  4Q GAIN WILD-TYPE                                   369
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  4Q GAIN MUTATED                                                             0
  4Q GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  4Q GAIN MUTATED                                                     1
  4Q GAIN WILD-TYPE                                                   5
D8V8, multiclass
                                                             clus
vv                                                            4Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    28
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       1
                                                             clus
vv                                                            4Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     369
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         5
D8V9, binary
                   cls
clus                  0   1
  4Q GAIN MUTATED     3  26
  4Q GAIN WILD-TYPE  76 299
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      3   26
  4Q GAIN WILD-TYPE   76  299
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                3                76
  YES              26               299
D8V10, continuous
D8V11, continuous
D8V12, continuous

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
D9V1, survival
                   sevent
clus2                 0   1
  5P GAIN MUTATED    96  56
  5P GAIN WILD-TYPE 151  96
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              152               247 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               56                96 
$`5P GAIN MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5558 
       15.19         9.30         9.07        17.10        23.84        53.79 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       57.44         6.25        21.17        14.83        12.62         3.72 
TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DB TCGA-BA-A6DE TCGA-BB-4217 
        7.76        29.42        16.87         7.10         5.98         6.15 
TCGA-BB-4223 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7864 TCGA-BB-7870 
       94.62         4.37        18.35        10.19        22.59        37.91 
TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-CN-4723 TCGA-CN-4727 TCGA-CN-4729 
       71.05        20.52         0.16        23.70        14.86        12.89 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       15.19        32.65        12.99        17.79        14.33        34.68 
TCGA-CN-4742 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5366 TCGA-CN-6010 TCGA-CN-6011 
       13.05        12.39         8.32        11.84        14.73        13.94 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6023 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 
       12.85         3.22        13.94        12.95         3.91        13.08 
TCGA-CN-A49B TCGA-CN-A63W TCGA-CQ-5330 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6225 
       14.70        11.44        29.46        32.88        32.38        13.25 
TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CQ-A4CD TCGA-CR-5243 TCGA-CR-6467 TCGA-CR-6471 
       45.30        16.73        18.02        84.23        58.42        39.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6492 
       36.99        18.54        16.90        11.64        12.46        15.75 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7380 TCGA-CR-7383 
       39.16        47.34        40.93        35.84        19.92        17.13 
TCGA-CR-7389 TCGA-CR-7392 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7404 TCGA-CV-5431 
       12.89        31.10         5.13         5.95        48.39        17.16 
TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5966 
       47.28        17.95       107.51        76.50        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5978 TCGA-CV-6441 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6941 
       13.35         7.07         9.60         5.46        20.52        11.24 
TCGA-CV-6945 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7090 
       12.03        65.82         7.13         8.42         2.50       126.15 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
      111.16        18.81         5.26         1.84        52.31        12.92 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7235 TCGA-CV-7245 TCGA-CV-7409 
       21.80        71.21        10.75        56.68        26.20        17.85 
TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7424 TCGA-CV-7429 TCGA-CV-7437 TCGA-CV-A6JE 
       25.08         0.07        14.89         3.52        16.64        24.66 
TCGA-CX-7086 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        7.79         3.48         4.21        16.96        33.86        18.02 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7596 TCGA-F7-A50J TCGA-F7-A61S 
       18.90        25.48         9.83        11.18        19.23         0.10 
TCGA-F7-A620 TCGA-H7-8502 TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8635 
        0.43         4.37         0.16         1.22         1.81         0.82 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-A61E TCGA-IQ-A61J TCGA-IQ-A61O TCGA-KU-A66S 
       34.75        15.95        19.33        14.47        11.84         7.36 
TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67D TCGA-P3-A5Q6 TCGA-P3-A5QA 
        6.90         0.46         1.12         1.84        15.78        54.31 
TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T6 
       36.82        47.01        63.02        18.97         2.04        12.99 
TCGA-P3-A6T8 TCGA-QK-A64Z 
       13.15        18.18 

$`5P GAIN WILD-TYPE`
TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
       13.64        37.28         8.15        23.74        42.35        57.93 
TCGA-BA-5557 TCGA-BA-6871 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4224 
       20.48         2.07        11.54         5.69         7.82         9.14 
TCGA-BB-4225 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 
        4.60        17.62        13.91        20.98        14.07        14.33 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4733 
        0.13        26.27        15.95         4.67        20.15        21.11 
TCGA-CN-4735 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       21.11        26.66        41.69        16.04        16.83         5.69 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       35.54        16.21        11.54        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       22.45         9.53        20.68        14.24        10.39        20.68 
TCGA-CN-6018 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        1.48         9.07         6.64         7.36        10.45        20.09 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V 
        3.68        14.20         1.51         7.40        17.29        15.91 
TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        5.75        12.07         2.70        48.20        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
        2.93        54.58        46.75        45.99        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6227 TCGA-CQ-6228 
        4.24        28.60        32.38        34.75         4.24        14.99 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 
       26.79        48.03        33.11        43.04        29.62        28.83 
TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CE TCGA-CQ-A4CG 
       31.82        11.61        20.15        17.92        12.92        12.85 
TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
        9.96        19.99        11.77        54.67        37.87        26.27 
TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       50.01        34.52         6.02        11.90        10.22        11.34 
TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7370 TCGA-CR-7371 
        7.69        11.51         9.27        47.18         3.45         3.09 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 
       26.17        32.78        47.01        27.06        29.82        30.02 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 TCGA-CR-7402 
       29.85        29.52        30.58         7.10        35.41        29.95 
TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5443 
      139.43       129.21       108.33        19.20        94.88        91.53 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 
       23.05        86.83        48.59        60.49        43.23        54.74 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6938 
       21.07        62.43        90.12         2.14         9.70         4.73 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6950 
       21.90        26.43       126.08        19.79        42.38        15.09 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6960 TCGA-CV-6962 
       30.08         6.08        53.95        10.98        28.34         4.14 
TCGA-CV-7089 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7183 TCGA-CV-7236 
       64.83        12.66         7.99         9.01       114.97         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        31.36        18.97        17.13        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       57.47        35.54       210.97        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 
       22.85        25.94        34.09       100.57        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
       54.94        16.27        84.49        19.76         7.17       142.52 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD 
        6.38        22.19        27.98       169.38        67.86         5.98 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.42        10.55        27.22        13.25        25.41         9.60 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-A4Z9 
       23.05         2.53        16.14         5.06        18.67         3.68 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7593 
        3.42        58.45        35.54        14.04        20.45        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G 
       12.10        10.65        18.54        16.11        21.63         0.49 
TCGA-F7-A50I TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 
        3.02        12.62         0.46         0.20        13.38         1.91 
TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-A4C1 TCGA-HD-A633 
        0.07         0.82         1.45         0.79         0.36         1.61 
TCGA-HD-A634 TCGA-HD-A6I0 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61G TCGA-IQ-A61H 
        0.33         1.08         4.01        14.50        11.84        13.55 
TCGA-IQ-A61I TCGA-IQ-A61K TCGA-IQ-A61L TCGA-MT-A67A TCGA-MT-A67F TCGA-MT-A67G 
        0.07         5.29        11.54        12.89         3.65         3.68 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6T0 TCGA-P3-A6T5 
        8.35        29.92        23.70        10.85        19.00        29.00 
TCGA-P3-A6T7 
       16.01 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.07              0.07 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           126.15            210.97 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            15.19             17.13 
[1] "0.1 - 126.2 (15.2)" "0.1 - 211.0 (17.1)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
[1] "hr=" "1.1"
D9V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  5P GAIN MUTATED         7       19        26        75         5
  5P GAIN WILD-TYPE      17       43        40       114         3
D9V3, multiclass
                   vv
clus                T1 T2 T3 T4
  5P GAIN MUTATED   12 38 31 53
  5P GAIN WILD-TYPE 27 65 53 75
D9V4, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  T1              12                27
  T2              38                65
  T3              31                53
  T4              53                75
                   vv
clus                N0 N1 N2 N3
  5P GAIN MUTATED   43 23 49  4
  5P GAIN WILD-TYPE 91 29 76  3
D9V5, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  N0              43                91
  N1              23                29
  N2              49                76
  N3               4                 3
D9V6, binary
                   cls
clus                 0  1
  5P GAIN MUTATED   39 21
  5P GAIN WILD-TYPE 64 22
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     39   21
  5P GAIN WILD-TYPE   64   22
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  M0              39                64
  MX              21                22
D9V7, binary
                   cls
clus                  0   1
  5P GAIN MUTATED    36 119
  5P GAIN WILD-TYPE  80 169
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     36  119
  5P GAIN WILD-TYPE   80  169
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE              36                80
  MALE               119               169
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  5P GAIN MUTATED                                     152
  5P GAIN WILD-TYPE                                   245
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  5P GAIN MUTATED                                                             1
  5P GAIN WILD-TYPE                                                           0
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  5P GAIN MUTATED                                                     2
  5P GAIN WILD-TYPE                                                   4
D9V8, multiclass
                                                             clus
vv                                                            5P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   152
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       2
                                                             clus
vv                                                            5P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     245
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D9V9, binary
                   cls
clus                  0   1
  5P GAIN MUTATED    39 116
  5P GAIN WILD-TYPE  40 209
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     39  116
  5P GAIN WILD-TYPE   40  209
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO               39                40
  YES             116               209
D9V10, continuous
D9V11, continuous
D9V12, continuous

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN MUTATED    31  18
  5Q GAIN WILD-TYPE 216 134
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               49               350 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               18               134 
$`5Q GAIN MUTATED`
TCGA-BA-4074 TCGA-BA-5149 TCGA-BA-5556 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-A4IF 
       15.19         8.15        23.84        21.17        14.83        29.42 
TCGA-BB-4223 TCGA-BB-7861 TCGA-BB-7864 TCGA-CN-4738 TCGA-CN-5363 TCGA-CN-6011 
       94.62        10.19        22.59        14.33         8.32        13.94 
TCGA-CN-6023 TCGA-CN-6997 TCGA-CN-A49B TCGA-CQ-6224 TCGA-CQ-7067 TCGA-CR-5243 
       13.94        13.08        14.70        32.38        16.73        84.23 
TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6484 TCGA-CR-7389 TCGA-CV-5431 TCGA-CV-5439 
       39.52        36.99        11.64        12.89        17.16        17.95 
TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-6441 TCGA-CV-6936 TCGA-CV-6945 TCGA-CV-6954 
       76.50        80.12         9.60         5.46        12.03        65.82 
TCGA-CV-6956 TCGA-CV-7102 TCGA-CV-7235 TCGA-CV-7245 TCGA-CV-7416 TCGA-D6-8569 
        7.13         1.84        56.68        26.20        25.08         4.21 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7590 TCGA-F7-A50J TCGA-F7-A61S TCGA-HD-8635 
       16.96        33.86        25.48        19.23         0.10         0.82 
TCGA-IQ-A61O TCGA-MT-A51W TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A6T2 TCGA-P3-A6T4 
       11.84         0.46        15.78        54.31        63.02         2.04 
TCGA-P3-A6T8 
       13.15 

$`5Q GAIN WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         9.07        23.74        42.35 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
       57.93        17.10        20.48        53.79        57.44         6.25 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DA 
        2.07        12.62         3.72         7.76        16.87        11.54 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4224 
        7.10         5.69         5.98         7.82         6.15         9.14 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 
        4.60         4.37        18.35        17.62        13.91        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z 
       37.91        14.07        14.33        71.05        20.52         0.16 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
        0.13        26.27        23.70        15.95         4.67        14.86 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       20.15        12.89        15.19        32.65        21.11        21.11 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.99        17.79        34.68        26.66        41.69        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 
       16.04        16.83         5.69        12.39        35.54        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        22.45 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        9.53        14.73        20.68        14.24        10.39        20.68 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 
        1.48        12.85         3.22         9.07         6.64         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
       10.45        20.09        12.95         3.91         3.68        14.20 
TCGA-CN-6998 TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y 
        1.51         7.40        17.29        15.91        11.44         5.75 
TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
       12.07         2.70        48.20        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       54.58        46.75        29.46        45.99        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 
        4.24        28.60        32.38        32.88        34.75        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.24        14.99        26.79        48.03        45.30        33.11 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 
       43.04        29.62        28.83        31.82        11.61        20.15 
TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI 
       17.92        18.02        12.92        12.85         9.96        19.99 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.67        37.87        26.27        58.42        50.01 
TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       34.52        18.54        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.34         7.69        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.16        47.34        40.93        35.84         3.45 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.09        24.95        29.23         0.99        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.06        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.58         7.10         5.13         5.95        35.41        29.95 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
       48.39       139.43       129.21       108.33        47.28        19.20 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
      107.51        94.88        91.53        17.06        13.35        23.05 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       86.83        48.59        60.49         7.07        43.23        54.74 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 
       21.07        62.43        90.12         2.14         9.70        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.73        21.90        26.43        11.24       126.08        19.79 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 
       42.38        15.09        30.08         6.08        53.95        10.98 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.42        28.34         2.50         4.14        64.83       126.15 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.16        18.81        12.66         7.99         9.01         5.26 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.92        21.80        71.21        10.75       114.97 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        36.00        31.36        18.97        17.13 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.85       210.97        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.57        14.89        56.48       156.49        54.94         3.52 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.76         7.17       142.52        16.64 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD 
        6.38        22.19        27.98       169.38        67.86         5.98 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       24.66        10.42        10.55         7.79        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       25.41         9.60        23.05         2.53        16.14         5.06 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 
       18.67         3.48         3.68         3.42        58.45        35.54 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       18.02        14.04        18.90        20.45         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.10        10.65        11.18        18.54        16.11        21.63 
TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 
        0.49         3.02        12.62         0.46         0.43         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
       13.38         1.91         4.37         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-A4C1 TCGA-HD-A633 
        1.22         1.81         1.45         0.79         0.36         1.61 
TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.33         1.08        34.75        15.95         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K 
       19.33        11.84        13.55         0.07        14.47         5.29 
TCGA-IQ-A61L TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D 
       11.54         7.36         6.90         1.12        12.89         1.84 
TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QE TCGA-P3-A5QF 
        3.65         3.68         8.35        29.92        23.70        10.85 
TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T3 TCGA-P3-A6T5 TCGA-P3-A6T6 
       36.82        47.01        19.00        18.97        29.00        12.99 
TCGA-P3-A6T7 TCGA-QK-A64Z 
       16.01        18.18 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             0.10              0.07 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            94.62            210.97 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           15.780            16.175 
[1] "0.1 - 94.6 (15.8)"  "0.1 - 211.0 (16.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D10V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  5Q GAIN MUTATED         3        3         8        28         1
  5Q GAIN WILD-TYPE      21       59        58       161         7
D10V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5Q GAIN MUTATED     5   9  13  16
  5Q GAIN WILD-TYPE  34  94  71 112
D10V4, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  T1               5                34
  T2               9                94
  T3              13                71
  T4              16               112
                   vv
clus                 N0  N1  N2  N3
  5Q GAIN MUTATED    13   7  19   1
  5Q GAIN WILD-TYPE 121  45 106   6
D10V5, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  N0              13               121
  N1               7                45
  N2              19               106
  N3               1                 6
D10V6, binary
                   cls
clus                 0  1
  5Q GAIN MUTATED   10  9
  5Q GAIN WILD-TYPE 93 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     10    9
  5Q GAIN WILD-TYPE   93   34
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  M0              10                93
  MX               9                34
D10V7, binary
                   cls
clus                  0   1
  5Q GAIN MUTATED    10  41
  5Q GAIN WILD-TYPE 106 247
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     10   41
  5Q GAIN WILD-TYPE  106  247
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE              10               106
  MALE                41               247
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  5Q GAIN MUTATED                                      50
  5Q GAIN WILD-TYPE                                   347
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  5Q GAIN MUTATED                                                             1
  5Q GAIN WILD-TYPE                                                           0
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  5Q GAIN MUTATED                                                     0
  5Q GAIN WILD-TYPE                                                   6
D10V8, multiclass
                                                             clus
vv                                                            5Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    50
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            5Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     347
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         6
D10V9, binary
                   cls
clus                  0   1
  5Q GAIN MUTATED    15  36
  5Q GAIN WILD-TYPE  64 289
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     15   36
  5Q GAIN WILD-TYPE   64  289
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO               15                64
  YES              36               289
D10V10, continuous
D10V11, continuous
D10V12, continuous

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN MUTATED    40  20
  6P GAIN WILD-TYPE 207 132
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               60               339 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               20               132 
$`6P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-6870 TCGA-BA-6873 TCGA-BB-4224 TCGA-BB-7870 
        9.30        17.10        14.83         3.72         9.14        37.91 
TCGA-C9-A47Z TCGA-CN-4723 TCGA-CN-5356 TCGA-CN-5363 TCGA-CN-5367 TCGA-CN-6020 
        0.16        23.70        16.83         8.32        11.57         3.22 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-A63U TCGA-CN-A63W TCGA-CN-A641 
        6.64        13.94        20.09        17.29        11.44        12.07 
TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-7067 TCGA-CQ-A4C7 
       46.75        45.99         4.24        32.38        16.73        11.61 
TCGA-CQ-A4CE TCGA-CR-5247 TCGA-CR-6487 TCGA-CR-7368 TCGA-CR-7389 TCGA-CR-7402 
       12.92        11.77         7.69        40.93        12.89        29.95 
TCGA-CV-5430 TCGA-CV-5442 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6937 
      139.43        76.50        60.49        54.74        90.12        20.52 
TCGA-CV-6954 TCGA-CV-6959 TCGA-CV-7235 TCGA-CV-7243 TCGA-CV-7250 TCGA-CV-7255 
       65.82         8.42        56.68        31.36        95.34         2.10 
TCGA-CV-7407 TCGA-CV-7415 TCGA-CV-7440 TCGA-CV-A6JE TCGA-DQ-5625 TCGA-F7-A50I 
       35.54        22.85        22.19        24.66        35.54         3.02 
TCGA-H7-8502 TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-A6I0 TCGA-IQ-A61E TCGA-IQ-A61L 
        4.37         0.16         1.22         1.08        19.33        11.54 
TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A67D TCGA-P3-A6SW TCGA-P3-A6T3 TCGA-P3-A6T4 
        6.90         0.46         1.84        36.82        18.97         2.04 

$`6P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.19        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       42.35        57.93        23.84        20.48        53.79        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF 
        6.25        21.17         2.07        12.62         7.76        29.42 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF 
       16.87        11.54         7.10         5.69         5.98         7.82 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        6.15        94.62         4.60         4.37        18.35        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 
       17.62        13.91        22.59        20.98        14.07        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 
       71.05        20.52         0.13        26.27        15.95         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
       14.86        20.15        12.89        15.19        32.65        21.11 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       21.11        12.99        17.79        14.33        34.68        26.66 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       41.69        13.05        16.04         5.69        12.39        35.54 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       16.21        11.54        11.84        12.49         8.52        22.45 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.53        14.73        13.94        20.68        14.24        10.39 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6024 TCGA-CN-6988 
       20.68         1.48        12.85         9.07         7.36        10.45 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
       12.95         3.91         3.68        14.20        13.08         1.51 
TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A642 TCGA-CQ-5323 
       14.70         7.40        15.91         5.75         2.70        48.20 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5332 
       39.68        21.50         2.93        54.58        29.46        10.42 
TCGA-CQ-5333 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       11.21        28.60        32.88        34.75        32.38        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.24        14.99        26.79        48.03        45.30        33.11 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C9 TCGA-CQ-A4CB 
       43.04        29.62        28.83        31.82        20.15        17.92 
TCGA-CQ-A4CD TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5248 
       18.02        12.85         9.96        19.99        84.23        54.67 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.27        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.54        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.34        11.64        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       47.18        39.16        47.34        35.84         3.45         3.09 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.06 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.58 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5431 
        7.10         5.13         5.95        35.41        48.39        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95       107.51 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       94.88        91.53        80.12        17.06        13.35        23.05 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 
       86.83        48.59         7.07        43.23        21.07        62.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 
        9.60         2.14         9.70         5.46         4.73        21.90 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.38 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 
       15.09        30.08         6.08        53.95        10.98         7.13 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.34         2.50         4.14        64.83       126.15       111.16 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.26         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.92        21.80        71.21        10.75       114.97 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        36.00        26.20        18.97        17.13 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
        4.96        11.87        47.97        36.13        18.41        57.47 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 
       17.85       210.97        89.33         9.67         0.46        25.08 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.57        14.89        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.94         3.52        16.27        84.49        19.76 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-A45O TCGA-CV-A45Q 
        7.17       142.52        16.64         6.38        27.98       169.38 
TCGA-CV-A461 TCGA-CV-A6JD TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
       67.86         5.98        10.42        10.55         7.79        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        25.41         9.60        23.05         2.53        16.14 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
        5.06        18.67         3.48         4.21         3.68         3.42 
TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       58.45        16.96        33.86        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       25.48        20.45         9.83        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50J 
       11.18        18.54        16.11        21.63         0.49        19.23 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 
        0.10        12.62         0.46         0.43         0.20        13.38 
TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        1.91         0.07         0.82         1.81         1.45         0.79 
TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HL-7533 TCGA-IQ-7630 
        0.82         0.36         1.61         0.33        34.75        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J 
        4.01        14.50        11.84        13.55         0.07        14.47 
TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67F 
        5.29        11.84         7.36         1.12        12.89         3.65 
TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE 
        3.68         8.35        29.92        15.78        54.31        23.70 
TCGA-P3-A5QF TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T5 TCGA-P3-A6T6 
       10.85        47.01        19.00        63.02        29.00        12.99 
TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       16.01        13.15        18.18 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             0.16              0.07 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           139.43            210.97 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            15.78             16.14 
[1] "0.2 - 139.4 (15.8)" "0.1 - 211.0 (16.1)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D11V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  6P GAIN MUTATED         4       10        11        28         2
  6P GAIN WILD-TYPE      20       52        55       161         6
D11V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6P GAIN MUTATED     4  17  15  20
  6P GAIN WILD-TYPE  35  86  69 108
D11V4, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  T1               4                35
  T2              17                86
  T3              15                69
  T4              20               108
                   vv
clus                 N0  N1  N2  N3
  6P GAIN MUTATED    23  10  17   2
  6P GAIN WILD-TYPE 111  42 108   5
D11V5, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  N0              23               111
  N1              10                42
  N2              17               108
  N3               2                 5
D11V6, binary
                   cls
clus                 0  1
  6P GAIN MUTATED   15 10
  6P GAIN WILD-TYPE 88 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED     15   10
  6P GAIN WILD-TYPE   88   33
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  M0              15                88
  MX              10                33
D11V7, binary
                   cls
clus                  0   1
  6P GAIN MUTATED    17  45
  6P GAIN WILD-TYPE  99 243
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED     17   45
  6P GAIN WILD-TYPE   99  243
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  FEMALE              17                99
  MALE                45               243
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  6P GAIN MUTATED                                      61
  6P GAIN WILD-TYPE                                   336
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  6P GAIN MUTATED                                                             0
  6P GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  6P GAIN MUTATED                                                     1
  6P GAIN WILD-TYPE                                                   5
D11V8, multiclass
                                                             clus
vv                                                            6P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    61
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       1
                                                             clus
vv                                                            6P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     336
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         5
D11V9, binary
                   cls
clus                  0   1
  6P GAIN MUTATED     6  56
  6P GAIN WILD-TYPE  73 269
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      6   56
  6P GAIN WILD-TYPE   73  269
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                6                73
  YES              56               269
D11V10, continuous
D11V11, continuous
D11V12, continuous

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN MUTATED    28  16
  6Q GAIN WILD-TYPE 219 136
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               44               355 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               16               136 
$`6Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-6873 TCGA-BB-7870 TCGA-C9-A47Z TCGA-CN-4723 TCGA-CN-5356 
        9.30         3.72        37.91         0.16        23.70        16.83 
TCGA-CN-5363 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-A63U TCGA-CN-A63W TCGA-CQ-5331 
        8.32         3.22         6.64        17.29        11.44        45.99 
TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-7067 TCGA-CQ-A4CE TCGA-CR-5247 TCGA-CR-7380 
        4.24        32.38        16.73        12.92        11.77        19.92 
TCGA-CR-7389 TCGA-CV-5430 TCGA-CV-5442 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6003 
       12.89       139.43        76.50        86.83        60.49        54.74 
TCGA-CV-6933 TCGA-CV-6959 TCGA-CV-6962 TCGA-CV-7255 TCGA-CV-7415 TCGA-CV-7434 
       90.12         8.42         4.14         2.10        22.85         7.17 
TCGA-CV-7440 TCGA-CX-7219 TCGA-DQ-5625 TCGA-F7-A50I TCGA-HD-7753 TCGA-HD-7917 
       22.19        27.22        35.54         3.02         0.16         1.22 
TCGA-HD-A6I0 TCGA-IQ-A61E TCGA-IQ-A61L TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A67D 
        1.08        19.33        11.54         6.90         0.46         1.84 
TCGA-P3-A5Q6 TCGA-P3-A6T4 
       15.78         2.04 

$`6Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.19        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       42.35        57.93        17.10        23.84        20.48        53.79 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         6.25        21.17        14.83         2.07        12.62 
TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD 
        7.76        29.42        16.87        11.54         7.10         5.69 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.98         7.82         6.15        94.62         9.14         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.35        10.19        17.62        13.91        22.59 
TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 
       20.98        14.07        14.33        71.05        20.52         0.13 
TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       26.27        15.95         4.67        14.86        20.15        12.89 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       15.19        32.65        21.11        21.11        12.99        17.79 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        34.68        26.66        41.69        13.05        16.04 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        5.69        12.39        35.54        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        22.45         9.53        14.73 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       13.94        20.68        14.24        10.39        20.68         1.48 
TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
       12.85         9.07        13.94         7.36        10.45        20.09 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
       12.95         3.91         3.68        14.20        13.08         1.51 
TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 
       14.70         7.40        15.91         5.75        12.07         2.70 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.20        39.68        21.50         2.93        54.58        46.75 
TCGA-CQ-5330 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 
       29.46        10.42        11.21        28.60        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.38        13.25         4.24        14.99        26.79        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 
       45.30        33.11        43.04        29.62        28.83        31.82 
TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CG TCGA-CQ-A4CH 
       11.61        20.15        17.92        18.02        12.85         9.96 
TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       19.99        84.23        54.67        37.87        26.27        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.54        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.69 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.16 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.93        35.84         3.45         3.09        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7382 
       29.23         0.99        31.96         9.17        34.06        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 
       17.13        32.78        47.01        27.06        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.58         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 
        5.95        35.41        29.95        48.39        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95       107.51        94.88 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 
       91.53        80.12        17.06        13.35        23.05        48.59 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 
        7.07        43.23        21.07        62.43         9.60         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.73        21.90        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.38        15.09 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.08         6.08        53.95        65.82        10.98         7.13 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
       28.34         2.50        64.83       126.15       111.16        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.26         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.92        21.80        71.21        10.75       114.97        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.36        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       17.13        95.34         4.96        11.87        47.97        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.85       210.97        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        25.08        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.57        14.89        56.48       156.49        54.94         3.52 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       16.27        84.49        19.76       142.52        16.64         6.38 
TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 
       27.98       169.38        67.86         5.98        24.66        10.42 
TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
       10.55         7.79        13.25        25.41         9.60        23.05 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53        16.14         5.06        18.67         3.48         4.21 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        3.68         3.42        58.45        16.96        33.86        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        25.48        20.45         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.10        10.65        11.18        18.54        16.11        21.63 
TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 
        0.49        19.23         0.10        12.62         0.46         0.43 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 
        0.20        13.38         1.91         4.37         0.07         0.82 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 
        1.81         1.45         0.79         0.82         0.36         1.61 
TCGA-HD-A634 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61G 
        0.33        34.75        15.95         4.01        14.50        11.84 
TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66S 
       13.55         0.07        14.47         5.29        11.84         7.36 
TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 
        1.12        12.89         3.65         3.68         8.35        29.92 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 
       54.31        23.70        10.85        36.82        47.01        19.00 
TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 
       63.02        18.97        29.00        12.99        16.01        13.15 
TCGA-QK-A64Z 
       18.18 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             0.16              0.07 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           139.43            210.97 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            12.33             16.64 
[1] "0.2 - 139.4 (12.3)" "0.1 - 211.0 (16.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D12V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  6Q GAIN MUTATED         3        6        10        21         2
  6Q GAIN WILD-TYPE      21       56        56       168         6
D12V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6Q GAIN MUTATED     3  11  10  19
  6Q GAIN WILD-TYPE  36  92  74 109
D12V4, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  T1               3                36
  T2              11                92
  T3              10                74
  T4              19               109
                   vv
clus                 N0  N1  N2  N3
  6Q GAIN MUTATED    19   9  11   1
  6Q GAIN WILD-TYPE 115  43 114   6
D12V5, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  N0              19               115
  N1               9                43
  N2              11               114
  N3               1                 6
D12V6, binary
                   cls
clus                 0  1
  6Q GAIN MUTATED   10  7
  6Q GAIN WILD-TYPE 93 36
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED     10    7
  6Q GAIN WILD-TYPE   93   36
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  M0              10                93
  MX               7                36
D12V7, binary
                   cls
clus                  0   1
  6Q GAIN MUTATED    14  32
  6Q GAIN WILD-TYPE 102 256
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED     14   32
  6Q GAIN WILD-TYPE  102  256
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  FEMALE              14               102
  MALE                32               256
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  6Q GAIN MUTATED                                      46
  6Q GAIN WILD-TYPE                                   351
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  6Q GAIN MUTATED                                                             0
  6Q GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  6Q GAIN MUTATED                                                     0
  6Q GAIN WILD-TYPE                                                   6
D12V8, multiclass
                                                             clus
vv                                                            6Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    46
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            6Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     351
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         6
D12V9, binary
                   cls
clus                  0   1
  6Q GAIN MUTATED     3  43
  6Q GAIN WILD-TYPE  76 282
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      3   43
  6Q GAIN WILD-TYPE   76  282
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                3                76
  YES              43               282
D12V10, continuous
D12V11, continuous
D12V12, continuous

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN MUTATED    78  67
  7P GAIN WILD-TYPE 169  85
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              145               254 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               67                85 
$`7P GAIN MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5555 TCGA-BA-6870 
       15.19         9.30        13.64         8.15        17.10        14.83 
TCGA-BB-4224 TCGA-BB-7863 TCGA-BB-7870 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z 
        9.14        13.91        37.91        71.05        20.52         0.16 
TCGA-CN-4722 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-4738 
       26.27        12.89        15.19        32.65        17.79        14.33 
TCGA-CN-4739 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5365 
       34.68        16.83         5.69        12.39         8.32        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6020 
       11.84        11.57        13.94        20.68        14.24         3.22 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6995 
        6.64        13.94         7.36        10.45        20.09         3.68 
TCGA-CN-6997 TCGA-CN-A63T TCGA-CN-A63V TCGA-CN-A641 TCGA-CQ-5329 TCGA-CQ-5334 
       13.08         7.40        15.91        12.07        46.75         4.24 
TCGA-CQ-6220 TCGA-CQ-6225 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-A4C7 
       32.38        13.25        16.73        43.04        29.62        11.61 
TCGA-CQ-A4C9 TCGA-CQ-A4CH TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6484 
       20.15         9.96        18.54        16.90         6.02        11.64 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7377 TCGA-CR-7380 
       47.18        39.16        47.34         3.45         9.17        19.92 
TCGA-CR-7382 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7398 TCGA-CV-5430 TCGA-CV-5431 
       26.17        12.89        29.82         5.13       139.43        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 
      129.21       108.33        17.95       107.51        76.50        80.12 
TCGA-CV-5978 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6940 TCGA-CV-6945 
        7.07        90.12         9.70         5.46        26.43        12.03 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6962 TCGA-CV-7090 
       15.09        30.08        53.95        65.82         4.14       126.15 
TCGA-CV-7091 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7235 
      111.16         5.26        21.80        71.21        10.75        56.68 
TCGA-CV-7236 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7254 
        4.73        31.36        26.20        18.97        17.13        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7416 
        2.10        36.13        18.41        35.54        17.85        25.08 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7435 TCGA-CV-7437 
       34.09       100.57        14.89        56.48       142.52        16.64 
TCGA-CV-7440 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6826 
       22.19         7.79        27.22        25.41        23.05         5.06 
TCGA-D6-6827 TCGA-D6-8569 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5631 TCGA-DQ-7588 
       18.67         4.21        35.54        16.96        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7592 TCGA-F7-8298 TCGA-F7-A50I TCGA-F7-A61S TCGA-HD-7229 
       18.90         9.83        16.11         3.02         0.10         0.07 
TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8634 TCGA-HD-A633 TCGA-IQ-7631 TCGA-IQ-A61H 
        0.16         1.22         0.79         1.61         4.01        13.55 
TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
        5.29        11.84         6.90         0.46         1.12        12.89 
TCGA-MT-A67G TCGA-P3-A5Q6 TCGA-P3-A6SX TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T6 
        3.68        15.78        47.01        18.97         2.04        12.99 
TCGA-P3-A6T8 
       13.15 

$`7P GAIN WILD-TYPE`
TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 
       37.28         9.07        23.74        42.35        57.93        23.84 
TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6871 
       20.48        53.79        57.44         6.25        21.17         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA 
       12.62         3.72         7.76        29.42        16.87        11.54 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 
        7.10         5.69         5.98         7.82         6.15        94.62 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7864 
        4.60         4.37        18.35        10.19        17.62        22.59 
TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-C9-A480 TCGA-CN-4723 TCGA-CN-4725 
       20.98        14.07        14.33         0.13        23.70        15.95 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        4.67        14.86        20.15        21.11        21.11        12.99 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5360 TCGA-CN-5364 
       26.66        41.69        13.05        16.04        35.54        16.21 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6016 
       12.49         8.52        22.45         9.53        14.73        10.39 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6992 TCGA-CN-6994 
       20.68         1.48        12.85         9.07        12.95         3.91 
TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63W TCGA-CN-A63Y 
       14.20         1.51        14.70        17.29        11.44         5.75 
TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        2.70        48.20        39.68        21.50         2.93        54.58 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-6218 TCGA-CQ-6221 
       29.46        45.99        10.42        11.21        28.60        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       34.75        32.38         4.24        14.99        26.79        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4CB TCGA-CQ-A4CD 
       45.30        33.11        28.83        31.82        17.92        18.02 
TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       12.92        12.85        19.99        84.23        11.77        54.67 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.27        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 
       36.99        11.90        10.22        11.34         7.69        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 
       11.51        15.75         9.27        40.93        35.84         3.09 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7383 
       24.95        29.23         0.99        31.96        34.06        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       32.78        47.01        27.06        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.58         7.10         5.95        35.41        29.95 
TCGA-CR-7404 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 
       48.39        47.28        19.20        94.88        91.53        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 
       13.35        23.05        86.83        48.59        60.49        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6937 
       54.74        21.07        62.43         9.60         2.14        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 
        4.73        21.90        11.24       126.08        19.79        42.38 
TCGA-CV-6952 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
        6.08        10.98         7.13         8.42        28.34         2.50 
TCGA-CV-7089 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 
       64.83        18.81        12.66         7.99         9.01         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7183 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7250 
       52.31        12.92       114.97        47.47        36.00        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
        4.96        11.87        57.47       210.97        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7427 TCGA-CV-7428 
        0.46        22.85        25.94         0.07       156.49        54.94 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7438 
        3.52        16.27        84.49        19.76         7.17         6.38 
TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 
       27.98       169.38        67.86         5.98        24.66        10.42 
TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-8568 
       10.55        13.25         9.60         2.53        16.14         3.48 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-7590 TCGA-DQ-7591 
        3.68         3.42        58.45        33.86        25.48        20.45 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8489 
       12.13        12.10        10.65        11.18        18.54        21.63 
TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 
        0.49        19.23        12.62         0.46         0.43         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 
       13.38         1.91         4.37         0.82         1.81         1.45 
TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 
        0.82         0.36         0.33         1.08        34.75        15.95 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61L 
       14.50        19.33        11.84         0.07        14.47        11.54 
TCGA-KU-A66S TCGA-MT-A67D TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QA 
        7.36         1.84         3.65         8.35        29.92        54.31 
TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T5 
       23.70        10.85        36.82        19.00        63.02        29.00 
TCGA-P3-A6T7 TCGA-QK-A64Z 
       16.01        18.18 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.07              0.07 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           142.52            210.97 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           15.190            16.965 
[1] "0.1 - 142.5 (15.2)" "0.1 - 211.0 (17.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D13V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  7P GAIN MUTATED         9       24        23        75         5
  7P GAIN WILD-TYPE      15       38        43       114         3
D13V3, multiclass
                   vv
clus                T1 T2 T3 T4
  7P GAIN MUTATED   11 39 33 53
  7P GAIN WILD-TYPE 28 64 51 75
D13V4, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  T1              11                28
  T2              39                64
  T3              33                51
  T4              53                75
                   vv
clus                N0 N1 N2 N3
  7P GAIN MUTATED   49 17 49  4
  7P GAIN WILD-TYPE 85 35 76  3
D13V5, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  N0              49                85
  N1              17                35
  N2              49                76
  N3               4                 3
D13V6, binary
                   cls
clus                 0  1
  7P GAIN MUTATED   33 18
  7P GAIN WILD-TYPE 70 25
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     33   18
  7P GAIN WILD-TYPE   70   25
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  M0              33                70
  MX              18                25
D13V7, binary
                   cls
clus                  0   1
  7P GAIN MUTATED    40 108
  7P GAIN WILD-TYPE  76 180
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     40  108
  7P GAIN WILD-TYPE   76  180
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE              40                76
  MALE               108               180
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  7P GAIN MUTATED                                     147
  7P GAIN WILD-TYPE                                   250
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  7P GAIN MUTATED                                                             1
  7P GAIN WILD-TYPE                                                           0
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  7P GAIN MUTATED                                                     0
  7P GAIN WILD-TYPE                                                   6
D13V8, multiclass
                                                             clus
vv                                                            7P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   147
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            7P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     250
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         6
D13V9, binary
                   cls
clus                  0   1
  7P GAIN MUTATED    31 117
  7P GAIN WILD-TYPE  48 208
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     31  117
  7P GAIN WILD-TYPE   48  208
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO               31                48
  YES             117               208
D13V10, continuous
D13V11, continuous
D13V12, continuous

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN MUTATED    53  46
  7Q GAIN WILD-TYPE 194 106
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               99               300 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               46               106 
$`7Q GAIN MUTATED`
TCGA-BA-6870 TCGA-BB-7870 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-CN-4722 
       14.83        37.91        71.05        20.52         0.16        26.27 
TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-5356 TCGA-CN-5358 
       14.86        12.89        14.33        34.68        16.83         5.69 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-6012 TCGA-CN-6013 
       35.54         8.32        11.54        11.57        20.68        14.24 
TCGA-CN-6020 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6995 
        3.22        13.94         7.36        10.45        20.09         3.68 
TCGA-CN-6997 TCGA-CN-A63T TCGA-CN-A63V TCGA-CN-A641 TCGA-CQ-6225 TCGA-CQ-7067 
       13.08         7.40        15.91        12.07        13.25        16.73 
TCGA-CQ-7069 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CR-6478 TCGA-CR-7370 TCGA-CR-7389 
       29.62        11.61        20.15         6.02         3.45        12.89 
TCGA-CR-7390 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       29.82       139.43        17.16       129.21       108.33        47.28 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5978 TCGA-CV-6933 TCGA-CV-6935 
       17.95       107.51        76.50         7.07        90.12         9.70 
TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7090 
       11.24        12.03        15.09        30.08         4.14       126.15 
TCGA-CV-7091 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7235 TCGA-CV-7245 
      111.16         5.26        21.80        71.21        56.68        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 
       18.97        17.13        47.97        36.13        18.41        35.54 
TCGA-CV-7416 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7435 TCGA-CV-7437 
       25.08        34.09        14.89        56.48       142.52        16.64 
TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8569 TCGA-DQ-5625 
        7.79        25.41         5.06        18.67         4.21        35.54 
TCGA-DQ-5629 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7592 TCGA-F7-8298 
       16.96        18.02        14.04        18.90         9.83        16.11 
TCGA-F7-A50I TCGA-F7-A61S TCGA-HD-7753 TCGA-HD-7917 TCGA-IQ-7631 TCGA-IQ-A61H 
        3.02         0.10         0.16         1.22         4.01        13.55 
TCGA-IQ-A61K TCGA-IQ-A61O TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67G TCGA-P3-A5Q6 
        5.29        11.84         0.46        12.89         3.68        15.78 
TCGA-P3-A6SX TCGA-P3-A6T4 TCGA-P3-A6T6 
       47.01         2.04        12.99 

$`7Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.35        57.93        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 
       53.79        57.44         6.25        21.17         2.07        12.62 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB 
        3.72         7.76        29.42        16.87        11.54         7.10 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
        5.69         5.98         7.82         6.15        94.62         9.14 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        4.60         4.37        18.35        10.19        17.62        13.91 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-C9-A480 TCGA-CN-4723 
       22.59        20.98        14.07        14.33         0.13        23.70 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
       15.95         4.67        20.15        15.19        32.65        21.11 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       21.11        12.99        17.79        26.66        41.69        13.05 
TCGA-CN-5355 TCGA-CN-5359 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 
       16.04        12.39        16.21        11.84        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6016 TCGA-CN-6017 
       22.45         9.53        14.73        13.94        10.39        20.68 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6992 TCGA-CN-6994 
        1.48        12.85         9.07         6.64        12.95         3.91 
TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63W TCGA-CN-A63Y 
       14.20         1.51        14.70        17.29        11.44         5.75 
TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        2.70        48.20        39.68        21.50         2.93        54.58 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       46.75        29.46        45.99        10.42        11.21         4.24 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 
       28.60        32.38        32.88        34.75        32.38         4.24 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 
       14.99        26.79        48.03        45.30        33.11        43.04 
TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG 
       28.83        31.82        17.92        18.02        12.92        12.85 
TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
        9.96        19.99        84.23        11.77        54.67        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.27        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       18.54        16.90        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.69        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 
       39.16        47.34        40.93        35.84         3.09        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7391 
       26.17        17.13        32.78        47.01        27.06        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.58         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5436 TCGA-CV-5441 
        5.95        35.41        29.95        48.39        19.20        94.88 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       91.53        80.12        17.06        13.35        23.05        86.83 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       48.59        60.49        43.23        54.74        21.07        62.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        9.60         2.14         5.46        20.52         4.73        21.90 
TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6952 TCGA-CV-6953 
       26.43       126.08        19.79        42.38         6.08        53.95 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.42        28.34         2.50 
TCGA-CV-7089 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 
       64.83        18.81        12.66         7.99         9.01         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 
       52.31        12.92        10.75       114.97         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       36.00        31.36        95.34         4.96        11.87         2.10 
TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       57.47        17.85       210.97        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7427 TCGA-CV-7428 
       22.85        25.94         0.07       100.57       156.49        54.94 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7438 
        3.52        16.27        84.49        19.76         7.17         6.38 
TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE 
       22.19        27.98       169.38        67.86         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 
       10.42        10.55        27.22        13.25         9.60        23.05 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
        2.53        16.14         3.48         3.68         3.42        58.45 
TCGA-DQ-5630 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       33.86        25.48        20.45        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61V 
       11.18        18.54        21.63         0.49        19.23        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        0.46         0.43         0.20        13.38         1.91         4.37 
TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.07         0.82         1.81         1.45         0.79         0.82 
TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 
        0.36         1.61         0.33         1.08        34.75        15.95 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61L 
       14.50        19.33        11.84         0.07        14.47        11.54 
TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51X TCGA-MT-A67D TCGA-MT-A67F TCGA-MZ-A6I9 
        7.36         6.90         1.12         1.84         3.65         8.35 
TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6T0 
       29.92        54.31        23.70        10.85        36.82        19.00 
TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T5 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       63.02        18.97        29.00        16.01        13.15        18.18 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.10              0.07 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           142.52            210.97 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
            15.78             16.57 
[1] "0.1 - 142.5 (15.8)" "0.1 - 211.0 (16.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D14V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  7Q GAIN MUTATED         8       16        16        48         3
  7Q GAIN WILD-TYPE      16       46        50       141         5
D14V3, multiclass
                   vv
clus                T1 T2 T3 T4
  7Q GAIN MUTATED    9 24 23 35
  7Q GAIN WILD-TYPE 30 79 61 93
D14V4, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  T1               9                30
  T2              24                79
  T3              23                61
  T4              35                93
                   vv
clus                 N0  N1  N2  N3
  7Q GAIN MUTATED    34  11  31   3
  7Q GAIN WILD-TYPE 100  41  94   4
D14V5, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  N0              34               100
  N1              11                41
  N2              31                94
  N3               3                 4
D14V6, binary
                   cls
clus                 0  1
  7Q GAIN MUTATED   19 13
  7Q GAIN WILD-TYPE 84 30
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     19   13
  7Q GAIN WILD-TYPE   84   30
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  M0              19                84
  MX              13                30
D14V7, binary
                   cls
clus                  0   1
  7Q GAIN MUTATED    27  74
  7Q GAIN WILD-TYPE  89 214
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     27   74
  7Q GAIN WILD-TYPE   89  214
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE              27                89
  MALE                74               214
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  7Q GAIN MUTATED                                     100
  7Q GAIN WILD-TYPE                                   297
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  7Q GAIN MUTATED                                                             1
  7Q GAIN WILD-TYPE                                                           0
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  7Q GAIN MUTATED                                                     0
  7Q GAIN WILD-TYPE                                                   6
D14V8, multiclass
                                                             clus
vv                                                            7Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   100
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            7Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     297
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         6
D14V9, binary
                   cls
clus                  0   1
  7Q GAIN MUTATED    22  79
  7Q GAIN WILD-TYPE  57 246
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     22   79
  7Q GAIN WILD-TYPE   57  246
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO               22                57
  YES              79               246
D14V10, continuous
D14V11, continuous
D14V12, continuous

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN MUTATED    71  40
  8P GAIN WILD-TYPE 176 112
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              111               288 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               40               112 
$`8P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6871 
        9.30        17.10        20.48        57.44         6.25         2.07 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-7861 TCGA-BB-7864 
        6.15        94.62         9.14         4.60        10.19        22.59 
TCGA-BB-7870 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       37.91        14.33        71.05        20.52        26.27        23.70 
TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5355 
       12.89        32.65        14.33        34.68        26.66        16.04 
TCGA-CN-5356 TCGA-CN-5359 TCGA-CN-5366 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6022 
       16.83        12.39        11.84        14.73        20.68         6.64 
TCGA-CN-6024 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6998 TCGA-CN-A63T TCGA-CN-A63V 
        7.36         3.91         3.68         1.51         7.40        15.91 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5330 TCGA-CQ-6224 TCGA-CQ-7068 TCGA-CQ-A4C9 
       39.68        21.50        29.46        32.38        43.04        20.15 
TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-6467 TCGA-CR-6470 
       12.92        12.85        19.99        84.23        58.42        50.01 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6493 TCGA-CR-7365 
       16.90         6.02        11.34         7.69         9.27        39.16 
TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7389 
       47.34         3.45        34.06        26.17        17.13        12.89 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5976 
      139.43        17.16        47.28       107.51        76.50        48.59 
TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 
       60.49        54.74        21.07         2.14         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6953 TCGA-CV-7091 
        4.73        19.79        12.03        42.38        53.95       111.16 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7180 TCGA-CV-7243 TCGA-CV-7253 TCGA-CV-7254 
       18.81        12.66        10.75        31.36        11.87        47.97 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-A461 
       18.41        35.54        17.85        14.89        54.94        67.86 
TCGA-CV-A6JE TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-8568 TCGA-DQ-5629 
       24.66         7.79        25.41        23.05         3.48        16.96 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-F7-7848 TCGA-F7-A61S TCGA-HD-7917 TCGA-HD-8314 
       14.04        18.90        18.54         0.10         1.22         1.45 
TCGA-HD-A634 TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A67D TCGA-MT-A67G 
        0.33        11.84         7.36         0.46         1.84         3.68 
TCGA-P3-A5QE TCGA-P3-A6T3 TCGA-P3-A6T5 
       23.70        18.97        29.00 

$`8P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.19        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-6869 TCGA-BA-6870 
       42.35        57.93        23.84        53.79        21.17        14.83 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA 
       12.62         3.72         7.76        29.42        16.87        11.54 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4227 TCGA-BB-4228 
        7.10         5.69         5.98         7.82         4.37        18.35 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7871 TCGA-C9-A47Z TCGA-C9-A480 
       17.62        13.91        20.98        14.07         0.16         0.13 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4733 
       15.95         4.67        14.86        20.15        15.19        21.11 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5358 
       21.11        12.99        17.79        41.69        13.05         5.69 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 
       35.54         8.32        16.21        11.54        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 
        8.52        22.45         9.53        13.94        14.24        10.39 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6023 
       20.68         1.48        12.85         3.22         9.07        13.94 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-A49B 
       10.45        20.09        12.95        14.20        13.08        14.70 
TCGA-CN-A63U TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 
       17.29        11.44         5.75        12.07         2.70        48.20 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
        2.93        54.58        46.75        45.99        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 
        4.24        28.60        32.38        32.88        34.75        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.24        14.99        26.79        48.03        45.30        33.11 
TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4CB 
       16.73        29.62        28.83        31.82        11.61        17.92 
TCGA-CQ-A4CD TCGA-CQ-A4CH TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       18.02         9.96        11.77        54.67        37.87        26.27 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6480 TCGA-CR-6481 
       39.52        34.52        36.99        18.54        11.90        10.22 
TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7368 
       11.64        12.46        11.51        15.75        47.18        40.93 
TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
       35.84         3.09        24.95        29.23         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 
        9.17        19.92        32.78        47.01        27.06        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.58         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5432 
        5.13         5.95        35.41        29.95        48.39       129.21 
TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 
      108.33        19.20        17.95        94.88        91.53        80.12 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5978 TCGA-CV-5979 
       17.06        13.35        23.05        86.83         7.07        43.23 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6939 TCGA-CV-6940 
       62.43         9.60        90.12         9.70        21.90        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6954 
       11.24       126.08        15.09        30.08         6.08        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.42        28.34         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       64.83       126.15         7.99         9.01         5.26         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 
       52.31        12.92        21.80        71.21       114.97        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        36.00        26.20        18.97        17.13 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7410 
       95.34         4.96         2.10        36.13        57.47       210.97 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.08        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 
        0.07        34.09       100.57        56.48       156.49         3.52 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.76         7.17       142.52        16.64 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A6JD TCGA-CX-7082 
        6.38        22.19        27.98       169.38         5.98        10.42 
TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 
       10.55        27.22        13.25         9.60         2.53        16.14 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
        5.06        18.67         4.21         3.68         3.42        58.45 
TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       35.54        33.86        18.02        25.48        20.45         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65        11.18        16.11        21.63 
TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 
        0.49         3.02        19.23        12.62         0.46         0.43 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.20        13.38         1.91         4.37         0.07         0.16 
TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 
        0.82         1.81         0.79         0.82         0.36         1.61 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
        1.08        34.75        15.95         4.01        14.50        19.33 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L 
       11.84        13.55         0.07        14.47         5.29        11.54 
TCGA-KU-A66T TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 
        6.90         1.12        12.89         3.65         8.35        29.92 
TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 
       15.78        54.31        10.85        36.82        47.01        19.00 
TCGA-P3-A6T2 TCGA-P3-A6T4 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       63.02         2.04        12.99        16.01        13.15        18.18 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             0.10              0.07 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           139.43            210.97 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            17.85             15.47 
[1] "0.1 - 139.4 (17.9)" "0.1 - 211.0 (15.5)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D15V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  8P GAIN MUTATED         7       18        20        51         2
  8P GAIN WILD-TYPE      17       44        46       138         6
D15V3, multiclass
                   vv
clus                T1 T2 T3 T4
  8P GAIN MUTATED   12 32 21 33
  8P GAIN WILD-TYPE 27 71 63 95
D15V4, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  T1              12                27
  T2              32                71
  T3              21                63
  T4              33                95
                   vv
clus                N0 N1 N2 N3
  8P GAIN MUTATED   35 16 35  2
  8P GAIN WILD-TYPE 99 36 90  5
D15V5, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  N0              35                99
  N1              16                36
  N2              35                90
  N3               2                 5
D15V6, binary
                   cls
clus                 0  1
  8P GAIN MUTATED   26 11
  8P GAIN WILD-TYPE 77 32
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     26   11
  8P GAIN WILD-TYPE   77   32
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  M0              26                77
  MX              11                32
D15V7, binary
                   cls
clus                  0   1
  8P GAIN MUTATED    25  88
  8P GAIN WILD-TYPE  91 200
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     25   88
  8P GAIN WILD-TYPE   91  200
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE              25                91
  MALE                88               200
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  8P GAIN MUTATED                                     108
  8P GAIN WILD-TYPE                                   289
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  8P GAIN MUTATED                                                             1
  8P GAIN WILD-TYPE                                                           0
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  8P GAIN MUTATED                                                     4
  8P GAIN WILD-TYPE                                                   2
D15V8, multiclass
                                                             clus
vv                                                            8P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   108
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       4
                                                             clus
vv                                                            8P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     289
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         2
D15V9, binary
                   cls
clus                  0   1
  8P GAIN MUTATED    25  88
  8P GAIN WILD-TYPE  54 237
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     25   88
  8P GAIN WILD-TYPE   54  237
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO               25                54
  YES              88               237
D15V10, continuous
D15V11, continuous
D15V12, continuous

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN MUTATED   140  92
  8Q GAIN WILD-TYPE 107  60
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              232               167 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               92                60 
$`8Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5557 
        9.30        37.28         8.15        42.35        17.10        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       53.79        57.44         6.25        14.83         2.07        12.62 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BB-4217 TCGA-BB-4223 
        3.72         7.76        11.54         5.69         6.15        94.62 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 
        9.14         4.60         4.37        18.35        10.19        13.91 
TCGA-BB-7864 TCGA-BB-7870 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z 
       22.59        37.91        14.33        71.05        20.52         0.16 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4731 
        0.13        26.27        23.70        20.15        12.89        32.65 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4742 
       12.99        17.79        14.33        34.68        26.66        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       16.04        16.83         8.32        16.21        11.54        11.84 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6012 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6024 
        8.52        22.45        20.68         3.22         6.64         7.36 
TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 
       10.45        12.95         3.91         3.68        14.20         1.51 
TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A642 TCGA-CQ-5324 
       14.70         7.40        15.91        11.44         2.70        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5334 TCGA-CQ-6218 
       21.50         2.93        46.75        29.46         4.24        28.60 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 
       32.38         4.24        14.99        26.79        33.11        16.73 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB 
       43.04        29.62        31.82        11.61        20.15        17.92 
TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-6467 
       12.92        12.85        19.99        84.23        11.77        58.42 
TCGA-CR-6470 TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6482 TCGA-CR-6484 
       50.01        36.99        16.90         6.02        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 
        7.69        12.46         9.27        39.16        47.34        35.84 
TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
        3.45        24.95        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7397 
       26.17        17.13        47.01        27.06        12.89         7.10 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 
        5.95        35.41       139.43        17.16       129.21        47.28 
TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5966 
       19.20       107.51        94.88        76.50        80.12        17.06 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       48.59        60.49         7.07        54.74        21.07        62.43 
TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6940 TCGA-CV-6941 
        2.14         5.46        20.52         4.73        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.38        15.09        30.08 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6959 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        6.08        53.95         8.42         4.14        64.83       126.15 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7178 
      111.16        18.81        12.66         1.84        12.92        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 
       10.75       114.97        56.68         4.73        47.47        31.36 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       26.20        18.97        17.13        11.87        47.97         2.10 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7421 
       18.41        35.54        17.85         0.46        25.08         0.07 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7434 TCGA-CV-7437 
      100.57        14.89       156.49        54.94         7.17        16.64 
TCGA-CV-7438 TCGA-CV-A461 TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7086 TCGA-CX-7219 
        6.38        67.86        24.66        10.42         7.79        27.22 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6826 TCGA-D6-8568 TCGA-D6-8569 
       25.41         9.60        23.05         5.06         3.48         4.21 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        3.68         3.42        58.45        35.54        16.96        33.86 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7592 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       14.04        18.90         9.83        18.54        16.11        21.63 
TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A620 TCGA-H7-8501 TCGA-HD-7917 
        3.02        19.23         0.10         0.43         1.91         1.22 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A634 TCGA-HL-7533 
        1.81         1.45         0.79         0.82         0.33        34.75 
TCGA-IQ-A61E TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T 
       19.33         5.29        11.54        11.84         7.36         6.90 
TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67D TCGA-MT-A67G TCGA-P3-A5Q6 TCGA-P3-A5QA 
        0.46         1.12         1.84         3.68        15.78        54.31 
TCGA-P3-A5QE TCGA-P3-A6T3 TCGA-P3-A6T5 TCGA-QK-A64Z 
       23.70        18.97        29.00        18.18 

$`8Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5556 
       15.19        13.64         9.07        23.74        57.93        23.84 
TCGA-BA-6869 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DB TCGA-BA-A6DE TCGA-BA-A6DF 
       21.17        29.42        16.87         7.10         5.98         7.82 
TCGA-BB-7862 TCGA-BB-7866 TCGA-BB-7871 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       17.62        20.98        14.07        15.95         4.67        14.86 
TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4741 TCGA-CN-5358 TCGA-CN-5359 
       15.19        21.11        21.11        41.69         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       35.54        11.57        12.49         9.53        14.73        13.94 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 
       14.24        10.39        20.68         1.48        12.85         9.07 
TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6997 TCGA-CN-A63U TCGA-CN-A63Y TCGA-CN-A641 
       13.94        20.09        13.08        17.29         5.75        12.07 
TCGA-CQ-5323 TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-6220 
       48.20        54.58        45.99        10.42        11.21        32.38 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7071 
       32.88        34.75        13.25        48.03        45.30        28.83 
TCGA-CQ-A4CD TCGA-CQ-A4CH TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6471 
       18.02         9.96        54.67        37.87        26.27        39.52 
TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6491 TCGA-CR-6492 
       34.52        18.54        11.90        10.22        11.51        15.75 
TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7385 
       47.18        40.93         3.09        29.23         0.99        32.78 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.58 
TCGA-CR-7398 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5434 TCGA-CV-5439 TCGA-CV-5443 
        5.13        29.95        48.39       108.33        17.95        91.53 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5979 TCGA-CV-6441 TCGA-CV-6933 
       13.35        23.05        86.83        43.23         9.60        90.12 
TCGA-CV-6935 TCGA-CV-6939 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6960 
        9.70        21.90        65.82        10.98         7.13        28.34 
TCGA-CV-6961 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7177 
        2.50         7.99         9.01         5.26        52.31        21.80 
TCGA-CV-7242 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7410 
       36.00        95.34         4.96        36.13        57.47       210.97 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7425 
       89.33         9.67        22.85        25.94        34.09        56.48 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7440 
        3.52        16.27        84.49        19.76       142.52        22.19 
TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A6JD TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6824 
       27.98       169.38         5.98        10.55        13.25         2.53 
TCGA-D6-6825 TCGA-D6-6827 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 
       16.14        18.67        18.02        25.48        20.45        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-A50G TCGA-F7-A61V TCGA-F7-A61W 
       12.10        10.65        11.18         0.49        12.62         0.46 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.20        13.38         4.37         0.07         0.16         0.82 
TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.36         1.61         1.08        15.95         4.01        14.50 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-MT-A67A TCGA-MT-A67F 
       11.84        13.55         0.07        14.47        12.89         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 
        8.35        29.92        10.85        36.82        47.01        19.00 
TCGA-P3-A6T2 TCGA-P3-A6T4 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 
       63.02         2.04        12.99        16.01        13.15 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.07              0.07 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           156.49            210.97 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           16.685            15.950 
[1] "0.1 - 156.5 (16.7)" "0.1 - 211.0 (15.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
[1] "hr=" "1.2"
D16V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  8Q GAIN MUTATED        15       35        43       108         7
  8Q GAIN WILD-TYPE       9       27        23        81         1
D16V3, multiclass
                   vv
clus                T1 T2 T3 T4
  8Q GAIN MUTATED   25 59 52 73
  8Q GAIN WILD-TYPE 14 44 32 55
D16V4, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  T1              25                14
  T2              59                44
  T3              52                32
  T4              73                55
                   vv
clus                N0 N1 N2 N3
  8Q GAIN MUTATED   73 31 77  6
  8Q GAIN WILD-TYPE 61 21 48  1
D16V5, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  N0              73                61
  N1              31                21
  N2              77                48
  N3               6                 1
D16V6, binary
                   cls
clus                 0  1
  8Q GAIN MUTATED   61 21
  8Q GAIN WILD-TYPE 42 22
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     61   21
  8Q GAIN WILD-TYPE   42   22
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  M0              61                42
  MX              21                22
D16V7, binary
                   cls
clus                  0   1
  8Q GAIN MUTATED    71 164
  8Q GAIN WILD-TYPE  45 124
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     71  164
  8Q GAIN WILD-TYPE   45  124
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE              71                45
  MALE               164               124
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  8Q GAIN MUTATED                                     230
  8Q GAIN WILD-TYPE                                   167
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  8Q GAIN MUTATED                                                             1
  8Q GAIN WILD-TYPE                                                           0
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  8Q GAIN MUTATED                                                     4
  8Q GAIN WILD-TYPE                                                   2
D16V8, multiclass
                                                             clus
vv                                                            8Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   230
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       4
                                                             clus
vv                                                            8Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     167
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         2
D16V9, binary
                   cls
clus                  0   1
  8Q GAIN MUTATED    45 190
  8Q GAIN WILD-TYPE  34 135
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     45  190
  8Q GAIN WILD-TYPE   34  135
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO               45                34
  YES             190               135
D16V10, continuous
D16V11, continuous
D16V12, continuous

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN MUTATED    50  31
  9P GAIN WILD-TYPE 197 121
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               81               318 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               31               121 
$`9P GAIN MUTATED`
TCGA-BA-5149 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6873 TCGA-BA-A6DA 
        8.15        23.84        20.48        57.44         3.72        11.54 
TCGA-BA-A6DD TCGA-BB-7870 TCGA-CN-5355 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5370 
        5.69        37.91        16.04        12.39         8.32         8.52 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6023 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
       14.73        13.94        13.94         3.91         3.68        14.20 
TCGA-CN-A642 TCGA-CQ-5325 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-6223 TCGA-CQ-6229 
        2.70        21.50        46.75        29.46        34.75        26.79 
TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4CD TCGA-CR-6467 
       48.03        43.04        31.82        11.61        18.02        58.42 
TCGA-CR-6487 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7395 TCGA-CV-5440 
        7.69         3.45         3.09        29.23        30.58       107.51 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5966 TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-6436 
       94.88        76.50        17.06        60.49        21.07        62.43 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6952 TCGA-CV-6962 TCGA-CV-7089 
        4.73        21.90        11.24         6.08         4.14        64.83 
TCGA-CV-7099 TCGA-CV-7235 TCGA-CV-7238 TCGA-CV-7247 TCGA-CV-7254 TCGA-CV-7261 
        7.99        56.68        47.47        18.97        47.97        36.13 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-A45Q 
       35.54        17.85        56.48       156.49         3.52       169.38 
TCGA-CV-A6JD TCGA-CX-7219 TCGA-D6-6516 TCGA-DQ-5625 TCGA-F7-A61S TCGA-H7-7774 
        5.98        27.22        25.41        35.54         0.10        13.38 
TCGA-H7-8502 TCGA-HD-7917 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-A61K 
        4.37         1.22         0.33         1.08        34.75         5.29 
TCGA-IQ-A61L TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A6SW 
       11.54         0.46        12.89         3.65         3.68        36.82 
TCGA-P3-A6T2 TCGA-P3-A6T5 TCGA-P3-A6T7 
       63.02        29.00        16.01 

$`9P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.19         9.30        13.64        37.28         9.07        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 
       42.35        57.93        17.10        53.79         6.25        21.17 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 
       14.83         2.07        12.62         7.76        29.42        16.87 
TCGA-BA-A6DB TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
        7.10         5.98         7.82         6.15        94.62         9.14 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        4.60         4.37        18.35        10.19        17.62        13.91 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       22.59        20.98        14.07        14.33        71.05        20.52 
TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        0.16         0.13        26.27        23.70        15.95         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
       14.86        20.15        12.89        15.19        32.65        21.11 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       21.11        12.99        17.79        14.33        34.68        26.66 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5364 
       41.69        13.05        16.83         5.69        35.54        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5373 TCGA-CN-5374 
       11.54        11.84        11.57        12.49        22.45         9.53 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
       20.68        14.24        10.39        20.68         1.48        12.85 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        3.22         9.07         6.64         7.36        10.45        20.09 
TCGA-CN-6992 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U 
       12.95        13.08         1.51        14.70         7.40        17.29 
TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 
       15.91        11.44         5.75        12.07        48.20        39.68 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
        2.93        54.58        45.99        10.42        11.21         4.24 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       28.60        32.38        32.88        32.38        13.25         4.24 
TCGA-CQ-6228 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CQ-7071 
       14.99        45.30        33.11        16.73        29.62        28.83 
TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI 
       20.15        17.92        12.92        12.85         9.96        19.99 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 
       84.23        11.77        54.67        37.87        26.27        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.54        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 
       11.90        10.22        11.34        11.64        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.16        47.34        40.93 
TCGA-CR-7369 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       35.84        24.95         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.06 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.95        35.41        29.95        48.39 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      139.43        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       17.95        91.53        80.12        13.35        23.05        86.83 
TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6933 
       48.59         7.07        43.23        54.74         9.60        90.12 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6942 
        2.14         9.70         5.46        20.52        26.43       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 
       19.79        12.03        42.38        15.09        30.08        53.95 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.42        28.34         2.50 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7100 TCGA-CV-7101 
      126.15       111.16        18.81        12.66         9.01         5.26 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.92        21.80        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 
      114.97         4.73        36.00        31.36        26.20        17.13 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 
       95.34         4.96        11.87         2.10        18.41        57.47 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.97        89.33         9.67         0.46        22.85        25.08 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7428 
       25.94         0.07        34.09       100.57        14.89        54.94 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.76         7.17       142.52        16.64 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A461 TCGA-CV-A6JE TCGA-CX-7082 
        6.38        22.19        27.98        67.86        24.66        10.42 
TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       10.55         7.79        13.25         9.60        23.05         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
       16.14         5.06        18.67         3.48         4.21         3.68 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        3.42        58.45        16.96        33.86        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        25.48        20.45         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G 
       10.65        11.18        18.54        16.11        21.63         0.49 
TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 
        3.02        19.23        12.62         0.46         0.43         0.20 
TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 
        1.91         0.07         0.16         0.82         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-IQ-7630 TCGA-IQ-7631 
        0.79         0.82         0.36         1.61        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J 
       14.50        19.33        11.84        13.55         0.07        14.47 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51X TCGA-MT-A67D TCGA-MZ-A6I9 
       11.84         7.36         6.90         1.12         1.84         8.35 
TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SX 
       29.92        15.78        54.31        23.70        10.85        47.01 
TCGA-P3-A6T0 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T6 TCGA-P3-A6T8 TCGA-QK-A64Z 
       19.00        18.97         2.04        12.99        13.15        18.18 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             0.10              0.07 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           169.38            210.97 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            17.85             16.03 
[1] "0.1 - 169.4 (17.9)" "0.1 - 211.0 (16.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "9P GAIN MUTATED"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
  "9P GAIN MUTATED"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "9P GAIN MUTATED"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
  "9P GAIN MUTATED"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "9P GAIN MUTATED"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
  "9P GAIN MUTATED"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D17V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  9P GAIN MUTATED         6       17        10        39         4
  9P GAIN WILD-TYPE      18       45        56       150         4
D17V3, multiclass
                   vv
clus                T1 T2 T3 T4
  9P GAIN MUTATED    8 18 19 31
  9P GAIN WILD-TYPE 31 85 65 97
D17V4, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  T1               8                31
  T2              18                85
  T3              19                65
  T4              31                97
                   vv
clus                 N0  N1  N2  N3
  9P GAIN MUTATED    31   8  24   4
  9P GAIN WILD-TYPE 103  44 101   3
D17V5, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  N0              31               103
  N1               8                44
  N2              24               101
  N3               4                 3
D17V6, binary
                   cls
clus                 0  1
  9P GAIN MUTATED   21 10
  9P GAIN WILD-TYPE 82 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     21   10
  9P GAIN WILD-TYPE   82   33
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  M0              21                82
  MX              10                33
D17V7, binary
                   cls
clus                  0   1
  9P GAIN MUTATED    30  52
  9P GAIN WILD-TYPE  86 236
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     30   52
  9P GAIN WILD-TYPE   86  236
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  FEMALE              30                86
  MALE                52               236
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  9P GAIN MUTATED                                      81
  9P GAIN WILD-TYPE                                   316
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  9P GAIN MUTATED                                                             0
  9P GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  9P GAIN MUTATED                                                     1
  9P GAIN WILD-TYPE                                                   5
D17V8, multiclass
                                                             clus
vv                                                            9P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    81
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       1
                                                             clus
vv                                                            9P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     316
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         5
D17V9, binary
                   cls
clus                  0   1
  9P GAIN MUTATED    11  71
  9P GAIN WILD-TYPE  68 254
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     11   71
  9P GAIN WILD-TYPE   68  254
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO               11                68
  YES              71               254
D17V10, continuous
D17V11, continuous
D17V12, continuous

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN MUTATED    64  42
  9Q GAIN WILD-TYPE 183 110
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
              106               293 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               42               110 
$`9Q GAIN MUTATED`
TCGA-BA-5149 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6873 
        8.15        17.10        23.84        20.48        57.44         3.72 
TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BB-4224 TCGA-BB-7864 TCGA-BB-7870 TCGA-CN-4723 
       11.54         5.69         9.14        22.59        37.91        23.70 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5359 TCGA-CN-5363 
       14.86        20.15        41.69        16.04        12.39         8.32 
TCGA-CN-5367 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6994 
       11.57        14.73        13.94         9.07        13.94         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-A63T TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5325 
        3.68        14.20         7.40         2.70        48.20        21.50 
TCGA-CQ-5330 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7068 
       29.46        34.75        13.25        26.79        48.03        43.04 
TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4CD TCGA-CQ-A4CG TCGA-CR-6467 TCGA-CR-6477 
       31.82        11.61        18.02        12.85        58.42        16.90 
TCGA-CR-7368 TCGA-CR-7373 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7389 TCGA-CV-5432 
       40.93        29.23        34.06        19.92        12.89       129.21 
TCGA-CV-5434 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5966 
      108.33        17.95       107.51        76.50        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6938 TCGA-CV-6939 
       13.35        60.49        21.07        62.43         4.73        21.90 
TCGA-CV-6941 TCGA-CV-6952 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7099 TCGA-CV-7100 
       11.24         6.08         4.14        64.83         7.99         9.01 
TCGA-CV-7177 TCGA-CV-7235 TCGA-CV-7238 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7261 
       21.80        56.68        47.47        26.20        18.97        36.13 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7415 TCGA-CV-7422 TCGA-CV-7425 
       18.41        35.54        17.85        22.85        34.09        56.48 
TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-A45Q TCGA-CV-A461 
      156.49         3.52        84.49         7.17       169.38        67.86 
TCGA-CV-A6JD TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-8569 TCGA-DQ-5625 TCGA-F7-A61S 
        5.98        27.22        25.41         4.21        35.54         0.10 
TCGA-H7-7774 TCGA-H7-8502 TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-A634 TCGA-HD-A6I0 
       13.38         4.37         1.22         1.45         0.33         1.08 
TCGA-IQ-7630 TCGA-IQ-A61L TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67G TCGA-P3-A6SW 
       15.95        11.54         0.46        12.89         3.68        36.82 
TCGA-P3-A6T2 TCGA-P3-A6T5 TCGA-P3-A6T7 TCGA-QK-A64Z 
       63.02        29.00        16.01        18.18 

$`9Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.19         9.30        13.64        37.28         9.07        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 
       42.35        57.93        53.79         6.25        21.17        14.83 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DB 
        2.07        12.62         7.76        29.42        16.87         7.10 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 
        5.98         7.82         6.15        94.62         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7871 
       18.35        10.19        17.62        13.91        20.98        14.07 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       14.33        71.05        20.52         0.16         0.13        26.27 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
       15.95         4.67        12.89        15.19        32.65        21.11 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       21.11        12.99        17.79        14.33        34.68        26.66 
TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 
       13.05        16.83         5.69        35.54        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6012 
       11.84        12.49         8.52        22.45         9.53        20.68 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
       14.24        10.39        20.68         1.48        12.85         3.22 
TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6997 
        6.64         7.36        10.45        20.09        12.95        13.08 
TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y 
        1.51        14.70        17.29        15.91        11.44         5.75 
TCGA-CN-A641 TCGA-CQ-5324 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 
       12.07        39.68         2.93        54.58        46.75        45.99 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.24        28.60        32.38        32.88 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       32.38         4.24        14.99        45.30        33.11        16.73 
TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CE TCGA-CQ-A4CH 
       29.62        28.83        20.15        17.92        12.92         9.96 
TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       19.99        84.23        11.77        54.67        37.87        26.27 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6478 
       50.01        39.52        34.52        36.99        18.54         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.69        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.16        47.34 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 
       35.84         3.45         3.09        24.95         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
        9.17        26.17        17.13        32.78        47.01        27.06 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.58 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.95        35.41        29.95        48.39 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5443 
      139.43        17.16        47.28        19.20        94.88        91.53 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       23.05        86.83        48.59         7.07        43.23        54.74 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        9.60        90.12         2.14         9.70         5.46        20.52 
TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       26.43       126.08        19.79        12.03        42.38        15.09 
TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
       30.08        53.95        65.82        10.98         7.13         8.42 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
       28.34         2.50       126.15       111.16        18.81        12.66 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7180 
        5.26         1.84        52.31        12.92        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7248 TCGA-CV-7250 
      114.97         4.73        36.00        31.36        17.13        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7406 TCGA-CV-7410 
        4.96        11.87        47.97         2.10        57.47       210.97 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        25.08        25.94         0.07 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7435 
      100.57        14.89        54.94        16.27        19.76       142.52 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A6JE TCGA-CX-7082 
       16.64         6.38        22.19        27.98        24.66        10.42 
TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       10.55         7.79        13.25         9.60        23.05         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
       16.14         5.06        18.67         3.48         3.68         3.42 
TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       58.45        16.96        33.86        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       25.48        20.45         9.83        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I 
       11.18        18.54        16.11        21.63         0.49         3.02 
TCGA-F7-A50J TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-8501 
       19.23        12.62         0.46         0.43         0.20         1.91 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8634 TCGA-HD-8635 
        0.07         0.16         0.82         1.81         0.79         0.82 
TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
        0.36         1.61        34.75         4.01        14.50        19.33 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61O 
       11.84        13.55         0.07        14.47         5.29        11.84 
TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51X TCGA-MT-A67D TCGA-MT-A67F TCGA-MZ-A6I9 
        7.36         6.90         1.12         1.84         3.65         8.35 
TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SX 
       29.92        15.78        54.31        23.70        10.85        47.01 
TCGA-P3-A6T0 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T6 TCGA-P3-A6T8 
       19.00        18.97         2.04        12.99        13.15 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             0.10              0.07 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           169.38            210.97 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
            18.10             15.19 
[1] "0.1 - 169.4 (18.1)" "0.1 - 211.0 (15.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
[1] "hr=" "1.1"
D18V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  9Q GAIN MUTATED         6       20        13        57         5
  9Q GAIN WILD-TYPE      18       42        53       132         3
D18V3, multiclass
                   vv
clus                T1 T2 T3 T4
  9Q GAIN MUTATED    9 24 23 45
  9Q GAIN WILD-TYPE 30 79 61 83
D18V4, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  T1               9                30
  T2              24                79
  T3              23                61
  T4              45                83
                   vv
clus                N0 N1 N2 N3
  9Q GAIN MUTATED   41 12 33  4
  9Q GAIN WILD-TYPE 93 40 92  3
D18V5, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  N0              41                93
  N1              12                40
  N2              33                92
  N3               4                 3
D18V6, binary
                   cls
clus                 0  1
  9Q GAIN MUTATED   24 11
  9Q GAIN WILD-TYPE 79 32
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     24   11
  9Q GAIN WILD-TYPE   79   32
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  M0              24                79
  MX              11                32
D18V7, binary
                   cls
clus                  0   1
  9Q GAIN MUTATED    32  77
  9Q GAIN WILD-TYPE  84 211
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     32   77
  9Q GAIN WILD-TYPE   84  211
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  FEMALE              32                84
  MALE                77               211
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  9Q GAIN MUTATED                                     107
  9Q GAIN WILD-TYPE                                   290
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  9Q GAIN MUTATED                                                             0
  9Q GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  9Q GAIN MUTATED                                                     2
  9Q GAIN WILD-TYPE                                                   4
D18V8, multiclass
                                                             clus
vv                                                            9Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   107
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       2
                                                             clus
vv                                                            9Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     290
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D18V9, binary
                   cls
clus                  0   1
  9Q GAIN MUTATED    19  90
  9Q GAIN WILD-TYPE  60 235
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     19   90
  9Q GAIN WILD-TYPE   60  235
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO               19                60
  YES              90               235
D18V10, continuous
D18V11, continuous
D18V12, continuous

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN MUTATED    21   6
  10P GAIN WILD-TYPE 226 146
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                27                372 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 6                146 
$`10P GAIN MUTATED`
TCGA-BA-5151 TCGA-BA-5555 TCGA-BA-6869 TCGA-BA-6872 TCGA-BB-7861 TCGA-CN-4727 
       23.74        17.10        21.17        12.62        10.19        14.86 
TCGA-CN-5356 TCGA-CN-6013 TCGA-CN-6994 TCGA-CN-A63T TCGA-CQ-7067 TCGA-CR-5247 
       16.83        14.24         3.91         7.40        16.73        11.77 
TCGA-CR-6488 TCGA-CR-7399 TCGA-CV-5441 TCGA-CV-6003 TCGA-CV-6934 TCGA-CV-6937 
       12.46         5.95        94.88        54.74         2.14        20.52 
TCGA-CV-7091 TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7421 TCGA-CV-7435 TCGA-DQ-7589 
      111.16        95.34        47.97         0.07       142.52        18.90 
TCGA-F7-7848 TCGA-HD-7917 TCGA-P3-A5QE 
       18.54         1.22        23.70 

$`10P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       42.35        57.93        23.84        20.48        53.79        57.44 
TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF 
        6.25        14.83         2.07         3.72         7.76        29.42 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF 
       16.87        11.54         7.10         5.69         5.98         7.82 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.15        94.62         9.14         4.60         4.37        18.35 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.62        13.91        22.59        20.98        37.91        14.07 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       14.33        71.05        20.52         0.16         0.13        26.27 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       23.70        15.95         4.67        20.15        12.89        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       32.65        21.11        21.11        12.99        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 
       34.68        26.66        41.69        13.05        16.04         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        35.54         8.32        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        22.45         9.53        14.73 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
       13.94        20.68        10.39        20.68         1.48        12.85 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.22         9.07         6.64        13.94         7.36        10.45 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
       20.09        12.95         3.68        14.20        13.08         1.51 
TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 
       14.70        17.29        15.91        11.44         5.75        12.07 
TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        2.70        48.20        39.68        21.50         2.93        54.58 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       46.75        29.46        45.99        10.42        11.21         4.24 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.38        32.88        34.75        32.38        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.24        14.99        26.79        48.03        45.30        33.11 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 
       43.04        29.62        28.83        31.82        11.61        20.15 
TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI 
       17.92        18.02        12.92        12.85         9.96        19.99 
TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       84.23        54.67        37.87        26.27        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.54        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 
       11.90        10.22        11.34        11.64         7.69        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.16        47.34        40.93 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.45         3.09        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.06        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.58         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.95        48.39       139.43        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 
      108.33        47.28        19.20        17.95       107.51        76.50 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       91.53        80.12        17.06        13.35        23.05        86.83 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 
       48.59        60.49         7.07        43.23        21.07        62.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 
        9.60        90.12         9.70         5.46         4.73        21.90 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.38 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.09        30.08         6.08        53.95        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.42        28.34         2.50         4.14        64.83 
TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      126.15        18.81        12.66         7.99         9.01         5.26 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.92        21.80        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.97        56.68         4.73        47.47        36.00        31.36 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       26.20        18.97        17.13         4.96        11.87         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        57.47        35.54        17.85       210.97 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.08        25.94 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.57        14.89        56.48       156.49        54.94 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 
        3.52        16.27        84.49        19.76         7.17        16.64 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD 
        6.38        22.19        27.98       169.38        67.86         5.98 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       24.66        10.42        10.55         7.79        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       25.41         9.60        23.05         2.53        16.14         5.06 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
       18.67         3.48         4.21         3.68         3.42        58.45 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 
       35.54        16.96        33.86        18.02        14.04        25.48 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       20.45         9.83        12.13        12.10        10.65        11.18 
TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S 
       16.11        21.63         0.49         3.02        19.23         0.10 
TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 
       12.62         0.46         0.43         0.20        13.38         1.91 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 
        4.37         0.07         0.16         0.82         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 
        0.79         0.82         0.36         1.61         0.33         1.08 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G 
       34.75        15.95         4.01        14.50        19.33        11.84 
TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O 
       13.55         0.07        14.47         5.29        11.54        11.84 
TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D 
        7.36         6.90         0.46         1.12        12.89         1.84 
TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA 
        3.65         3.68         8.35        29.92        15.78        54.31 
TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 
       10.85        36.82        47.01        19.00        63.02        18.97 
TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
        2.04        29.00        12.99        16.01        13.15        18.18 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.07               0.07 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            142.52             210.97 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            16.830             16.075 
[1] "0.1 - 142.5 (16.8)" "0.1 - 211.0 (16.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
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        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
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  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
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        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
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        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
[1] "hr=" "2"  
D19V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  10P GAIN MUTATED         2        4         5        13         0
  10P GAIN WILD-TYPE      22       58        61       176         8
D19V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10P GAIN MUTATED     3   6   7   8
  10P GAIN WILD-TYPE  36  97  77 120
D19V4, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  T1                3                 36
  T2                6                 97
  T3                7                 77
  T4                8                120
                    vv
clus                  N0  N1  N2  N3
  10P GAIN MUTATED    12   4   7   0
  10P GAIN WILD-TYPE 122  48 118   7
D19V5, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  N0               12                122
  N1                4                 48
  N2                7                118
  N3                0                  7
D19V6, binary
                    cls
clus                   0   1
  10P GAIN MUTATED     2   2
  10P GAIN WILD-TYPE 101  41
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      2    2
  10P GAIN WILD-TYPE  101   41
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  M0                2                101
  MX                2                 41
D19V7, binary
                    cls
clus                   0   1
  10P GAIN MUTATED     6  21
  10P GAIN WILD-TYPE 110 267
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      6   21
  10P GAIN WILD-TYPE  110  267
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  FEMALE                6                110
  MALE                 21                267
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  10P GAIN MUTATED                                      26
  10P GAIN WILD-TYPE                                   371
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  10P GAIN MUTATED                                                             0
  10P GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  10P GAIN MUTATED                                                     1
  10P GAIN WILD-TYPE                                                   5
D19V8, multiclass
                                                             clus
vv                                                            10P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     26
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            10P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      371
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          5
D19V9, binary
                    cls
clus                   0   1
  10P GAIN MUTATED     6  21
  10P GAIN WILD-TYPE  73 304
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      6   21
  10P GAIN WILD-TYPE   73  304
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 6                 73
  YES               21                304
D19V10, continuous
D19V11, continuous
D19V12, continuous

Clustering(20) Variable = 10Q GAIN MUTATION ANALYSIS
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED    18   7
  10Q GAIN WILD-TYPE 229 145
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                25                374 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 7                145 
$`10Q GAIN MUTATED`
TCGA-BA-5151 TCGA-BA-6872 TCGA-BA-6873 TCGA-CN-4727 TCGA-CN-6013 TCGA-CN-6023 
       23.74        12.62         3.72        14.86        14.24        13.94 
TCGA-CN-6994 TCGA-CN-A63T TCGA-CQ-5329 TCGA-CQ-7067 TCGA-CQ-A4C7 TCGA-CR-7390 
        3.91         7.40        46.75        16.73        11.61        29.82 
TCGA-CR-7399 TCGA-CV-5441 TCGA-CV-5966 TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6937 
        5.95        94.88        17.06        54.74         9.60        20.52 
TCGA-CV-7091 TCGA-CV-7435 TCGA-D6-6825 TCGA-DQ-5629 TCGA-F7-A620 TCGA-HD-7917 
      111.16       142.52        16.14        16.96         0.43         1.22 
TCGA-P3-A5Q6 
       15.78 

$`10Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       42.35        57.93        17.10        23.84        20.48        53.79 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-7269 
       57.44         6.25        21.17        14.83         2.07         7.76 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       29.42        16.87        11.54         7.10         5.69         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.82         6.15        94.62         9.14         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.35        10.19        17.62        13.91        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z 
       37.91        14.07        14.33        71.05        20.52         0.16 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 
        0.13        26.27        23.70        15.95         4.67        20.15 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
       12.89        15.19        32.65        21.11        21.11        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       17.79        14.33        34.68        26.66        41.69        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
       16.04        16.83         5.69        12.39        35.54         8.32 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 
       22.45         9.53        14.73        13.94        20.68        10.39 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       20.68         1.48        12.85         3.22         9.07         6.64 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 
        7.36        10.45        20.09        12.95         3.68        14.20 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W 
       13.08         1.51        14.70        17.29        15.91        11.44 
TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        5.75        12.07         2.70        48.20        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
        2.93        54.58        29.46        45.99        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.24        28.60        32.38        32.88        34.75        32.38 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.24        14.99        26.79        48.03        45.30 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C9 
       33.11        43.04        29.62        28.83        31.82        20.15 
TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI 
       17.92        18.02        12.92        12.85         9.96        19.99 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.67        37.87        26.27        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.54        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.69 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.16 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.93        35.84         3.45         3.09        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.06        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.58         7.10 
TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.13        35.41        29.95        48.39       139.43        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95       107.51 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       76.50        91.53        80.12        13.35        23.05        86.83 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 
       48.59        60.49         7.07        43.23        21.07        62.43 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 
       90.12         2.14         9.70         5.46         4.73        21.90 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.38 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.09        30.08         6.08        53.95        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.42        28.34         2.50         4.14        64.83 
TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      126.15        18.81        12.66         7.99         9.01         5.26 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.92        21.80        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.97        56.68         4.73        47.47        36.00        31.36 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.13        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        57.47        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.85       210.97        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.08        25.94         0.07        34.09       100.57        14.89 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.94         3.52        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O 
       19.76         7.17        16.64         6.38        22.19        27.98 
TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 
      169.38        67.86         5.98        24.66        10.42        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.79        27.22        13.25        25.41         9.60        23.05 
TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
        2.53         5.06        18.67         3.48         4.21         3.68 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        3.42        58.45        35.54        33.86        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        25.48        20.45         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G 
       10.65        11.18        18.54        16.11        21.63         0.49 
TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A623 
        3.02        19.23         0.10        12.62         0.46         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
       13.38         1.91         4.37         0.07         0.16         0.82 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 
        1.81         1.45         0.79         0.82         0.36         1.61 
TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.33         1.08        34.75        15.95         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K 
       19.33        11.84        13.55         0.07        14.47         5.29 
TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X 
       11.54        11.84         7.36         6.90         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 
       12.89         1.84         3.65         3.68         8.35        29.92 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 
       54.31        23.70        10.85        36.82        47.01        19.00 
TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 
       63.02        18.97         2.04        29.00        12.99        16.01 
TCGA-P3-A6T8 TCGA-QK-A64Z 
       13.15        18.18 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              0.43               0.07 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
            142.52             210.97 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             15.78              16.24 
[1] "0.4 - 142.5 (15.8)" "0.1 - 211.0 (16.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D20V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  10Q GAIN MUTATED         3        3         4        14         0
  10Q GAIN WILD-TYPE      21       59        62       175         8
D20V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10Q GAIN MUTATED     3   5   7   9
  10Q GAIN WILD-TYPE  36  98  77 119
D20V4, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  T1                3                 36
  T2                5                 98
  T3                7                 77
  T4                9                119
                    vv
clus                  N0  N1  N2  N3
  10Q GAIN MUTATED    11   4   9   0
  10Q GAIN WILD-TYPE 123  48 116   7
D20V5, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  N0               11                123
  N1                4                 48
  N2                9                116
  N3                0                  7
D20V6, binary
                    cls
clus                  0  1
  10Q GAIN MUTATED    5  2
  10Q GAIN WILD-TYPE 98 41
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      5    2
  10Q GAIN WILD-TYPE   98   41
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  M0                5                 98
  MX                2                 41
D20V7, binary
                    cls
clus                   0   1
  10Q GAIN MUTATED     6  20
  10Q GAIN WILD-TYPE 110 268
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      6   20
  10Q GAIN WILD-TYPE  110  268
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  FEMALE                6                110
  MALE                 20                268
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  10Q GAIN MUTATED                                      26
  10Q GAIN WILD-TYPE                                   371
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  10Q GAIN MUTATED                                                             0
  10Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  10Q GAIN MUTATED                                                     0
  10Q GAIN WILD-TYPE                                                   6
D20V8, multiclass
                                                             clus
vv                                                            10Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     26
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            10Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      371
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D20V9, binary
                    cls
clus                   0   1
  10Q GAIN MUTATED     7  19
  10Q GAIN WILD-TYPE  72 306
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      7   19
  10Q GAIN WILD-TYPE   72  306
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 7                 72
  YES               19                306
D20V10, continuous
D20V11, continuous
D20V12, continuous

Clustering(21) Variable = 11P GAIN MUTATION ANALYSIS
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED    33  20
  11P GAIN WILD-TYPE 214 132
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                53                346 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                20                132 
$`11P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5556 TCGA-BA-6868 TCGA-BB-4225 TCGA-BB-7861 TCGA-C9-A47Z 
        9.30        23.84         6.25         4.60        10.19         0.16 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5367 TCGA-CN-6994 
       17.79        14.33        13.05        16.04        11.57         3.91 
TCGA-CN-6997 TCGA-CQ-5323 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-7063 TCGA-CQ-7065 
       13.08        48.20        11.21         4.24        48.03        33.11 
TCGA-CQ-7069 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CR-6484 
       29.62        31.82        11.61        12.92        12.85        11.64 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7382 TCGA-CV-5440 TCGA-CV-6003 TCGA-CV-6433 
       39.16        47.34        26.17       107.51        54.74        21.07 
TCGA-CV-6937 TCGA-CV-6950 TCGA-CV-6959 TCGA-CV-7247 TCGA-CV-7254 TCGA-CV-7255 
       20.52        15.09         8.42        18.97        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7409 TCGA-CV-7416 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6827 
       36.13        17.85        25.08        27.22        25.41        18.67 
TCGA-D6-8569 TCGA-DQ-7588 TCGA-F7-A50J TCGA-HD-7229 TCGA-IQ-7630 TCGA-IQ-A61K 
        4.21        14.04        19.23         0.07        15.95         5.29 
TCGA-IQ-A61L TCGA-P3-A5QA TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T5 
       11.54        54.31        63.02        18.97        29.00 

$`11P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.19        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       42.35        57.93        17.10        20.48        53.79        57.44 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       21.17        14.83         2.07        12.62         3.72         7.76 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       29.42        16.87        11.54         7.10         5.69         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        7.82         6.15        94.62         9.14         4.37        18.35 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.62        13.91        22.59        20.98        37.91        14.07 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       14.33        71.05        20.52         0.13        26.27        23.70 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       15.95         4.67        14.86        20.15        12.89        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4739 TCGA-CN-4740 
       32.65        21.11        21.11        12.99        34.68        26.66 
TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
       41.69        16.83         5.69        12.39        35.54         8.32 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       16.21        11.54        11.84        12.49         8.52        22.45 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.53        14.73        13.94        20.68        14.24        10.39 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       20.68         1.48        12.85         3.22         9.07         6.64 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 
       13.94         7.36        10.45        20.09        12.95         3.68 
TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V 
       14.20         1.51        14.70         7.40        17.29        15.91 
TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5324 TCGA-CQ-5325 
       11.44         5.75        12.07         2.70        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        54.58        46.75        29.46        45.99        10.42 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.38        32.88        34.75        32.38        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CQ-7068 
        4.24        14.99        26.79        45.30        16.73        43.04 
TCGA-CQ-7071 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CH TCGA-CQ-A4CI 
       28.83        20.15        17.92        18.02         9.96        19.99 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.67        37.87        26.27        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.54        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 
        6.02        11.90        10.22        11.34         7.69        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 
       11.51        15.75         9.27        47.18        40.93        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.45         3.09        24.95        29.23         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
        9.17        34.06        19.92        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.06        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.58         7.10         5.13         5.95        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.95        48.39       139.43        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20        17.95        94.88        76.50        91.53 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       80.12        17.06        13.35        23.05        86.83        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       60.49         7.07        43.23        62.43         9.60        90.12 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        2.14         9.70         5.46         4.73        21.90        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 
       11.24       126.08        19.79        12.03        42.38        30.08 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6960 
        6.08        53.95        65.82        10.98         7.13        28.34 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.83       126.15       111.16        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.26         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.92        21.80        71.21        10.75       114.97        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 
        4.73        47.47        36.00        31.36        26.20        17.13 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       95.34         4.96        11.87        18.41        57.47        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 
      210.97        89.33         9.67         0.46        22.85        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.57        14.89        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.94         3.52        16.27        84.49        19.76         7.17 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q 
      142.52        16.64         6.38        22.19        27.98       169.38 
TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       67.86         5.98        24.66        10.42        10.55         7.79 
TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       13.25         9.60        23.05         2.53        16.14         5.06 
TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        3.48         3.68         3.42        58.45        35.54        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       33.86        18.02        18.90        25.48        20.45         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 
       12.13        12.10        10.65        11.18        18.54        16.11 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W 
       21.63         0.49         3.02         0.10        12.62         0.46 
TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7753 
        0.43         0.20        13.38         1.91         4.37         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.22         1.81         1.45         0.79         0.82 
TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7631 
        0.36         1.61         0.33         1.08        34.75         4.01 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J 
       14.50        19.33        11.84        13.55         0.07        14.47 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
       11.84         7.36         6.90         0.46         1.12        12.89 
TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 
        1.84         3.65         3.68         8.35        29.92        15.78 
TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T4 
       23.70        10.85        36.82        47.01        19.00         2.04 
TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       12.99        16.01        13.15        18.18 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              0.07               0.07 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            107.51             210.97 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            17.790             16.125 
[1] "0.1 - 107.5 (17.8)" "0.1 - 211.0 (16.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D21V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  11P GAIN MUTATED         5       12        10        23         1
  11P GAIN WILD-TYPE      19       50        56       166         7
D21V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11P GAIN MUTATED     6  16  13  16
  11P GAIN WILD-TYPE  33  87  71 112
D21V4, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  T1                6                 33
  T2               16                 87
  T3               13                 71
  T4               16                112
                    vv
clus                  N0  N1  N2  N3
  11P GAIN MUTATED    27   5  13   1
  11P GAIN WILD-TYPE 107  47 112   6
D21V5, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  N0               27                107
  N1                5                 47
  N2               13                112
  N3                1                  6
D21V6, binary
                    cls
clus                  0  1
  11P GAIN MUTATED   21  4
  11P GAIN WILD-TYPE 82 39
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED     21    4
  11P GAIN WILD-TYPE   82   39
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  M0               21                 82
  MX                4                 39
D21V7, binary
                    cls
clus                   0   1
  11P GAIN MUTATED    17  37
  11P GAIN WILD-TYPE  99 251
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED     17   37
  11P GAIN WILD-TYPE   99  251
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE               17                 99
  MALE                 37                251
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  11P GAIN MUTATED                                      54
  11P GAIN WILD-TYPE                                   343
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  11P GAIN MUTATED                                                             0
  11P GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  11P GAIN MUTATED                                                     0
  11P GAIN WILD-TYPE                                                   6
D21V8, multiclass
                                                             clus
vv                                                            11P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     54
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            11P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      343
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D21V9, binary
                    cls
clus                   0   1
  11P GAIN MUTATED    12  42
  11P GAIN WILD-TYPE  67 283
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED     12   42
  11P GAIN WILD-TYPE   67  283
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                12                 67
  YES               42                283
D21V10, continuous
D21V11, continuous
D21V12, continuous

Clustering(22) Variable = 11Q GAIN MUTATION ANALYSIS
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED    31  23
  11Q GAIN WILD-TYPE 216 129
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                54                345 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                23                129 
$`11Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5556 TCGA-BA-5558 TCGA-BB-4225 TCGA-BB-7861 TCGA-CN-4731 
        9.30        23.84        53.79         4.60        10.19        32.65 
TCGA-CN-4737 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5367 TCGA-CN-6018 TCGA-CN-6994 
       17.79        13.05        16.04        11.57         1.48         3.91 
TCGA-CN-6997 TCGA-CN-A63U TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6225 TCGA-CQ-7063 
       13.08        17.29        11.21         4.24        13.25        48.03 
TCGA-CQ-7065 TCGA-CQ-7069 TCGA-CQ-A4C7 TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CR-6484 
       33.11        29.62        11.61        12.92        12.85        11.64 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7372 TCGA-CR-7383 TCGA-CV-5440 TCGA-CV-6003 
       39.16        47.34        24.95        17.13       107.51        54.74 
TCGA-CV-6937 TCGA-CV-6950 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-7248 TCGA-CV-7255 
       20.52        15.09         8.42        28.34        17.13         2.10 
TCGA-CV-7261 TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7440 TCGA-CX-7219 TCGA-D6-6516 
       36.13        25.08       100.57        22.19        27.22        25.41 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-A4ZB TCGA-DQ-5631 TCGA-F7-A50J TCGA-HD-7229 
        5.06        18.67         3.42        18.02        19.23         0.07 
TCGA-IQ-7630 TCGA-IQ-A61K TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A6T3 TCGA-P3-A6T5 
       15.95         5.29        15.78        54.31        18.97        29.00 

$`11Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.19        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 
       42.35        57.93        17.10        20.48        57.44         6.25 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       21.17        14.83         2.07        12.62         3.72         7.76 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       29.42        16.87        11.54         7.10         5.69         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        7.82         6.15        94.62         9.14         4.37        18.35 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.62        13.91        22.59        20.98        37.91        14.07 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       14.33        71.05        20.52         0.16         0.13        26.27 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       23.70        15.95         4.67        14.86        20.15        12.89 
TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
       15.19        21.11        21.11        12.99        14.33        34.68 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       26.66        41.69        16.83         5.69        12.39        35.54 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 
        8.32        16.21        11.54        11.84        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       22.45         9.53        14.73        13.94        20.68        14.24 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       10.39        20.68        12.85         3.22         9.07         6.64 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 
       13.94         7.36        10.45        20.09        12.95         3.68 
TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63V TCGA-CN-A63W 
       14.20         1.51        14.70         7.40        15.91        11.44 
TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        5.75        12.07         2.70        48.20        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        54.58        46.75        29.46        45.99        10.42 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 
       28.60        32.38        32.88        34.75        32.38         4.24 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7071 
       14.99        26.79        45.30        16.73        43.04        28.83 
TCGA-CQ-A4C6 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CH TCGA-CQ-A4CI 
       31.82        20.15        17.92        18.02         9.96        19.99 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.67        37.87        26.27        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.54        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 
        6.02        11.90        10.22        11.34         7.69        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 
       11.51        15.75         9.27        47.18        40.93        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.45         3.09        29.23         0.99        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       34.06        19.92        26.17        32.78        47.01        27.06 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.58         7.10         5.13         5.95        35.41        29.95 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.39       139.43        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       19.20        17.95        94.88        76.50        91.53        80.12 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        23.05        86.83        48.59        60.49 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
        7.07        43.23        21.07        62.43         9.60        90.12 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        2.14         9.70         5.46         4.73        21.90        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 
       11.24       126.08        19.79        12.03        42.38        30.08 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6961 
        6.08        53.95        65.82        10.98         7.13         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.83       126.15       111.16        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.26         1.84        52.31        12.92 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.80        71.21        10.75       114.97        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7250 
       47.47        36.00        31.36        26.20        18.97        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
        4.96        11.87        47.97        18.41        57.47        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.85       210.97        89.33         9.67         0.46        22.85 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
       25.94         0.07        34.09        14.89        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.94         3.52        16.27        84.49        19.76         7.17 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 
      142.52        16.64         6.38        27.98       169.38        67.86 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 
        5.98        24.66        10.42        10.55         7.79        13.25 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-8568 TCGA-D6-8569 
        9.60        23.05         2.53        16.14         3.48         4.21 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 
        3.68        58.45        35.54        16.96        33.86        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        25.48        20.45         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G 
       10.65        11.18        18.54        16.11        21.63         0.49 
TCGA-F7-A50I TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 
        3.02         0.10        12.62         0.46         0.43         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
       13.38         1.91         4.37         0.16         0.82         1.22 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 
        1.81         1.45         0.79         0.82         0.36         1.61 
TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
        0.33         1.08        34.75         4.01        14.50        19.33 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61L TCGA-IQ-A61O 
       11.84        13.55         0.07        14.47        11.54        11.84 
TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D 
        7.36         6.90         0.46         1.12        12.89         1.84 
TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QE TCGA-P3-A5QF 
        3.65         3.68         8.35        29.92        23.70        10.85 
TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T4 TCGA-P3-A6T6 
       36.82        47.01        19.00        63.02         2.04        12.99 
TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       16.01        13.15        18.18 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              0.07               0.07 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            107.51             210.97 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             17.21              16.01 
[1] "0.1 - 107.5 (17.2)" "0.1 - 211.0 (16.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D22V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  11Q GAIN MUTATED         6        9        11        27         0
  11Q GAIN WILD-TYPE      18       53        55       162         8
D22V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11Q GAIN MUTATED     7  12  15  19
  11Q GAIN WILD-TYPE  32  91  69 109
D22V4, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  T1                7                 32
  T2               12                 91
  T3               15                 69
  T4               19                109
                    vv
clus                  N0  N1  N2  N3
  11Q GAIN MUTATED    25   4  18   0
  11Q GAIN WILD-TYPE 109  48 107   7
D22V5, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  N0               25                109
  N1                4                 48
  N2               18                107
  N3                0                  7
D22V6, binary
                    cls
clus                  0  1
  11Q GAIN MUTATED   18  5
  11Q GAIN WILD-TYPE 85 38
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED     18    5
  11Q GAIN WILD-TYPE   85   38
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  M0               18                 85
  MX                5                 38
D22V7, binary
                    cls
clus                   0   1
  11Q GAIN MUTATED    20  36
  11Q GAIN WILD-TYPE  96 252
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED     20   36
  11Q GAIN WILD-TYPE   96  252
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE               20                 96
  MALE                 36                252
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  11Q GAIN MUTATED                                      56
  11Q GAIN WILD-TYPE                                   341
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  11Q GAIN MUTATED                                                             0
  11Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  11Q GAIN MUTATED                                                     0
  11Q GAIN WILD-TYPE                                                   6
D22V8, multiclass
                                                             clus
vv                                                            11Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     56
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            11Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      341
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D22V9, binary
                    cls
clus                   0   1
  11Q GAIN MUTATED     9  47
  11Q GAIN WILD-TYPE  70 278
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      9   47
  11Q GAIN WILD-TYPE   70  278
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 9                 70
  YES               47                278
D22V10, continuous
D22V11, continuous
D22V12, continuous

Clustering(23) Variable = 12P GAIN MUTATION ANALYSIS
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN MUTATED    73  39
  12P GAIN WILD-TYPE 174 113
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               112                287 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                39                113 
$`12P GAIN MUTATED`
TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6871 TCGA-BA-A4IF TCGA-BB-4223 TCGA-BB-4224 
       17.10        57.44         2.07        29.42        94.62         9.14 
TCGA-BB-4225 TCGA-BB-7862 TCGA-BB-7870 TCGA-C9-A47Z TCGA-CN-4725 TCGA-CN-4728 
        4.60        17.62        37.91         0.16        15.95        20.15 
TCGA-CN-4729 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-5356 TCGA-CN-5359 
       12.89        17.79        14.33        34.68        16.83        12.39 
TCGA-CN-5366 TCGA-CN-6012 TCGA-CN-6018 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
       11.84        20.68         1.48        13.94         7.36        10.45 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-A49B TCGA-CN-A63T TCGA-CQ-5329 TCGA-CQ-5332 
        3.91         3.68        14.70         7.40        46.75        10.42 
TCGA-CQ-6220 TCGA-CQ-6224 TCGA-CQ-7067 TCGA-CQ-A4CE TCGA-CR-5243 TCGA-CR-5247 
       32.38        32.38        16.73        12.92        84.23        11.77 
TCGA-CR-6467 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7372 
       58.42         7.69        12.46        47.18        39.16        24.95 
TCGA-CR-7379 TCGA-CR-7383 TCGA-CR-7390 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       34.06        17.13        29.82         7.10         5.13         5.95 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-5978 
      139.43        17.16       129.21       108.33       107.51         7.07 
TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6945 
       54.74        90.12        20.52        26.43        11.24        12.03 
TCGA-CV-6959 TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 
        8.42         4.14       111.16         1.84        52.31        21.80 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7254 
       36.00        31.36        26.20        18.97        17.13        47.97 
TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
       36.13        35.54        17.85        25.08        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7086 TCGA-CX-7219 
       34.09       142.52        16.64        22.19         7.79        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6823 TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-7588 
       13.25        25.41        23.05        58.45        16.96        14.04 
TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-F7-A50J TCGA-F7-A61S 
       18.90        20.45         9.83        18.54        19.23         0.10 
TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-KU-A66T 
       13.38         1.91         0.16         0.82         1.22         6.90 
TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67G TCGA-P3-A5Q6 
        0.46         1.12        12.89         1.84         3.68        15.78 
TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-QK-A64Z 
       63.02        18.97         2.04        18.18 

$`12P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       23.74        42.35        57.93        23.84        20.48        53.79 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        6.25        21.17        14.83        12.62         3.72         7.76 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF 
       16.87        11.54         7.10         5.69         5.98         7.82 
TCGA-BB-4217 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 
        6.15         4.37        18.35        10.19        13.91        22.59 
TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 
       20.98        14.07        14.33        71.05        20.52         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4731 
       26.27        23.70         4.67        14.86        15.19        32.65 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       21.11        21.11        12.99        26.66        41.69        13.05 
TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
       16.04         5.69        35.54         8.32        16.21        11.54 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        22.45         9.53        14.73 
TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6020 
       13.94        14.24        10.39        20.68        12.85         3.22 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6996 TCGA-CN-6997 
        9.07         6.64        20.09        12.95        14.20        13.08 
TCGA-CN-6998 TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 
        1.51        17.29        15.91        11.44         5.75        12.07 
TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        2.70        48.20        39.68        21.50         2.93        54.58 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 
       29.46        45.99        11.21         4.24        28.60        32.88 
TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       34.75        13.25         4.24        14.99        26.79        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 
       45.30        33.11        43.04        29.62        28.83        31.82 
TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CG TCGA-CQ-A4CH 
       11.61        20.15        17.92        18.02        12.85         9.96 
TCGA-CQ-A4CI TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 
       19.99        54.67        37.87        26.27        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.54        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       10.22        11.34        11.64        11.51        15.75         9.27 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 
       47.34        40.93        35.84         3.45         3.09        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 
        0.99        31.96         9.17        19.92        26.17        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.06        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5435 
       29.52        30.58        35.41        29.95        48.39        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       19.20        17.95        94.88        76.50        91.53        80.12 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        23.05        86.83        48.59        60.49 
TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 
       43.23        21.07        62.43         9.60         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 
        5.46         4.73        21.90       126.08        19.79        42.38 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.09        30.08         6.08        53.95        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 
        7.13        28.34         2.50        64.83       126.15        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7104 TCGA-CV-7178 
       12.66         7.99         9.01         5.26        12.92        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7250 
       10.75       114.97        56.68         4.73        47.47        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7410 
        4.96        11.87         2.10        18.41        57.47       210.97 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7423 TCGA-CV-7424 
       89.33         9.67         0.46        22.85       100.57        14.89 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.94         3.52        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7438 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 
       19.76         7.17         6.38        27.98       169.38        67.86 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6517 TCGA-D6-6824 
        5.98        24.66        10.42        10.55         9.60         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
       16.14         5.06        18.67         3.48         4.21         3.68 
TCGA-D6-A4ZB TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-DQ-7593 
        3.42        35.54        33.86        18.02        25.48        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G 
       12.10        10.65        11.18        16.11        21.63         0.49 
TCGA-F7-A50I TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-8502 
        3.02        12.62         0.46         0.43         0.20         4.37 
TCGA-HD-7229 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 
        0.07         1.81         1.45         0.79         0.82         0.36 
TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.61         0.33         1.08        34.75        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J 
       14.50        19.33        11.84        13.55         0.07        14.47 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A67F TCGA-MZ-A6I9 
        5.29        11.54        11.84         7.36         3.65         8.35 
TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX 
       29.92        54.31        23.70        10.85        36.82        47.01 
TCGA-P3-A6T0 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 
       19.00        29.00        12.99        16.01        13.15 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.07               0.07 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            142.52             210.97 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             17.13              15.75 
[1] "0.1 - 142.5 (17.1)" "0.1 - 211.0 (15.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
[1] "hr=" "1.2"
D23V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  12P GAIN MUTATED         9       17        19        55         2
  12P GAIN WILD-TYPE      15       45        47       134         6
D23V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  12P GAIN MUTATED   11 30 26 35
  12P GAIN WILD-TYPE 28 73 58 93
D23V4, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  T1               11                 28
  T2               30                 73
  T3               26                 58
  T4               35                 93
                    vv
clus                 N0 N1 N2 N3
  12P GAIN MUTATED   42 13 36  2
  12P GAIN WILD-TYPE 92 39 89  5
D23V5, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  N0               42                 92
  N1               13                 39
  N2               36                 89
  N3                2                  5
D23V6, binary
                    cls
clus                  0  1
  12P GAIN MUTATED   25 12
  12P GAIN WILD-TYPE 78 31
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     25   12
  12P GAIN WILD-TYPE   78   31
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  M0               25                 78
  MX               12                 31
D23V7, binary
                    cls
clus                   0   1
  12P GAIN MUTATED    30  84
  12P GAIN WILD-TYPE  86 204
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     30   84
  12P GAIN WILD-TYPE   86  204
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE               30                 86
  MALE                 84                204
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  12P GAIN MUTATED                                     114
  12P GAIN WILD-TYPE                                   283
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  12P GAIN MUTATED                                                             0
  12P GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  12P GAIN MUTATED                                                     0
  12P GAIN WILD-TYPE                                                   6
D23V8, multiclass
                                                             clus
vv                                                            12P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    114
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            12P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      283
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D23V9, binary
                    cls
clus                   0   1
  12P GAIN MUTATED    23  91
  12P GAIN WILD-TYPE  56 234
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     23   91
  12P GAIN WILD-TYPE   56  234
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                23                 56
  YES               91                234
D23V10, continuous
D23V11, continuous
D23V12, continuous

Clustering(24) Variable = 12Q GAIN MUTATION ANALYSIS
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN MUTATED    44  23
  12Q GAIN WILD-TYPE 203 129
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                67                332 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                23                129 
$`12Q GAIN MUTATED`
TCGA-BA-5559 TCGA-BA-6871 TCGA-BA-A4IF TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-7870 
       57.44         2.07        29.42        94.62         4.60        37.91 
TCGA-C9-A47Z TCGA-CN-4725 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4737 TCGA-CN-4739 
        0.16        15.95        14.86        20.15        17.79        34.68 
TCGA-CN-5356 TCGA-CN-5359 TCGA-CN-5366 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6023 
       16.83        12.39        11.84        14.73        20.68        13.94 
TCGA-CN-6988 TCGA-CN-6995 TCGA-CN-A49B TCGA-CN-A63T TCGA-CQ-5332 TCGA-CQ-6220 
       10.45         3.68        14.70         7.40        10.42        32.38 
TCGA-CQ-6224 TCGA-CQ-7067 TCGA-CQ-A4CE TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-7365 
       32.38        16.73        12.92        11.77        58.42        39.16 
TCGA-CR-7379 TCGA-CR-7383 TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 
       34.06        17.13         5.95       139.43        17.16       108.33 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6959 TCGA-CV-6962 TCGA-CV-7102 TCGA-CV-7242 
       26.43        11.24         8.42         4.14         1.84        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7416 TCGA-CV-7421 
       31.36        26.20        18.97        17.13        25.08         0.07 
TCGA-CV-7422 TCGA-CV-7435 TCGA-CV-7440 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6823 
       34.09       142.52        22.19        13.25        25.41        23.05 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-F7-A50J TCGA-F7-A61S TCGA-H7-7774 
       14.04        18.90        20.45        19.23         0.10        13.38 
TCGA-HD-7753 TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67G 
        0.16         6.90         0.46        12.89         1.84         3.68 
TCGA-P3-A6T4 
        2.04 

$`12Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.35        57.93        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       53.79         6.25        21.17        14.83        12.62         3.72 
TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
        7.76        16.87        11.54         7.10         5.69         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        7.82         6.15         9.14         4.37        18.35        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 
       17.62        13.91        22.59        20.98        14.07        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 
       71.05        20.52         0.13        26.27        23.70         4.67 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
       12.89        15.19        32.65        21.11        21.11        12.99 
TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 
       14.33        26.66        41.69        13.05        16.04         5.69 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 
       35.54         8.32        16.21        11.54        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 
        8.52        22.45         9.53        13.94        14.24        10.39 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       20.68         1.48        12.85         3.22         9.07         6.64 
TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 
        7.36        20.09        12.95         3.91        14.20        13.08 
TCGA-CN-6998 TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 
        1.51        17.29        15.91        11.44         5.75        12.07 
TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        2.70        48.20        39.68        21.50         2.93        54.58 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       46.75        29.46        45.99        11.21         4.24        28.60 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.88        34.75        13.25         4.24        14.99        26.79 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 
       48.03        45.30        33.11        43.04        29.62        28.83 
TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CG 
       31.82        11.61        20.15        17.92        18.02        12.85 
TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
        9.96        19.99        84.23        54.67        37.87        26.27 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.54        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.69 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 
       12.46        11.51        15.75         9.27        47.18        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.93        35.84         3.45         3.09        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 
        0.99        31.96         9.17        19.92        26.17        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.06        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 
       29.85        29.52        30.58         7.10         5.13        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       29.95        48.39       129.21        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
      107.51        94.88        76.50        91.53        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        23.05        86.83        48.59        60.49         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        54.74        21.07        62.43         9.60        90.12 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.73        21.90 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.38        15.09        30.08 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6960 
        6.08        53.95        65.82        10.98         7.13        28.34 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        2.50        64.83       126.15       111.16        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         5.26        52.31        12.92        21.80 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.97        56.68         4.73        47.47 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.85       210.97        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7423 TCGA-CV-7424 
        9.67         0.46        22.85        25.94       100.57        14.89 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.94         3.52        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-A45O TCGA-CV-A45Q 
       19.76         7.17        16.64         6.38        27.98       169.38 
TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       67.86         5.98        24.66        10.42        10.55         7.79 
TCGA-CX-7219 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
       27.22         9.60         2.53        16.14         5.06        18.67 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 
        3.48         4.21         3.68         3.42        58.45        35.54 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7593 
       16.96        33.86        18.02        25.48         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.10        10.65        11.18        18.54        16.11        21.63 
TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 
        0.49         3.02        12.62         0.46         0.43         0.20 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        1.91         4.37         0.07         0.82         1.22         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 
        1.45         0.79         0.82         0.36         1.61         0.33 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
        1.08        34.75        15.95         4.01        14.50        19.33 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L 
       11.84        13.55         0.07        14.47         5.29        11.54 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51X TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 
       11.84         7.36         1.12         3.65         8.35        29.92 
TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX 
       15.78        54.31        23.70        10.85        36.82        47.01 
TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 
       19.00        63.02        18.97        29.00        12.99        16.01 
TCGA-P3-A6T8 TCGA-QK-A64Z 
       13.15        18.18 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.07               0.07 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            142.52             210.97 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            16.730             16.125 
[1] "0.1 - 142.5 (16.7)" "0.1 - 211.0 (16.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D24V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  12Q GAIN MUTATED         6        8        13        33         0
  12Q GAIN WILD-TYPE      18       54        53       156         8
D24V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12Q GAIN MUTATED     7  15  17  21
  12Q GAIN WILD-TYPE  32  88  67 107
D24V4, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  T1                7                 32
  T2               15                 88
  T3               17                 67
  T4               21                107
                    vv
clus                  N0  N1  N2  N3
  12Q GAIN MUTATED    29   7  20   0
  12Q GAIN WILD-TYPE 105  45 105   7
D24V5, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  N0               29                105
  N1                7                 45
  N2               20                105
  N3                0                  7
D24V6, binary
                    cls
clus                  0  1
  12Q GAIN MUTATED   16  7
  12Q GAIN WILD-TYPE 87 36
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     16    7
  12Q GAIN WILD-TYPE   87   36
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  M0               16                 87
  MX                7                 36
D24V7, binary
                    cls
clus                   0   1
  12Q GAIN MUTATED    20  48
  12Q GAIN WILD-TYPE  96 240
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     20   48
  12Q GAIN WILD-TYPE   96  240
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE               20                 96
  MALE                 48                240
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  12Q GAIN MUTATED                                      68
  12Q GAIN WILD-TYPE                                   329
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  12Q GAIN MUTATED                                                             0
  12Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  12Q GAIN MUTATED                                                     0
  12Q GAIN WILD-TYPE                                                   6
D24V8, multiclass
                                                             clus
vv                                                            12Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     68
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            12Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      329
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D24V9, binary
                    cls
clus                   0   1
  12Q GAIN MUTATED    20  48
  12Q GAIN WILD-TYPE  59 277
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     20   48
  12Q GAIN WILD-TYPE   59  277
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                20                 59
  YES               48                277
D24V10, continuous
D24V11, continuous
D24V12, continuous

Clustering(25) Variable = 13Q GAIN MUTATION ANALYSIS
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED    28  20
  13Q GAIN WILD-TYPE 219 132
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                48                351 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                20                132 
$`13Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-6870 TCGA-BA-A4IF TCGA-BB-4225 TCGA-CN-4726 TCGA-CN-4728 
        9.30        14.83        29.42         4.60         4.67        20.15 
TCGA-CN-4729 TCGA-CN-4737 TCGA-CN-4742 TCGA-CN-5370 TCGA-CN-6013 TCGA-CN-6989 
       12.89        17.79        13.05         8.52        14.24        20.09 
TCGA-CN-6996 TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CQ-A4CH TCGA-CR-5247 
       14.20        15.91        11.44         5.75         9.96        11.77 
TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7380 
       11.64        12.46        39.16        47.34         3.45        19.92 
TCGA-CR-7390 TCGA-CV-5440 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6939 TCGA-CV-6956 
       29.82       107.51        54.74        90.12        21.90         7.13 
TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7247 
      126.15        18.81        12.66        71.21        31.36        18.97 
TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7437 TCGA-D6-6823 TCGA-D6-8569 TCGA-DQ-5629 
       25.08       100.57        16.64        23.05         4.21        16.96 
TCGA-DQ-5631 TCGA-F7-A50J TCGA-IQ-A61G TCGA-MT-A51W TCGA-MT-A51X TCGA-P3-A6T5 
       18.02        19.23        11.84         0.46         1.12        29.00 

$`13Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.19        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       42.35        57.93        17.10        23.84        20.48        53.79 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       57.44         6.25        21.17         2.07        12.62         3.72 
TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
        7.76        16.87        11.54         7.10         5.69         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        7.82         6.15        94.62         9.14         4.37        18.35 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.62        13.91        22.59        20.98        37.91 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 
       14.07        14.33        71.05        20.52         0.16         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4731 
       26.27        23.70        15.95        14.86        15.19        32.65 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       21.11        21.11        12.99        14.33        34.68        26.66 
TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       41.69        16.04        16.83         5.69        12.39        35.54 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.32        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 
       22.45         9.53        14.73        13.94        20.68        10.39 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       20.68         1.48        12.85         3.22         9.07         6.64 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
       13.94         7.36        10.45        12.95         3.91         3.68 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A641 
       13.08         1.51        14.70         7.40        17.29        12.07 
TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        2.70        48.20        39.68        21.50         2.93        54.58 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       46.75        29.46        45.99        10.42        11.21         4.24 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.38        32.88        34.75        32.38        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.24        14.99        26.79        48.03        45.30        33.11 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 
       16.73        43.04        29.62        28.83        31.82        11.61 
TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CI 
       20.15        17.92        18.02        12.92        12.85        19.99 
TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       84.23        54.67        37.87        26.27        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.54        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6492 
       11.90        10.22        11.34         7.69        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 
        9.27        47.18        40.93        35.84         3.09        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7382 
       29.23         0.99        31.96         9.17        34.06        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 
       17.13        32.78        47.01        27.06        12.89        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.58         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.95        35.41        29.95        48.39       139.43        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 
      129.21       108.33        47.28        19.20        17.95        94.88 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.50        91.53        80.12        17.06        13.35        23.05 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 
       86.83        48.59        60.49         7.07        43.23        21.07 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       62.43         9.60         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.73        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.38        15.09        30.08         6.08        53.95        65.82 
TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
       10.98         8.42        28.34         2.50         4.14        64.83 
TCGA-CV-7091 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
      111.16         7.99         9.01         5.26         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       12.92        21.80        10.75       114.97        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       47.47        36.00        26.20        17.13        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        57.47 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.85       210.97        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 
       22.85        25.94         0.07        34.09        14.89        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.94         3.52        16.27        84.49        19.76 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q 
        7.17       142.52         6.38        22.19        27.98       169.38 
TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       67.86         5.98        24.66        10.42        10.55         7.79 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 
       27.22        13.25        25.41         9.60         2.53        16.14 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
        5.06        18.67         3.48         3.68         3.42        58.45 
TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       35.54        33.86        14.04        18.90        25.48        20.45 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 
        9.83        12.13        12.10        10.65        11.18        18.54 
TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A61S TCGA-F7-A61V 
       16.11        21.63         0.49         3.02         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        0.46         0.43         0.20        13.38         1.91         4.37 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.22         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 
        0.79         0.82         0.36         1.61         0.33         1.08 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61H 
       34.75        15.95         4.01        14.50        19.33        13.55 
TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S 
        0.07        14.47         5.29        11.54        11.84         7.36 
TCGA-KU-A66T TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 
        6.90        12.89         1.84         3.65         3.68         8.35 
TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW 
       29.92        15.78        54.31        23.70        10.85        36.82 
TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T6 
       47.01        19.00        63.02        18.97         2.04        12.99 
TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       16.01        13.15        18.18 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              0.46               0.07 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
            126.15             210.97 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             16.80              16.11 
[1] "0.5 - 126.2 (16.8)" "0.1 - 211.0 (16.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
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        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D25V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  13Q GAIN MUTATED         1       10         9        20         1
  13Q GAIN WILD-TYPE      23       52        57       169         7
D25V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  13Q GAIN MUTATED     2  14  10  15
  13Q GAIN WILD-TYPE  37  89  74 113
D25V4, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  T1                2                 37
  T2               14                 89
  T3               10                 74
  T4               15                113
                    vv
clus                  N0  N1  N2  N3
  13Q GAIN MUTATED    14   7  14   0
  13Q GAIN WILD-TYPE 120  45 111   7
D25V5, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  N0               14                120
  N1                7                 45
  N2               14                111
  N3                0                  7
D25V6, binary
                    cls
clus                  0  1
  13Q GAIN MUTATED   12  6
  13Q GAIN WILD-TYPE 91 37
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED     12    6
  13Q GAIN WILD-TYPE   91   37
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  M0               12                 91
  MX                6                 37
D25V7, binary
                    cls
clus                   0   1
  13Q GAIN MUTATED    14  34
  13Q GAIN WILD-TYPE 102 254
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED     14   34
  13Q GAIN WILD-TYPE  102  254
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE               14                102
  MALE                 34                254
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  13Q GAIN MUTATED                                      48
  13Q GAIN WILD-TYPE                                   349
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  13Q GAIN MUTATED                                                             0
  13Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  13Q GAIN MUTATED                                                     0
  13Q GAIN WILD-TYPE                                                   6
D25V8, multiclass
                                                             clus
vv                                                            13Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     48
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            13Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      349
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D25V9, binary
                    cls
clus                   0   1
  13Q GAIN MUTATED    14  34
  13Q GAIN WILD-TYPE  65 291
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED     14   34
  13Q GAIN WILD-TYPE   65  291
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                14                 65
  YES               34                291
D25V10, continuous
D25V11, continuous
D25V12, continuous

Clustering(26) Variable = 14Q GAIN MUTATION ANALYSIS
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN MUTATED    66  52
  14Q GAIN WILD-TYPE 181 100
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
               118                281 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                52                100 
$`14Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF 
        9.30        17.10        12.62         3.72         7.76        29.42 
TCGA-BA-A6DA TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4723 TCGA-CN-4730 
       11.54        20.52         0.16         0.13        23.70        15.19 
TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-5356 TCGA-CN-5363 TCGA-CN-5366 TCGA-CN-5367 
       14.33        26.66        16.83         8.32        11.84        11.57 
TCGA-CN-6021 TCGA-CN-6994 TCGA-CN-A63T TCGA-CN-A63W TCGA-CQ-5323 TCGA-CQ-5326 
        9.07         3.91         7.40        11.44        48.20         2.93 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-6224 TCGA-CQ-6225 
       46.75        29.46         4.24        32.38        32.38        13.25 
TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CQ-A4C6 TCGA-CQ-A4CE 
        4.24        26.79        16.73        29.62        31.82        12.92 
TCGA-CQ-A4CG TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-7365 
       12.85        18.54        16.90        12.46        11.51        39.16 
TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       47.34         3.45        24.95         9.17        34.06        19.92 
TCGA-CR-7383 TCGA-CR-7388 TCGA-CR-7390 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5439 
       17.13        27.06        29.82       129.21       108.33        17.95 
TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6003 
      107.51        80.12        13.35        86.83        60.49        54.74 
TCGA-CV-6934 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6945 TCGA-CV-6950 
        2.14        26.43        11.24       126.08        12.03        15.09 
TCGA-CV-6954 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7178 
       65.82       126.15       111.16        18.81         5.26        71.21 
TCGA-CV-7180 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7254 
       10.75        47.47        31.36        26.20        17.13        47.97 
TCGA-CV-7255 TCGA-CV-7409 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
        2.10        17.85         9.67        22.85        25.08        25.94 
TCGA-CV-7429 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A45Q TCGA-CV-A6JE 
        3.52         7.17        16.64        22.19       169.38        24.66 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6825 TCGA-D6-A4Z9 
        7.79        27.22        25.41        23.05        16.14         3.68 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7592 TCGA-DQ-7593 
       35.54        16.96        14.04        18.90         9.83        12.13 
TCGA-F7-A50I TCGA-F7-A50J TCGA-HD-7753 TCGA-HD-7917 TCGA-IQ-A61E TCGA-IQ-A61J 
        3.02        19.23         0.16         1.22        19.33        14.47 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-P3-A5Q6 
        5.29        11.54         6.90         0.46         1.12        15.78 
TCGA-P3-A6SX TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T7 
       47.01        18.97         2.04        16.01 

$`14Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.19        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       42.35        57.93        23.84        20.48        53.79        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-A6D8 TCGA-BA-A6DB 
        6.25        21.17        14.83         2.07        16.87         7.10 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
        5.69         5.98         7.82         6.15        94.62         9.14 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        4.60         4.37        18.35        10.19        17.62        13.91 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       22.59        20.98        37.91        14.07        14.33        71.05 
TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       26.27        15.95         4.67        14.86        20.15        12.89 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4739 
       32.65        21.11        21.11        12.99        17.79        34.68 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       41.69        13.05        16.04         5.69        12.39        35.54 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       16.21        11.54        12.49         8.52        22.45         9.53 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       14.73        13.94        20.68        14.24        10.39        20.68 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        1.48        12.85         3.22         6.64        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
       10.45        20.09        12.95         3.68        14.20        13.08 
TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 
        1.51        14.70        17.29        15.91         5.75        12.07 
TCGA-CN-A642 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5332 
        2.70        39.68        21.50        54.58        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6228 TCGA-CQ-7063 
       11.21        28.60        32.88        34.75        14.99        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7071 TCGA-CQ-A4C7 TCGA-CQ-A4C9 
       45.30        33.11        43.04        28.83        11.61        20.15 
TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 
       17.92        18.02         9.96        19.99        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.67        37.87        26.27        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       34.52        36.99         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 
       11.64         7.69        15.75         9.27        47.18        40.93 
TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7382 
       35.84         3.09        29.23         0.99        31.96        26.17 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       32.78        47.01        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.58         7.10         5.13         5.95        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 
       29.95        48.39       139.43        17.16        47.28        19.20 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5976 
       94.88        76.50        91.53        17.06        23.05        48.59 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
        7.07        43.23        21.07        62.43         9.60        90.12 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6943 
        9.70         5.46        20.52         4.73        21.90        19.79 
TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 
       42.38        30.08         6.08        53.95        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7097 
        8.42        28.34         2.50         4.14        64.83        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         1.84        52.31        12.92        21.80 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7250 
      114.97        56.68         4.73        36.00        18.97        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
        4.96        11.87        36.13        18.41        57.47        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
      210.97        89.33         0.46         0.07        34.09       100.57 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 
       14.89        56.48       156.49        54.94        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-A45O TCGA-CV-A461 TCGA-CV-A6JD 
       19.76       142.52         6.38        27.98        67.86         5.98 
TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6826 
       10.42        10.55        13.25         9.60         2.53         5.06 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5630 
       18.67         3.48         4.21         3.42        58.45        33.86 
TCGA-DQ-5631 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       18.02        25.48        20.45        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A61S TCGA-F7-A61V 
       18.54        16.11        21.63         0.49         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        0.46         0.43         0.20        13.38         1.91         4.37 
TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.07         0.82         1.81         1.45         0.79         0.82 
TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 
        0.36         1.61         0.33         1.08        34.75        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61O 
        4.01        14.50        11.84        13.55         0.07        11.84 
TCGA-KU-A66S TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 
        7.36        12.89         1.84         3.65         3.68         8.35 
TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6T0 
       29.92        54.31        23.70        10.85        36.82        19.00 
TCGA-P3-A6T2 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T8 TCGA-QK-A64Z 
       63.02        29.00        12.99        13.15        18.18 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              0.13               0.07 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
            169.38             210.97 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             16.93              15.91 
[1] "0.1 - 169.4 (16.9)" "0.1 - 211.0 (15.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D26V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  14Q GAIN MUTATED         9       20        20        54         3
  14Q GAIN WILD-TYPE      15       42        46       135         5
D26V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  14Q GAIN MUTATED   10 31 25 40
  14Q GAIN WILD-TYPE 29 72 59 88
D26V4, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  T1               10                 29
  T2               31                 72
  T3               25                 59
  T4               40                 88
                    vv
clus                 N0 N1 N2 N3
  14Q GAIN MUTATED   41 14 38  2
  14Q GAIN WILD-TYPE 93 38 87  5
D26V5, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  N0               41                 93
  N1               14                 38
  N2               38                 87
  N3                2                  5
D26V6, binary
                    cls
clus                  0  1
  14Q GAIN MUTATED   30 11
  14Q GAIN WILD-TYPE 73 32
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     30   11
  14Q GAIN WILD-TYPE   73   32
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  M0               30                 73
  MX               11                 32
D26V7, binary
                    cls
clus                   0   1
  14Q GAIN MUTATED    39  81
  14Q GAIN WILD-TYPE  77 207
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     39   81
  14Q GAIN WILD-TYPE   77  207
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE               39                 77
  MALE                 81                207
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  14Q GAIN MUTATED                                     120
  14Q GAIN WILD-TYPE                                   277
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  14Q GAIN MUTATED                                                             0
  14Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  14Q GAIN MUTATED                                                     0
  14Q GAIN WILD-TYPE                                                   6
D26V8, multiclass
                                                             clus
vv                                                            14Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    120
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            14Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      277
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D26V9, binary
                    cls
clus                   0   1
  14Q GAIN MUTATED    21  99
  14Q GAIN WILD-TYPE  58 226
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     21   99
  14Q GAIN WILD-TYPE   58  226
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                21                 58
  YES               99                226
D26V10, continuous
D26V11, continuous
D26V12, continuous

Clustering(27) Variable = 15Q GAIN MUTATION ANALYSIS
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN MUTATED    36  26
  15Q GAIN WILD-TYPE 211 126
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                62                337 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                26                126 
$`15Q GAIN MUTATED`
TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-7861 TCGA-BB-8596 TCGA-C9-A47Z TCGA-CN-4729 
        2.07         3.72        10.19        71.05         0.16        12.89 
TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5356 TCGA-CN-5365 TCGA-CN-5366 
       17.79        34.68        26.66        16.83        11.54        11.84 
TCGA-CN-6010 TCGA-CN-6995 TCGA-CN-A63U TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7069 
       14.73         3.68        17.29        13.25        14.99        29.62 
TCGA-CQ-A4C9 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6484 TCGA-CR-6491 TCGA-CR-7364 
       20.15        18.54        16.90        11.64        11.51        47.18 
TCGA-CR-7365 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7390 TCGA-CV-6003 TCGA-CV-6934 
       39.16        34.06        19.92        29.82        54.74         2.14 
TCGA-CV-6959 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7101 TCGA-CV-7178 TCGA-CV-7235 
        8.42       126.15       111.16         5.26        71.21        56.68 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 
       47.97         2.10        36.13         9.67        22.85        25.08 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7427 TCGA-CV-7433 TCGA-CV-7437 TCGA-CV-A6JD 
       25.94         0.07       156.49        19.76        16.64         5.98 
TCGA-D6-6516 TCGA-D6-8569 TCGA-DQ-5629 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-F7-7848 
       25.41         4.21        16.96        14.04        18.90        18.54 
TCGA-H7-8501 TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-IQ-7632 
        1.91         0.16         1.22         1.61         1.08        14.50 
TCGA-MT-A67A TCGA-MT-A67G 
       12.89         3.68 

$`15Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.35        57.93        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 
       53.79        57.44         6.25        21.17        14.83        12.62 
TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD 
        7.76        29.42        16.87        11.54         7.10         5.69 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.98         7.82         6.15        94.62         9.14         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
        4.37        18.35        17.62        13.91        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8601 TCGA-C9-A480 TCGA-CN-4722 
       37.91        14.07        14.33        20.52         0.13        26.27 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 
       23.70        15.95         4.67        14.86        20.15        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4741 
       32.65        21.11        21.11        12.99        14.33        41.69 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
       13.05        16.04         5.69        12.39        35.54         8.32 
TCGA-CN-5364 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       16.21        11.57        12.49         8.52        22.45         9.53 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       13.94        20.68        14.24        10.39        20.68         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
       12.85         3.22         9.07         6.64        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 
       10.45        20.09        12.95         3.91        14.20        13.08 
TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y 
        1.51        14.70         7.40        15.91        11.44         5.75 
TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
       12.07         2.70        48.20        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       54.58        46.75        29.46        45.99        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.24        28.60        32.38        32.88        34.75        32.38 
TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
        4.24        26.79        48.03        45.30        33.11        16.73 
TCGA-CQ-7068 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4CB TCGA-CQ-A4CD 
       43.04        28.83        31.82        11.61        17.92        18.02 
TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 
       12.92        12.85         9.96        19.99        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.67        37.87        26.27        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       34.52        36.99         6.02        11.90        10.22        11.34 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7367 TCGA-CR-7368 
        7.69        12.46        15.75         9.27        47.34        40.93 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.45         3.09        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       31.96         9.17        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.06        12.89        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.58         7.10         5.13         5.95        35.41        29.95 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.39       139.43        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95       107.51        94.88        76.50        91.53 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       80.12        17.06        13.35        23.05        86.83        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       60.49         7.07        43.23        21.07        62.43         9.60 
TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
       90.12         9.70         5.46        20.52         4.73        21.90 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.38 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.09        30.08         6.08        53.95        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7095 
        7.13        28.34         2.50         4.14        64.83        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
       12.66         7.99         9.01         1.84        52.31        12.92 
TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       21.80        10.75       114.97         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.36        26.20        18.97        17.13        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       11.87        18.41        57.47        35.54        17.85       210.97 
TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       89.33         0.46        34.09       100.57        14.89        56.48 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-7435 
       54.94         3.52        16.27        84.49         7.17       142.52 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JE 
        6.38        22.19        27.98       169.38        67.86        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
       10.42        10.55         7.79        27.22        13.25         9.60 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
       23.05         2.53        16.14         5.06        18.67         3.48 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 
        3.68         3.42        58.45        35.54        33.86        18.02 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       25.48        20.45         9.83        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J 
       11.18        16.11        21.63         0.49         3.02        19.23 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 
        0.10        12.62         0.46         0.43         0.20        13.38 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        4.37         0.07         0.82         1.81         1.45         0.79 
TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A634 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        0.82         0.36         0.33        34.75        15.95         4.01 
TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K 
       19.33        11.84        13.55         0.07        14.47         5.29 
TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X 
       11.54        11.84         7.36         6.90         0.46         1.12 
TCGA-MT-A67D TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA 
        1.84         3.65         8.35        29.92        15.78        54.31 
TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 
       23.70        10.85        36.82        47.01        19.00        63.02 
TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 
       18.97         2.04        29.00        12.99        16.01        13.15 
TCGA-QK-A64Z 
       18.18 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              0.07               0.07 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
            156.49             210.97 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
            16.735             16.110 
[1] "0.1 - 156.5 (16.7)" "0.1 - 211.0 (16.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
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        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D27V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  15Q GAIN MUTATED         4       10         9        31         2
  15Q GAIN WILD-TYPE      20       52        57       158         6
D27V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  15Q GAIN MUTATED     7  17   6  26
  15Q GAIN WILD-TYPE  32  86  78 102
D27V4, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  T1                7                 32
  T2               17                 86
  T3                6                 78
  T4               26                102
                    vv
clus                  N0  N1  N2  N3
  15Q GAIN MUTATED    24   8  16   1
  15Q GAIN WILD-TYPE 110  44 109   6
D27V5, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  N0               24                110
  N1                8                 44
  N2               16                109
  N3                1                  6
D27V6, binary
                    cls
clus                  0  1
  15Q GAIN MUTATED   15  7
  15Q GAIN WILD-TYPE 88 36
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED     15    7
  15Q GAIN WILD-TYPE   88   36
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  M0               15                 88
  MX                7                 36
D27V7, binary
                    cls
clus                   0   1
  15Q GAIN MUTATED    19  43
  15Q GAIN WILD-TYPE  97 245
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED     19   43
  15Q GAIN WILD-TYPE   97  245
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE               19                 97
  MALE                 43                245
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  15Q GAIN MUTATED                                      62
  15Q GAIN WILD-TYPE                                   335
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  15Q GAIN MUTATED                                                             0
  15Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  15Q GAIN MUTATED                                                     0
  15Q GAIN WILD-TYPE                                                   6
D27V8, multiclass
                                                             clus
vv                                                            15Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     62
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            15Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      335
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D27V9, binary
                    cls
clus                   0   1
  15Q GAIN MUTATED    11  51
  15Q GAIN WILD-TYPE  68 274
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED     11   51
  15Q GAIN WILD-TYPE   68  274
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                11                 68
  YES               51                274
D27V10, continuous
D27V11, continuous
D27V12, continuous

Clustering(28) Variable = 16P GAIN MUTATION ANALYSIS
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN MUTATED    44  35
  16P GAIN WILD-TYPE 203 117
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                79                320 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                35                117 
$`16P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 
        9.30        17.10        57.44         6.25        21.17        14.83 
TCGA-BA-6871 TCGA-BA-6873 TCGA-BA-A4IF TCGA-C9-A47Z TCGA-CN-4728 TCGA-CN-4730 
        2.07         3.72        29.42         0.16        20.15        15.19 
TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-5356 TCGA-CN-6013 TCGA-CN-6020 TCGA-CN-6022 
       17.79        34.68        16.83        14.24         3.22         6.64 
TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-A63U TCGA-CQ-5326 TCGA-CQ-5329 TCGA-CQ-6220 
        3.91        14.20        17.29         2.93        46.75        32.38 
TCGA-CQ-6223 TCGA-CQ-7067 TCGA-CR-5247 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6481 
       34.75        16.73        11.77        16.90         6.02        10.22 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7379 TCGA-CR-7380 
       39.16        47.34         3.45        24.95        34.06        19.92 
TCGA-CR-7388 TCGA-CR-7390 TCGA-CV-5439 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6003 
       27.06        29.82        17.95        60.49         7.07        54.74 
TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6954 
       90.12        20.52        21.90        11.24        12.03        65.82 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7180 TCGA-CV-7242 TCGA-CV-7243 
      111.16        18.81         7.99        10.75        36.00        31.36 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7409 TCGA-CV-7415 
       26.20        17.13         2.10        18.41        17.85        22.85 
TCGA-CV-7423 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-A461 TCGA-CX-7086 TCGA-D6-6516 
      100.57        19.76       142.52        67.86         7.79        25.41 
TCGA-D6-6823 TCGA-D6-8569 TCGA-DQ-5625 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-F7-A50J 
       23.05         4.21        35.54        18.02        14.04        19.23 
TCGA-F7-A623 TCGA-HD-8634 TCGA-IQ-7631 TCGA-IQ-A61L TCGA-MT-A51W TCGA-P3-A6T4 
        0.20         0.79         4.01        11.54         0.46         2.04 
TCGA-P3-A6T5 
       29.00 

$`16P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.19        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6872 
       42.35        57.93        23.84        20.48        53.79        12.62 
TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
        7.76        16.87        11.54         7.10         5.69         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.82         6.15        94.62         9.14         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.35        10.19        17.62        13.91        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 
       37.91        14.07        14.33        71.05        20.52         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 
       26.27        23.70        15.95         4.67        14.86        12.89 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4740 
       32.65        21.11        21.11        12.99        14.33        26.66 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       41.69        13.05        16.04         5.69        12.39        35.54 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.32        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        22.45         9.53        14.73        13.94        20.68 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6023 
       10.39        20.68         1.48        12.85         9.07        13.94 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6997 
        7.36        10.45        20.09        12.95         3.68        13.08 
TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y 
        1.51        14.70         7.40        15.91        11.44         5.75 
TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 
       12.07         2.70        48.20        39.68        21.50        54.58 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        45.99        10.42        11.21         4.24        28.60 
TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.88        32.38        13.25         4.24        14.99        26.79 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 
       48.03        45.30        33.11        43.04        29.62        28.83 
TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE 
       31.82        11.61        20.15        17.92        18.02        12.92 
TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       12.85         9.96        19.99        84.23        54.67        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.27        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6480 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       18.54        11.90        11.34        11.64         7.69        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 
       11.51        15.75         9.27        47.18        40.93        35.84 
TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7382 
        3.09        29.23         0.99        31.96         9.17        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 
       17.13        32.78        47.01        12.89        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.58         7.10         5.13         5.95 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.95        48.39       139.43        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
      108.33        47.28        19.20       107.51        94.88        76.50 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       91.53        80.12        17.06        13.35        23.05        86.83 
TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 
       48.59        43.23        21.07        62.43         9.60         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 
        9.70         5.46         4.73        26.43       126.08        19.79 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 
       42.38        15.09        30.08         6.08        53.95        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.42        28.34         2.50         4.14        64.83 
TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
      126.15        12.66         9.01         5.26         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       12.92        21.80        71.21       114.97        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7247 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       47.47        18.97        95.34         4.96        11.87        47.97 
TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        57.47        35.54       210.97        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 
        0.46        25.08        25.94         0.07        34.09        14.89 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.94         3.52        16.27        84.49 
TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q 
        7.17        16.64         6.38        22.19        27.98       169.38 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 
        5.98        24.66        10.42        10.55        27.22        13.25 
TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        9.60         2.53        16.14         5.06        18.67         3.48 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7589 
        3.68         3.42        58.45        16.96        33.86        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       25.48        20.45         9.83        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I 
       11.18        18.54        16.11        21.63         0.49         3.02 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 
        0.10        12.62         0.46         0.43        13.38         1.91 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        4.37         0.07         0.16         0.82         1.22         1.81 
TCGA-HD-8314 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 
        1.45         0.82         0.36         1.61         0.33         1.08 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H 
       34.75        15.95        14.50        19.33        11.84        13.55 
TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T 
        0.07        14.47         5.29        11.84         7.36         6.90 
TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 
        1.12        12.89         1.84         3.65         3.68         8.35 
TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW 
       29.92        15.78        54.31        23.70        10.85        36.82 
TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T6 TCGA-P3-A6T7 
       47.01        19.00        63.02        18.97        12.99        16.01 
TCGA-P3-A6T8 TCGA-QK-A64Z 
       13.15        18.18 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              0.16               0.07 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
            142.52             210.97 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
            17.850             15.765 
[1] "0.2 - 142.5 (17.9)" "0.1 - 211.0 (15.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D28V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  16P GAIN MUTATED         6       14        12        31         3
  16P GAIN WILD-TYPE      18       48        54       158         5
D28V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16P GAIN MUTATED     7  20  15  24
  16P GAIN WILD-TYPE  32  83  69 104
D28V4, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  T1                7                 32
  T2               20                 83
  T3               15                 69
  T4               24                104
                    vv
clus                  N0  N1  N2  N3
  16P GAIN MUTATED    29  10  19   2
  16P GAIN WILD-TYPE 105  42 106   5
D28V5, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  N0               29                105
  N1               10                 42
  N2               19                106
  N3                2                  5
D28V6, binary
                    cls
clus                  0  1
  16P GAIN MUTATED   15  5
  16P GAIN WILD-TYPE 88 38
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     15    5
  16P GAIN WILD-TYPE   88   38
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  M0               15                 88
  MX                5                 38
D28V7, binary
                    cls
clus                   0   1
  16P GAIN MUTATED    25  56
  16P GAIN WILD-TYPE  91 232
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     25   56
  16P GAIN WILD-TYPE   91  232
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE               25                 91
  MALE                 56                232
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  16P GAIN MUTATED                                      81
  16P GAIN WILD-TYPE                                   316
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  16P GAIN MUTATED                                                             0
  16P GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  16P GAIN MUTATED                                                     0
  16P GAIN WILD-TYPE                                                   6
D28V8, multiclass
                                                             clus
vv                                                            16P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     81
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            16P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      316
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D28V9, binary
                    cls
clus                   0   1
  16P GAIN MUTATED    17  64
  16P GAIN WILD-TYPE  62 261
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     17   64
  16P GAIN WILD-TYPE   62  261
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                17                 62
  YES               64                261
D28V10, continuous
D28V11, continuous
D28V12, continuous

Clustering(29) Variable = 16Q GAIN MUTATION ANALYSIS
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN MUTATED    43  40
  16Q GAIN WILD-TYPE 204 112
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                83                316 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                40                112 
$`16Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 TCGA-BA-A4IF 
        9.30         6.25        14.83         2.07         3.72        29.42 
TCGA-BA-A6DA TCGA-C9-A47Z TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4737 TCGA-CN-4739 
       11.54         0.16        20.15        15.19        17.79        34.68 
TCGA-CN-6013 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6996 
       14.24         3.22         6.64        20.09         3.91        14.20 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-7067 
       46.75        29.46        32.38        34.75        13.25        16.73 
TCGA-CR-5247 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-7365 TCGA-CR-7372 TCGA-CR-7374 
       11.77        16.90         6.02        39.16        24.95         0.99 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7388 TCGA-CR-7390 TCGA-CV-5439 TCGA-CV-5977 
       34.06        19.92        27.06        29.82        17.95        60.49 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6939 
        7.07        43.23        54.74        90.12        20.52        21.90 
TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6954 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7099 
       11.24        12.03        65.82       111.16        18.81         7.99 
TCGA-CV-7102 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7242 TCGA-CV-7243 
        1.84        21.80        71.21        10.75        36.00        31.36 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7415 
       26.20        17.13        18.41        57.47        17.85        22.85 
TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7433 TCGA-CV-7435 TCGA-D6-6516 TCGA-D6-6823 
       25.08       100.57        19.76       142.52        25.41        23.05 
TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-F7-A50J TCGA-F7-A623 
        3.48         4.21        18.02        14.04        19.23         0.20 
TCGA-HD-7753 TCGA-HD-8314 TCGA-HD-8634 TCGA-IQ-7631 TCGA-IQ-A61K TCGA-IQ-A61L 
        0.16         1.45         0.79         4.01         5.29        11.54 
TCGA-MT-A51W TCGA-MT-A51X TCGA-P3-A5Q6 TCGA-P3-A6T4 TCGA-P3-A6T5 
        0.46         1.12        15.78         2.04        29.00 

$`16Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.19        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       42.35        57.93        17.10        23.84        20.48        53.79 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DB 
       57.44        21.17        12.62         7.76        16.87         7.10 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
        5.69         5.98         7.82         6.15        94.62         9.14 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        4.60         4.37        18.35        10.19        17.62        13.91 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       22.59        20.98        37.91        14.07        14.33        71.05 
TCGA-BB-8601 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       20.52         0.13        26.27        23.70        15.95         4.67 
TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
       14.86        12.89        32.65        21.11        21.11        12.99 
TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       14.33        26.66        41.69        13.05        16.04        16.83 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        35.54         8.32        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        22.45         9.53 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       14.73        13.94        20.68        10.39        20.68         1.48 
TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6992 
       12.85         9.07        13.94         7.36        10.45        12.95 
TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U 
        3.68        13.08         1.51        14.70         7.40        17.29 
TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 
       15.91        11.44         5.75        12.07         2.70        48.20 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5332 
       39.68        21.50         2.93        54.58        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 
       11.21         4.24        28.60        32.88        32.38         4.24 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 
       14.99        26.79        48.03        45.30        33.11        43.04 
TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB 
       29.62        28.83        31.82        11.61        20.15        17.92 
TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 
       18.02        12.92        12.85         9.96        19.99        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.67        37.87        26.27        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       34.52        36.99        18.54        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.69        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       47.18        47.34        40.93        35.84         3.45         3.09 
TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       29.23        31.96         9.17        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       47.01        12.89        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.58         7.10         5.13         5.95        35.41        29.95 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.39       139.43        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       19.20       107.51        94.88        76.50        91.53        80.12 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-6433 
       17.06        13.35        23.05        86.83        48.59        21.07 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 
       62.43         9.60         2.14         9.70         5.46         4.73 
TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
       26.43       126.08        19.79        42.38        15.09        30.08 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
        6.08        53.95        10.98         7.13         8.42        28.34 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7100 
        2.50         4.14        64.83       126.15        12.66         9.01 
TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
        5.26        52.31        12.92       114.97        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7247 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       47.47        18.97        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
        2.10        36.13        35.54       210.97        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 
        0.46        25.94         0.07        34.09        14.89        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 
      156.49        54.94         3.52        16.27        84.49         7.17 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 
       16.64         6.38        22.19        27.98       169.38        67.86 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        5.98        24.66        10.42        10.55         7.79        27.22 
TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
       13.25         9.60         2.53        16.14         5.06        18.67 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        3.68         3.42        58.45        35.54        16.96        33.86 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        25.48        20.45         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G 
       10.65        11.18        18.54        16.11        21.63         0.49 
TCGA-F7-A50I TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 
        3.02         0.10        12.62         0.46         0.43        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        1.91         4.37         0.07         0.82         1.22         1.81 
TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 
        0.82         0.36         1.61         0.33         1.08        34.75 
TCGA-IQ-7630 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I 
       15.95        14.50        19.33        11.84        13.55         0.07 
TCGA-IQ-A61J TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A67A TCGA-MT-A67D 
       14.47        11.84         7.36         6.90        12.89         1.84 
TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE 
        3.65         3.68         8.35        29.92        54.31        23.70 
TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 
       10.85        36.82        47.01        19.00        63.02        18.97 
TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       12.99        16.01        13.15        18.18 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              0.16               0.07 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            142.52             210.97 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             17.85              15.95 
[1] "0.2 - 142.5 (17.9)" "0.1 - 211.0 (15.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
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"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D29V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  16Q GAIN MUTATED         7       17        11        36         3
  16Q GAIN WILD-TYPE      17       45        55       153         5
D29V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16Q GAIN MUTATED    10  24  15  25
  16Q GAIN WILD-TYPE  29  79  69 103
D29V4, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  T1               10                 29
  T2               24                 79
  T3               15                 69
  T4               25                103
                    vv
clus                  N0  N1  N2  N3
  16Q GAIN MUTATED    30   9  25   2
  16Q GAIN WILD-TYPE 104  43 100   5
D29V5, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  N0               30                104
  N1                9                 43
  N2               25                100
  N3                2                  5
D29V6, binary
                    cls
clus                  0  1
  16Q GAIN MUTATED   18  5
  16Q GAIN WILD-TYPE 85 38
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED     18    5
  16Q GAIN WILD-TYPE   85   38
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  M0               18                 85
  MX                5                 38
D29V7, binary
                    cls
clus                   0   1
  16Q GAIN MUTATED    30  55
  16Q GAIN WILD-TYPE  86 233
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED     30   55
  16Q GAIN WILD-TYPE   86  233
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE               30                 86
  MALE                 55                233
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  16Q GAIN MUTATED                                      84
  16Q GAIN WILD-TYPE                                   313
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  16Q GAIN MUTATED                                                             0
  16Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  16Q GAIN MUTATED                                                     1
  16Q GAIN WILD-TYPE                                                   5
D29V8, multiclass
                                                             clus
vv                                                            16Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     84
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            16Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      313
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          5
D29V9, binary
                    cls
clus                   0   1
  16Q GAIN MUTATED    17  68
  16Q GAIN WILD-TYPE  62 257
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED     17   68
  16Q GAIN WILD-TYPE   62  257
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                17                 62
  YES               68                257
D29V10, continuous
D29V11, continuous
D29V12, continuous

Clustering(30) Variable = 17P GAIN MUTATION ANALYSIS
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN MUTATED    31  20
  17P GAIN WILD-TYPE 216 132
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                51                348 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                20                132 
$`17P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BB-4225 TCGA-BB-8601 
        9.30        12.62         7.76        29.42         4.60        20.52 
TCGA-C9-A47Z TCGA-CN-4728 TCGA-CN-5356 TCGA-CN-5366 TCGA-CN-5370 TCGA-CN-6023 
        0.16        20.15        16.83        11.84         8.52        13.94 
TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-A63U TCGA-CQ-5329 TCGA-CQ-6229 TCGA-CQ-A4CE 
       20.09         3.91        17.29        46.75        26.79        12.92 
TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-6478 TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7370 
       11.77        58.42         6.02        12.46        39.16         3.45 
TCGA-CR-7383 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 
       17.13        48.39       139.43       129.21       108.33       107.51 
TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6945 
       60.49        54.74        90.12        26.43        11.24        12.03 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7248 
       15.09        30.08         4.14        18.81         5.26        17.13 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7414 TCGA-F7-8298 TCGA-F7-A50I TCGA-HD-7917 
       47.97        36.13         0.46        16.11         3.02         1.22 
TCGA-IQ-A61L TCGA-IQ-A61O TCGA-P3-A6T3 
       11.54        11.84        18.97 

$`17P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.19        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       42.35        57.93        17.10        23.84        20.48        53.79 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 
       57.44         6.25        21.17        14.83         2.07         3.72 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF 
       16.87        11.54         7.10         5.69         5.98         7.82 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        6.15        94.62         9.14         4.37        18.35        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.62        13.91        22.59        20.98        37.91        14.07 
TCGA-BB-7872 TCGA-BB-8596 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       14.33        71.05         0.13        26.27        23.70        15.95 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        4.67        14.86        12.89        15.19        32.65        21.11 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       21.11        12.99        17.79        14.33        34.68        26.66 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       41.69        13.05        16.04         5.69        12.39        35.54 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5373 
        8.32        16.21        11.54        11.57        12.49        22.45 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.53        14.73        13.94        20.68        14.24        10.39 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       20.68         1.48        12.85         3.22         9.07         6.64 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        7.36        10.45        12.95         3.68        14.20        13.08 
TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y 
        1.51        14.70         7.40        15.91        11.44         5.75 
TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
       12.07         2.70        48.20        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       54.58        29.46        45.99        10.42        11.21         4.24 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.38        32.88        34.75        32.38        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
        4.24        14.99        48.03        45.30        33.11        16.73 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 
       43.04        29.62        28.83        31.82        11.61        20.15 
TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 
       17.92        18.02        12.85         9.96        19.99        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.67        37.87        26.27        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       36.99        18.54        16.90        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
       11.64         7.69        11.51        15.75         9.27        47.18 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       47.34        40.93        35.84         3.09        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.06        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.58         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 
        5.95        35.41        29.95        17.16        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       17.95        94.88        76.50        91.53        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 
       13.35        23.05        86.83        48.59         7.07        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       21.07        62.43         9.60         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 
       20.52         4.73        21.90       126.08        19.79        42.38 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.95        65.82        10.98         7.13         8.42 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 
       28.34         2.50        64.83       126.15       111.16        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         1.84        52.31        12.92        21.80 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.97        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7250 TCGA-CV-7252 
       36.00        31.36        26.20        18.97        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
       11.87         2.10        18.41        57.47        35.54        17.85 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
      210.97        89.33         9.67        22.85        25.08        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.57        14.89        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.94         3.52        16.27        84.49        19.76         7.17 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q 
      142.52        16.64         6.38        22.19        27.98       169.38 
TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       67.86         5.98        24.66        10.42        10.55         7.79 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        25.41         9.60        23.05         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
       16.14         5.06        18.67         3.48         4.21         3.68 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        3.42        58.45        35.54        16.96        33.86        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        25.48        20.45         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8489 TCGA-F7-A50G 
       12.10        10.65        11.18        18.54        21.63         0.49 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 
       19.23         0.10        12.62         0.46         0.43         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
       13.38         1.91         4.37         0.07         0.16         0.82 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 
        1.81         1.45         0.79         0.82         0.36         1.61 
TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.33         1.08        34.75        15.95         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K 
       19.33        11.84        13.55         0.07        14.47         5.29 
TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D 
        7.36         6.90         0.46         1.12        12.89         1.84 
TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA 
        3.65         3.68         8.35        29.92        15.78        54.31 
TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 
       23.70        10.85        36.82        47.01        19.00        63.02 
TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
        2.04        29.00        12.99        16.01        13.15        18.18 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              0.16               0.07 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
            139.43             210.97 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             16.83              16.09 
[1] "0.2 - 139.4 (16.8)" "0.1 - 211.0 (16.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D30V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  17P GAIN MUTATED         2        9        12        21         0
  17P GAIN WILD-TYPE      22       53        54       168         8
D30V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17P GAIN MUTATED     2  15  14  13
  17P GAIN WILD-TYPE  37  88  70 115
D30V4, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  T1                2                 37
  T2               15                 88
  T3               14                 70
  T4               13                115
                    vv
clus                  N0  N1  N2  N3
  17P GAIN MUTATED    16   8  16   0
  17P GAIN WILD-TYPE 118  44 109   7
D30V5, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  N0               16                118
  N1                8                 44
  N2               16                109
  N3                0                  7
D30V6, binary
                    cls
clus                  0  1
  17P GAIN MUTATED   12  5
  17P GAIN WILD-TYPE 91 38
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED     12    5
  17P GAIN WILD-TYPE   91   38
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  M0               12                 91
  MX                5                 38
D30V7, binary
                    cls
clus                   0   1
  17P GAIN MUTATED    12  39
  17P GAIN WILD-TYPE 104 249
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED     12   39
  17P GAIN WILD-TYPE  104  249
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  FEMALE               12                104
  MALE                 39                249
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  17P GAIN MUTATED                                      50
  17P GAIN WILD-TYPE                                   347
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  17P GAIN MUTATED                                                             1
  17P GAIN WILD-TYPE                                                           0
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  17P GAIN MUTATED                                                     0
  17P GAIN WILD-TYPE                                                   6
D30V8, multiclass
                                                             clus
vv                                                            17P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     50
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            17P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      347
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D30V9, binary
                    cls
clus                   0   1
  17P GAIN MUTATED    11  40
  17P GAIN WILD-TYPE  68 285
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED     11   40
  17P GAIN WILD-TYPE   68  285
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                11                 68
  YES               40                285
D30V10, continuous
D30V11, continuous
D30V12, continuous

Clustering(31) Variable = 17Q GAIN MUTATION ANALYSIS
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN MUTATED    39  28
  17Q GAIN WILD-TYPE 208 124
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                67                332 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                28                124 
$`17Q GAIN MUTATED`
TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BB-4225 TCGA-BB-8601 TCGA-C9-A47Z 
       12.62         7.76        29.42         4.60        20.52         0.16 
TCGA-CN-4728 TCGA-CN-4737 TCGA-CN-5356 TCGA-CN-5359 TCGA-CN-5366 TCGA-CN-5370 
       20.15        17.79        16.83        12.39        11.84         8.52 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-A63U 
        6.64        13.94        10.45        20.09         3.91        17.29 
TCGA-CN-A63W TCGA-CN-A641 TCGA-CQ-6225 TCGA-CQ-7069 TCGA-CQ-A4C9 TCGA-CQ-A4CE 
       11.44        12.07        13.25        29.62        20.15        12.92 
TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-6473 TCGA-CR-6478 TCGA-CR-7365 TCGA-CR-7370 
       11.77        58.42        36.99         6.02        39.16         3.45 
TCGA-CR-7383 TCGA-CR-7390 TCGA-CR-7399 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5432 
       17.13        29.82         5.95        48.39       139.43       129.21 
TCGA-CV-5440 TCGA-CV-5970 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6940 
      107.51        13.35        60.49        54.74        90.12        26.43 
TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6962 
       11.24        12.03        15.09        30.08         6.08         4.14 
TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7254 
       18.81         5.26         1.84        17.13        95.34        47.97 
TCGA-CV-7261 TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7424 TCGA-D6-8569 TCGA-DQ-7588 
       36.13        22.85         0.07        14.89         4.21        14.04 
TCGA-H7-8502 TCGA-HD-7753 TCGA-HD-7917 TCGA-IQ-A61L TCGA-IQ-A61O TCGA-MT-A67D 
        4.37         0.16         1.22        11.54        11.84         1.84 
TCGA-P3-A6T7 
       16.01 

$`17Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.35        57.93        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.79        57.44         6.25        21.17        14.83         2.07 
TCGA-BA-6873 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
        3.72        16.87        11.54         7.10         5.69         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        7.82         6.15        94.62         9.14         4.37        18.35 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.62        13.91        22.59        20.98        37.91 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       14.07        14.33        71.05         0.13        26.27        23.70 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
       15.95         4.67        14.86        12.89        15.19        32.65 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       21.11        21.11        12.99        14.33        34.68        26.66 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 
       41.69        13.05        16.04         5.69        35.54         8.32 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5373 TCGA-CN-5374 
       16.21        11.54        11.57        12.49        22.45         9.53 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       14.73        13.94        20.68        14.24        10.39        20.68 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6024 TCGA-CN-6992 
        1.48        12.85         3.22         9.07         7.36        12.95 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T 
        3.68        14.20        13.08         1.51        14.70         7.40 
TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
       15.91         5.75         2.70        48.20        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        54.58        46.75        29.46        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.24        28.60        32.38        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       32.38         4.24        14.99        26.79        48.03        45.30 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 
       33.11        16.73        43.04        28.83        31.82        11.61 
TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 
       17.92        18.02        12.85         9.96        19.99        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.67        37.87        26.27        50.01        39.52        34.52 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       18.54        16.90        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.69        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       47.34        40.93        35.84         3.09        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 
       32.78        47.01        27.06        12.89        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 
       29.85        29.52        30.58         7.10         5.13        35.41 
TCGA-CR-7402 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       29.95        17.16       108.33        47.28        19.20        17.95 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 
       94.88        76.50        91.53        80.12        17.06        23.05 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 
       86.83        48.59         7.07        43.23        21.07        62.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
        9.60         2.14         9.70         5.46        20.52         4.73 
TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6953 TCGA-CV-6954 
       21.90       126.08        19.79        42.38        53.95        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 
       10.98         7.13         8.42        28.34         2.50        64.83 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7103 
      126.15       111.16        12.66         7.99         9.01        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.92        21.80        71.21        10.75       114.97        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.36        26.20        18.97 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
        4.96        11.87         2.10        18.41        57.47        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 
       17.85       210.97        89.33         9.67         0.46        25.08 
TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       25.94        34.09       100.57        56.48       156.49        54.94 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.52        16.27        84.49        19.76         7.17       142.52 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 
       16.64         6.38        22.19        27.98       169.38        67.86 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        5.98        24.66        10.42        10.55         7.79        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        25.41         9.60        23.05         2.53        16.14 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
        5.06        18.67         3.48         3.68         3.42        58.45 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 
       35.54        16.96        33.86        18.02        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       20.45         9.83        12.13        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J 
       18.54        16.11        21.63         0.49         3.02        19.23 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 
        0.10        12.62         0.46         0.43         0.20        13.38 
TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        1.91         0.07         0.82         1.81         1.45         0.79 
TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 
        0.82         0.36         1.61         0.33         1.08        34.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H 
       15.95         4.01        14.50        19.33        11.84        13.55 
TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W 
        0.07        14.47         5.29         7.36         6.90         0.46 
TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 
        1.12        12.89         3.65         3.68         8.35        29.92 
TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX 
       15.78        54.31        23.70        10.85        36.82        47.01 
TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 
       19.00        63.02        18.97         2.04        29.00        12.99 
TCGA-P3-A6T8 TCGA-QK-A64Z 
       13.15        18.18 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              0.07               0.07 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            139.43             210.97 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             13.94              16.80 
[1] "0.1 - 139.4 (13.9)" "0.1 - 211.0 (16.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D31V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  17Q GAIN MUTATED         2        9        13        34         0
  17Q GAIN WILD-TYPE      22       53        53       155         8
D31V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17Q GAIN MUTATED     2  17  18  21
  17Q GAIN WILD-TYPE  37  86  66 107
D31V4, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  T1                2                 37
  T2               17                 86
  T3               18                 66
  T4               21                107
                    vv
clus                  N0  N1  N2  N3
  17Q GAIN MUTATED    18  10  26   0
  17Q GAIN WILD-TYPE 116  42  99   7
D31V5, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  N0               18                116
  N1               10                 42
  N2               26                 99
  N3                0                  7
D31V6, binary
                    cls
clus                  0  1
  17Q GAIN MUTATED   17  8
  17Q GAIN WILD-TYPE 86 35
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     17    8
  17Q GAIN WILD-TYPE   86   35
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  M0               17                 86
  MX                8                 35
D31V7, binary
                    cls
clus                   0   1
  17Q GAIN MUTATED    15  52
  17Q GAIN WILD-TYPE 101 236
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     15   52
  17Q GAIN WILD-TYPE  101  236
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE               15                101
  MALE                 52                236
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  17Q GAIN MUTATED                                      66
  17Q GAIN WILD-TYPE                                   331
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  17Q GAIN MUTATED                                                             1
  17Q GAIN WILD-TYPE                                                           0
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  17Q GAIN MUTATED                                                     0
  17Q GAIN WILD-TYPE                                                   6
D31V8, multiclass
                                                             clus
vv                                                            17Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     66
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            17Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      331
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D31V9, binary
                    cls
clus                   0   1
  17Q GAIN MUTATED    12  55
  17Q GAIN WILD-TYPE  67 270
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     12   55
  17Q GAIN WILD-TYPE   67  270
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                12                 67
  YES               55                270
D31V10, continuous
D31V11, continuous
D31V12, continuous

Clustering(32) Variable = 18P GAIN MUTATION ANALYSIS
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN MUTATED    53  38
  18P GAIN WILD-TYPE 194 114
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                91                308 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                38                114 
$`18P GAIN MUTATED`
TCGA-BA-4076 TCGA-BA-5151 TCGA-BA-5555 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 
       13.64        23.74        17.10        53.79        57.44        21.17 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        2.07        12.62         3.72        94.62         9.14         4.60 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7870 TCGA-C9-A47Z TCGA-CN-4728 TCGA-CN-4730 
       10.19        17.62        37.91         0.16        20.15        15.19 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-5363 TCGA-CN-5366 TCGA-CN-6012 TCGA-CN-6020 
       12.99        17.79         8.32        11.84        20.68         3.22 
TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63W 
        6.64         7.36        10.45         7.40        17.29        11.44 
TCGA-CN-A641 TCGA-CQ-5332 TCGA-CQ-6227 TCGA-CQ-7067 TCGA-CQ-A4C9 TCGA-CR-5247 
       12.07        10.42         4.24        16.73        20.15        11.77 
TCGA-CR-6467 TCGA-CR-6482 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7370 
       58.42        11.34         9.27        47.18        39.16         3.45 
TCGA-CR-7372 TCGA-CR-7390 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       24.95        29.82         5.95        35.41        29.95        48.39 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5973 TCGA-CV-5977 
      129.21       108.33       107.51        94.88        86.83        60.49 
TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6441 TCGA-CV-6935 TCGA-CV-6941 TCGA-CV-6945 
       43.23        21.07         9.60         9.70        11.24        12.03 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7180 
       15.09        30.08         4.14         5.26         1.84        10.75 
TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7406 TCGA-CV-7409 
       31.36        18.97        11.87         2.10        57.47        17.85 
TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 
       22.85         0.07         7.17       142.52        16.64        22.19 
TCGA-CV-A461 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-DQ-7595 
       67.86         3.48         4.21        18.02        25.48        10.65 
TCGA-H7-8502 TCGA-HD-A634 TCGA-IQ-A61G TCGA-IQ-A61K TCGA-KU-A66T TCGA-P3-A5Q6 
        4.37         0.33        11.84         5.29         6.90        15.78 
TCGA-P3-A6T3 
       18.97 

$`18P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5152 
       15.19         9.30        37.28         9.07         8.15        42.35 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-7269 
       57.93        23.84        20.48         6.25        14.83         7.76 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       29.42        16.87        11.54         7.10         5.69         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7863 TCGA-BB-7864 
        7.82         6.15         4.37        18.35        13.91        22.59 
TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 
       20.98        14.07        14.33        71.05        20.52         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 
       26.27        23.70        15.95         4.67        14.86        12.89 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       32.65        21.11        21.11        14.33        34.68        26.66 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       41.69        13.05        16.04        16.83         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       35.54        16.21        11.54        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 
       22.45         9.53        14.73        13.94        14.24        10.39 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6989 
       20.68         1.48        12.85         9.07        13.94        20.09 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
       12.95         3.91         3.68        14.20        13.08         1.51 
TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 
       14.70        15.91         5.75         2.70        48.20        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        54.58        46.75        29.46        45.99 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.24        28.60        32.38        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       32.38        13.25        14.99        26.79        48.03        45.30 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 
       33.11        43.04        29.62        28.83        31.82        11.61 
TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI 
       17.92        18.02        12.92        12.85         9.96        19.99 
TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 
       84.23        54.67        37.87        26.27        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.54        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       10.22        11.64         7.69        12.46        11.51        15.75 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 
       47.34        40.93        35.84         3.09        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 
       32.78        47.01        27.06        12.89        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CV-5430 
       29.85        29.52        30.58         7.10         5.13       139.43 
TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5442 TCGA-CV-5443 
       17.16        47.28        19.20        17.95        76.50        91.53 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5978 
       80.12        17.06        13.35        23.05        48.59         7.07 
TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 
       54.74        62.43        90.12         2.14         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 
        4.73        21.90        26.43       126.08        19.79        42.38 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.95        65.82        10.98         7.13         8.42 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
       28.34         2.50        64.83       126.15       111.16        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
       12.66         7.99         9.01        52.31        12.92        21.80 
TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       71.21       114.97        56.68         4.73        47.47        36.00 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7261 
       26.20        17.13        95.34         4.96        47.97        36.13 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       18.41        35.54       210.97        89.33         9.67         0.46 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.08        25.94        34.09       100.57        14.89        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.94         3.52        16.27        84.49        19.76 
TCGA-CV-7438 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 
        6.38        27.98       169.38         5.98        24.66        10.42 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.79        27.22        13.25        25.41         9.60 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-A4Z9 
       23.05         2.53        16.14         5.06        18.67         3.68 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 
        3.42        58.45        35.54        16.96        33.86        14.04 
TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7596 
       18.90        20.45         9.83        12.13        12.10        11.18 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J 
       18.54        16.11        21.63         0.49         3.02        19.23 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 
        0.10        12.62         0.46         0.43         0.20        13.38 
TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        1.91         0.07         0.16         0.82         1.22         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A6I0 
        1.45         0.79         0.82         0.36         1.61         1.08 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61H 
       34.75        15.95         4.01        14.50        19.33        13.55 
TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W 
        0.07        14.47        11.54        11.84         7.36         0.46 
TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 
        1.12        12.89         1.84         3.65         3.68         8.35 
TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX 
       29.92        54.31        23.70        10.85        36.82        47.01 
TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 
       19.00        63.02         2.04        29.00        12.99        16.01 
TCGA-P3-A6T8 TCGA-QK-A64Z 
       13.15        18.18 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              0.07               0.07 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            142.52             210.97 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             15.09              16.55 
[1] "0.1 - 142.5 (15.1)" "0.1 - 211.0 (16.5)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D32V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  18P GAIN MUTATED         3        8        14        49         2
  18P GAIN WILD-TYPE      21       54        52       140         6
D32V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  18P GAIN MUTATED    5 18 25 29
  18P GAIN WILD-TYPE 34 85 59 99
D32V4, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  T1                5                 34
  T2               18                 85
  T3               25                 59
  T4               29                 99
                    vv
clus                  N0  N1  N2  N3
  18P GAIN MUTATED    22  10  37   2
  18P GAIN WILD-TYPE 112  42  88   5
D32V5, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  N0               22                112
  N1               10                 42
  N2               37                 88
  N3                2                  5
D32V6, binary
                    cls
clus                  0  1
  18P GAIN MUTATED   16 10
  18P GAIN WILD-TYPE 87 33
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     16   10
  18P GAIN WILD-TYPE   87   33
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  M0               16                 87
  MX               10                 33
D32V7, binary
                    cls
clus                   0   1
  18P GAIN MUTATED    12  80
  18P GAIN WILD-TYPE 104 208
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     12   80
  18P GAIN WILD-TYPE  104  208
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE               12                104
  MALE                 80                208
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  18P GAIN MUTATED                                      92
  18P GAIN WILD-TYPE                                   305
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  18P GAIN MUTATED                                                             0
  18P GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  18P GAIN MUTATED                                                     0
  18P GAIN WILD-TYPE                                                   6
D32V8, multiclass
                                                             clus
vv                                                            18P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     92
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            18P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      305
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D32V9, binary
                    cls
clus                   0   1
  18P GAIN MUTATED    16  76
  18P GAIN WILD-TYPE  63 249
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     16   76
  18P GAIN WILD-TYPE   63  249
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                16                 63
  YES               76                249
D32V10, continuous
D32V11, continuous
D32V12, continuous

Clustering(33) Variable = 18Q GAIN MUTATION ANALYSIS
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN MUTATED    21  15
  18Q GAIN WILD-TYPE 226 137
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                36                363 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                15                137 
$`18Q GAIN MUTATED`
TCGA-BA-5151 TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4225 
       23.74        17.10        57.44         2.07        94.62         4.60 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7870 TCGA-CN-4736 TCGA-CN-6012 TCGA-CN-6020 
       18.35        10.19        37.91        12.99        20.68         3.22 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CR-6467 TCGA-CR-6482 TCGA-CR-7367 TCGA-CR-7370 
        7.36        10.45        58.42        11.34        47.34         3.45 
TCGA-CR-7372 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-6433 
       24.95        35.41        48.39       129.21       108.33        21.07 
TCGA-CV-6441 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7103 TCGA-CV-7406 
        9.60        15.09        30.08         4.14        52.31        57.47 
TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-A461 TCGA-DQ-7590 TCGA-HD-A634 TCGA-P3-A5Q6 
       22.85         0.07        67.86        25.48         0.33        15.78 

$`18Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 
       42.35        57.93        23.84        20.48        53.79         6.25 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF 
       21.17        14.83        12.62         3.72         7.76        29.42 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF 
       16.87        11.54         7.10         5.69         5.98         7.82 
TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        6.15         9.14         4.37        17.62        13.91        22.59 
TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z 
       20.98        14.07        14.33        71.05        20.52         0.16 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
        0.13        26.27        23.70        15.95         4.67        14.86 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       20.15        12.89        15.19        32.65        21.11        21.11 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       17.79        14.33        34.68        26.66        41.69        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
       16.04        16.83         5.69        12.39        35.54         8.32 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 
       22.45         9.53        14.73        13.94        14.24        10.39 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
       20.68         1.48        12.85         9.07         6.64        13.94 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
       20.09        12.95         3.91         3.68        14.20        13.08 
TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W 
        1.51        14.70         7.40        17.29        15.91        11.44 
TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        5.75        12.07         2.70        48.20        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        54.58        46.75        29.46        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.24        28.60        32.38        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.38        13.25         4.24        14.99        26.79        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 
       45.30        33.11        16.73        43.04        29.62        28.83 
TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE 
       31.82        11.61        20.15        17.92        18.02        12.92 
TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       12.85         9.96        19.99        84.23        11.77        54.67 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       37.87        26.27        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 
       18.54        16.90         6.02        11.90        10.22        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.69        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 
       39.16        40.93        35.84         3.09        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.06        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.58         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 
        5.95        29.95       139.43        17.16        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95       107.51        94.88        76.50        91.53        80.12 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        23.05        86.83        48.59        60.49 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 
        7.07        43.23        54.74        62.43        90.12         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.73        21.90        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6952 
       11.24       126.08        19.79        12.03        42.38         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.95        65.82        10.98         7.13         8.42        28.34 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        2.50        64.83       126.15       111.16        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         5.26         1.84        12.92        21.80 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.97        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       36.00        31.36        26.20        18.97        17.13        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.85       210.97        89.33         9.67         0.46 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.08        25.94        34.09       100.57        14.89        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.94         3.52        16.27        84.49        19.76 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O 
        7.17       142.52        16.64         6.38        22.19        27.98 
TCGA-CV-A45Q TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
      169.38         5.98        24.66        10.42        10.55         7.79 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        25.41         9.60        23.05         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
       16.14         5.06        18.67         3.48         4.21         3.68 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        3.42        58.45        35.54        16.96        33.86        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       14.04        18.90        20.45         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G 
       10.65        11.18        18.54        16.11        21.63         0.49 
TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 
        3.02        19.23         0.10        12.62         0.46         0.43 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.20        13.38         1.91         4.37         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.22         1.81         1.45         0.79         0.82 
TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        0.36         1.61         1.08        34.75        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J 
       14.50        19.33        11.84        13.55         0.07        14.47 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W 
        5.29        11.54        11.84         7.36         6.90         0.46 
TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 
        1.12        12.89         1.84         3.65         3.68         8.35 
TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX 
       29.92        54.31        23.70        10.85        36.82        47.01 
TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 
       19.00        63.02        18.97         2.04        29.00        12.99 
TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       16.01        13.15        18.18 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              0.07               0.07 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
            129.21             210.97 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
            20.875             16.010 
[1] "0.1 - 129.2 (20.9)" "0.1 - 211.0 (16.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D33V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  18Q GAIN MUTATED         2        2         6        17         0
  18Q GAIN WILD-TYPE      22       60        60       172         8
D33V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  18Q GAIN MUTATED     4   6   7  11
  18Q GAIN WILD-TYPE  35  97  77 117
D33V4, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  T1                4                 35
  T2                6                 97
  T3                7                 77
  T4               11                117
                    vv
clus                  N0  N1  N2  N3
  18Q GAIN MUTATED     9   4  12   0
  18Q GAIN WILD-TYPE 125  48 113   7
D33V5, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  N0                9                125
  N1                4                 48
  N2               12                113
  N3                0                  7
D33V6, binary
                    cls
clus                  0  1
  18Q GAIN MUTATED    5  2
  18Q GAIN WILD-TYPE 98 41
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      5    2
  18Q GAIN WILD-TYPE   98   41
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  M0                5                 98
  MX                2                 41
D33V7, binary
                    cls
clus                   0   1
  18Q GAIN MUTATED     2  34
  18Q GAIN WILD-TYPE 114 254
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      2   34
  18Q GAIN WILD-TYPE  114  254
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  FEMALE                2                114
  MALE                 34                254
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  18Q GAIN MUTATED                                      36
  18Q GAIN WILD-TYPE                                   361
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  18Q GAIN MUTATED                                                             0
  18Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  18Q GAIN MUTATED                                                     0
  18Q GAIN WILD-TYPE                                                   6
D33V8, multiclass
                                                             clus
vv                                                            18Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     36
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            18Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      361
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D33V9, binary
                    cls
clus                   0   1
  18Q GAIN MUTATED     7  29
  18Q GAIN WILD-TYPE  72 296
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      7   29
  18Q GAIN WILD-TYPE   72  296
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 7                 72
  YES               29                296
D33V10, continuous
D33V11, continuous
D33V12, continuous

Clustering(34) Variable = 19P GAIN MUTATION ANALYSIS
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN MUTATED    29   9
  19P GAIN WILD-TYPE 218 143
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                38                361 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 9                143 
$`19P GAIN MUTATED`
TCGA-BA-5559 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-7861 TCGA-BB-7871 TCGA-BB-8601 
       57.44        94.62         4.60        10.19        14.07        20.52 
TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-A63T TCGA-CN-A63V 
        9.07        13.94         7.36        20.09         7.40        15.91 
TCGA-CN-A641 TCGA-CQ-5323 TCGA-CR-6467 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-7370 
       12.07        48.20        58.42         7.69        12.46         3.45 
TCGA-CR-7389 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5977 
       12.89        48.39        17.16       107.51        76.50        60.49 
TCGA-CV-7101 TCGA-CV-7235 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7261 TCGA-CV-7415 
        5.26        56.68        26.20        18.97        36.13        22.85 
TCGA-CX-7219 TCGA-F7-8298 TCGA-F7-A50J TCGA-F7-A623 TCGA-IQ-A61K TCGA-MT-A67G 
       27.22        16.11        19.23         0.20         5.29         3.68 
TCGA-P3-A5Q6 TCGA-P3-A6T4 
       15.78         2.04 

$`19P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.35        57.93        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       53.79         6.25        21.17        14.83         2.07        12.62 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB 
        3.72         7.76        29.42        16.87        11.54         7.10 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 
        5.69         5.98         7.82         6.15         9.14         4.37 
TCGA-BB-4228 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       18.35        17.62        13.91        22.59        20.98        37.91 
TCGA-BB-7872 TCGA-BB-8596 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       14.33        71.05         0.16         0.13        26.27        23.70 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       15.95         4.67        14.86        20.15        12.89        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       32.65        21.11        21.11        12.99        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       34.68        26.66        41.69        13.05        16.04        16.83 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        35.54         8.32        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        22.45         9.53 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       14.73        13.94        20.68        14.24        10.39        20.68 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6988 TCGA-CN-6992 
        1.48        12.85         3.22         6.64        10.45        12.95 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
        3.91         3.68        14.20        13.08         1.51        14.70 
TCGA-CN-A63U TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A642 TCGA-CQ-5324 TCGA-CQ-5325 
       17.29        11.44         5.75         2.70        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        54.58        46.75        29.46        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.24        28.60        32.38        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.38        13.25         4.24        14.99        26.79        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 
       45.30        33.11        16.73        43.04        29.62        28.83 
TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE 
       31.82        11.61        20.15        17.92        18.02        12.92 
TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       12.85         9.96        19.99        84.23        11.77        54.67 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       37.87        26.27        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.54        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       11.64        11.51        15.75         9.27        47.18        39.16 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       47.34        40.93        35.84         3.09        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 
       17.13        32.78        47.01        27.06        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.58         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 
        5.95        35.41        29.95       139.43       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 
       47.28        19.20        17.95        94.88        91.53        80.12 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 
       17.06        13.35        23.05        86.83        48.59         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        54.74        21.07        62.43         9.60        90.12 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.73        21.90 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.38 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.09        30.08         6.08        53.95        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.42        28.34         2.50         4.14        64.83 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.15       111.16        18.81        12.66         7.99         9.01 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.92        21.80        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7248 
      114.97         4.73        47.47        36.00        31.36        17.13 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 
       95.34         4.96        11.87        47.97         2.10        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       57.47        35.54        17.85       210.97        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        0.46        25.08        25.94         0.07        34.09       100.57 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.89        56.48       156.49        54.94         3.52        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.76         7.17       142.52        16.64         6.38 
TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE 
       22.19        27.98       169.38        67.86         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.42        10.55         7.79        13.25        25.41         9.60 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
       23.05         2.53        16.14         5.06        18.67         3.48 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        4.21         3.68         3.42        58.45        35.54        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       33.86        18.02        14.04        18.90        25.48        20.45 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 
        9.83        12.13        12.10        10.65        11.18        18.54 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W 
       21.63         0.49         3.02         0.10        12.62         0.46 
TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.43        13.38         1.91         4.37         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.22         1.81         1.45         0.79         0.82 
TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 
        0.36         1.61         0.33         1.08        34.75        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I 
        4.01        14.50        19.33        11.84        13.55         0.07 
TCGA-IQ-A61J TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W 
       14.47        11.54        11.84         7.36         6.90         0.46 
TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 
        1.12        12.89         1.84         3.65         8.35        29.92 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 
       54.31        23.70        10.85        36.82        47.01        19.00 
TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 
       63.02        18.97        29.00        12.99        16.01        13.15 
TCGA-QK-A64Z 
       18.18 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              0.20               0.07 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            107.51             210.97 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             16.01              16.21 
[1] "0.2 - 107.5 (16.0)" "0.1 - 211.0 (16.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D34V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  19P GAIN MUTATED         3        3         5        21         0
  19P GAIN WILD-TYPE      21       59        61       168         8
D34V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19P GAIN MUTATED     6   5   9  12
  19P GAIN WILD-TYPE  33  98  75 116
D34V4, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  T1                6                 33
  T2                5                 98
  T3                9                 75
  T4               12                116
                    vv
clus                  N0  N1  N2  N3
  19P GAIN MUTATED    10   4  17   0
  19P GAIN WILD-TYPE 124  48 108   7
D34V5, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  N0               10                124
  N1                4                 48
  N2               17                108
  N3                0                  7
D34V6, binary
                    cls
clus                  0  1
  19P GAIN MUTATED    8  7
  19P GAIN WILD-TYPE 95 36
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      8    7
  19P GAIN WILD-TYPE   95   36
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  M0                8                 95
  MX                7                 36
D34V7, binary
                    cls
clus                   0   1
  19P GAIN MUTATED     8  30
  19P GAIN WILD-TYPE 108 258
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      8   30
  19P GAIN WILD-TYPE  108  258
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE                8                108
  MALE                 30                258
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  19P GAIN MUTATED                                      38
  19P GAIN WILD-TYPE                                   359
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  19P GAIN MUTATED                                                             0
  19P GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  19P GAIN MUTATED                                                     0
  19P GAIN WILD-TYPE                                                   6
D34V8, multiclass
                                                             clus
vv                                                            19P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     38
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            19P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      359
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D34V9, binary
                    cls
clus                   0   1
  19P GAIN MUTATED     7  31
  19P GAIN WILD-TYPE  72 294
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      7   31
  19P GAIN WILD-TYPE   72  294
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 7                 72
  YES               31                294
D34V10, continuous
D34V11, continuous
D34V12, continuous

Clustering(35) Variable = 19Q GAIN MUTATION ANALYSIS
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN MUTATED    39  17
  19Q GAIN WILD-TYPE 208 135
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                56                343 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                17                135 
$`19Q GAIN MUTATED`
TCGA-BA-5153 TCGA-BA-5559 TCGA-BA-7269 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-7861 
       57.93        57.44         7.76        94.62         4.60        10.19 
TCGA-CN-6012 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-A63T 
       20.68         3.22         9.07        13.94         7.36         7.40 
TCGA-CN-A63V TCGA-CN-A641 TCGA-CQ-5324 TCGA-CQ-5330 TCGA-CQ-6223 TCGA-CQ-6225 
       15.91        12.07        39.68        29.46        34.75        13.25 
TCGA-CR-6467 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7389 
       58.42         7.69        12.46        47.34         3.45        12.89 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5977 TCGA-CV-6937 
       48.39        17.16       107.51        76.50        60.49        20.52 
TCGA-CV-7101 TCGA-CV-7235 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7253 TCGA-CV-7406 
        5.26        56.68        31.36        18.97        11.87        57.47 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7415 TCGA-CV-7435 TCGA-CV-7437 TCGA-CX-7219 
       35.54        17.85        22.85       142.52        16.64        27.22 
TCGA-D6-6825 TCGA-DQ-7592 TCGA-F7-8298 TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A623 
       16.14         9.83        16.11         3.02        19.23         0.20 
TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-A61G TCGA-IQ-A61K TCGA-KU-A66T TCGA-MT-A67G 
       34.75         4.01        11.84         5.29         6.90         3.68 
TCGA-P3-A5Q5 TCGA-P3-A6T4 
       29.92         2.04 

$`19Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       23.74        42.35        17.10        23.84        20.48        53.79 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        6.25        21.17        14.83         2.07        12.62         3.72 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       29.42        16.87        11.54         7.10         5.69         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7862 
        7.82         6.15         9.14         4.37        18.35        17.62 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.91        22.59        20.98        37.91        14.07        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       71.05        20.52         0.16         0.13        26.27        23.70 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       15.95         4.67        14.86        20.15        12.89        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       32.65        21.11        21.11        12.99        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       34.68        26.66        41.69        13.05        16.04        16.83 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        35.54         8.32        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        22.45         9.53 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       14.73        13.94        14.24        10.39        20.68         1.48 
TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
       12.85         6.64        10.45        20.09        12.95         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U 
        3.68        14.20        13.08         1.51        14.70        17.29 
TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5325 TCGA-CQ-5326 
       11.44         5.75         2.70        48.20        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       54.58        46.75        45.99        10.42        11.21         4.24 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 
       28.60        32.38        32.88        32.38         4.24        14.99 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
       26.79        48.03        45.30        33.11        16.73        43.04 
TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB 
       29.62        28.83        31.82        11.61        20.15        17.92 
TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 
       18.02        12.92        12.85         9.96        19.99        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 
       11.77        54.67        37.87        26.27        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.54        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       10.22        11.34        11.64        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 
       47.18        39.16        40.93        35.84         3.09        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 
       26.17        17.13        32.78        47.01        27.06        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.58         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5432 
        5.13         5.95        35.41        29.95       139.43       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5443 
      108.33        47.28        19.20        17.95        94.88        91.53 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       80.12        17.06        13.35        23.05        86.83        48.59 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        54.74        21.07        62.43         9.60 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 
       90.12         2.14         9.70         5.46         4.73        21.90 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.38 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.09        30.08         6.08        53.95        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.42        28.34         2.50         4.14        64.83 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.15       111.16        18.81        12.66         7.99         9.01 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.92        21.80        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 
      114.97         4.73        47.47        36.00        26.20        17.13 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
       95.34         4.96        47.97         2.10        36.13        18.41 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 
      210.97        89.33         9.67         0.46        25.08        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.57        14.89        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.94         3.52        16.27        84.49        19.76         7.17 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD 
        6.38        22.19        27.98       169.38        67.86         5.98 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 
       24.66        10.42        10.55         7.79        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        9.60        23.05         2.53         5.06        18.67         3.48 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        4.21         3.68         3.42        58.45        35.54        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       33.86        18.02        14.04        18.90        25.48        20.45 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8489 
       12.13        12.10        10.65        11.18        18.54        21.63 
TCGA-F7-A50G TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 
        0.49         0.10        12.62         0.46         0.43        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        1.91         4.37         0.07         0.16         0.82         1.22 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 
        1.81         1.45         0.79         0.82         0.36         1.61 
TCGA-HD-A634 TCGA-HD-A6I0 TCGA-IQ-7630 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61H 
        0.33         1.08        15.95        14.50        19.33        13.55 
TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W 
        0.07        14.47        11.54        11.84         7.36         0.46 
TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q6 
        1.12        12.89         1.84         3.65         8.35        15.78 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 
       54.31        23.70        10.85        36.82        47.01        19.00 
TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 
       63.02        18.97        29.00        12.99        16.01        13.15 
TCGA-QK-A64Z 
       18.18 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              0.20               0.07 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            142.52             210.97 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             16.39              16.04 
[1] "0.2 - 142.5 (16.4)" "0.1 - 211.0 (16.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D35V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  19Q GAIN MUTATED         3        9         9        25         1
  19Q GAIN WILD-TYPE      21       53        57       164         7
D35V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19Q GAIN MUTATED     6  16  12  14
  19Q GAIN WILD-TYPE  33  87  72 114
D35V4, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  T1                6                 33
  T2               16                 87
  T3               12                 72
  T4               14                114
                    vv
clus                  N0  N1  N2  N3
  19Q GAIN MUTATED    17   7  19   1
  19Q GAIN WILD-TYPE 117  45 106   6
D35V5, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  N0               17                117
  N1                7                 45
  N2               19                106
  N3                1                  6
D35V6, binary
                    cls
clus                  0  1
  19Q GAIN MUTATED   10  8
  19Q GAIN WILD-TYPE 93 35
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     10    8
  19Q GAIN WILD-TYPE   93   35
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  M0               10                 93
  MX                8                 35
D35V7, binary
                    cls
clus                   0   1
  19Q GAIN MUTATED    12  44
  19Q GAIN WILD-TYPE 104 244
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     12   44
  19Q GAIN WILD-TYPE  104  244
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE               12                104
  MALE                 44                244
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  19Q GAIN MUTATED                                      55
  19Q GAIN WILD-TYPE                                   342
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  19Q GAIN MUTATED                                                             0
  19Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  19Q GAIN MUTATED                                                     1
  19Q GAIN WILD-TYPE                                                   5
D35V8, multiclass
                                                             clus
vv                                                            19Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     55
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            19Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      342
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          5
D35V9, binary
                    cls
clus                   0   1
  19Q GAIN MUTATED    12  44
  19Q GAIN WILD-TYPE  67 281
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     12   44
  19Q GAIN WILD-TYPE   67  281
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                12                 67
  YES               44                281
D35V10, continuous
D35V11, continuous
D35V12, continuous

Clustering(36) Variable = 20P GAIN MUTATION ANALYSIS
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN MUTATED    93  54
  20P GAIN WILD-TYPE 154  98
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               147                252 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                54                 98 
$`20P GAIN MUTATED`
TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5556 TCGA-BA-5559 TCGA-BA-6868 
        9.07         8.15        23.74        23.84        57.44         6.25 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A6DB TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-7861 
       12.62         7.76         7.10         9.14         4.60        10.19 
TCGA-BB-7862 TCGA-BB-7872 TCGA-C9-A47Z TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4731 
       17.62        14.33         0.16        20.15        15.19        32.65 
TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       21.11        12.99        17.79        14.33        34.68        26.66 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
       41.69        13.05        16.83        12.39        35.54         8.32 
TCGA-CN-5366 TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6020 TCGA-CN-6022 
       11.84         9.53        20.68        14.24         3.22         6.64 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-A63T TCGA-CN-A63U 
       13.94         7.36        10.45        20.09         7.40        17.29 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       46.75        29.46        32.38        34.75        32.38        13.25 
TCGA-CQ-6229 TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CQ-A4C6 TCGA-CQ-A4C7 
       26.79        45.30        16.73        29.62        31.82        11.61 
TCGA-CQ-A4C9 TCGA-CQ-A4CE TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-6467 
       20.15        12.92        19.99        84.23        11.77        58.42 
TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7372 
       11.64        12.46        39.16        47.34         3.45        24.95 
TCGA-CR-7373 TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7389 TCGA-CR-7392 TCGA-CR-7399 
       29.23         9.17        19.92        12.89        31.10         5.95 
TCGA-CR-7401 TCGA-CV-5430 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5442 
       35.41       139.43       108.33        47.28        19.20        76.50 
TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-5978 
       80.12        13.35        23.05        86.83        60.49         7.07 
TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6945 
       54.74        90.12        20.52        21.90        26.43        12.03 
TCGA-CV-6948 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6962 TCGA-CV-7090 
       42.38        65.82         7.13         8.42         4.14       126.15 
TCGA-CV-7095 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7242 TCGA-CV-7243 
       18.81        21.80        71.21        10.75        36.00        31.36 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7416 TCGA-CV-7421 
       26.20        17.13         2.10        18.41        25.08         0.07 
TCGA-CV-7423 TCGA-CV-7429 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-A6JE TCGA-CX-7082 
      100.57         3.52        16.64         6.38        24.66        10.42 
TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6825 TCGA-D6-8569 TCGA-D6-A4ZB 
        7.79        25.41         9.60        16.14         4.21         3.42 
TCGA-DQ-5624 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-A50J TCGA-F7-A61S 
       58.45        14.04        20.45         9.83        19.23         0.10 
TCGA-H7-8501 TCGA-HD-7753 TCGA-HD-8314 TCGA-HD-A634 TCGA-IQ-7630 TCGA-IQ-7632 
        1.91         0.16         1.45         0.33        15.95        14.50 
TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61I TCGA-IQ-A61K TCGA-IQ-A61L TCGA-KU-A66T 
       19.33        11.84         0.07         5.29        11.54         6.90 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67G TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A6T0 
       12.89         1.84         3.68        15.78        54.31        19.00 
TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 
       18.97         2.04        29.00 

$`20P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5152 TCGA-BA-5153 
       15.19         9.30        13.64        37.28        42.35        57.93 
TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       17.10        20.48        53.79        21.17        14.83         2.07 
TCGA-BA-6873 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BA-A6DE 
        3.72        29.42        16.87        11.54         5.69         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7863 
        7.82         6.15        94.62         4.37        18.35        13.91 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8596 TCGA-BB-8601 
       22.59        20.98        37.91        14.07        71.05        20.52 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
        0.13        26.27        23.70        15.95         4.67        14.86 
TCGA-CN-4729 TCGA-CN-4735 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5364 TCGA-CN-5365 
       12.89        21.11        16.04         5.69        16.21        11.54 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 
       11.57        12.49         8.52        22.45        14.73        13.94 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6992 
       10.39        20.68         1.48        12.85         9.07        12.95 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
        3.91         3.68        14.20        13.08         1.51        14.70 
TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 
       15.91        11.44         5.75        12.07         2.70        48.20 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5332 
       39.68        21.50         2.93        54.58        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6227 TCGA-CQ-6228 
       11.21         4.24        28.60        32.88         4.24        14.99 
TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7071 TCGA-CQ-A4CB TCGA-CQ-A4CD 
       48.03        33.11        43.04        28.83        17.92        18.02 
TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 
       12.85         9.96        54.67        37.87        26.27        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.54        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6492 
       11.90        10.22        11.34         7.69        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7374 
        9.27        47.18        40.93        35.84         3.09         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       31.96        34.06        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       27.06        29.82        30.02        29.85        29.52        30.58 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 
        7.10         5.13        29.95        48.39        17.16       129.21 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5976 
       17.95       107.51        94.88        91.53        17.06        48.59 
TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 
       43.23        21.07        62.43         9.60         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6950 
        5.46         4.73        11.24       126.08        19.79        15.09 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6960 TCGA-CV-6961 
       30.08         6.08        53.95        10.98        28.34         2.50 
TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
       64.83       111.16        12.66         7.99         9.01         5.26 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
        1.84        52.31        12.92       114.97        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7247 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       47.47        18.97        95.34         4.96        11.87        47.97 
TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       36.13        57.47        35.54        17.85       210.97        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 
        9.67         0.46        22.85        25.94        34.09        14.89 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
       56.48       156.49        54.94        16.27        84.49        19.76 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 
        7.17       142.52        22.19        27.98       169.38        67.86 
TCGA-CV-A6JD TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6823 TCGA-D6-6824 
        5.98        10.55        27.22        13.25        23.05         2.53 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5625 TCGA-DQ-5629 
        5.06        18.67         3.48         3.68        35.54        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7593 TCGA-DQ-7594 
       33.86        18.02        18.90        25.48        12.13        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G 
       10.65        11.18        18.54        16.11        21.63         0.49 
TCGA-F7-A50I TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 
        3.02        12.62         0.46         0.43         0.20        13.38 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8634 
        4.37         0.07         0.82         1.22         1.81         0.79 
TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7631 
        0.82         0.36         1.61         1.08        34.75         4.01 
TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X 
       13.55        14.47        11.84         7.36         0.46         1.12 
TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW 
        3.65         8.35        29.92        23.70        10.85        36.82 
TCGA-P3-A6SX TCGA-P3-A6T2 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       47.01        63.02        12.99        16.01        13.15        18.18 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.07               0.07 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            139.43             210.97 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            16.730             16.025 
[1] "0.1 - 139.4 (16.7)" "0.1 - 211.0 (16.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D36V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  20P GAIN MUTATED        11       21        27        70         4
  20P GAIN WILD-TYPE      13       41        39       119         4
D36V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  20P GAIN MUTATED   17 36 31 50
  20P GAIN WILD-TYPE 22 67 53 78
D36V4, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  T1               17                 22
  T2               36                 67
  T3               31                 53
  T4               50                 78
                    vv
clus                 N0 N1 N2 N3
  20P GAIN MUTATED   47 25 46  3
  20P GAIN WILD-TYPE 87 27 79  4
D36V5, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  N0               47                 87
  N1               25                 27
  N2               46                 79
  N3                3                  4
D36V6, binary
                    cls
clus                  0  1
  20P GAIN MUTATED   42 15
  20P GAIN WILD-TYPE 61 28
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     42   15
  20P GAIN WILD-TYPE   61   28
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  M0               42                 61
  MX               15                 28
D36V7, binary
                    cls
clus                   0   1
  20P GAIN MUTATED    44 104
  20P GAIN WILD-TYPE  72 184
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     44  104
  20P GAIN WILD-TYPE   72  184
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE               44                 72
  MALE                104                184
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  20P GAIN MUTATED                                     146
  20P GAIN WILD-TYPE                                   251
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  20P GAIN MUTATED                                                             0
  20P GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  20P GAIN MUTATED                                                     2
  20P GAIN WILD-TYPE                                                   4
D36V8, multiclass
                                                             clus
vv                                                            20P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    146
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        2
                                                             clus
vv                                                            20P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      251
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D36V9, binary
                    cls
clus                   0   1
  20P GAIN MUTATED    34 114
  20P GAIN WILD-TYPE  45 211
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     34  114
  20P GAIN WILD-TYPE   45  211
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                34                 45
  YES              114                211
D36V10, continuous
D36V11, continuous
D36V12, continuous

Clustering(37) Variable = 20Q GAIN MUTATION ANALYSIS
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN MUTATED    94  61
  20Q GAIN WILD-TYPE 153  91
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               155                244 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                61                 91 
$`20Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5556 TCGA-BA-6868 
        9.30         9.07         8.15        23.74        23.84         6.25 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6DB TCGA-BB-4225 TCGA-BB-7861 
       12.62         7.76        29.42         7.10         4.60        10.19 
TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7872 TCGA-C9-A47Z TCGA-CN-4725 TCGA-CN-4728 
       17.62        22.59        14.33         0.16        15.95        20.15 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       15.19        32.65        21.11        12.99        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5359 
       34.68        26.66        41.69        13.05        16.83        12.39 
TCGA-CN-5363 TCGA-CN-5366 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
        8.32        11.84         9.53        13.94        20.68        14.24 
TCGA-CN-6018 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6994 
        1.48         6.64        13.94         7.36        10.45         3.91 
TCGA-CN-6995 TCGA-CN-A63T TCGA-CN-A63U TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-6220 
        3.68         7.40        17.29        46.75        29.46        32.38 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6229 TCGA-CQ-7064 TCGA-CQ-7067 
       34.75        32.38        13.25        26.79        45.30        16.73 
TCGA-CQ-7069 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CE TCGA-CQ-A4CG 
       29.62        31.82        11.61        20.15        12.92        12.85 
TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6484 TCGA-CR-6488 
       11.77        58.42        18.54        16.90        11.64        12.46 
TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7377 
        9.27        39.16        47.34        24.95        29.23         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7389 TCGA-CR-7392 TCGA-CR-7401 TCGA-CV-5430 
       34.06        19.92        12.89        31.10        35.41       139.43 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5442 TCGA-CV-5444 
      129.21       108.33        47.28        19.20        76.50        80.12 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6936 TCGA-CV-6937 
       60.49         7.07        54.74        90.12         5.46        20.52 
TCGA-CV-6940 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6954 TCGA-CV-6956 
       26.43        12.03        42.38        30.08        65.82         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 
        8.42        28.34         4.14       126.15        18.81        12.66 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       21.80        71.21        10.75        36.00        31.36        26.20 
TCGA-CV-7248 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7409 TCGA-CV-7416 TCGA-CV-7421 
       17.13         2.10        18.41        17.85        25.08         0.07 
TCGA-CV-7423 TCGA-CV-7429 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-A6JE TCGA-CX-7086 
      100.57         3.52        16.64         6.38        24.66         7.79 
TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6825 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5631 
       25.41        23.05        16.14         4.21        58.45        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7592 TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A623 
       14.04        18.90         9.83        19.23         0.10         0.20 
TCGA-H7-8501 TCGA-HD-7753 TCGA-HD-8314 TCGA-HD-A634 TCGA-IQ-7630 TCGA-IQ-7632 
        1.91         0.16         1.45         0.33        15.95        14.50 
TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61I TCGA-IQ-A61K TCGA-IQ-A61L TCGA-KU-A66T 
       19.33        11.84         0.07         5.29        11.54         6.90 
TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67G TCGA-P3-A5Q6 
        0.46         1.12        12.89         1.84         3.68        15.78 
TCGA-P3-A5QA TCGA-P3-A6T0 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 
       54.31        19.00        18.97         2.04        29.00 

$`20Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 
       15.19        13.64        37.28        42.35        57.93        17.10 
TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       20.48        53.79        57.44        21.17        14.83         2.07 
TCGA-BA-6873 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF 
        3.72        16.87        11.54         5.69         5.98         7.82 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7863 
        6.15        94.62         9.14         4.37        18.35        13.91 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 
       20.98        37.91        14.07        71.05        20.52         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4735 
       26.27        23.70         4.67        14.86        12.89        21.11 
TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 
       16.04         5.69        35.54        16.21        11.54        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6016 TCGA-CN-6017 
       12.49         8.52        22.45        14.73        10.39        20.68 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6996 
       12.85         3.22         9.07        20.09        12.95        14.20 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y 
       13.08         1.51        14.70        15.91        11.44         5.75 
TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
       12.07         2.70        48.20        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       54.58        45.99        10.42        11.21         4.24        28.60 
TCGA-CQ-6221 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7068 
       32.88         4.24        14.99        48.03        33.11        43.04 
TCGA-CQ-7071 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 
       28.83        17.92        18.02         9.96        19.99        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.67        37.87        26.27        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 
       36.99         6.02        11.90        10.22        11.34         7.69 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       11.51        15.75        47.18        40.93        35.84         3.45 
TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
        3.09         0.99        31.96        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7393 TCGA-CR-7394 
       47.01        27.06        29.82        30.02        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 
       30.58         7.10         5.13         5.95        29.95        48.39 
TCGA-CV-5431 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 
       17.16        17.95       107.51        94.88        91.53        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6433 
       13.35        23.05        86.83        48.59        43.23        21.07 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6938 TCGA-CV-6939 
       62.43         9.60         2.14         9.70         4.73        21.90 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 
       11.24       126.08        19.79        15.09         6.08        53.95 
TCGA-CV-6955 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7099 TCGA-CV-7100 
       10.98         2.50        64.83       111.16         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7183 TCGA-CV-7235 
        5.26         1.84        52.31        12.92       114.97        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7247 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
        4.73        47.47        18.97        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 
       47.97        36.13        57.47        35.54       210.97        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 
        9.67         0.46        22.85        25.94        34.09        14.89 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
       56.48       156.49        54.94        16.27        84.49        19.76 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 
        7.17       142.52        22.19        27.98       169.38        67.86 
TCGA-CV-A6JD TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
        5.98        10.42        10.55        27.22        13.25         9.60 
TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
        2.53         5.06        18.67         3.48         3.68         3.42 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 
       35.54        16.96        33.86        25.48        20.45        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.10        10.65        11.18        18.54        16.11        21.63 
TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 
        0.49         3.02        12.62         0.46         0.43        13.38 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8634 
        4.37         0.07         0.82         1.22         1.81         0.79 
TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7631 
        0.82         0.36         1.61         1.08        34.75         4.01 
TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A67F TCGA-MZ-A6I9 
       13.55        14.47        11.84         7.36         3.65         8.35 
TCGA-P3-A5Q5 TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T2 
       29.92        23.70        10.85        36.82        47.01        63.02 
TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       12.99        16.01        13.15        18.18 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              0.07               0.07 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            139.43             210.97 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            16.640             16.075 
[1] "0.1 - 139.4 (16.6)" "0.1 - 211.0 (16.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
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  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
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        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
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        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
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        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
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        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
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        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D37V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  20Q GAIN MUTATED        12       24        26        74         5
  20Q GAIN WILD-TYPE      12       38        40       115         3
D37V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  20Q GAIN MUTATED   20 37 31 54
  20Q GAIN WILD-TYPE 19 66 53 74
D37V4, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  T1               20                 19
  T2               37                 66
  T3               31                 53
  T4               54                 74
                    vv
clus                 N0 N1 N2 N3
  20Q GAIN MUTATED   54 22 48  4
  20Q GAIN WILD-TYPE 80 30 77  3
D37V5, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  N0               54                 80
  N1               22                 30
  N2               48                 77
  N3                4                  3
D37V6, binary
                    cls
clus                  0  1
  20Q GAIN MUTATED   45 16
  20Q GAIN WILD-TYPE 58 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     45   16
  20Q GAIN WILD-TYPE   58   27
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  M0               45                 58
  MX               16                 27
D37V7, binary
                    cls
clus                   0   1
  20Q GAIN MUTATED    46 110
  20Q GAIN WILD-TYPE  70 178
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     46  110
  20Q GAIN WILD-TYPE   70  178
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE               46                 70
  MALE                110                178
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  20Q GAIN MUTATED                                     155
  20Q GAIN WILD-TYPE                                   242
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  20Q GAIN MUTATED                                                             0
  20Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  20Q GAIN MUTATED                                                     1
  20Q GAIN WILD-TYPE                                                   5
D37V8, multiclass
                                                             clus
vv                                                            20Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    155
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            20Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      242
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          5
D37V9, binary
                    cls
clus                   0   1
  20Q GAIN MUTATED    35 121
  20Q GAIN WILD-TYPE  44 204
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     35  121
  20Q GAIN WILD-TYPE   44  204
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                35                 44
  YES              121                204
D37V10, continuous
D37V11, continuous
D37V12, continuous

Clustering(38) Variable = 21Q GAIN MUTATION ANALYSIS
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN MUTATED    16  11
  21Q GAIN WILD-TYPE 231 141
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                27                372 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                11                141 
$`21Q GAIN MUTATED`
TCGA-BA-6873 TCGA-BB-4225 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4740 TCGA-CN-5356 
        3.72         4.60        14.86        12.89        26.66        16.83 
TCGA-CN-6024 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-A63U TCGA-CR-6467 TCGA-CR-6478 
        7.36        12.95         3.68        17.29        58.42         6.02 
TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5441 TCGA-CV-6940 TCGA-CV-6945 
       29.95       139.43       129.21        94.88        26.43        12.03 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7433 TCGA-CV-A461 TCGA-DQ-7591 TCGA-HD-8224 
        0.46        22.85        19.76        67.86        20.45         1.81 
TCGA-HD-8314 TCGA-IQ-A61O TCGA-P3-A6SW 
        1.45        11.84        36.82 

$`21Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.35        57.93        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.79        57.44         6.25        21.17        14.83         2.07 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB 
       12.62         7.76        29.42        16.87        11.54         7.10 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
        5.69         5.98         7.82         6.15        94.62         9.14 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.35        10.19        17.62        13.91        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.91        14.07        14.33        71.05        20.52 
TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        0.16         0.13        26.27        23.70        15.95         4.67 
TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
       20.15        15.19        32.65        21.11        21.11        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       17.79        14.33        34.68        41.69        13.05        16.04 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        35.54         8.32        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        22.45         9.53 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       14.73        13.94        20.68        14.24        10.39        20.68 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48        12.85         3.22         9.07         6.64        13.94 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
       10.45        20.09         3.91        14.20        13.08         1.51 
TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 
       14.70         7.40        15.91        11.44         5.75        12.07 
TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        2.70        48.20        39.68        21.50         2.93        54.58 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       46.75        29.46        45.99        10.42        11.21         4.24 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.38        32.88        34.75        32.38        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.24        14.99        26.79        48.03        45.30        33.11 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 
       16.73        43.04        29.62        28.83        31.82        11.61 
TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH 
       20.15        17.92        18.02        12.92        12.85         9.96 
TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       19.99        84.23        11.77        54.67        37.87        26.27 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.54        16.90 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.69        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.16        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.93        35.84         3.45         3.09        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.06        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.58         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5434 
        5.13         5.95        35.41        48.39        17.16       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20        17.95       107.51        76.50        91.53 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       80.12        17.06        13.35        23.05        86.83        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       60.49         7.07        43.23        54.74        21.07        62.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        9.60        90.12         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 
        4.73        21.90        11.24       126.08        19.79        42.38 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.09        30.08         6.08        53.95        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.42        28.34         2.50         4.14        64.83 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.15       111.16        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.26         1.84        52.31        12.92        21.80        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.97        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.36        26.20        18.97        17.13        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        57.47 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7416 
       35.54        17.85       210.97        89.33         9.67        25.08 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.57        14.89        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 
      156.49        54.94         3.52        16.27        84.49         7.17 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q 
      142.52        16.64         6.38        22.19        27.98       169.38 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        5.98        24.66        10.42        10.55         7.79        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        25.41         9.60        23.05         2.53        16.14 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
        5.06        18.67         3.48         4.21         3.68         3.42 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       58.45        35.54        16.96        33.86        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       18.90        25.48         9.83        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I 
       11.18        18.54        16.11        21.63         0.49         3.02 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 
       19.23         0.10        12.62         0.46         0.43         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
       13.38         1.91         4.37         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 
        1.22         0.79         0.82         0.36         1.61         0.33 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
        1.08        34.75        15.95         4.01        14.50        19.33 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L 
       11.84        13.55         0.07        14.47         5.29        11.54 
TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D 
        7.36         6.90         0.46         1.12        12.89         1.84 
TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA 
        3.65         3.68         8.35        29.92        15.78        54.31 
TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 
       23.70        10.85        47.01        19.00        63.02        18.97 
TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
        2.04        29.00        12.99        16.01        13.15        18.18 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              0.46               0.07 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            139.43             210.97 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            16.830             16.125 
[1] "0.5 - 139.4 (16.8)" "0.1 - 211.0 (16.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D38V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  21Q GAIN MUTATED         0        0         6        15         1
  21Q GAIN WILD-TYPE      24       62        60       174         7
D38V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  21Q GAIN MUTATED     1   4   6  11
  21Q GAIN WILD-TYPE  38  99  78 117
D38V4, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  T1                1                 38
  T2                4                 99
  T3                6                 78
  T4               11                117
                    vv
clus                  N0  N1  N2  N3
  21Q GAIN MUTATED     5   4  12   1
  21Q GAIN WILD-TYPE 129  48 113   6
D38V5, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  N0                5                129
  N1                4                 48
  N2               12                113
  N3                1                  6
D38V6, binary
                    cls
clus                  0  1
  21Q GAIN MUTATED    4  3
  21Q GAIN WILD-TYPE 99 40
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      4    3
  21Q GAIN WILD-TYPE   99   40
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  M0                4                 99
  MX                3                 40
D38V7, binary
                    cls
clus                   0   1
  21Q GAIN MUTATED     3  24
  21Q GAIN WILD-TYPE 113 264
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      3   24
  21Q GAIN WILD-TYPE  113  264
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE                3                113
  MALE                 24                264
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  21Q GAIN MUTATED                                      24
  21Q GAIN WILD-TYPE                                   373
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  21Q GAIN MUTATED                                                             1
  21Q GAIN WILD-TYPE                                                           0
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  21Q GAIN MUTATED                                                     2
  21Q GAIN WILD-TYPE                                                   4
D38V8, multiclass
                                                             clus
vv                                                            21Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     24
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        2
                                                             clus
vv                                                            21Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      373
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D38V9, binary
                    cls
clus                   0   1
  21Q GAIN MUTATED     7  20
  21Q GAIN WILD-TYPE  72 305
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      7   20
  21Q GAIN WILD-TYPE   72  305
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 7                 72
  YES               20                305
D38V10, continuous
D38V11, continuous
D38V12, continuous

Clustering(39) Variable = 22Q GAIN MUTATION ANALYSIS
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN MUTATED    46  41
  22Q GAIN WILD-TYPE 201 111
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                87                312 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                41                111 
$`22Q GAIN MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-7269 TCGA-BA-A6DA 
       15.19         9.07        17.10        20.48         7.76        11.54 
TCGA-BB-7870 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 TCGA-CN-4728 TCGA-CN-4737 
       37.91        71.05        20.52         0.13        20.15        17.79 
TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5367 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6016 
       13.05        16.83        11.57        14.73        20.68        10.39 
TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6994 TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-6220 
        7.36        20.09         3.91         2.93        10.42        32.38 
TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6229 TCGA-CQ-7067 TCGA-CQ-7069 
       32.88        32.38        13.25        26.79        16.73        29.62 
TCGA-CR-6471 TCGA-CR-6474 TCGA-CR-6482 TCGA-CR-7365 TCGA-CR-7370 TCGA-CR-7371 
       39.52        18.54        11.34        39.16         3.45         3.09 
TCGA-CR-7383 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7397 TCGA-CR-7401 TCGA-CV-5430 
       17.13        12.89        29.82         7.10        35.41       139.43 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5970 TCGA-CV-5978 TCGA-CV-6933 TCGA-CV-6940 
      129.21       108.33        13.35         7.07        90.12        26.43 
TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-7090 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7178 
       11.24        15.09       126.15         5.26         1.84        71.21 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7407 
       26.20        17.13        95.34        47.97        36.13        35.54 
TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7429 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 
       34.09        14.89         3.52        19.76         7.17        16.64 
TCGA-CV-7440 TCGA-CV-A6JE TCGA-CX-7219 TCGA-D6-A4ZB TCGA-DQ-5625 TCGA-DQ-5629 
       22.19        24.66        27.22         3.42        35.54        16.96 
TCGA-DQ-7589 TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8634 TCGA-IQ-A61H TCGA-IQ-A61L 
       18.90         0.16         1.22         0.79        13.55        11.54 
TCGA-IQ-A61O TCGA-KU-A66T TCGA-MT-A51X TCGA-P3-A5Q6 TCGA-P3-A5QF TCGA-P3-A6SX 
       11.84         6.90         1.12        15.78        10.85        47.01 
TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 
       18.97         2.04        29.00 

$`22Q GAIN WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         8.15        23.74        42.35 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 
       57.93        23.84        53.79        57.44         6.25        21.17 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-A4IF TCGA-BA-A6D8 
       14.83         2.07        12.62         3.72        29.42        16.87 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 
        7.10         5.69         5.98         7.82         6.15        94.62 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        9.14         4.60         4.37        18.35        10.19        17.62 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-C9-A47Z 
       13.91        22.59        20.98        14.07        14.33         0.16 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 
       26.27        23.70        15.95         4.67        14.86        12.89 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 
       15.19        32.65        21.11        21.11        12.99        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 
       34.68        26.66        41.69        16.04         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 
       35.54         8.32        16.21        11.54        11.84        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6017 
        8.52        22.45         9.53        13.94        14.24        20.68 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48        12.85         3.22         9.07         6.64        13.94 
TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
       10.45        12.95         3.68        14.20        13.08         1.51 
TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y 
       14.70         7.40        17.29        15.91        11.44         5.75 
TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 
       12.07         2.70        48.20        39.68        21.50        54.58 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       46.75        29.46        45.99        11.21         4.24        28.60 
TCGA-CQ-6223 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
       34.75         4.24        14.99        48.03        45.30        33.11 
TCGA-CQ-7068 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB 
       43.04        28.83        31.82        11.61        20.15        17.92 
TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 
       18.02        12.92        12.85         9.96        19.99        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.67        37.87        26.27        58.42        50.01 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       34.52        36.99        16.90         6.02        11.90        10.22 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.69        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7372 TCGA-CR-7373 
       47.18        47.34        40.93        35.84        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       32.78        47.01        27.06        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 
       29.52        30.58         5.13         5.95        29.95        48.39 
TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
       17.16        47.28        19.20        17.95       107.51        94.88 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 
       76.50        91.53        80.12        17.06        23.05        86.83 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       48.59        60.49        43.23        54.74        21.07        62.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
        9.60         2.14         9.70         5.46        20.52         4.73 
TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 
       21.90       126.08        19.79        12.03        42.38        30.08 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.95        65.82        10.98         7.13         8.42 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 
       28.34         2.50         4.14        64.83       111.16        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
       12.66         7.99         9.01        52.31        12.92        21.80 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.97        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 
       31.36        18.97         4.96        11.87         2.10        18.41 
TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       57.47        17.85       210.97        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7425 
       22.85        25.08        25.94         0.07       100.57        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7435 TCGA-CV-7438 
      156.49        54.94        16.27        84.49       142.52         6.38 
TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CX-7082 TCGA-CX-7085 
       27.98       169.38        67.86         5.98        10.42        10.55 
TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
        7.79        13.25        25.41         9.60        23.05         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
       16.14         5.06        18.67         3.48         4.21         3.68 
TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 
       58.45        33.86        18.02        14.04        25.48        20.45 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 
        9.83        12.13        12.10        10.65        11.18        18.54 
TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S 
       16.11        21.63         0.49         3.02        19.23         0.10 
TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 
       12.62         0.46         0.43         0.20        13.38         1.91 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8635 
        4.37         0.07         0.82         1.81         1.45         0.82 
TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 
        0.36         1.61         0.33         1.08        34.75        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61I TCGA-IQ-A61J 
        4.01        14.50        19.33        11.84         0.07        14.47 
TCGA-IQ-A61K TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
        5.29         7.36         0.46        12.89         1.84         3.65 
TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A6SW 
        3.68         8.35        29.92        54.31        23.70        36.82 
TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       19.00        63.02        12.99        16.01        13.15        18.18 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              0.13               0.07 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            139.43             210.97 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             16.96              15.98 
[1] "0.1 - 139.4 (17.0)" "0.1 - 211.0 (16.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D39V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  22Q GAIN MUTATED         5       11        15        47         1
  22Q GAIN WILD-TYPE      19       51        51       142         7
D39V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  22Q GAIN MUTATED    7 21 20 32
  22Q GAIN WILD-TYPE 32 82 64 96
D39V4, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  T1                7                 32
  T2               21                 82
  T3               20                 64
  T4               32                 96
                    vv
clus                  N0  N1  N2  N3
  22Q GAIN MUTATED    27  12  32   1
  22Q GAIN WILD-TYPE 107  40  93   6
D39V5, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  N0               27                107
  N1               12                 40
  N2               32                 93
  N3                1                  6
D39V6, binary
                    cls
clus                  0  1
  22Q GAIN MUTATED   18 12
  22Q GAIN WILD-TYPE 85 31
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED     18   12
  22Q GAIN WILD-TYPE   85   31
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  M0               18                 85
  MX               12                 31
D39V7, binary
                    cls
clus                   0   1
  22Q GAIN MUTATED    23  65
  22Q GAIN WILD-TYPE  93 223
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED     23   65
  22Q GAIN WILD-TYPE   93  223
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE               23                 93
  MALE                 65                223
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  22Q GAIN MUTATED                                      87
  22Q GAIN WILD-TYPE                                   310
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  22Q GAIN MUTATED                                                             1
  22Q GAIN WILD-TYPE                                                           0
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  22Q GAIN MUTATED                                                     0
  22Q GAIN WILD-TYPE                                                   6
D39V8, multiclass
                                                             clus
vv                                                            22Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     87
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            22Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      310
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D39V9, binary
                    cls
clus                   0   1
  22Q GAIN MUTATED    20  68
  22Q GAIN WILD-TYPE  59 257
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED     20   68
  22Q GAIN WILD-TYPE   59  257
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                20                 59
  YES               68                257
D39V10, continuous
D39V11, continuous
D39V12, continuous

Clustering(40) Variable = XQ GAIN MUTATION ANALYSIS
D40V1, survival
                   sevent
clus2                 0   1
  XQ GAIN MUTATED    36  33
  XQ GAIN WILD-TYPE 211 119
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               69               330 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               33               119 
$`XQ GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4223 
        9.30        37.28         8.15        12.62         7.76        94.62 
TCGA-BB-4225 TCGA-BB-4227 TCGA-CN-4728 TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-4742 
        4.60         4.37        20.15        17.79        26.66        13.05 
TCGA-CN-5359 TCGA-CN-5367 TCGA-CN-6012 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 
       12.39        11.57        20.68        13.94        10.45        20.09 
TCGA-CN-A49B TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-6220 TCGA-CQ-6229 TCGA-CQ-A4C7 
       14.70        54.58        46.75        32.38        26.79        11.61 
TCGA-CQ-A4CG TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-6477 TCGA-CR-6493 TCGA-CR-7370 
       12.85        11.77        58.42        16.90         9.27         3.45 
TCGA-CR-7380 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5970 
       19.92       108.33        47.28        76.50        80.12        13.35 
TCGA-CV-5977 TCGA-CV-6936 TCGA-CV-6951 TCGA-CV-6959 TCGA-CV-7102 TCGA-CV-7178 
       60.49         5.46        30.08         8.42         1.84        71.21 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7407 TCGA-CV-7409 
       31.36        26.20        95.34        47.97        35.54        17.85 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7437 TCGA-CV-A45Q TCGA-CX-7086 TCGA-D6-6516 
       22.85        25.08        16.64       169.38         7.79        25.41 
TCGA-D6-6823 TCGA-D6-8568 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5631 TCGA-DQ-7592 
       23.05         3.48        35.54        16.96        18.02         9.83 
TCGA-HD-7917 TCGA-HD-A6I0 TCGA-IQ-A61G TCGA-IQ-A61J TCGA-KU-A66T TCGA-MT-A51X 
        1.22         1.08        11.84        14.47         6.90         1.12 
TCGA-P3-A5Q6 TCGA-P3-A6T5 TCGA-P3-A6T6 
       15.78        29.00        12.99 

$`XQ GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
       15.19        13.64         9.07        23.74        42.35        57.93 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
       17.10        23.84        20.48        53.79        57.44         6.25 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 TCGA-BA-A4IF TCGA-BA-A6D8 
       21.17        14.83         2.07         3.72        29.42        16.87 
TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 
       11.54         7.10         5.69         5.98         7.82         6.15 
TCGA-BB-4224 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        9.14        18.35        10.19        17.62        13.91        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.91        14.07        14.33        71.05        20.52 
TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        0.16         0.13        26.27        23.70        15.95         4.67 
TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       14.86        12.89        15.19        32.65        21.11        21.11 
TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5356 
       12.99        14.33        34.68        41.69        16.04        16.83 
TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        5.69        35.54         8.32        16.21        11.54        11.84 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        22.45         9.53        14.73        13.94 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
       14.24        10.39        20.68         1.48        12.85         3.22 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        9.07         6.64         7.36        12.95         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V 
       14.20        13.08         1.51         7.40        17.29        15.91 
TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 
       11.44         5.75        12.07         2.70        48.20        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       21.50         2.93        29.46        45.99        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
        4.24        28.60        32.88        34.75        32.38        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
        4.24        14.99        48.03        45.30        33.11        16.73 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C9 TCGA-CQ-A4CB 
       43.04        29.62        28.83        31.82        20.15        17.92 
TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5248 
       18.02        12.92         9.96        19.99        84.23        54.67 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       37.87        26.27        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       18.54         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7365 
        7.69        12.46        11.51        15.75        47.18        39.16 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       47.34        40.93        35.84         3.09        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96         9.17        34.06        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.06        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.58         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.95        35.41        29.95        48.39       139.43        17.16 
TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 
      129.21        19.20        17.95       107.51        94.88        91.53 
TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 
       17.06        23.05        86.83        48.59         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       54.74        21.07        62.43         9.60        90.12         2.14 
TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        9.70        20.52         4.73        21.90        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6952 
      126.08        19.79        12.03        42.38        15.09         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6961 
       53.95        65.82        10.98         7.13        28.34         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.83       126.15       111.16        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         5.26        52.31        12.92        21.80 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.97        56.68         4.73        47.47        36.00 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7261 
       18.97        17.13         4.96        11.87         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       18.41        57.47       210.97        89.33         9.67         0.46 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.57        14.89        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.94         3.52        16.27        84.49        19.76 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A461 
        7.17       142.52         6.38        22.19        27.98        67.86 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 
        5.98        24.66        10.42        10.55        27.22        13.25 
TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8569 
        9.60         2.53        16.14         5.06        18.67         4.21 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 
        3.68         3.42        58.45        33.86        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       25.48        20.45        12.13        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J 
       18.54        16.11        21.63         0.49         3.02        19.23 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 
        0.10        12.62         0.46         0.43         0.20        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 
        1.91         4.37         0.07         0.16         0.82         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 
        1.45         0.79         0.82         0.36         1.61         0.33 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61H 
       34.75        15.95         4.01        14.50        19.33        13.55 
TCGA-IQ-A61I TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W 
        0.07         5.29        11.54        11.84         7.36         0.46 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 
       12.89         1.84         3.65         3.68         8.35        29.92 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 
       54.31        23.70        10.85        36.82        47.01        19.00 
TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       63.02        18.97         2.04        16.01        13.15        18.18 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             1.08              0.07 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
           169.38            210.97 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
           16.960            16.025 
[1] "1.1 - 169.4 (17.0)" "0.1 - 211.0 (16.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D40V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  XQ GAIN MUTATED         1        8        10        39         2
  XQ GAIN WILD-TYPE      23       54        56       150         6
D40V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  XQ GAIN MUTATED     2  14  16  28
  XQ GAIN WILD-TYPE  37  89  68 100
D40V4, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  T1               2                37
  T2              14                89
  T3              16                68
  T4              28               100
                   vv
clus                 N0  N1  N2  N3
  XQ GAIN MUTATED    18   8  28   1
  XQ GAIN WILD-TYPE 116  44  97   6
D40V5, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  N0              18               116
  N1               8                44
  N2              28                97
  N3               1                 6
D40V6, binary
                   cls
clus                 0  1
  XQ GAIN MUTATED   13  7
  XQ GAIN WILD-TYPE 90 36
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED     13    7
  XQ GAIN WILD-TYPE   90   36
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  M0              13                90
  MX               7                36
D40V7, binary
                   cls
clus                  0   1
  XQ GAIN MUTATED    18  52
  XQ GAIN WILD-TYPE  98 236
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED     18   52
  XQ GAIN WILD-TYPE   98  236
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  FEMALE              18                98
  MALE                52               236
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  XQ GAIN MUTATED                                      70
  XQ GAIN WILD-TYPE                                   327
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  XQ GAIN MUTATED                                                             0
  XQ GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  XQ GAIN MUTATED                                                     0
  XQ GAIN WILD-TYPE                                                   6
D40V8, multiclass
                                                             clus
vv                                                            XQ GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    70
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            XQ GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     327
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         6
D40V9, binary
                   cls
clus                  0   1
  XQ GAIN MUTATED    22  48
  XQ GAIN WILD-TYPE  57 277
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED     22   48
  XQ GAIN WILD-TYPE   57  277
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO               22                57
  YES              48               277
D40V10, continuous
D40V11, continuous
D40V12, continuous

Clustering(41) Variable = 1P LOSS MUTATION ANALYSIS
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS MUTATED    26  18
  1P LOSS WILD-TYPE 221 134
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               44               355 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               18               134 
$`1P LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-5152 TCGA-BA-6871 TCGA-BA-7269 TCGA-BA-A6D8 TCGA-CN-4736 
        9.30        42.35         2.07         7.76        16.87        12.99 
TCGA-CN-5355 TCGA-CN-5360 TCGA-CN-6012 TCGA-CN-6018 TCGA-CN-6021 TCGA-CN-6024 
       16.04        35.54        20.68         1.48         9.07         7.36 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-A63T TCGA-CQ-5332 
       12.95         3.91         3.68        13.08         7.40        10.42 
TCGA-CQ-6225 TCGA-CQ-A4CI TCGA-CR-7365 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       13.25        19.99        39.16         3.45         3.09        24.95 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-6003 TCGA-CV-6935 
      129.21       108.33        17.95       107.51        54.74         9.70 
TCGA-CV-6940 TCGA-CV-6950 TCGA-CV-6962 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7424 
       26.43        15.09         4.14        47.97        36.13        14.89 
TCGA-D6-6516 TCGA-DQ-7589 TCGA-F7-8489 TCGA-F7-A61W TCGA-HD-8634 TCGA-IQ-A61L 
       25.41        18.90        21.63         0.46         0.79        11.54 
TCGA-MZ-A6I9 TCGA-P3-A6T5 
        8.35        29.00 

$`1P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.19        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.93        17.10        23.84        20.48        53.79        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-A4IF 
        6.25        21.17        14.83        12.62         3.72        29.42 
TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 
       11.54         7.10         5.69         5.98         7.82         6.15 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
       94.62         9.14         4.60         4.37        18.35        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.62        13.91        22.59        20.98        37.91        14.07 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       14.33        71.05        20.52         0.16         0.13        26.27 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       23.70        15.95         4.67        14.86        20.15        12.89 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-4738 
       15.19        32.65        21.11        21.11        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 
       34.68        26.66        41.69        13.05        16.83         5.69 
TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       12.39         8.32        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        22.45         9.53        14.73        13.94 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 
       14.24        10.39        20.68        12.85         3.22         6.64 
TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A49B 
       13.94        10.45        20.09        14.20         1.51        14.70 
TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 
       17.29        15.91        11.44         5.75        12.07         2.70 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.20        39.68        21.50         2.93        54.58        46.75 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       29.46        45.99        11.21         4.24        28.60        32.38 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.88        34.75        32.38         4.24        14.99        26.79 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.30        33.11        16.73        43.04        29.62 
TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD 
       28.83        31.82        11.61        20.15        17.92        18.02 
TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       12.92        12.85         9.96        84.23        11.77        54.67 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.27        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.54        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.69        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7373 
        9.27        47.18        47.34        40.93        35.84        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.06        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.58         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.95        35.41        29.95        48.39       139.43 
TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       17.16        47.28        19.20        94.88        76.50        91.53 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       80.12        17.06        13.35        23.05        86.83        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       60.49         7.07        43.23        21.07        62.43         9.60 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
       90.12         2.14         5.46        20.52         4.73        21.90 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 
       11.24       126.08        19.79        12.03        42.38        30.08 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.95        65.82        10.98         7.13         8.42 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
       28.34         2.50        64.83       126.15       111.16        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.26         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.92        21.80        71.21        10.75       114.97        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.36        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 
       17.13        95.34         4.96        11.87         2.10        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       57.47        35.54        17.85       210.97        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.08        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
      100.57        56.48       156.49        54.94         3.52        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.76         7.17       142.52        16.64         6.38 
TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE 
       22.19        27.98       169.38        67.86         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
       10.42        10.55         7.79        27.22        13.25         9.60 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
       23.05         2.53        16.14         5.06        18.67         3.48 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        4.21         3.68         3.42        58.45        35.54        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       33.86        18.02        14.04        25.48        20.45         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 
       12.13        12.10        10.65        11.18        18.54        16.11 
TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A620 
        0.49         3.02        19.23         0.10        12.62         0.43 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.20        13.38         1.91         4.37         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8635 TCGA-HD-A4C1 
        0.82         1.22         1.81         1.45         0.82         0.36 
TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.61         0.33         1.08        34.75        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J 
       14.50        19.33        11.84        13.55         0.07        14.47 
TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X 
        5.29        11.84         7.36         6.90         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5Q6 
       12.89         1.84         3.65         3.68        29.92        15.78 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 
       54.31        23.70        10.85        36.82        47.01        19.00 
TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 
       63.02        18.97         2.04        12.99        16.01        13.15 
TCGA-QK-A64Z 
       18.18 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             0.46              0.07 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           129.21            210.97 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            14.07             16.64 
[1] "0.5 - 129.2 (14.1)" "0.1 - 211.0 (16.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D41V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  1P LOSS MUTATED         3        4         9        23         0
  1P LOSS WILD-TYPE      21       58        57       166         8
D41V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1P LOSS MUTATED     4   9  13  14
  1P LOSS WILD-TYPE  35  94  71 114
D41V4, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  T1               4                35
  T2               9                94
  T3              13                71
  T4              14               114
                   vv
clus                 N0  N1  N2  N3
  1P LOSS MUTATED    18   5  14   0
  1P LOSS WILD-TYPE 116  47 111   7
D41V5, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  N0              18               116
  N1               5                47
  N2              14               111
  N3               0                 7
D41V6, binary
                   cls
clus                 0  1
  1P LOSS MUTATED   13  3
  1P LOSS WILD-TYPE 90 40
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED     13    3
  1P LOSS WILD-TYPE   90   40
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  M0              13                90
  MX               3                40
D41V7, binary
                   cls
clus                  0   1
  1P LOSS MUTATED    10  35
  1P LOSS WILD-TYPE 106 253
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED     10   35
  1P LOSS WILD-TYPE  106  253
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  FEMALE              10               106
  MALE                35               253
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  1P LOSS MUTATED                                      44
  1P LOSS WILD-TYPE                                   353
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  1P LOSS MUTATED                                                             0
  1P LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  1P LOSS MUTATED                                                     1
  1P LOSS WILD-TYPE                                                   5
D41V8, multiclass
                                                             clus
vv                                                            1P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    44
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       1
                                                             clus
vv                                                            1P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     353
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         5
D41V9, binary
                   cls
clus                  0   1
  1P LOSS MUTATED    10  35
  1P LOSS WILD-TYPE  69 290
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED     10   35
  1P LOSS WILD-TYPE   69  290
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO               10                69
  YES              35               290
D41V10, continuous
D41V11, continuous
D41V12, continuous

Clustering(42) Variable = 1Q LOSS MUTATION ANALYSIS
D42V1, survival
                   sevent
clus2                 0   1
  1Q LOSS MUTATED    18  12
  1Q LOSS WILD-TYPE 229 140
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               30               369 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               12               140 
$`1Q LOSS MUTATED`
TCGA-BA-5149 TCGA-BA-5152 TCGA-C9-A47Z TCGA-CN-4736 TCGA-CN-5355 TCGA-CN-6012 
        8.15        42.35         0.16        12.99        16.04        20.68 
TCGA-CN-6018 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-A63T TCGA-CN-A63W TCGA-CQ-6220 
        1.48         3.91         3.68         7.40        11.44        32.38 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-A4C7 TCGA-CR-7365 TCGA-CR-7372 TCGA-CV-5432 
       13.25         4.24        11.61        39.16        24.95       129.21 
TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-6003 TCGA-CV-6950 TCGA-CV-7416 TCGA-CV-7424 
       17.95        94.88        54.74        15.09        25.08        14.89 
TCGA-DQ-7588 TCGA-F7-8489 TCGA-F7-A61W TCGA-HD-8634 TCGA-IQ-A61L TCGA-MZ-A6I9 
       14.04        21.63         0.46         0.79        11.54         8.35 

$`1Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.19         9.30        13.64        37.28         9.07        23.74 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.93        17.10        23.84        20.48        53.79        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        6.25        21.17        14.83         2.07        12.62         3.72 
TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD 
        7.76        29.42        16.87        11.54         7.10         5.69 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.98         7.82         6.15        94.62         9.14         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.35        10.19        17.62        13.91        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.91        14.07        14.33        71.05        20.52 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
        0.13        26.27        23.70        15.95         4.67        14.86 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       20.15        12.89        15.19        32.65        21.11        21.11 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       17.79        14.33        34.68        26.66        41.69        13.05 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
       16.83         5.69        12.39        35.54         8.32        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        22.45 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        9.53        14.73        13.94        14.24        10.39        20.68 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
       12.85         3.22         9.07         6.64        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
       10.45        20.09        12.95        14.20        13.08         1.51 
TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 
       14.70        17.29        15.91         5.75        12.07         2.70 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.20        39.68        21.50         2.93        54.58        46.75 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        45.99        10.42        11.21         4.24        28.60 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.88        34.75        32.38        14.99        26.79        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 
       45.30        33.11        16.73        43.04        29.62        28.83 
TCGA-CQ-A4C6 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG 
       31.82        20.15        17.92        18.02        12.92        12.85 
TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
        9.96        19.99        84.23        11.77        54.67        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.27        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.54        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.69        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       47.18        47.34        40.93        35.84         3.45         3.09 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.06        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.58 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.95        35.41        29.95        48.39 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 
      139.43        17.16       108.33        47.28        19.20       107.51 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.50        91.53        80.12        17.06        13.35        23.05 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 
       86.83        48.59        60.49         7.07        43.23        21.07 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       62.43         9.60        90.12         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.73        21.90        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       19.79        12.03        42.38        30.08         6.08        53.95 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.42        28.34         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.83       126.15       111.16        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.26         1.84        52.31        12.92 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.80        71.21        10.75       114.97        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.36        26.20        18.97        17.13 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.85       210.97        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
      100.57        56.48       156.49        54.94         3.52        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.76         7.17       142.52        16.64         6.38 
TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE 
       22.19        27.98       169.38        67.86         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.42        10.55         7.79        27.22        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        9.60        23.05         2.53        16.14         5.06        18.67 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 
        3.48         4.21         3.68         3.42        58.45        35.54 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       16.96        33.86        18.02        18.90        25.48        20.45 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 
        9.83        12.13        12.10        10.65        11.18        18.54 
TCGA-F7-8298 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V 
       16.11         0.49         3.02        19.23         0.10        12.62 
TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.43         0.20        13.38         1.91         4.37         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8635 
        0.16         0.82         1.22         1.81         1.45         0.82 
TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 
        0.36         1.61         0.33         1.08        34.75        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I 
        4.01        14.50        19.33        11.84        13.55         0.07 
TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W 
       14.47         5.29        11.84         7.36         6.90         0.46 
TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 
        1.12        12.89         1.84         3.65         3.68        29.92 
TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX 
       15.78        54.31        23.70        10.85        36.82        47.01 
TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 
       19.00        63.02        18.97         2.04        29.00        12.99 
TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       16.01        13.15        18.18 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             0.16              0.07 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
           129.21            210.97 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
           13.645            16.730 
[1] "0.2 - 129.2 (13.6)" "0.1 - 211.0 (16.7)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D42V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  1Q LOSS MUTATED         2        3         6        17         0
  1Q LOSS WILD-TYPE      22       59        60       172         8
D42V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1Q LOSS MUTATED     3   6  11   9
  1Q LOSS WILD-TYPE  36  97  73 119
D42V4, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  T1               3                36
  T2               6                97
  T3              11                73
  T4               9               119
                   vv
clus                 N0  N1  N2  N3
  1Q LOSS MUTATED    13   3  11   0
  1Q LOSS WILD-TYPE 121  49 114   7
D42V5, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  N0              13               121
  N1               3                49
  N2              11               114
  N3               0                 7
D42V6, binary
                   cls
clus                 0  1
  1Q LOSS MUTATED    9  3
  1Q LOSS WILD-TYPE 94 40
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      9    3
  1Q LOSS WILD-TYPE   94   40
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  M0               9                94
  MX               3                40
D42V7, binary
                   cls
clus                  0   1
  1Q LOSS MUTATED     8  23
  1Q LOSS WILD-TYPE 108 265
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      8   23
  1Q LOSS WILD-TYPE  108  265
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  FEMALE               8               108
  MALE                23               265
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  1Q LOSS MUTATED                                      31
  1Q LOSS WILD-TYPE                                   366
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  1Q LOSS MUTATED                                                             0
  1Q LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  1Q LOSS MUTATED                                                     0
  1Q LOSS WILD-TYPE                                                   6
D42V8, multiclass
                                                             clus
vv                                                            1Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    31
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            1Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     366
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         6
D42V9, binary
                   cls
clus                  0   1
  1Q LOSS MUTATED     6  25
  1Q LOSS WILD-TYPE  73 300
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      6   25
  1Q LOSS WILD-TYPE   73  300
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                6                73
  YES              25               300
D42V10, continuous
D42V11, continuous
D42V12, continuous

Clustering(43) Variable = 2P LOSS MUTATION ANALYSIS
D43V1, survival
                   sevent
clus2                 0   1
  2P LOSS MUTATED    18   9
  2P LOSS WILD-TYPE 229 143
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               27               372 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                9               143 
$`2P LOSS MUTATED`
TCGA-BA-5559 TCGA-BA-6873 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7864 TCGA-C9-A47Z 
       57.44         3.72        10.19        17.62        22.59         0.16 
TCGA-CN-6011 TCGA-CN-A49B TCGA-CN-A63W TCGA-CQ-6218 TCGA-CQ-7064 TCGA-CV-5966 
       13.94        14.70        11.44        28.60        45.30        17.06 
TCGA-CV-5973 TCGA-CV-6003 TCGA-CV-6961 TCGA-CV-7252 TCGA-CV-7255 TCGA-CV-7432 
       86.83        54.74         2.50         4.96         2.10        84.49 
TCGA-D6-6826 TCGA-DQ-7588 TCGA-F7-A50J TCGA-F7-A623 TCGA-IQ-A61L TCGA-KU-A66T 
        5.06        14.04        19.23         0.20        11.54         6.90 
TCGA-MZ-A6I9 TCGA-P3-A5Q6 TCGA-P3-A6T5 
        8.35        15.78        29.00 

$`2P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.35        57.93        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       53.79         6.25        21.17        14.83         2.07        12.62 
TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD 
        7.76        29.42        16.87        11.54         7.10         5.69 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.98         7.82         6.15        94.62         9.14         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
        4.37        18.35        13.91        20.98        37.91        14.07 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       14.33        71.05        20.52         0.13        26.27        23.70 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       15.95         4.67        14.86        20.15        12.89        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       32.65        21.11        21.11        12.99        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       34.68        26.66        41.69        13.05        16.04        16.83 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        35.54         8.32        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        22.45         9.53 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       14.73        20.68        14.24        10.39        20.68         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
       12.85         3.22         9.07         6.64        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
       10.45        20.09        12.95         3.91         3.68        14.20 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y 
       13.08         1.51         7.40        17.29        15.91         5.75 
TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
       12.07         2.70        48.20        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       54.58        46.75        29.46        45.99        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
        4.24        32.38        32.88        34.75        32.38        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7067 
        4.24        14.99        26.79        48.03        33.11        16.73 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 
       43.04        29.62        28.83        31.82        11.61        20.15 
TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI 
       17.92        18.02        12.92        12.85         9.96        19.99 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.67        37.87        26.27        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.54        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.69 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.16 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.93        35.84         3.45         3.09        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.06        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.58 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.95        35.41        29.95        48.39 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      139.43        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95       107.51        94.88        76.50        91.53        80.12 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       13.35        23.05        48.59        60.49         7.07        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       21.07        62.43         9.60        90.12         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.73        21.90        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.38        15.09        30.08 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.95        65.82        10.98         7.13         8.42 
TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
       28.34         4.14        64.83       126.15       111.16        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.26         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.92        21.80        71.21        10.75       114.97        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.36        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 
       17.13        95.34        11.87        47.97        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       57.47        35.54        17.85       210.97        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.08        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.57        14.89        56.48       156.49        54.94         3.52 
TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       16.27        19.76         7.17       142.52        16.64         6.38 
TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE 
       22.19        27.98       169.38        67.86         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.42        10.55         7.79        27.22        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 
        9.60        23.05         2.53        16.14        18.67         3.48 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        4.21         3.68         3.42        58.45        35.54        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       33.86        18.02        18.90        25.48        20.45         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 
       12.13        12.10        10.65        11.18        18.54        16.11 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W 
       21.63         0.49         3.02         0.10        12.62         0.46 
TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.43        13.38         1.91         4.37         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.22         1.81         1.45         0.79         0.82 
TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 
        0.36         1.61         0.33         1.08        34.75        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I 
        4.01        14.50        19.33        11.84        13.55         0.07 
TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X 
       14.47         5.29        11.84         7.36         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5QA 
       12.89         1.84         3.65         3.68        29.92        54.31 
TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 
       23.70        10.85        36.82        47.01        19.00        63.02 
TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       18.97         2.04        12.99        16.01        13.15        18.18 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             0.16              0.07 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            86.83            210.97 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
           14.040            16.455 
[1] "0.2 - 86.8 (14.0)"  "0.1 - 211.0 (16.5)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D43V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  2P LOSS MUTATED         0        3         7        14         0
  2P LOSS WILD-TYPE      24       59        59       175         8
D43V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2P LOSS MUTATED     2   6   6  10
  2P LOSS WILD-TYPE  37  97  78 118
D43V4, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  T1               2                37
  T2               6                97
  T3               6                78
  T4              10               118
                   vv
clus                 N0  N1  N2  N3
  2P LOSS MUTATED     9   7   8   0
  2P LOSS WILD-TYPE 125  45 117   7
D43V5, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  N0               9               125
  N1               7                45
  N2               8               117
  N3               0                 7
D43V6, binary
                   cls
clus                 0  1
  2P LOSS MUTATED    5  5
  2P LOSS WILD-TYPE 98 38
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      5    5
  2P LOSS WILD-TYPE   98   38
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  M0               5                98
  MX               5                38
D43V7, binary
                   cls
clus                  0   1
  2P LOSS MUTATED    14  13
  2P LOSS WILD-TYPE 102 275
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED     14   13
  2P LOSS WILD-TYPE  102  275
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  FEMALE              14               102
  MALE                13               275
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  2P LOSS MUTATED                                      27
  2P LOSS WILD-TYPE                                   370
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  2P LOSS MUTATED                                                             0
  2P LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  2P LOSS MUTATED                                                     0
  2P LOSS WILD-TYPE                                                   6
D43V8, multiclass
                                                             clus
vv                                                            2P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    27
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            2P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     370
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         6
D43V9, binary
                   cls
clus                  0   1
  2P LOSS MUTATED     2  25
  2P LOSS WILD-TYPE  77 300
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      2   25
  2P LOSS WILD-TYPE   77  300
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO                2                77
  YES              25               300
D43V10, continuous
D43V11, continuous
D43V12, continuous

Clustering(44) Variable = 2Q LOSS MUTATION ANALYSIS
D44V1, survival
                   sevent
clus2                 0   1
  2Q LOSS MUTATED    24  10
  2Q LOSS WILD-TYPE 223 142
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               34               365 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               10               142 
$`2Q LOSS MUTATED`
TCGA-BA-5152 TCGA-BA-5559 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-7861 TCGA-BB-7862 
       42.35        57.44         2.07         3.72        10.19        17.62 
TCGA-BB-7864 TCGA-C9-A47Z TCGA-CN-4736 TCGA-CN-6018 TCGA-CN-6995 TCGA-CN-A49B 
       22.59         0.16        12.99         1.48         3.68        14.70 
TCGA-CN-A63W TCGA-CQ-5327 TCGA-CQ-7064 TCGA-CR-6472 TCGA-CR-6484 TCGA-CR-7371 
       11.44        54.58        45.30        34.52        11.64         3.09 
TCGA-CR-7399 TCGA-CR-7402 TCGA-CV-5973 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6961 
        5.95        29.95        86.83        54.74        90.12         2.50 
TCGA-CV-7252 TCGA-CV-7255 TCGA-D6-6826 TCGA-DQ-7593 TCGA-F7-A50J TCGA-F7-A620 
        4.96         2.10         5.06        12.13        19.23         0.43 
TCGA-IQ-A61L TCGA-KU-A66T TCGA-MZ-A6I9 TCGA-P3-A5Q6 
       11.54         6.90         8.35        15.78 

$`2Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       23.74        57.93        17.10        23.84        20.48        53.79 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF 
        6.25        21.17        14.83        12.62         7.76        29.42 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF 
       16.87        11.54         7.10         5.69         5.98         7.82 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.15        94.62         9.14         4.60         4.37        18.35 
TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       13.91        20.98        37.91        14.07        14.33        71.05 
TCGA-BB-8601 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       20.52         0.13        26.27        23.70        15.95         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
       14.86        20.15        12.89        15.19        32.65        21.11 
TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       21.11        17.79        14.33        34.68        26.66        41.69 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05        16.04        16.83         5.69        12.39        35.54 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.32        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        22.45         9.53        14.73        13.94        20.68 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
       14.24        10.39        20.68        12.85         3.22         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.64        13.94         7.36        10.45        20.09        12.95 
TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A63T TCGA-CN-A63U 
        3.91        14.20        13.08         1.51         7.40        17.29 
TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 
       15.91         5.75        12.07         2.70        48.20        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
       21.50         2.93        46.75        29.46        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.24        28.60        32.38        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.38        13.25         4.24        14.99        26.79        48.03 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 
       33.11        16.73        43.04        29.62        28.83        31.82 
TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG 
       11.61        20.15        17.92        18.02        12.92        12.85 
TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
        9.96        19.99        84.23        11.77        54.67        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 
       26.27        58.42        50.01        39.52        36.99        18.54 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 
       16.90         6.02        11.90        10.22        11.34         7.69 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.16 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7373 
       47.34        40.93        35.84         3.45        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.06        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.58         7.10 
TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
        5.13        35.41        48.39       139.43        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95       107.51        94.88 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.50        91.53        80.12        17.06        13.35        23.05 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 
       48.59        60.49         7.07        43.23        21.07        62.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
        9.60         2.14         9.70         5.46        20.52         4.73 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.90        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.38        15.09        30.08         6.08        53.95        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 
       10.98         7.13         8.42        28.34         4.14        64.83 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.15       111.16        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.26         1.84        52.31        12.92        21.80        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.97        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 
       31.36        26.20        18.97        17.13        95.34        11.87 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
       47.97        36.13        18.41        57.47        35.54        17.85 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.97        89.33         9.67         0.46        22.85        25.08 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.57        14.89        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.94         3.52        16.27        84.49        19.76 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O 
        7.17       142.52        16.64         6.38        22.19        27.98 
TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 
      169.38        67.86         5.98        24.66        10.42        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.79        27.22        13.25        25.41         9.60        23.05 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
        2.53        16.14        18.67         3.48         4.21         3.68 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        3.42        58.45        35.54        16.96        33.86        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7594 
       14.04        18.90        25.48        20.45         9.83        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G 
       10.65        11.18        18.54        16.11        21.63         0.49 
TCGA-F7-A50I TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A623 TCGA-H7-7774 
        3.02         0.10        12.62         0.46         0.20        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        1.91         4.37         0.07         0.16         0.82         1.22 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 
        1.81         1.45         0.79         0.82         0.36         1.61 
TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.33         1.08        34.75        15.95         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K 
       19.33        11.84        13.55         0.07        14.47         5.29 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D 
       11.84         7.36         0.46         1.12        12.89         1.84 
TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        3.65         3.68        29.92        54.31        23.70        10.85 
TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 
       36.82        47.01        19.00        63.02        18.97         2.04 
TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       29.00        12.99        16.01        13.15        18.18 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             0.16              0.07 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            90.12            210.97 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            11.59             16.83 
[1] "0.2 - 90.1 (11.6)"  "0.1 - 211.0 (16.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D44V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  2Q LOSS MUTATED         0        2        10        15         0
  2Q LOSS WILD-TYPE      24       60        56       174         8
D44V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2Q LOSS MUTATED     2   5  10  11
  2Q LOSS WILD-TYPE  37  98  74 117
D44V4, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  T1               2                37
  T2               5                98
  T3              10                74
  T4              11               117
                   vv
clus                 N0  N1  N2  N3
  2Q LOSS MUTATED     8   9  10   0
  2Q LOSS WILD-TYPE 126  43 115   7
D44V5, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  N0               8               126
  N1               9                43
  N2              10               115
  N3               0                 7
D44V6, binary
                   cls
clus                 0  1
  2Q LOSS MUTATED    9  4
  2Q LOSS WILD-TYPE 94 39
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      9    4
  2Q LOSS WILD-TYPE   94   39
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  M0               9                94
  MX               4                39
D44V7, binary
                   cls
clus                  0   1
  2Q LOSS MUTATED    17  17
  2Q LOSS WILD-TYPE  99 271
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED     17   17
  2Q LOSS WILD-TYPE   99  271
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  FEMALE              17                99
  MALE                17               271
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  2Q LOSS MUTATED                                      34
  2Q LOSS WILD-TYPE                                   363
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  2Q LOSS MUTATED                                                             0
  2Q LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  2Q LOSS MUTATED                                                     0
  2Q LOSS WILD-TYPE                                                   6
D44V8, multiclass
                                                             clus
vv                                                            2Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    34
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            2Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     363
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         6
D44V9, binary
                   cls
clus                  0   1
  2Q LOSS MUTATED     2  32
  2Q LOSS WILD-TYPE  77 293
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      2   32
  2Q LOSS WILD-TYPE   77  293
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO                2                77
  YES              32               293
D44V10, continuous
D44V11, continuous
D44V12, continuous

Clustering(45) Variable = 3P LOSS MUTATION ANALYSIS
D45V1, survival
                   sevent
clus2                 0   1
  3P LOSS MUTATED   129 101
  3P LOSS WILD-TYPE 118  51
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              230               169 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              101                51 
$`3P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5555 TCGA-BA-5558 
       15.19         9.30        13.64         8.15        17.10        53.79 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A6D8 
       21.17        14.83         2.07        12.62         7.76        16.87 
TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DE TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-7862 
       11.54         7.10         5.98         9.14         4.37        17.62 
TCGA-BB-7864 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       22.59        37.91        14.07        14.33        71.05        20.52 
TCGA-C9-A47Z TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4735 
        0.16        15.95         4.67        20.15        12.89        21.11 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4742 
       12.99        17.79        14.33        34.68        26.66        13.05 
TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
       16.04         5.69        12.39        35.54         8.32        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 
       11.54        11.84        11.57        22.45        14.73        13.94 
TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6024 TCGA-CN-6989 
       20.68        10.39         1.48        12.85         7.36        20.09 
TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
       12.95         3.68        14.20        13.08         1.51        14.70 
TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63W TCGA-CN-A641 TCGA-CQ-5326 TCGA-CQ-5330 
        7.40        17.29        11.44        12.07         2.93        29.46 
TCGA-CQ-5332 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 
       10.42        28.60        32.38        32.88        32.38         4.24 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7069 
       14.99        26.79        45.30        33.11        16.73        29.62 
TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE 
       31.82        11.61        20.15        17.92        18.02        12.92 
TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5250 TCGA-CR-6473 TCGA-CR-6477 
       19.99        84.23        11.77        26.27        36.99        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6482 TCGA-CR-6491 TCGA-CR-6493 TCGA-CR-7364 
        6.02        11.90        11.34        11.51         9.27        47.18 
TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       47.34        35.84         3.45         3.09        24.95        29.23 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7388 
        9.17        34.06        19.92        17.13        47.01        27.06 
TCGA-CR-7390 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5432 
       29.82         5.13        35.41        29.95       139.43       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95       107.51        94.88 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 
       80.12        17.06        13.35        86.83        48.59         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       43.23        54.74         9.60        90.12         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
        5.46        20.52        11.24        12.03        42.38        15.09 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       30.08         6.08        65.82         7.13         8.42        28.34 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7099 
        2.50         4.14        64.83       111.16        18.81         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 
        9.01         5.26         1.84        12.92        21.80        10.75 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 
       47.47        36.00        26.20        18.97        17.13         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7410 TCGA-CV-7413 
       11.87        47.97         2.10        18.41       210.97         9.67 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
        0.46        25.08        25.94        34.09       100.57        14.89 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-7435 
       54.94         3.52        16.27        84.49         7.17       142.52 
TCGA-CV-A461 TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 
       67.86        24.66        10.42         7.79        27.22        25.41 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-8568 TCGA-D6-8569 
        9.60        23.05        16.14         5.06         3.48         4.21 
TCGA-D6-A4ZB TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
        3.42        16.96        33.86        18.02        14.04        18.90 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-A50G TCGA-F7-A50I 
       20.45         9.83        18.54        16.11         0.49         3.02 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-8502 TCGA-HD-7229 
       19.23         0.10         0.46         0.43         4.37         0.07 
TCGA-HD-7753 TCGA-HD-8224 TCGA-HD-8635 TCGA-HD-A633 TCGA-IQ-7630 TCGA-IQ-A61G 
        0.16         1.81         0.82         1.61        15.95        11.84 
TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66T 
       13.55         0.07        14.47        11.54        11.84         6.90 
TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67D TCGA-P3-A5QA TCGA-P3-A6T3 TCGA-P3-A6T4 
        0.46         1.12         1.84        54.31        18.97         2.04 
TCGA-P3-A6T7 TCGA-QK-A64Z 
       16.01        18.18 

$`3P LOSS WILD-TYPE`
TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 
       37.28         9.07        23.74        42.35        57.93        23.84 
TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6873 TCGA-BA-A4IF TCGA-BA-A6DD 
       20.48        57.44         6.25         3.72        29.42         5.69 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 
        7.82         6.15        94.62         4.60        18.35        10.19 
TCGA-BB-7863 TCGA-BB-7866 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4727 
       13.91        20.98         0.13        26.27        23.70        14.86 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5369 
       15.19        32.65        21.11        41.69        16.83        12.49 
TCGA-CN-5370 TCGA-CN-5374 TCGA-CN-6013 TCGA-CN-6017 TCGA-CN-6020 TCGA-CN-6021 
        8.52         9.53        14.24        20.68         3.22         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6994 TCGA-CN-A63V TCGA-CN-A63Y 
        6.64        13.94        10.45         3.91        15.91         5.75 
TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 
        2.70        48.20        39.68        21.50        54.58        46.75 
TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-7063 
       45.99        11.21         4.24        34.75        13.25        48.03 
TCGA-CQ-7068 TCGA-CQ-7071 TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CR-5248 TCGA-CR-5249 
       43.04        28.83        12.85         9.96        54.67        37.87 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6481 
       58.42        50.01        39.52        34.52        18.54        10.22 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-7365 TCGA-CR-7368 
       11.64         7.69        12.46        15.75        39.16        40.93 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7389 TCGA-CR-7391 
        0.99        31.96        26.17        32.78        12.89        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 
       31.10        29.85        29.52        30.58         7.10         5.95 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5971 TCGA-CV-5977 
       48.39        17.16        76.50        91.53        23.05        60.49 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 
       21.07        62.43         4.73        21.90        26.43       126.08 
TCGA-CV-6943 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7103 
       19.79        53.95        10.98       126.15        12.66        52.31 
TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7243 TCGA-CV-7250 
       71.21       114.97        56.68         4.73        31.36        95.34 
TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7411 TCGA-CV-7415 
       36.13        57.47        35.54        17.85        89.33        22.85 
TCGA-CV-7421 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7433 TCGA-CV-7437 TCGA-CV-7438 
        0.07        56.48       156.49        19.76        16.64         6.38 
TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A6JD TCGA-CX-7085 TCGA-D6-6515 
       22.19        27.98       169.38         5.98        10.55        13.25 
TCGA-D6-6824 TCGA-D6-6827 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-7590 
        2.53        18.67         3.68        58.45        35.54        25.48 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8489 TCGA-F7-A61V 
       12.13        12.10        10.65        11.18        21.63        12.62 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 
        0.20        13.38         1.91         0.82         1.22         1.45 
TCGA-HD-8634 TCGA-HD-A4C1 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7631 
        0.79         0.36         0.33         1.08        34.75         4.01 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61K TCGA-KU-A66S TCGA-MT-A67A TCGA-MT-A67F 
       14.50        19.33         5.29         7.36        12.89         3.65 
TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QE TCGA-P3-A5QF 
        3.68         8.35        29.92        15.78        23.70        10.85 
TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T5 TCGA-P3-A6T6 
       36.82        47.01        19.00        63.02        29.00        12.99 
TCGA-P3-A6T8 
       13.15 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.07              0.07 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           210.97            169.38 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            15.04             19.00 
[1] "0.1 - 211.0 (15.0)" "0.1 - 169.4 (19.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
[1] "hr=" "1.7"
D45V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  3P LOSS MUTATED        14       31        37       120         5
  3P LOSS WILD-TYPE      10       31        29        69         3
D45V3, multiclass
                   vv
clus                T1 T2 T3 T4
  3P LOSS MUTATED   20 53 57 79
  3P LOSS WILD-TYPE 19 50 27 49
D45V4, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  T1              20                19
  T2              53                50
  T3              57                27
  T4              79                49
                   vv
clus                N0 N1 N2 N3
  3P LOSS MUTATED   73 30 85  4
  3P LOSS WILD-TYPE 61 22 40  3
D45V5, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  N0              73                61
  N1              30                22
  N2              85                40
  N3               4                 3
D45V6, binary
                   cls
clus                 0  1
  3P LOSS MUTATED   60 19
  3P LOSS WILD-TYPE 43 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     60   19
  3P LOSS WILD-TYPE   43   24
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  M0              60                43
  MX              19                24
D45V7, binary
                   cls
clus                  0   1
  3P LOSS MUTATED    58 176
  3P LOSS WILD-TYPE  58 112
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     58  176
  3P LOSS WILD-TYPE   58  112
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE              58                58
  MALE               176               112
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  3P LOSS MUTATED                                     232
  3P LOSS WILD-TYPE                                   165
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  3P LOSS MUTATED                                                             1
  3P LOSS WILD-TYPE                                                           0
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  3P LOSS MUTATED                                                     1
  3P LOSS WILD-TYPE                                                   5
D45V8, multiclass
                                                             clus
vv                                                            3P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   232
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       1
                                                             clus
vv                                                            3P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     165
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         5
D45V9, binary
                   cls
clus                  0   1
  3P LOSS MUTATED    50 184
  3P LOSS WILD-TYPE  29 141
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     50  184
  3P LOSS WILD-TYPE   29  141
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO               50                29
  YES             184               141
D45V10, continuous
D45V11, continuous
D45V12, continuous

Clustering(46) Variable = 3Q LOSS MUTATION ANALYSIS
D46V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED    25  28
  3Q LOSS WILD-TYPE 222 124
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               53               346 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               28               124 
$`3Q LOSS MUTATED`
TCGA-BA-4076 TCGA-BA-5555 TCGA-BA-5558 TCGA-BA-6871 TCGA-BA-A6DB TCGA-BB-7870 
       13.64        17.10        53.79         2.07         7.10        37.91 
TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-5366 TCGA-CN-6010 TCGA-CN-6018 TCGA-CN-6995 
       21.11        14.33        11.84        14.73         1.48         3.68 
TCGA-CN-6997 TCGA-CN-A63U TCGA-CN-A63W TCGA-CQ-5332 TCGA-CQ-6224 TCGA-CQ-7065 
       13.08        17.29        11.44        10.42        32.38        33.11 
TCGA-CQ-A4CD TCGA-CR-6473 TCGA-CR-6493 TCGA-CR-7373 TCGA-CR-7380 TCGA-CR-7383 
       18.02        36.99         9.27        29.23        19.92        17.13 
TCGA-CR-7390 TCGA-CR-7398 TCGA-CR-7401 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5966 
       29.82         5.13        35.41       108.33        47.28        17.06 
TCGA-CV-5976 TCGA-CV-6441 TCGA-CV-6937 TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6959 
       48.59         9.60        20.52        15.09         6.08         8.42 
TCGA-CV-6961 TCGA-CV-7100 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7418 
        2.50         9.01         4.96        11.87         2.10        25.94 
TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-A6JE TCGA-D6-6826 TCGA-DQ-7588 TCGA-F7-A620 
       54.94        16.27        24.66         5.06        14.04         0.43 
TCGA-HD-7753 TCGA-IQ-A61I TCGA-IQ-A61L TCGA-MT-A51W TCGA-MT-A51X 
        0.16         0.07        11.54         0.46         1.12 

$`3Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.19         9.30        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 
       42.35        57.93        23.84        20.48        57.44         6.25 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF 
       21.17        14.83        12.62         3.72         7.76        29.42 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 
       16.87        11.54         5.69         5.98         7.82         6.15 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
       94.62         9.14         4.60         4.37        18.35        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 
       17.62        13.91        22.59        20.98        14.07        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       71.05        20.52         0.16         0.13        26.27        23.70 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       15.95         4.67        14.86        20.15        12.89        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4740 
       32.65        21.11        12.99        17.79        34.68        26.66 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       41.69        13.05        16.04        16.83         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 
       35.54         8.32        16.21        11.54        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
        8.52        22.45         9.53        13.94        20.68        14.24 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       10.39        20.68        12.85         3.22         9.07         6.64 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
       13.94         7.36        10.45        20.09        12.95         3.91 
TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63V TCGA-CN-A63Y 
       14.20         1.51        14.70         7.40        15.91         5.75 
TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
       12.07         2.70        48.20        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 
       54.58        46.75        29.46        45.99        11.21         4.24 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 
       28.60        32.38        32.88        34.75        13.25         4.24 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CQ-7068 
       14.99        26.79        48.03        45.30        16.73        43.04 
TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB 
       29.62        28.83        31.82        11.61        20.15        17.92 
TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 
       12.92        12.85         9.96        19.99        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.67        37.87        26.27        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       34.52        18.54        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.69        12.46        11.51        15.75 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.16        47.34        40.93        35.84         3.45 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
        3.09        24.95         0.99        31.96         9.17        34.06 
TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 
       26.17        32.78        47.01        27.06        12.89        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 
       31.10        29.85        29.52        30.58         7.10         5.95 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 
       29.95        48.39       139.43        17.16       129.21        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95       107.51        94.88        76.50        91.53        80.12 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       13.35        23.05        86.83        60.49         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       54.74        21.07        62.43        90.12         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
        5.46         4.73        21.90        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6954 
       19.79        12.03        42.38        30.08        53.95        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
       10.98         7.13        28.34         4.14        64.83       126.15 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7101 TCGA-CV-7102 
      111.16        18.81        12.66         7.99         5.26         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.92        21.80        71.21        10.75       114.97 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.36        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 
       18.97        17.13        95.34        47.97        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       57.47        35.54        17.85       210.97        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        0.46        22.85        25.08         0.07        34.09       100.57 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 
       14.89        56.48       156.49         3.52        84.49        19.76 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O 
        7.17       142.52        16.64         6.38        22.19        27.98 
TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
      169.38        67.86         5.98        10.42        10.55         7.79 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        25.41         9.60        23.05         2.53 
TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
       16.14        18.67         3.48         4.21         3.68         3.42 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 
       58.45        35.54        16.96        33.86        18.02        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       25.48        20.45         9.83        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I 
       11.18        18.54        16.11        21.63         0.49         3.02 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A623 TCGA-H7-7774 
       19.23         0.10        12.62         0.46         0.20        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        1.91         4.37         0.07         0.82         1.22         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 
        1.45         0.79         0.82         0.36         1.61         0.33 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
        1.08        34.75        15.95         4.01        14.50        19.33 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66S 
       11.84        13.55        14.47         5.29        11.84         7.36 
TCGA-KU-A66T TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 
        6.90        12.89         1.84         3.65         3.68         8.35 
TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW 
       29.92        15.78        54.31        23.70        10.85        36.82 
TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 
       47.01        19.00        63.02        18.97         2.04        29.00 
TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       12.99        16.01        13.15        18.18 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             0.07              0.07 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
           108.33            210.97 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            14.04             16.78 
[1] "0.1 - 108.3 (14.0)" "0.1 - 211.0 (16.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D46V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  3Q LOSS MUTATED         5        5         5        32         1
  3Q LOSS WILD-TYPE      19       57        61       157         7
D46V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  3Q LOSS MUTATED     7   7  11  23
  3Q LOSS WILD-TYPE  32  96  73 105
D46V4, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  T1               7                32
  T2               7                96
  T3              11                73
  T4              23               105
                   vv
clus                 N0  N1  N2  N3
  3Q LOSS MUTATED    24   4  20   0
  3Q LOSS WILD-TYPE 110  48 105   7
D46V5, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  N0              24               110
  N1               4                48
  N2              20               105
  N3               0                 7
D46V6, binary
                   cls
clus                 0  1
  3Q LOSS MUTATED   13  2
  3Q LOSS WILD-TYPE 90 41
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED     13    2
  3Q LOSS WILD-TYPE   90   41
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  M0              13                90
  MX               2                41
D46V7, binary
                   cls
clus                  0   1
  3Q LOSS MUTATED    12  42
  3Q LOSS WILD-TYPE 104 246
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED     12   42
  3Q LOSS WILD-TYPE  104  246
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE              12               104
  MALE                42               246
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  3Q LOSS MUTATED                                      54
  3Q LOSS WILD-TYPE                                   343
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  3Q LOSS MUTATED                                                             0
  3Q LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  3Q LOSS MUTATED                                                     0
  3Q LOSS WILD-TYPE                                                   6
D46V8, multiclass
                                                             clus
vv                                                            3Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    54
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            3Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     343
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         6
D46V9, binary
                   cls
clus                  0   1
  3Q LOSS MUTATED     9  45
  3Q LOSS WILD-TYPE  70 280
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      9   45
  3Q LOSS WILD-TYPE   70  280
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                9                70
  YES              45               280
D46V10, continuous
D46V11, continuous
D46V12, continuous

Clustering(47) Variable = 4P LOSS MUTATION ANALYSIS
D47V1, survival
                   sevent
clus2                 0   1
  4P LOSS MUTATED    92  60
  4P LOSS WILD-TYPE 155  92
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              152               247 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               60                92 
$`4P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-A4IF TCGA-BA-A6D8 
       17.10        20.48        14.83         2.07        29.42        16.87 
TCGA-BA-A6DB TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-7861 TCGA-BB-7871 TCGA-BB-8596 
        7.10        94.62         9.14        10.19        14.07        71.05 
TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       20.52         0.16         0.13        23.70        15.95         4.67 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4735 TCGA-CN-4739 TCGA-CN-4742 
       20.15        12.89        15.19        21.11        34.68        13.05 
TCGA-CN-5355 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5374 TCGA-CN-6010 
       16.04        35.54         8.32        16.21         9.53        14.73 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6989 
       13.94        20.68         1.48        12.85         9.07        20.09 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
       12.95         3.91         3.68        13.08         1.51        14.70 
TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63W TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-6220 
        7.40        17.29        11.44        12.07        48.20        32.38 
TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CQ-A4C9 
       34.75        13.25        14.99        45.30        16.73        20.15 
TCGA-CQ-A4CD TCGA-CQ-A4CI TCGA-CR-5248 TCGA-CR-6472 TCGA-CR-6487 TCGA-CR-6488 
       18.02        19.99        54.67        34.52         7.69        12.46 
TCGA-CR-6491 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       11.51        39.16        47.34        35.84         3.45         3.09 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7383 TCGA-CR-7388 TCGA-CR-7390 
       24.95        29.23         0.99        17.13        27.06        29.82 
TCGA-CR-7398 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
        5.13        48.39        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5978 TCGA-CV-6441 TCGA-CV-6933 
       19.20       107.51        80.12         7.07         9.60        90.12 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6948 
        2.14         9.70        26.43        11.24       126.08        42.38 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6956 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7091 
       15.09        30.08         7.13         2.50         4.14       111.16 
TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       12.66         5.26        52.31        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7261 TCGA-CV-7407 
       36.00        26.20        18.97        17.13        36.13        35.54 
TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
        9.67        22.85        25.94        34.09       100.57        14.89 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
       16.27        84.49       142.52         6.38        22.19        10.42 
TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-A4Z9 TCGA-DQ-5629 TCGA-DQ-7589 
       27.22        25.41        23.05         3.68        16.96        18.90 
TCGA-F7-8298 TCGA-F7-A50G TCGA-F7-A61S TCGA-F7-A61V TCGA-H7-8502 TCGA-HD-7917 
       16.11         0.49         0.10        12.62         4.37         1.22 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-A633 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H 
        1.81         1.45         1.61        19.33        11.84        13.55 
TCGA-IQ-A61J TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A6SW 
       14.47         3.68         8.35        15.78        54.31        36.82 
TCGA-P3-A6SX TCGA-P3-A6T8 
       47.01        13.15 

$`4P LOSS WILD-TYPE`
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-5559 
       23.74        42.35        57.93        23.84        53.79        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6DA 
        6.25        21.17        12.62         3.72         7.76        11.54 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4225 TCGA-BB-4227 
        5.69         5.98         7.82         6.15         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       18.35        17.62        13.91        22.59        20.98        37.91 
TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4727 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 
       14.33        26.27        14.86        32.65        21.11        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5358 
       17.79        14.33        26.66        41.69        16.83         5.69 
TCGA-CN-5359 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       12.39        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6020 TCGA-CN-6022 
       22.45        14.24        10.39        20.68         3.22         6.64 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6996 TCGA-CN-A63V TCGA-CN-A63Y 
       13.94         7.36        10.45        14.20        15.91         5.75 
TCGA-CN-A642 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
        2.70        39.68        21.50         2.93        54.58        46.75 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        45.99        10.42        11.21         4.24        28.60 
TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7065 
       32.88        32.38         4.24        26.79        48.03        33.11 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4CB 
       43.04        29.62        28.83        31.82        11.61        17.92 
TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5249 
       12.92        12.85         9.96        84.23        11.77        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 
       26.27        58.42        50.01        39.52        36.99        18.54 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7376 TCGA-CR-7377 
       15.75         9.27        47.18        40.93        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 
       34.06        19.92        26.17        32.78        47.01        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.58         7.10 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5439 TCGA-CV-5441 
        5.95        35.41        29.95       139.43        17.95        94.88 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       76.50        91.53        17.06        13.35        23.05        86.83 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       48.59        60.49        43.23        54.74        21.07        62.43 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6943 TCGA-CV-6945 
        5.46        20.52         4.73        21.90        19.79        12.03 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 
        6.08        53.95        65.82        10.98         8.42        28.34 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 
       64.83       126.15        18.81         7.99         9.01         1.84 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7243 
       12.92        21.80        71.21        10.75       114.97        31.36 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 
       95.34         4.96        11.87        47.97         2.10        18.41 
TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7416 
       57.47        17.85       210.97        89.33         0.46        25.08 
TCGA-CV-7421 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7433 
        0.07        56.48       156.49        54.94         3.52        19.76 
TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD 
        7.17        16.64        27.98       169.38        67.86         5.98 
TCGA-CV-A6JE TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6824 
       24.66        10.55         7.79        13.25         9.60         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4ZB 
       16.14         5.06        18.67         3.48         4.21         3.42 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 
       58.45        35.54        33.86        18.02        14.04        25.48 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       20.45         9.83        12.13        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61W TCGA-F7-A620 
       18.54        21.63         3.02        19.23         0.46         0.43 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.20        13.38         1.91         0.07         0.16         0.82 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 
        0.79         0.82         0.36         0.33         1.08        34.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61I TCGA-IQ-A61K TCGA-IQ-A61L 
       15.95         4.01        14.50         0.07         5.29        11.54 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
       11.84         7.36         6.90         0.46         1.12        12.89 
TCGA-MT-A67D TCGA-MT-A67F TCGA-P3-A5Q5 TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6T0 
        1.84         3.65        29.92        23.70        10.85        19.00 
TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 
       63.02        18.97         2.04        29.00        12.99        16.01 
TCGA-QK-A64Z 
       18.18 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.10              0.07 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           142.52            210.97 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           16.075            16.640 
[1] "0.1 - 142.5 (16.1)" "0.1 - 211.0 (16.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D47V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  4P LOSS MUTATED        11       20        27        76         4
  4P LOSS WILD-TYPE      13       42        39       113         4
D47V3, multiclass
                   vv
clus                T1 T2 T3 T4
  4P LOSS MUTATED   16 35 39 48
  4P LOSS WILD-TYPE 23 68 45 80
D47V4, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  T1              16                23
  T2              35                68
  T3              39                45
  T4              48                80
                   vv
clus                N0 N1 N2 N3
  4P LOSS MUTATED   49 21 54  4
  4P LOSS WILD-TYPE 85 31 71  3
D47V5, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  N0              49                85
  N1              21                31
  N2              54                71
  N3               4                 3
D47V6, binary
                   cls
clus                 0  1
  4P LOSS MUTATED   33 19
  4P LOSS WILD-TYPE 70 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     33   19
  4P LOSS WILD-TYPE   70   24
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  M0              33                70
  MX              19                24
D47V7, binary
                   cls
clus                  0   1
  4P LOSS MUTATED    39 114
  4P LOSS WILD-TYPE  77 174
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     39  114
  4P LOSS WILD-TYPE   77  174
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE              39                77
  MALE               114               174
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  4P LOSS MUTATED                                     150
  4P LOSS WILD-TYPE                                   247
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  4P LOSS MUTATED                                                             0
  4P LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  4P LOSS MUTATED                                                     3
  4P LOSS WILD-TYPE                                                   3
D47V8, multiclass
                                                             clus
vv                                                            4P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   150
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       3
                                                             clus
vv                                                            4P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     247
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         3
D47V9, binary
                   cls
clus                  0   1
  4P LOSS MUTATED    30 123
  4P LOSS WILD-TYPE  49 202
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     30  123
  4P LOSS WILD-TYPE   49  202
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO               30                49
  YES             123               202
D47V10, continuous
D47V11, continuous
D47V12, continuous

Clustering(48) Variable = 4Q LOSS MUTATION ANALYSIS
D48V1, survival
                   sevent
clus2                 0   1
  4Q LOSS MUTATED    73  42
  4Q LOSS WILD-TYPE 174 110
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              115               284 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               42               110 
$`4Q LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-6870 TCGA-BA-6873 
        9.30         9.07        17.10        20.48        14.83         3.72 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DB TCGA-BB-4227 TCGA-BB-7870 TCGA-BB-7871 
       29.42        16.87         7.10         4.37        37.91        14.07 
TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4725 TCGA-CN-4728 
       71.05        20.52         0.16         0.13        15.95        20.15 
TCGA-CN-4729 TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4742 TCGA-CN-5359 
       12.89        21.11        17.79        34.68        13.05        12.39 
TCGA-CN-5360 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6018 TCGA-CN-6019 
       35.54        14.73        13.94        20.68         1.48        12.85 
TCGA-CN-6021 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-6998 
        9.07        20.09         3.91         3.68        13.08         1.51 
TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63W TCGA-CQ-5323 TCGA-CQ-6220 
       14.70         7.40        17.29        11.44        48.20        32.38 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CQ-A4C9 
       32.38        13.25        14.99        45.30        16.73        20.15 
TCGA-CQ-A4CI TCGA-CR-5248 TCGA-CR-6472 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       19.99        54.67        34.52        11.64         7.69        12.46 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       39.16        47.34         3.45         3.09        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7383 TCGA-CR-7392 TCGA-CR-7398 TCGA-CR-7404 TCGA-CV-5431 
        0.99        17.13        31.10         5.13        48.39        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5444 
      129.21       108.33        47.28        17.95       107.51        80.12 
TCGA-CV-5976 TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6935 TCGA-CV-6941 TCGA-CV-6942 
       48.59        54.74         9.60         9.70        11.24       126.08 
TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7101 
       65.82         7.13         4.14       111.16        12.66         5.26 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7261 
       52.31        12.92        10.75        18.97        17.13        36.13 
TCGA-CV-7407 TCGA-CV-7413 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       35.54         9.67        25.94        34.09       100.57        14.89 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7435 TCGA-CV-7440 TCGA-CX-7086 TCGA-CX-7219 
        3.52        16.27       142.52        22.19         7.79        27.22 
TCGA-D6-6823 TCGA-DQ-5629 TCGA-DQ-7589 TCGA-DQ-7592 TCGA-F7-A50G TCGA-F7-A61S 
       23.05        16.96        18.90         9.83         0.49         0.10 
TCGA-HD-8634 TCGA-IQ-A61H TCGA-IQ-A61J TCGA-MT-A67G TCGA-P3-A5Q6 TCGA-P3-A5QA 
        0.79        13.55        14.47         3.68        15.78        54.31 
TCGA-P3-A6SX 
       47.01 

$`4Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.19        13.64        37.28         8.15        23.74        42.35 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 
       57.93        23.84        53.79        57.44         6.25        21.17 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BA-A6DE 
        2.07        12.62         7.76        11.54         5.69         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 
        7.82         6.15        94.62         9.14         4.60        18.35 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7872 
       10.19        17.62        13.91        22.59        20.98        14.33 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4731 
       26.27        23.70         4.67        14.86        15.19        32.65 
TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5355 
       21.11        12.99        14.33        26.66        41.69        16.04 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       16.83         5.69         8.32        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6013 
       11.57        12.49         8.52        22.45         9.53        14.24 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
       10.39        20.68         3.22         6.64        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6996 TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 
       10.45        12.95        14.20        15.91         5.75        12.07 
TCGA-CN-A642 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
        2.70        39.68        21.50         2.93        54.58        46.75 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        45.99        10.42        11.21         4.24        28.60 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7065 
       32.88        34.75         4.24        26.79        48.03        33.11 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4CB 
       43.04        29.62        28.83        31.82        11.61        17.92 
TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CR-5243 TCGA-CR-5247 
       18.02        12.92        12.85         9.96        84.23        11.77 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 
       37.87        26.27        58.42        50.01        39.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.54        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 
       11.51        15.75         9.27        47.18        40.93        35.84 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 
       31.96         9.17        34.06        19.92        26.17        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7393 
       47.01        27.06        12.89        29.82        30.02        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.58         7.10         5.95        35.41        29.95 
TCGA-CV-5430 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5966 
      139.43        19.20        94.88        76.50        91.53        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       13.35        23.05        86.83        60.49         7.07        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 
       21.07        62.43        90.12         2.14         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
        4.73        21.90        26.43        19.79        12.03        42.38 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6959 
       15.09        30.08         6.08        53.95        10.98         8.42 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7099 
       28.34         2.50        64.83       126.15        18.81         7.99 
TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 
        9.01         1.84        21.80        71.21       114.97        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7250 
        4.73        47.47        36.00        31.36        26.20        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 
        4.96        11.87        47.97         2.10        18.41        57.47 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
       17.85       210.97        89.33         0.46        22.85        25.08 
TCGA-CV-7421 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7432 TCGA-CV-7433 
        0.07        56.48       156.49        54.94        84.49        19.76 
TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 
        7.17        16.64         6.38        27.98       169.38        67.86 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6516 
        5.98        24.66        10.42        10.55        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        9.60         2.53        16.14         5.06        18.67         3.48 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 
        4.21         3.68         3.42        58.45        35.54        33.86 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 
       18.02        14.04        25.48        20.45        12.13        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50I 
       10.65        11.18        18.54        16.11        21.63         3.02 
TCGA-F7-A50J TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 
       19.23        12.62         0.46         0.43         0.20        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        1.91         4.37         0.07         0.16         0.82         1.22 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 
        1.81         1.45         0.82         0.36         1.61         0.33 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
        1.08        34.75        15.95         4.01        14.50        19.33 
TCGA-IQ-A61G TCGA-IQ-A61I TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S 
       11.84         0.07         5.29        11.54        11.84         7.36 
TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
        6.90         0.46         1.12        12.89         1.84         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6T0 
        8.35        29.92        23.70        10.85        36.82        19.00 
TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 
       63.02        18.97         2.04        29.00        12.99        16.01 
TCGA-P3-A6T8 TCGA-QK-A64Z 
       13.15        18.18 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.10              0.07 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           142.52            210.97 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           16.870            16.025 
[1] "0.1 - 142.5 (16.9)" "0.1 - 211.0 (16.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D48V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  4Q LOSS MUTATED         9       13        23        59         0
  4Q LOSS WILD-TYPE      15       49        43       130         8
D48V3, multiclass
                   vv
clus                T1 T2 T3 T4
  4Q LOSS MUTATED   12 25 31 36
  4Q LOSS WILD-TYPE 27 78 53 92
D48V4, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  T1              12                27
  T2              25                78
  T3              31                53
  T4              36                92
                   vv
clus                 N0  N1  N2  N3
  4Q LOSS MUTATED    33  18  42   0
  4Q LOSS WILD-TYPE 101  34  83   7
D48V5, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  N0              33               101
  N1              18                34
  N2              42                83
  N3               0                 7
D48V6, binary
                   cls
clus                 0  1
  4Q LOSS MUTATED   24 13
  4Q LOSS WILD-TYPE 79 30
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     24   13
  4Q LOSS WILD-TYPE   79   30
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  M0              24                79
  MX              13                30
D48V7, binary
                   cls
clus                  0   1
  4Q LOSS MUTATED    32  84
  4Q LOSS WILD-TYPE  84 204
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     32   84
  4Q LOSS WILD-TYPE   84  204
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE              32                84
  MALE                84               204
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  4Q LOSS MUTATED                                     115
  4Q LOSS WILD-TYPE                                   282
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  4Q LOSS MUTATED                                                             0
  4Q LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  4Q LOSS MUTATED                                                     1
  4Q LOSS WILD-TYPE                                                   5
D48V8, multiclass
                                                             clus
vv                                                            4Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   115
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       1
                                                             clus
vv                                                            4Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     282
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         5
D48V9, binary
                   cls
clus                  0   1
  4Q LOSS MUTATED    29  87
  4Q LOSS WILD-TYPE  50 238
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     29   87
  4Q LOSS WILD-TYPE   50  238
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO               29                50
  YES              87               238
D48V10, continuous
D48V11, continuous
D48V12, continuous

Clustering(49) Variable = 5P LOSS MUTATION ANALYSIS
D49V1, survival
                   sevent
clus2                 0   1
  5P LOSS MUTATED    23  16
  5P LOSS WILD-TYPE 224 136
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               39               360 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               16               136 
$`5P LOSS MUTATED`
TCGA-BA-6871 TCGA-BA-A6DA TCGA-BB-4224 TCGA-BB-7871 TCGA-CN-5355 TCGA-CN-5356 
        2.07        11.54         9.14        14.07        16.04        16.83 
TCGA-CN-6988 TCGA-CN-A63U TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-7069 TCGA-CQ-A4C9 
       10.45        17.29         2.93        10.42        29.62        20.15 
TCGA-CQ-A4CE TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7372 TCGA-CR-7379 TCGA-CV-5432 
       12.92         9.27        47.18        24.95        34.06       129.21 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6940 
       48.59        60.49        43.23        54.74        90.12        26.43 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7242 TCGA-CV-7248 TCGA-CV-7263 
       15.09        30.08         4.14        36.00        17.13        18.41 
TCGA-CV-7407 TCGA-CV-7414 TCGA-CV-7435 TCGA-CV-7438 TCGA-F7-A50G TCGA-IQ-A61G 
       35.54         0.46       142.52         6.38         0.49        11.84 
TCGA-IQ-A61H TCGA-P3-A5QF TCGA-P3-A6T5 
       13.55        10.85        29.00 

$`5P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.35        57.93        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 
       53.79        57.44         6.25        21.17        14.83        12.62 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DB TCGA-BA-A6DD 
        3.72         7.76        29.42        16.87         7.10         5.69 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 
        5.98         7.82         6.15        94.62         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.35        10.19        17.62        13.91        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 
       37.91        14.33        71.05        20.52         0.16         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
       26.27        23.70        15.95         4.67        14.86        20.15 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
       12.89        15.19        32.65        21.11        21.11        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       17.79        14.33        34.68        26.66        41.69        13.05 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        35.54         8.32        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        22.45         9.53 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       14.73        13.94        20.68        14.24        10.39        20.68 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48        12.85         3.22         9.07         6.64        13.94 
TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        7.36        20.09        12.95         3.91         3.68        14.20 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63V TCGA-CN-A63W 
       13.08         1.51        14.70         7.40        15.91        11.44 
TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        5.75        12.07         2.70        48.20        39.68        21.50 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 
       54.58        46.75        29.46        45.99        11.21         4.24 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.38        32.88        34.75        32.38        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.24        14.99        26.79        48.03        45.30        33.11 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4CB 
       16.73        43.04        28.83        31.82        11.61        17.92 
TCGA-CQ-A4CD TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 
       18.02        12.85         9.96        19.99        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.67        37.87        26.27        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.54        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.69        12.46        11.51 
TCGA-CR-6492 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       15.75        39.16        47.34        40.93        35.84         3.45 
TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7380 
        3.09        29.23         0.99        31.96         9.17        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.06        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.58 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.95        35.41        29.95        48.39 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
      139.43        17.16       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
      107.51        94.88        76.50        91.53        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6436 
       13.35        23.05        86.83         7.07        21.07        62.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
        9.60         2.14         9.70         5.46        20.52         4.73 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       21.90        11.24       126.08        19.79        12.03        42.38 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.95        65.82        10.98         7.13         8.42 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
       28.34         2.50        64.83       126.15       111.16        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.26         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.92        21.80        71.21        10.75       114.97        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7250 
        4.73        47.47        31.36        26.20        18.97        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7406 
        4.96        11.87        47.97         2.10        36.13        57.47 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 
       17.85       210.97        89.33         9.67        22.85        25.08 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.57        14.89        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.94         3.52        16.27        84.49        19.76 
TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 
        7.17        16.64        22.19        27.98       169.38        67.86 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        5.98        24.66        10.42        10.55         7.79        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        25.41         9.60        23.05         2.53        16.14 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
        5.06        18.67         3.48         4.21         3.68         3.42 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       58.45        35.54        16.96        33.86        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        25.48        20.45         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50I 
       10.65        11.18        18.54        16.11        21.63         3.02 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 
       19.23         0.10        12.62         0.46         0.43         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
       13.38         1.91         4.37         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 
        1.22         1.81         1.45         0.79         0.82         0.36 
TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.61         0.33         1.08        34.75        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L 
       14.50        19.33         0.07        14.47         5.29        11.54 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
       11.84         7.36         6.90         0.46         1.12        12.89 
TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 
        1.84         3.65         3.68         8.35        29.92        15.78 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 
       54.31        23.70        36.82        47.01        19.00        63.02 
TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       18.97         2.04        12.99        16.01        13.15        18.18 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             0.46              0.07 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           142.52            210.97 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            17.13             16.06 
[1] "0.5 - 142.5 (17.1)" "0.1 - 211.0 (16.1)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D49V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  5P LOSS MUTATED         2        6         9        21         0
  5P LOSS WILD-TYPE      22       56        57       168         8
D49V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5P LOSS MUTATED     2  11  11  14
  5P LOSS WILD-TYPE  37  92  73 114
D49V4, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  T1               2                37
  T2              11                92
  T3              11                73
  T4              14               114
                   vv
clus                 N0  N1  N2  N3
  5P LOSS MUTATED    11   5  18   0
  5P LOSS WILD-TYPE 123  47 107   7
D49V5, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  N0              11               123
  N1               5                47
  N2              18               107
  N3               0                 7
D49V6, binary
                   cls
clus                 0  1
  5P LOSS MUTATED    8  5
  5P LOSS WILD-TYPE 95 38
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      8    5
  5P LOSS WILD-TYPE   95   38
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  M0               8                95
  MX               5                38
D49V7, binary
                   cls
clus                  0   1
  5P LOSS MUTATED    13  26
  5P LOSS WILD-TYPE 103 262
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED     13   26
  5P LOSS WILD-TYPE  103  262
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  FEMALE              13               103
  MALE                26               262
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  5P LOSS MUTATED                                      39
  5P LOSS WILD-TYPE                                   358
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  5P LOSS MUTATED                                                             0
  5P LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  5P LOSS MUTATED                                                     0
  5P LOSS WILD-TYPE                                                   6
D49V8, multiclass
                                                             clus
vv                                                            5P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    39
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            5P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     358
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         6
D49V9, binary
                   cls
clus                  0   1
  5P LOSS MUTATED     3  36
  5P LOSS WILD-TYPE  76 289
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      3   36
  5P LOSS WILD-TYPE   76  289
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                3                76
  YES              36               289
D49V10, continuous
D49V11, continuous
D49V12, continuous

Clustering(50) Variable = 5Q LOSS MUTATION ANALYSIS
D50V1, survival
                   sevent
clus2                 0   1
  5Q LOSS MUTATED    84  44
  5Q LOSS WILD-TYPE 163 108
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              128               271 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               44               108 
$`5Q LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        9.30         9.07        17.10         2.07        12.62         3.72 
TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DE TCGA-BB-4217 
        7.76        16.87        11.54         7.10         5.98         6.15 
TCGA-BB-4224 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z 
        9.14        37.91        14.07        71.05        20.52         0.16 
TCGA-CN-4725 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4737 
       15.95        14.86        12.89        15.19        32.65        17.79 
TCGA-CN-4739 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5360 TCGA-CN-5366 
       34.68        13.05        16.04        16.83        35.54        11.84 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6019 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6992 
       14.73        20.68        12.85         7.36        10.45        12.95 
TCGA-CN-A63U TCGA-CN-A63W TCGA-CN-A641 TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-6225 
       17.29        11.44        12.07         2.93        10.42        13.25 
TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7069 TCGA-CQ-A4C9 
        4.24        26.79        45.30        33.11        29.62        20.15 
TCGA-CQ-A4CE TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5247 TCGA-CR-6474 TCGA-CR-6477 
       12.92         9.96        19.99        11.77        18.54        16.90 
TCGA-CR-6488 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 
       12.46         9.27        47.18        39.16        40.93        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7379 TCGA-CR-7390 TCGA-CR-7398 
        3.45         3.09        24.95        34.06        29.82         5.13 
TCGA-CR-7399 TCGA-CR-7404 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5440 TCGA-CV-5441 
        5.95        48.39       129.21        47.28       107.51        94.88 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       86.83        48.59        60.49         7.07        43.23        54.74 
TCGA-CV-6933 TCGA-CV-6940 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6959 TCGA-CV-6960 
       90.12        26.43        15.09        30.08         8.42        28.34 
TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7103 
        4.14       126.15       111.16        18.81         5.26        52.31 
TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7248 TCGA-CV-7254 
       21.80        10.75        36.00        31.36        17.13        47.97 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7414 TCGA-CV-7421 TCGA-CV-7424 
       36.13        18.41        35.54         0.46         0.07        14.89 
TCGA-CV-7429 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7086 
        3.52       142.52         6.38        24.66        10.42         7.79 
TCGA-D6-6823 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7592 TCGA-DQ-7594 
       23.05        18.02        14.04        18.90         9.83        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-A50G TCGA-F7-A61W TCGA-HD-7753 TCGA-HD-7917 
       10.65        18.54         0.49         0.46         0.16         1.22 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-KU-A66T TCGA-MT-A67D TCGA-P3-A5QF TCGA-P3-A6SX 
       11.84        13.55         6.90         1.84        10.85        47.01 
TCGA-P3-A6T3 TCGA-P3-A6T5 
       18.97        29.00 

$`5Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.19        13.64        37.28         8.15        23.74        42.35 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
       57.93        23.84        20.48        53.79        57.44         6.25 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-A4IF TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4223 
       21.17        14.83        29.42         5.69         7.82        94.62 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        4.60         4.37        18.35        10.19        17.62        13.91 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7872 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       22.59        20.98        14.33         0.13        26.27        23.70 
TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 
        4.67        20.15        21.11        21.11        12.99        14.33 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 
       26.66        41.69         5.69        12.39         8.32        16.21 
TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.54        11.57        12.49         8.52        22.45         9.53 
TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6020 
       13.94        14.24        10.39        20.68         1.48         3.22 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 
        9.07         6.64        13.94        20.09         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63V 
       14.20        13.08         1.51        14.70         7.40        15.91 
TCGA-CN-A63Y TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 
        5.75         2.70        48.20        39.68        21.50        54.58 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       46.75        29.46        45.99        11.21         4.24        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6228 TCGA-CQ-7063 
       32.38        32.88        34.75        32.38        14.99        48.03 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4CB 
       16.73        43.04        28.83        31.82        11.61        17.92 
TCGA-CQ-A4CD TCGA-CQ-A4CG TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       18.02        12.85        84.23        54.67        37.87        26.27 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 
       58.42        50.01        39.52        34.52        36.99         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 
       11.90        10.22        11.34        11.64         7.69        11.51 
TCGA-CR-6492 TCGA-CR-7367 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
       15.75        47.34        29.23         0.99        31.96         9.17 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.06 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.58 
TCGA-CR-7397 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 
        7.10        35.41        29.95       139.43        17.16       108.33 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       19.20        17.95        76.50        91.53        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 
       13.35        23.05        21.07        62.43         9.60         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 
        9.70         5.46        20.52         4.73        21.90        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6952 TCGA-CV-6953 
      126.08        19.79        12.03        42.38         6.08        53.95 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7097 
       65.82        10.98         7.13         2.50        64.83        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7183 
        7.99         9.01         1.84        12.92        71.21       114.97 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7250 
       56.68         4.73        47.47        26.20        18.97        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 
        4.96        11.87         2.10        57.47        17.85       210.97 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 
       89.33         9.67        22.85        25.08        25.94        34.09 
TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 
      100.57        56.48       156.49        54.94        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q 
       19.76         7.17        16.64        22.19        27.98       169.38 
TCGA-CV-A461 TCGA-CV-A6JD TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       67.86         5.98        10.55        27.22        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        9.60         2.53        16.14         5.06        18.67         3.48 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        4.21         3.68         3.42        58.45        35.54        16.96 
TCGA-DQ-5630 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7596 TCGA-F7-8298 
       33.86        25.48        20.45        12.13        11.18        16.11 
TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A620 
       21.63         3.02        19.23         0.10        12.62         0.43 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 
        0.20        13.38         1.91         4.37         0.07         0.82 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 
        1.81         1.45         0.79         0.82         0.36         1.61 
TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.33         1.08        34.75        15.95         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O 
       19.33         0.07        14.47         5.29        11.54        11.84 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67F TCGA-MT-A67G 
        7.36         0.46         1.12        12.89         3.65         3.68 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A6SW 
        8.35        29.92        15.78        54.31        23.70        36.82 
TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T4 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 
       19.00        63.02         2.04        12.99        16.01        13.15 
TCGA-QK-A64Z 
       18.18 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.07              0.07 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           142.52            210.97 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            15.57             16.27 
[1] "0.1 - 142.5 (15.6)" "0.1 - 211.0 (16.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D50V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  5Q LOSS MUTATED         5       22        25        62         1
  5Q LOSS WILD-TYPE      19       40        41       127         7
D50V3, multiclass
                   vv
clus                T1 T2 T3 T4
  5Q LOSS MUTATED    5 38 28 44
  5Q LOSS WILD-TYPE 34 65 56 84
D50V4, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  T1               5                34
  T2              38                65
  T3              28                56
  T4              44                84
                   vv
clus                N0 N1 N2 N3
  5Q LOSS MUTATED   38 19 45  1
  5Q LOSS WILD-TYPE 96 33 80  6
D50V5, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  N0              38                96
  N1              19                33
  N2              45                80
  N3               1                 6
D50V6, binary
                   cls
clus                 0  1
  5Q LOSS MUTATED   32 12
  5Q LOSS WILD-TYPE 71 31
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     32   12
  5Q LOSS WILD-TYPE   71   31
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  M0              32                71
  MX              12                31
D50V7, binary
                   cls
clus                  0   1
  5Q LOSS MUTATED    32  97
  5Q LOSS WILD-TYPE  84 191
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     32   97
  5Q LOSS WILD-TYPE   84  191
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE              32                84
  MALE                97               191
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  5Q LOSS MUTATED                                     128
  5Q LOSS WILD-TYPE                                   269
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  5Q LOSS MUTATED                                                             0
  5Q LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  5Q LOSS MUTATED                                                     1
  5Q LOSS WILD-TYPE                                                   5
D50V8, multiclass
                                                             clus
vv                                                            5Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   128
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       1
                                                             clus
vv                                                            5Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     269
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         5
D50V9, binary
                   cls
clus                  0   1
  5Q LOSS MUTATED    25 104
  5Q LOSS WILD-TYPE  54 221
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     25  104
  5Q LOSS WILD-TYPE   54  221
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO               25                54
  YES             104               221
D50V10, continuous
D50V11, continuous
D50V12, continuous

Clustering(51) Variable = 6P LOSS MUTATION ANALYSIS
D51V1, survival
                   sevent
clus2                 0   1
  6P LOSS MUTATED    30  25
  6P LOSS WILD-TYPE 217 127
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               55               344 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               25               127 
$`6P LOSS MUTATED`
TCGA-BA-5152 TCGA-BA-5559 TCGA-BB-4225 TCGA-BB-7862 TCGA-CN-4725 TCGA-CN-4728 
       42.35        57.44         4.60        17.62        15.95        20.15 
TCGA-CN-4729 TCGA-CN-4735 TCGA-CN-4740 TCGA-CN-5359 TCGA-CN-6010 TCGA-CN-6024 
       12.89        21.11        26.66        12.39        14.73         7.36 
TCGA-CN-6994 TCGA-CN-6997 TCGA-CN-A63T TCGA-CQ-5332 TCGA-CQ-6223 TCGA-CQ-A4C9 
        3.91        13.08         7.40        10.42        34.75        20.15 
TCGA-CR-6488 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7399 
       12.46         9.27        39.16         3.09        29.23         5.95 
TCGA-CR-7404 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-6441 
       48.39       108.33        19.20        91.53        80.12         9.60 
TCGA-CV-6940 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7247 
       26.43        28.34         4.14        18.81         5.26        18.97 
TCGA-CV-7248 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7263 TCGA-CV-7416 TCGA-CV-7418 
       17.13        11.87        47.97        18.41        25.08        25.94 
TCGA-D6-6823 TCGA-D6-6826 TCGA-DQ-5624 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 
       23.05         5.06        58.45        14.04        18.90        20.45 
TCGA-F7-A623 TCGA-IQ-A61G TCGA-IQ-A61I TCGA-MT-A67G TCGA-P3-A5Q6 TCGA-P3-A5QA 
        0.20        11.84         0.07         3.68        15.78        54.31 
TCGA-P3-A6T0 
       19.00 

$`6P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       23.74        57.93        17.10        23.84        20.48        53.79 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        6.25        21.17        14.83         2.07        12.62         3.72 
TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD 
        7.76        29.42        16.87        11.54         7.10         5.69 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        5.98         7.82         6.15        94.62         9.14         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       18.35        10.19        13.91        22.59        20.98        37.91 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 
       14.07        14.33        71.05        20.52         0.16         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4731 
       26.27        23.70         4.67        14.86        15.19        32.65 
TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4741 
       21.11        12.99        17.79        14.33        34.68        41.69 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 
       13.05        16.04        16.83         5.69        35.54         8.32 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
       22.45         9.53        13.94        20.68        14.24        10.39 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       20.68         1.48        12.85         3.22         9.07         6.64 
TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 
       13.94        10.45        20.09        12.95         3.68        14.20 
TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y 
        1.51        14.70        17.29        15.91        11.44         5.75 
TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
       12.07         2.70        48.20        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 
       54.58        46.75        29.46        45.99        11.21         4.24 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       28.60        32.38        32.88        32.38        13.25         4.24 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.99        26.79        48.03        45.30        33.11        16.73 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4CB 
       43.04        29.62        28.83        31.82        11.61        17.92 
TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 
       18.02        12.92        12.85         9.96        19.99        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.67        37.87        26.27        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.54        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 
       11.90        10.22        11.34        11.64         7.69        11.51 
TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       15.75        47.18        47.34        40.93        35.84         3.45 
TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       24.95         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.06        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.58 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 
        7.10         5.13        35.41        29.95       139.43        17.16 
TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
      129.21        47.28        17.95       107.51        94.88        76.50 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        23.05        86.83        48.59        60.49 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 
        7.07        43.23        54.74        21.07        62.43        90.12 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.73        21.90 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.38        15.09 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.08         6.08        53.95        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 
        8.42         2.50        64.83       126.15       111.16        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         1.84        52.31        12.92        21.80 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.97        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7255 
       36.00        31.36        26.20        95.34         4.96         2.10 
TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       36.13        57.47        35.54        17.85       210.97        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        9.67         0.46        22.85         0.07        34.09       100.57 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.89        56.48       156.49        54.94         3.52        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.76         7.17       142.52        16.64         6.38 
TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE 
       22.19        27.98       169.38        67.86         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.42        10.55         7.79        27.22        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        9.60         2.53        16.14        18.67         3.48         4.21 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        3.68         3.42        35.54        16.96        33.86        18.02 
TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       25.48         9.83        12.13        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J 
       18.54        16.11        21.63         0.49         3.02        19.23 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 
        0.10        12.62         0.46         0.43        13.38         1.91 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        4.37         0.07         0.16         0.82         1.22         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 
        1.45         0.79         0.82         0.36         1.61         0.33 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
        1.08        34.75        15.95         4.01        14.50        19.33 
TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S 
       13.55        14.47         5.29        11.54        11.84         7.36 
TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
        6.90         0.46         1.12        12.89         1.84         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX 
        8.35        29.92        23.70        10.85        36.82        47.01 
TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 
       63.02        18.97         2.04        29.00        12.99        16.01 
TCGA-P3-A6T8 TCGA-QK-A64Z 
       13.15        18.18 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             0.07              0.07 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           108.33            210.97 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           18.410            16.025 
[1] "0.1 - 108.3 (18.4)" "0.1 - 211.0 (16.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D51V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  6P LOSS MUTATED         1        8         9        30         0
  6P LOSS WILD-TYPE      23       54        57       159         8
D51V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6P LOSS MUTATED     4  11  14  19
  6P LOSS WILD-TYPE  35  92  70 109
D51V4, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  T1               4                35
  T2              11                92
  T3              14                70
  T4              19               109
                   vv
clus                 N0  N1  N2  N3
  6P LOSS MUTATED    15   6  20   0
  6P LOSS WILD-TYPE 119  46 105   7
D51V5, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  N0              15               119
  N1               6                46
  N2              20               105
  N3               0                 7
D51V6, binary
                   cls
clus                 0  1
  6P LOSS MUTATED   11  6
  6P LOSS WILD-TYPE 92 37
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED     11    6
  6P LOSS WILD-TYPE   92   37
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  M0              11                92
  MX               6                37
D51V7, binary
                   cls
clus                  0   1
  6P LOSS MUTATED    12  43
  6P LOSS WILD-TYPE 104 245
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED     12   43
  6P LOSS WILD-TYPE  104  245
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE              12               104
  MALE                43               245
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  6P LOSS MUTATED                                      55
  6P LOSS WILD-TYPE                                   342
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  6P LOSS MUTATED                                                             0
  6P LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  6P LOSS MUTATED                                                     0
  6P LOSS WILD-TYPE                                                   6
D51V8, multiclass
                                                             clus
vv                                                            6P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    55
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            6P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     342
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         6
D51V9, binary
                   cls
clus                  0   1
  6P LOSS MUTATED    12  43
  6P LOSS WILD-TYPE  67 282
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED     12   43
  6P LOSS WILD-TYPE   67  282
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO               12                67
  YES              43               282
D51V10, continuous
D51V11, continuous
D51V12, continuous

Clustering(52) Variable = 6Q LOSS MUTATION ANALYSIS
D52V1, survival
                   sevent
clus2                 0   1
  6Q LOSS MUTATED    36  20
  6Q LOSS WILD-TYPE 211 132
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               56               343 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               20               132 
$`6Q LOSS MUTATED`
TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5559 TCGA-BB-4225 TCGA-CN-4725 TCGA-CN-4728 
       42.35        17.10        57.44         4.60        15.95        20.15 
TCGA-CN-4729 TCGA-CN-4740 TCGA-CN-5359 TCGA-CN-6010 TCGA-CN-6024 TCGA-CN-6988 
       12.89        26.66        12.39        14.73         7.36        10.45 
TCGA-CN-6994 TCGA-CN-A641 TCGA-CQ-6223 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CR-5248 
        3.91        12.07        34.75        11.61        20.15        54.67 
TCGA-CR-6473 TCGA-CR-6491 TCGA-CR-7365 TCGA-CR-7373 TCGA-CR-7399 TCGA-CR-7404 
       36.99        11.51        39.16        29.23         5.95        48.39 
TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-6441 TCGA-CV-6940 
      108.33       107.51        91.53        80.12         9.60        26.43 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7235 
       53.95        65.82       111.16        18.81         5.26        56.68 
TCGA-CV-7247 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7263 TCGA-CV-7416 TCGA-D6-6823 
       18.97        11.87        47.97        18.41        25.08        23.05 
TCGA-D6-6826 TCGA-DQ-5624 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 
        5.06        58.45        18.02        14.04        18.90        20.45 
TCGA-F7-A50G TCGA-F7-A623 TCGA-HD-A633 TCGA-IQ-A61G TCGA-IQ-A61I TCGA-MT-A67G 
        0.49         0.20         1.61        11.84         0.07         3.68 
TCGA-P3-A6SW TCGA-P3-A6T0 
       36.82        19.00 

$`6Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 
       23.74        57.93        23.84        20.48        53.79         6.25 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       21.17        14.83         2.07        12.62         3.72         7.76 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       29.42        16.87        11.54         7.10         5.69         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        7.82         6.15        94.62         9.14         4.37        18.35 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.62        13.91        22.59        20.98        37.91 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 
       14.07        14.33        71.05        20.52         0.16         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4731 
       26.27        23.70         4.67        14.86        15.19        32.65 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       21.11        21.11        12.99        17.79        14.33        34.68 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 
       41.69        13.05        16.04        16.83         5.69        35.54 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.32        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
        8.52        22.45         9.53        13.94        20.68        14.24 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
       10.39        20.68         1.48        12.85         3.22         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 
        6.64        13.94        20.09        12.95         3.68        14.20 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V 
       13.08         1.51        14.70         7.40        17.29        15.91 
TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
       11.44         5.75         2.70        48.20        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        54.58        46.75        29.46        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 
       11.21         4.24        28.60        32.38        32.88        32.38 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.24        14.99        26.79        48.03        45.30 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 
       33.11        16.73        43.04        29.62        28.83        31.82 
TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI 
       17.92        18.02        12.92        12.85         9.96        19.99 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       84.23        11.77        37.87        26.27        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       39.52        34.52        18.54        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 
       10.22        11.34        11.64         7.69        12.46        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
        9.27        47.18        47.34        40.93        35.84         3.45 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
        3.09        24.95         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.06 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 
       30.58         7.10         5.13        35.41        29.95       139.43 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 
       17.16       129.21        47.28        19.20        17.95        94.88 
TCGA-CV-5442 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       76.50        17.06        13.35        23.05        86.83        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       60.49         7.07        43.23        54.74        21.07        62.43 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.12         2.14         9.70         5.46        20.52         4.73 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       21.90        11.24       126.08        19.79        12.03        42.38 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
       15.09        30.08         6.08        10.98         7.13         8.42 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7097 
       28.34         2.50         4.14        64.83       126.15        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         1.84        52.31        12.92        21.80 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       71.21        10.75       114.97         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7255 
       31.36        26.20        17.13        95.34         4.96         2.10 
TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       36.13        57.47        35.54        17.85       210.97        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.57        14.89        56.48       156.49        54.94         3.52 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.76         7.17       142.52        16.64 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD 
        6.38        22.19        27.98       169.38        67.86         5.98 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       24.66        10.42        10.55         7.79        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 
       25.41         9.60         2.53        16.14        18.67         3.48 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        4.21         3.68         3.42        35.54        16.96        33.86 
TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       25.48         9.83        12.13        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S 
       18.54        16.11        21.63         3.02        19.23         0.10 
TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
       12.62         0.46         0.43        13.38         1.91         4.37 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.22         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 
        0.79         0.82         0.36         0.33         1.08        34.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61H TCGA-IQ-A61J 
       15.95         4.01        14.50        19.33        13.55        14.47 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W 
        5.29        11.54        11.84         7.36         6.90         0.46 
TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 
        1.12        12.89         1.84         3.65         8.35        29.92 
TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SX TCGA-P3-A6T2 
       15.78        54.31        23.70        10.85        47.01        63.02 
TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 
       18.97         2.04        29.00        12.99        16.01        13.15 
TCGA-QK-A64Z 
       18.18 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.07              0.07 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           111.16            210.97 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           18.935            15.910 
[1] "0.1 - 111.2 (18.9)" "0.1 - 211.0 (15.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D52V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  6Q LOSS MUTATED         1        8         9        27         1
  6Q LOSS WILD-TYPE      23       54        57       162         7
D52V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6Q LOSS MUTATED     4  11  10  21
  6Q LOSS WILD-TYPE  35  92  74 107
D52V4, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  T1               4                35
  T2              11                92
  T3              10                74
  T4              21               107
                   vv
clus                 N0  N1  N2  N3
  6Q LOSS MUTATED    16   7  16   1
  6Q LOSS WILD-TYPE 118  45 109   6
D52V5, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  N0              16               118
  N1               7                45
  N2              16               109
  N3               1                 6
D52V6, binary
                   cls
clus                 0  1
  6Q LOSS MUTATED   12  6
  6Q LOSS WILD-TYPE 91 37
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     12    6
  6Q LOSS WILD-TYPE   91   37
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  M0              12                91
  MX               6                37
D52V7, binary
                   cls
clus                  0   1
  6Q LOSS MUTATED    10  46
  6Q LOSS WILD-TYPE 106 242
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     10   46
  6Q LOSS WILD-TYPE  106  242
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE              10               106
  MALE                46               242
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  6Q LOSS MUTATED                                      55
  6Q LOSS WILD-TYPE                                   342
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  6Q LOSS MUTATED                                                             0
  6Q LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  6Q LOSS MUTATED                                                     1
  6Q LOSS WILD-TYPE                                                   5
D52V8, multiclass
                                                             clus
vv                                                            6Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    55
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       1
                                                             clus
vv                                                            6Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     342
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         5
D52V9, binary
                   cls
clus                  0   1
  6Q LOSS MUTATED    12  44
  6Q LOSS WILD-TYPE  67 281
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     12   44
  6Q LOSS WILD-TYPE   67  281
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO               12                67
  YES              44               281
D52V10, continuous
D52V11, continuous
D52V12, continuous

Clustering(53) Variable = 7P LOSS MUTATION ANALYSIS
D53V1, survival
                   sevent
clus2                 0   1
  7P LOSS MUTATED    14   5
  7P LOSS WILD-TYPE 233 147
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               19               380 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                5               147 
$`7P LOSS MUTATED`
TCGA-BA-5559 TCGA-BA-A6DE TCGA-CN-5374 TCGA-CN-6992 TCGA-CN-6998 TCGA-CN-A49B 
       57.44         5.98         9.53        12.95         1.51        14.70 
TCGA-CN-A63U TCGA-CN-A63W TCGA-CR-6473 TCGA-CV-5435 TCGA-CV-6003 TCGA-CV-7242 
       17.29        11.44        36.99        47.28        54.74        36.00 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7433 TCGA-CX-7082 TCGA-F7-A50G TCGA-F7-A623 
        3.52        16.27        19.76        10.42         0.49         0.20 
TCGA-MZ-A6I9 
        8.35 

$`7P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.35        57.93        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       53.79         6.25        21.17        14.83         2.07        12.62 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB 
        3.72         7.76        29.42        16.87        11.54         7.10 
TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.69         7.82         6.15        94.62         9.14         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.35        10.19        17.62        13.91        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.91        14.07        14.33        71.05        20.52 
TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        0.16         0.13        26.27        23.70        15.95         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
       14.86        20.15        12.89        15.19        32.65        21.11 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       21.11        12.99        17.79        14.33        34.68        26.66 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       41.69        13.05        16.04        16.83         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       35.54         8.32        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
       12.49         8.52        22.45        14.73        13.94        20.68 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
       14.24        10.39        20.68         1.48        12.85         3.22 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.64        13.94         7.36        10.45        20.09 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-A63T TCGA-CN-A63V 
        3.91         3.68        14.20        13.08         7.40        15.91 
TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        5.75        12.07         2.70        48.20        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        54.58        46.75        29.46        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.24        28.60        32.38        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.38        13.25         4.24        14.99        26.79        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 
       45.30        33.11        16.73        43.04        29.62        28.83 
TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE 
       31.82        11.61        20.15        17.92        18.02        12.92 
TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       12.85         9.96        19.99        84.23        11.77        54.67 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.27        58.42        50.01        39.52        34.52 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.54        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.69        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.16        47.34        40.93        35.84         3.45 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.09        24.95        29.23         0.99        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.06        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.58         7.10         5.13         5.95        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.95        48.39       139.43        17.16       129.21       108.33 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95       107.51        94.88        76.50        91.53 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       80.12        17.06        13.35        23.05        86.83        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       60.49         7.07        43.23        21.07        62.43         9.60 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.12         2.14         9.70         5.46        20.52         4.73 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.90        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.38        15.09        30.08         6.08        53.95        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.42        28.34         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.83       126.15       111.16        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.26         1.84        52.31        12.92        21.80 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.97        56.68         4.73        47.47 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.36        26.20        18.97        17.13        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        57.47 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.85       210.97        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       22.85        25.08        25.94         0.07        34.09       100.57 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7432 TCGA-CV-7434 
       14.89        56.48       156.49        54.94        84.49         7.17 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q 
      142.52        16.64         6.38        22.19        27.98       169.38 
TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
       67.86         5.98        24.66        10.55         7.79        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        25.41         9.60        23.05         2.53        16.14 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
        5.06        18.67         3.48         4.21         3.68         3.42 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       58.45        35.54        16.96        33.86        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        25.48        20.45         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50I 
       10.65        11.18        18.54        16.11        21.63         3.02 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 
       19.23         0.10        12.62         0.46         0.43        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        1.91         4.37         0.07         0.16         0.82         1.22 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 
        1.81         1.45         0.79         0.82         0.36         1.61 
TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.33         1.08        34.75        15.95         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K 
       19.33        11.84        13.55         0.07        14.47         5.29 
TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X 
       11.54        11.84         7.36         6.90         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5Q6 
       12.89         1.84         3.65         3.68        29.92        15.78 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 
       54.31        23.70        10.85        36.82        47.01        19.00 
TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 
       63.02        18.97         2.04        29.00        12.99        16.01 
TCGA-P3-A6T8 TCGA-QK-A64Z 
       13.15        18.18 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             0.20              0.07 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            57.44            210.97 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
           12.950            16.425 
[1] "0.2 - 57.4 (12.9)"  "0.1 - 211.0 (16.4)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D53V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  7P LOSS MUTATED         0        2         3        11         0
  7P LOSS WILD-TYPE      24       60        63       178         8
D53V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7P LOSS MUTATED     1   5   5   5
  7P LOSS WILD-TYPE  38  98  79 123
D53V4, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  T1               1                38
  T2               5                98
  T3               5                79
  T4               5               123
                   vv
clus                 N0  N1  N2  N3
  7P LOSS MUTATED     3   3  10   0
  7P LOSS WILD-TYPE 131  49 115   7
D53V5, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  N0               3               131
  N1               3                49
  N2              10               115
  N3               0                 7
D53V6, binary
                   cls
clus                 0  1
  7P LOSS MUTATED    4  3
  7P LOSS WILD-TYPE 99 40
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      4    3
  7P LOSS WILD-TYPE   99   40
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  M0               4                99
  MX               3                40
D53V7, binary
                   cls
clus                  0   1
  7P LOSS MUTATED     5  14
  7P LOSS WILD-TYPE 111 274
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      5   14
  7P LOSS WILD-TYPE  111  274
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  FEMALE               5               111
  MALE                14               274
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  7P LOSS MUTATED                                      19
  7P LOSS WILD-TYPE                                   378
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  7P LOSS MUTATED                                                             0
  7P LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  7P LOSS MUTATED                                                     0
  7P LOSS WILD-TYPE                                                   6
D53V8, multiclass
                                                             clus
vv                                                            7P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    19
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            7P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     378
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         6
D53V9, binary
                   cls
clus                  0   1
  7P LOSS MUTATED     3  16
  7P LOSS WILD-TYPE  76 309
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      3   16
  7P LOSS WILD-TYPE   76  309
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                3                76
  YES              16               309
D53V10, continuous
D53V11, continuous
D53V12, continuous

Clustering(54) Variable = 7Q LOSS MUTATION ANALYSIS
D54V1, survival
                   sevent
clus2                 0   1
  7Q LOSS MUTATED    25  11
  7Q LOSS WILD-TYPE 222 141
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               36               363 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               11               141 
$`7Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-5152 TCGA-BA-5559 TCGA-BA-A6DE TCGA-BB-4224 
       15.19        13.64        42.35        57.44         5.98         9.14 
TCGA-BB-7863 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-5359 TCGA-CN-5374 
       13.91        15.19        32.65        17.79        12.39         9.53 
TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63W TCGA-CQ-6220 TCGA-CR-6474 
        1.51        14.70        17.29        11.44        32.38        18.54 
TCGA-CR-7365 TCGA-CR-7374 TCGA-CR-7398 TCGA-CV-5444 TCGA-CV-6003 TCGA-CV-6954 
       39.16         0.99         5.13        80.12        54.74        65.82 
TCGA-CV-7180 TCGA-CV-7429 TCGA-CV-7433 TCGA-CV-7438 TCGA-CX-7082 TCGA-D6-6823 
       10.75         3.52        19.76         6.38        10.42        23.05 
TCGA-F7-8489 TCGA-F7-A50G TCGA-IQ-7632 TCGA-KU-A66T TCGA-MZ-A6I9 TCGA-P3-A5QE 
       21.63         0.49        14.50         6.90         8.35        23.70 

$`7Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 
        9.30        37.28         9.07         8.15        23.74        57.93 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 
       17.10        23.84        20.48        53.79         6.25        21.17 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF 
       14.83         2.07        12.62         3.72         7.76        29.42 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4217 
       16.87        11.54         7.10         5.69         7.82         6.15 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
       94.62         4.60         4.37        18.35        10.19        17.62 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       22.59        20.98        37.91        14.07        14.33        71.05 
TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       20.52         0.16         0.13        26.27        23.70        15.95 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4733 TCGA-CN-4735 
        4.67        14.86        20.15        12.89        21.11        21.11 
TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.99        14.33        34.68        26.66        41.69        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
       16.04        16.83         5.69        35.54         8.32        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        22.45 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       14.73        13.94        20.68        14.24        10.39        20.68 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48        12.85         3.22         9.07         6.64        13.94 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36        10.45        20.09        12.95         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-A63T TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 
       14.20        13.08         7.40        15.91         5.75        12.07 
TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        2.70        48.20        39.68        21.50         2.93        54.58 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       46.75        29.46        45.99        10.42        11.21         4.24 
TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       28.60        32.88        34.75        32.38        13.25         4.24 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.99        26.79        48.03        45.30        33.11        16.73 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 
       43.04        29.62        28.83        31.82        11.61        20.15 
TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI 
       17.92        18.02        12.92        12.85         9.96        19.99 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.67        37.87        26.27        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        34.52        36.99        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.69        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 
       11.51        15.75         9.27        47.18        47.34        40.93 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 
       35.84         3.45         3.09        24.95        29.23        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
        9.17        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.06        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 
       29.85        29.52        30.58         7.10         5.95        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.95        48.39       139.43        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95       107.51        94.88        76.50 
TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       91.53        17.06        13.35        23.05        86.83        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       60.49         7.07        43.23        21.07        62.43         9.60 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.12         2.14         9.70         5.46        20.52         4.73 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.90        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 
       42.38        15.09        30.08         6.08        53.95        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.42        28.34         2.50         4.14        64.83 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.15       111.16        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.26         1.84        52.31        12.92        21.80        71.21 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.97        56.68         4.73        47.47        36.00        31.36 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.13        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        57.47        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.85       210.97        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.08        25.94         0.07        34.09       100.57        14.89 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 
       56.48       156.49        54.94        16.27        84.49         7.17 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 
      142.52        16.64        22.19        27.98       169.38        67.86 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
        5.98        24.66        10.55         7.79        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
       25.41         9.60         2.53        16.14         5.06        18.67 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 
        3.48         4.21         3.68         3.42        58.45        35.54 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        33.86        18.02        14.04        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       20.45         9.83        12.13        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V 
       18.54        16.11         3.02        19.23         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        0.46         0.43         0.20        13.38         1.91         4.37 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.22         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 
        0.79         0.82         0.36         1.61         0.33         1.08 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H 
       34.75        15.95         4.01        19.33        11.84        13.55 
TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S 
        0.07        14.47         5.29        11.54        11.84         7.36 
TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G 
        0.46         1.12        12.89         1.84         3.65         3.68 
TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX 
       29.92        15.78        54.31        10.85        36.82        47.01 
TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 
       19.00        63.02        18.97         2.04        29.00        12.99 
TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       16.01        13.15        18.18 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             0.49              0.07 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            80.12            210.97 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            14.60             16.64 
[1] "0.5 - 80.1 (14.6)"  "0.1 - 211.0 (16.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D54V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  7Q LOSS MUTATED         1        5         6        20         0
  7Q LOSS WILD-TYPE      23       57        60       169         8
D54V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7Q LOSS MUTATED     1  13   6  12
  7Q LOSS WILD-TYPE  38  90  78 116
D54V4, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  T1               1                38
  T2              13                90
  T3               6                78
  T4              12               116
                   vv
clus                 N0  N1  N2  N3
  7Q LOSS MUTATED    10   6  13   0
  7Q LOSS WILD-TYPE 124  46 112   7
D54V5, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  N0              10               124
  N1               6                46
  N2              13               112
  N3               0                 7
D54V6, binary
                   cls
clus                 0  1
  7Q LOSS MUTATED   10  5
  7Q LOSS WILD-TYPE 93 38
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED     10    5
  7Q LOSS WILD-TYPE   93   38
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  M0              10                93
  MX               5                38
D54V7, binary
                   cls
clus                  0   1
  7Q LOSS MUTATED    11  25
  7Q LOSS WILD-TYPE 105 263
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED     11   25
  7Q LOSS WILD-TYPE  105  263
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  FEMALE              11               105
  MALE                25               263
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  7Q LOSS MUTATED                                      35
  7Q LOSS WILD-TYPE                                   362
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  7Q LOSS MUTATED                                                             0
  7Q LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  7Q LOSS MUTATED                                                     1
  7Q LOSS WILD-TYPE                                                   5
D54V8, multiclass
                                                             clus
vv                                                            7Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    35
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       1
                                                             clus
vv                                                            7Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     362
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         5
D54V9, binary
                   cls
clus                  0   1
  7Q LOSS MUTATED     8  28
  7Q LOSS WILD-TYPE  71 297
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      8   28
  7Q LOSS WILD-TYPE   71  297
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                8                71
  YES              28               297
D54V10, continuous
D54V11, continuous
D54V12, continuous

Clustering(55) Variable = 8P LOSS MUTATION ANALYSIS
D55V1, survival
                   sevent
clus2                 0   1
  8P LOSS MUTATED    84  63
  8P LOSS WILD-TYPE 163  89
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              147               252 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               63                89 
$`8P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5558 TCGA-BA-6870 
       15.19        13.64         8.15        23.74        53.79        14.83 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DE TCGA-BB-4227 
       12.62         3.72         7.76        16.87         5.98         4.37 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7871 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4725 
       17.62        13.91        14.07         0.16         0.13        15.95 
TCGA-CN-4726 TCGA-CN-4736 TCGA-CN-4742 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5365 
        4.67        12.99        13.05        35.54         8.32        11.54 
TCGA-CN-5367 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6013 
       11.57         8.52        22.45         9.53        13.94        14.24 
TCGA-CN-6016 TCGA-CN-6020 TCGA-CN-6992 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-A49B 
       10.39         3.22        12.95        14.20        13.08        14.70 
TCGA-CN-A63U TCGA-CN-A641 TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6225 
       17.29        12.07         2.93        10.42         4.24        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.24        14.99        26.79        48.03        45.30        33.11 
TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CQ-A4C6 TCGA-CQ-A4CB TCGA-CR-5247 TCGA-CR-6471 
       16.73        29.62        31.82        17.92        11.77        39.52 
TCGA-CR-6474 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-7364 TCGA-CR-7369 TCGA-CR-7372 
       18.54        11.64        12.46        47.18        35.84        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7388 
       29.23         0.99        31.96         9.17        19.92        27.06 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5441 TCGA-CV-5444 
        5.95        35.41       129.21       108.33        94.88        80.12 
TCGA-CV-5966 TCGA-CV-5973 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6940 
       17.06        86.83        62.43        90.12         9.70        26.43 
TCGA-CV-6942 TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
      126.08         6.08        65.82         7.13         8.42        28.34 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7104 
        4.14        64.83       126.15         9.01         1.84        12.92 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7248 
       56.68         4.73        47.47        36.00        18.97        17.13 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 
        2.10        36.13         0.46        22.85        25.08         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7427 TCGA-CV-7434 TCGA-CV-7438 TCGA-CV-7440 
       34.09       100.57       156.49         7.17         6.38        22.19 
TCGA-CV-A6JD TCGA-CX-7219 TCGA-D6-6517 TCGA-D6-6825 TCGA-D6-A4Z9 TCGA-DQ-5624 
        5.98        27.22         9.60        16.14         3.68        58.45 
TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-F7-8298 TCGA-F7-8489 
       35.54        33.86        18.02         9.83        16.11        21.63 
TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-8501 TCGA-H7-8502 
        3.02        19.23         0.46         0.43         1.91         4.37 
TCGA-HD-7753 TCGA-HD-8224 TCGA-HD-8635 TCGA-HD-A633 TCGA-IQ-7630 TCGA-IQ-A61E 
        0.16         1.81         0.82         1.61        15.95        19.33 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L 
       11.84        13.55         0.07        14.47         5.29        11.54 
TCGA-KU-A66T TCGA-MT-A51X TCGA-MZ-A6I9 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A6SX 
        6.90         1.12         8.35        15.78        54.31        47.01 
TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       16.01        13.15        18.18 

$`8P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 
        9.30        37.28         9.07        42.35        57.93        17.10 
TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6871 
       23.84        20.48        57.44         6.25        21.17         2.07 
TCGA-BA-A4IF TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4217 
       29.42        11.54         7.10         5.69         7.82         6.15 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7864 
       94.62         9.14         4.60        18.35        10.19        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       20.98        37.91        14.33        71.05        20.52        26.27 
TCGA-CN-4723 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
       23.70        14.86        20.15        12.89        15.19        32.65 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       21.11        21.11        17.79        14.33        34.68        26.66 
TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5364 
       41.69        16.04        16.83         5.69        12.39        16.21 
TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6017 TCGA-CN-6018 
       11.84        12.49        14.73        20.68        20.68         1.48 
TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
       12.85         9.07         6.64        13.94         7.36        10.45 
TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6998 TCGA-CN-A63T TCGA-CN-A63V 
       20.09         3.91         3.68         1.51         7.40        15.91 
TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
       11.44         5.75         2.70        48.20        39.68        21.50 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-6218 
       54.58        46.75        29.46        45.99        11.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-7068 TCGA-CQ-7071 
       32.38        32.88        34.75        32.38        43.04        28.83 
TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH 
       11.61        20.15        18.02        12.92        12.85         9.96 
TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       19.99        84.23        54.67        37.87        26.27        58.42 
TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       50.01        34.52        36.99        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       10.22        11.34         7.69        11.51        15.75         9.27 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7379 
       39.16        47.34        40.93         3.45         3.09        34.06 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7390 
       26.17        17.13        32.78        47.01        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.58         7.10 
TCGA-CR-7398 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5435 
        5.13        29.95        48.39       139.43        17.16        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5970 
       19.20        17.95       107.51        76.50        91.53        13.35 
TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       23.05        48.59        60.49         7.07        43.23        54.74 
TCGA-CV-6433 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       21.07         9.60         2.14         5.46        20.52         4.73 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       21.90        11.24        19.79        12.03        42.38        15.09 
TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6961 TCGA-CV-7091 TCGA-CV-7095 
       30.08        53.95        10.98         2.50       111.16        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7178 
       12.66         7.99         5.26        52.31        21.80        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7250 TCGA-CV-7252 
       10.75       114.97        31.36        26.20        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
       11.87        47.97        18.41        57.47        35.54        17.85 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7418 TCGA-CV-7424 TCGA-CV-7425 
      210.97        89.33         9.67        25.94        14.89        56.48 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 
       54.94         3.52        16.27        84.49        19.76       142.52 
TCGA-CV-7437 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JE TCGA-CX-7082 
       16.64        27.98       169.38        67.86        24.66        10.42 
TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6824 
       10.55         7.79        13.25        25.41        23.05         2.53 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4ZB TCGA-DQ-5629 
        5.06        18.67         3.48         4.21         3.42        16.96 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 
       14.04        18.90        25.48        20.45        12.13        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-A50G TCGA-F7-A61S TCGA-F7-A61V 
       10.65        11.18        18.54         0.49         0.10        12.62 
TCGA-F7-A623 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 
        0.20        13.38         0.07         0.82         1.22         1.45 
TCGA-HD-8634 TCGA-HD-A4C1 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7631 
        0.79         0.36         0.33         1.08        34.75         4.01 
TCGA-IQ-7632 TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67D 
       14.50        11.84         7.36         0.46        12.89         1.84 
TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW 
        3.65         3.68        29.92        23.70        10.85        36.82 
TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 
       19.00        63.02        18.97         2.04        29.00        12.99 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.07              0.07 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           156.49            210.97 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            14.24             17.90 
[1] "0.1 - 156.5 (14.2)" "0.1 - 211.0 (17.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
[1] "hr=" "1.4"
D55V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  8P LOSS MUTATED        10       19        30        71         3
  8P LOSS WILD-TYPE      14       43        36       118         5
D55V3, multiclass
                   vv
clus                T1 T2 T3 T4
  8P LOSS MUTATED   16 34 37 47
  8P LOSS WILD-TYPE 23 69 47 81
D55V4, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  T1              16                23
  T2              34                69
  T3              37                47
  T4              47                81
                   vv
clus                N0 N1 N2 N3
  8P LOSS MUTATED   44 24 50  2
  8P LOSS WILD-TYPE 90 28 75  5
D55V5, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  N0              44                90
  N1              24                28
  N2              50                75
  N3               2                 5
D55V6, binary
                   cls
clus                 0  1
  8P LOSS MUTATED   42 17
  8P LOSS WILD-TYPE 61 26
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     42   17
  8P LOSS WILD-TYPE   61   26
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  M0              42                61
  MX              17                26
D55V7, binary
                   cls
clus                  0   1
  8P LOSS MUTATED    48 100
  8P LOSS WILD-TYPE  68 188
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     48  100
  8P LOSS WILD-TYPE   68  188
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE              48                68
  MALE               100               188
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  8P LOSS MUTATED                                     148
  8P LOSS WILD-TYPE                                   249
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  8P LOSS MUTATED                                                             0
  8P LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  8P LOSS MUTATED                                                     0
  8P LOSS WILD-TYPE                                                   6
D55V8, multiclass
                                                             clus
vv                                                            8P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   148
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            8P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     249
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         6
D55V9, binary
                   cls
clus                  0   1
  8P LOSS MUTATED    29 119
  8P LOSS WILD-TYPE  50 206
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     29  119
  8P LOSS WILD-TYPE   50  206
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO               29                50
  YES             119               206
D55V10, continuous
D55V11, continuous
D55V12, continuous

Clustering(56) Variable = 8Q LOSS MUTATION ANALYSIS
D56V1, survival
                   sevent
clus2                 0   1
  8Q LOSS MUTATED    14  10
  8Q LOSS WILD-TYPE 233 142
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               24               375 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               10               142 
$`8Q LOSS MUTATED`
TCGA-BA-4076 TCGA-BA-A6D8 TCGA-CN-4726 TCGA-CN-5360 TCGA-CN-5367 TCGA-CN-6011 
       13.64        16.87         4.67        35.54        11.57        13.94 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-A63U TCGA-CN-A641 TCGA-CQ-6225 TCGA-CQ-7063 
       14.24        10.39        17.29        12.07        13.25        48.03 
TCGA-CQ-7064 TCGA-CR-6471 TCGA-CV-6956 TCGA-CV-7242 TCGA-CV-7261 TCGA-CV-7415 
       45.30        39.52         7.13        36.00        36.13        22.85 
TCGA-CV-7440 TCGA-CV-A6JD TCGA-H7-8502 TCGA-IQ-7630 TCGA-MZ-A6I9 TCGA-P3-A6T7 
       22.19         5.98         4.37        15.95         8.35        16.01 

$`8Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.19         9.30        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       42.35        57.93        17.10        23.84        20.48        53.79 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         6.25        21.17        14.83         2.07        12.62 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD 
        3.72         7.76        29.42        11.54         7.10         5.69 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.98         7.82         6.15        94.62         9.14         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.35        10.19        17.62        13.91        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.91        14.07        14.33        71.05        20.52 
TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4727 
        0.16         0.13        26.27        23.70        15.95        14.86 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       20.15        12.89        15.19        32.65        21.11        21.11 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99        17.79        14.33        34.68        26.66        41.69 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 
       13.05        16.04        16.83         5.69        12.39         8.32 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       16.21        11.54        11.84        12.49         8.52        22.45 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        9.53        14.73        20.68        20.68         1.48        12.85 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.22         9.07         6.64        13.94         7.36        10.45 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
       20.09        12.95         3.91         3.68        14.20        13.08 
TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y 
        1.51        14.70         7.40        15.91        11.44         5.75 
TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        2.70        48.20        39.68        21.50         2.93        54.58 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       46.75        29.46        45.99        10.42        11.21         4.24 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 
       28.60        32.38        32.88        34.75        32.38         4.24 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       14.99        26.79        33.11        16.73        43.04        29.62 
TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD 
       28.83        31.82        11.61        20.15        17.92        18.02 
TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 
       12.92        12.85         9.96        19.99        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6472 
       54.67        37.87        26.27        58.42        50.01        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.54        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.69        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.16        47.34        40.93        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.45         3.09        24.95        29.23         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
        9.17        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.06        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.58         7.10         5.13         5.95 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.95        48.39       139.43        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95       107.51        94.88 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.50        91.53        80.12        17.06        13.35        23.05 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       86.83        48.59        60.49         7.07        43.23        54.74 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       21.07        62.43         9.60        90.12         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.73        21.90        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.38        15.09        30.08 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 
        6.08        53.95        65.82        10.98         8.42        28.34 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.83       126.15       111.16        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.26         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.92        21.80        71.21        10.75       114.97        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        31.36        26.20        18.97        17.13 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 
       95.34         4.96        11.87        47.97         2.10        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       57.47        35.54        17.85       210.97        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        0.46        25.08        25.94         0.07        34.09       100.57 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.89        56.48       156.49        54.94         3.52        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.76         7.17       142.52        16.64         6.38 
TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 
       27.98       169.38        67.86        24.66        10.42        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.79        27.22        13.25        25.41         9.60        23.05 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53        16.14         5.06        18.67         3.48         4.21 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        3.68         3.42        58.45        35.54        16.96        33.86 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        25.48        20.45         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 
       12.13        12.10        10.65        11.18        18.54        16.11 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V 
       21.63         0.49         3.02        19.23         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 
        0.46         0.43         0.20        13.38         1.91         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.22         1.81         1.45         0.79 
TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 
        0.82         0.36         1.61         0.33         1.08        34.75 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I 
        4.01        14.50        19.33        11.84        13.55         0.07 
TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T 
       14.47         5.29        11.54        11.84         7.36         6.90 
TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G 
        0.46         1.12        12.89         1.84         3.65         3.68 
TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW 
       29.92        15.78        54.31        23.70        10.85        36.82 
TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 
       47.01        19.00        63.02        18.97         2.04        29.00 
TCGA-P3-A6T6 TCGA-P3-A6T8 TCGA-QK-A64Z 
       12.99        13.15        18.18 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             4.37              0.07 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            48.03            210.97 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
           15.095            16.270 
[1] "4.4 - 48.0 (15.1)"  "0.1 - 211.0 (16.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D56V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  8Q LOSS MUTATED         1        3         4        14         0
  8Q LOSS WILD-TYPE      23       59        62       175         8
D56V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  8Q LOSS MUTATED     1   3   7  11
  8Q LOSS WILD-TYPE  38 100  77 117
D56V4, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  T1               1                38
  T2               3               100
  T3               7                77
  T4              11               117
                   vv
clus                 N0  N1  N2  N3
  8Q LOSS MUTATED     6   4   9   0
  8Q LOSS WILD-TYPE 128  48 116   7
D56V5, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  N0               6               128
  N1               4                48
  N2               9               116
  N3               0                 7
D56V6, binary
                   cls
clus                 0  1
  8Q LOSS MUTATED    8  4
  8Q LOSS WILD-TYPE 95 39
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      8    4
  8Q LOSS WILD-TYPE   95   39
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  M0               8                95
  MX               4                39
D56V7, binary
                   cls
clus                  0   1
  8Q LOSS MUTATED     5  20
  8Q LOSS WILD-TYPE 111 268
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      5   20
  8Q LOSS WILD-TYPE  111  268
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  FEMALE               5               111
  MALE                20               268
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  8Q LOSS MUTATED                                      25
  8Q LOSS WILD-TYPE                                   372
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  8Q LOSS MUTATED                                                             0
  8Q LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  8Q LOSS MUTATED                                                     0
  8Q LOSS WILD-TYPE                                                   6
D56V8, multiclass
                                                             clus
vv                                                            8Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    25
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            8Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     372
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         6
D56V9, binary
                   cls
clus                  0   1
  8Q LOSS MUTATED     6  19
  8Q LOSS WILD-TYPE  73 306
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      6   19
  8Q LOSS WILD-TYPE   73  306
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                6                73
  YES              19               306
D56V10, continuous
D56V11, continuous
D56V12, continuous

Clustering(57) Variable = 9P LOSS MUTATION ANALYSIS
D57V1, survival
                   sevent
clus2                 0   1
  9P LOSS MUTATED    80  58
  9P LOSS WILD-TYPE 167  94
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              138               261 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               58                94 
$`9P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-6868 TCGA-BA-6869 
       15.19        13.64         9.07        17.10         6.25        21.17 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 
       14.83         2.07        12.62         7.76        29.42        16.87 
TCGA-BA-A6DE TCGA-BB-4224 TCGA-BB-7862 TCGA-BB-7872 TCGA-BB-8601 TCGA-CN-4723 
        5.98         9.14        17.62        14.33        20.52        23.70 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4735 
        4.67        14.86        12.89        15.19        32.65        21.11 
TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-5360 TCGA-CN-5373 TCGA-CN-6018 TCGA-CN-6020 
       17.79        26.66        35.54        22.45         1.48         3.22 
TCGA-CN-6021 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6997 
        9.07         7.36        10.45        20.09        12.95        13.08 
TCGA-CN-A63W TCGA-CN-A641 TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-6221 TCGA-CQ-6225 
       11.44        12.07         2.93        10.42        32.88        13.25 
TCGA-CQ-6228 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CQ-A4CB 
       14.99        45.30        33.11        16.73        29.62        17.92 
TCGA-CR-5247 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6488 TCGA-CR-6491 
       11.77        34.52        18.54        16.90        12.46        11.51 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7383 
       47.18        39.16        40.93        24.95         0.99        17.13 
TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7398 TCGA-CR-7401 TCGA-CV-5430 TCGA-CV-5432 
       27.06        29.82         5.13        35.41       139.43       129.21 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5444 TCGA-CV-5973 TCGA-CV-5976 
       47.28        19.20        17.95        80.12        86.83        48.59 
TCGA-CV-5979 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6937 TCGA-CV-6940 
       43.23         9.60        90.12         2.14        20.52        26.43 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6960 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7101 
       12.03        42.38        28.34       111.16        12.66         5.26 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7236 TCGA-CV-7242 
       52.31        12.92        21.80        10.75         4.73        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7252 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7413 
       31.36        26.20         4.96         2.10        18.41         9.67 
TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7430 TCGA-CV-7432 
       22.85         0.07        34.09       100.57        16.27        84.49 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7440 TCGA-CV-A461 TCGA-CX-7082 TCGA-CX-7086 
        7.17       142.52        22.19        67.86        10.42         7.79 
TCGA-D6-6823 TCGA-D6-6826 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
       23.05         5.06         3.48         4.21         3.68         3.42 
TCGA-DQ-5629 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-A50I 
       16.96        18.02        14.04        10.65        18.54         3.02 
TCGA-F7-A61W TCGA-F7-A623 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8635 TCGA-HD-A633 
        0.46         0.20         0.16         0.82         0.82         1.61 
TCGA-IQ-7630 TCGA-IQ-A61G TCGA-IQ-A61J TCGA-KU-A66T TCGA-MT-A51X TCGA-MT-A67D 
       15.95        11.84        14.47         6.90         1.12         1.84 
TCGA-P3-A5Q6 TCGA-P3-A6SX TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T8 TCGA-QK-A64Z 
       15.78        47.01        18.97         2.04        13.15        18.18 

$`9P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
        9.30        37.28         8.15        23.74        42.35        57.93 
TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6873 TCGA-BA-A6DA 
       23.84        20.48        53.79        57.44         3.72        11.54 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 
        7.10         5.69         7.82         6.15        94.62         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
        4.37        18.35        10.19        13.91        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8596 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       37.91        14.07        71.05         0.16         0.13        26.27 
TCGA-CN-4725 TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
       15.95        20.15        21.11        12.99        14.33        34.68 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       41.69        13.05        16.04        16.83         5.69        12.39 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.32        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
        8.52         9.53        14.73        13.94        20.68        14.24 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6994 
       10.39        20.68        12.85         6.64        13.94         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U 
        3.68        14.20         1.51        14.70         7.40        17.29 
TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
       15.91         5.75         2.70        48.20        39.68        21.50 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 
       54.58        46.75        29.46        45.99        11.21         4.24 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 
       28.60        32.38        34.75        32.38         4.24        26.79 
TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 
       48.03        43.04        28.83        31.82        11.61        20.15 
TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 
       18.02        12.92        12.85         9.96        19.99        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.67        37.87        26.27        58.42        50.01        39.52 
TCGA-CR-6473 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       36.99         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 
        7.69        15.75         9.27        47.34        35.84         3.45 
TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
        3.09        29.23        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 
       26.17        32.78        47.01        12.89        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7402 
       29.85        29.52        30.58         7.10         5.95        29.95 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       48.39        17.16       108.33       107.51        94.88        76.50 
TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5977 TCGA-CV-5978 
       91.53        17.06        13.35        23.05        60.49         7.07 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 
       54.74        21.07        62.43         9.70         5.46         4.73 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 
       21.90        11.24       126.08        19.79        15.09        30.08 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.95        65.82        10.98         7.13         8.42 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7099 
        2.50         4.14        64.83       126.15        18.81         7.99 
TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7238 
        9.01         1.84        71.21       114.97        56.68        47.47 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       18.97        17.13        95.34        11.87        47.97        36.13 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 
       57.47        35.54        17.85       210.97        89.33         0.46 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       25.08        25.94        14.89        56.48       156.49        54.94 
TCGA-CV-7429 TCGA-CV-7433 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-A45O TCGA-CV-A45Q 
        3.52        19.76        16.64         6.38        27.98       169.38 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
        5.98        24.66        10.55        27.22        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
        9.60         2.53        16.14        18.67        58.45        35.54 
TCGA-DQ-5630 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       33.86        18.90        25.48        20.45         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7596 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50J 
       12.10        11.18        16.11        21.63         0.49        19.23 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        0.10        12.62         0.43        13.38         1.91         4.37 
TCGA-HD-7229 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-A4C1 
        0.07         1.22         1.81         1.45         0.79         0.36 
TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
        0.33         1.08        34.75         4.01        14.50        19.33 
TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S 
       13.55         0.07         5.29        11.54        11.84         7.36 
TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 
        0.46        12.89         3.65         3.68         8.35        29.92 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6T0 TCGA-P3-A6T2 
       54.31        23.70        10.85        36.82        19.00        63.02 
TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 
       29.00        12.99        16.01 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.07              0.07 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           142.52            210.97 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           15.485            16.640 
[1] "0.1 - 142.5 (15.5)" "0.1 - 211.0 (16.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
[1] "hr=" "1.3"
D57V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  9P LOSS MUTATED         8       21        22        67         1
  9P LOSS WILD-TYPE      16       41        44       122         7
D57V3, multiclass
                   vv
clus                T1 T2 T3 T4
  9P LOSS MUTATED   13 40 26 41
  9P LOSS WILD-TYPE 26 63 58 87
D57V4, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  T1              13                26
  T2              40                63
  T3              26                58
  T4              41                87
                   vv
clus                N0 N1 N2 N3
  9P LOSS MUTATED   44 20 46  1
  9P LOSS WILD-TYPE 90 32 79  6
D57V5, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  N0              44                90
  N1              20                32
  N2              46                79
  N3               1                 6
D57V6, binary
                   cls
clus                 0  1
  9P LOSS MUTATED   29 14
  9P LOSS WILD-TYPE 74 29
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     29   14
  9P LOSS WILD-TYPE   74   29
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  M0              29                74
  MX              14                29
D57V7, binary
                   cls
clus                  0   1
  9P LOSS MUTATED    35 103
  9P LOSS WILD-TYPE  81 185
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     35  103
  9P LOSS WILD-TYPE   81  185
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE              35                81
  MALE               103               185
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  9P LOSS MUTATED                                     138
  9P LOSS WILD-TYPE                                   259
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  9P LOSS MUTATED                                                             0
  9P LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  9P LOSS MUTATED                                                     0
  9P LOSS WILD-TYPE                                                   6
D57V8, multiclass
                                                             clus
vv                                                            9P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   138
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            9P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     259
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         6
D57V9, binary
                   cls
clus                  0   1
  9P LOSS MUTATED    28 110
  9P LOSS WILD-TYPE  51 215
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     28  110
  9P LOSS WILD-TYPE   51  215
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO               28                51
  YES             110               215
D57V10, continuous
D57V11, continuous
D57V12, continuous

Clustering(58) Variable = 9Q LOSS MUTATION ANALYSIS
D58V1, survival
                   sevent
clus2                 0   1
  9Q LOSS MUTATED    34  29
  9Q LOSS WILD-TYPE 213 123
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               63               336 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               29               123 
$`9Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 
       15.19        14.83         2.07         7.76        29.42        16.87 
TCGA-BB-8601 TCGA-CN-4740 TCGA-CN-6018 TCGA-CN-6020 TCGA-CN-6024 TCGA-CN-A63W 
       20.52        26.66         1.48         3.22         7.36        11.44 
TCGA-CQ-6221 TCGA-CQ-6228 TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-6472 
       32.88        14.99        16.73        29.62        11.77        34.52 
TCGA-CR-6474 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7390 
       18.54        47.18        39.16        24.95         0.99        29.82 
TCGA-CV-5430 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5973 TCGA-CV-5979 
      139.43        47.28        19.20        94.88        86.83        43.23 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6945 TCGA-CV-7091 
        9.60        90.12        20.52        26.43        12.03       111.16 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7180 TCGA-CV-7236 TCGA-CV-7243 
       18.81        12.66         5.26        10.75         4.73        31.36 
TCGA-CV-7252 TCGA-CV-7255 TCGA-CV-7413 TCGA-CV-7423 TCGA-CV-7430 TCGA-CV-7435 
        4.96         2.10         9.67       100.57        16.27       142.52 
TCGA-CV-7440 TCGA-CX-7082 TCGA-D6-6823 TCGA-DQ-5631 TCGA-F7-7848 TCGA-F7-A50I 
       22.19        10.42        23.05        18.02        18.54         3.02 
TCGA-F7-A623 TCGA-HD-7753 TCGA-HD-8635 TCGA-IQ-A61G TCGA-IQ-A61J TCGA-KU-A66T 
        0.20         0.16         0.82        11.84        14.47         6.90 
TCGA-MT-A67D TCGA-P3-A5Q6 TCGA-P3-A6T3 
        1.84        15.78        18.97 

$`9Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
        9.30        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       42.35        57.93        17.10        23.84        20.48        53.79 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-A6DA 
       57.44         6.25        21.17        12.62         3.72        11.54 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 
        7.10         5.69         5.98         7.82         6.15        94.62 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        9.14         4.60         4.37        18.35        10.19        17.62 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.91        22.59        20.98        37.91        14.07        14.33 
TCGA-BB-8596 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       71.05         0.16         0.13        26.27        23.70        15.95 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67        14.86        20.15        12.89        15.19        32.65 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       21.11        21.11        12.99        17.79        14.33        34.68 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       41.69        13.05        16.04        16.83         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       35.54         8.32        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        22.45         9.53        14.73        13.94 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6021 
       20.68        14.24        10.39        20.68        12.85         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.64        13.94        10.45        20.09        12.95         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T 
        3.68        14.20        13.08         1.51        14.70         7.40 
TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 
       17.29        15.91         5.75        12.07         2.70        48.20 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        54.58        46.75        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       45.99        10.42        11.21         4.24        28.60        32.38 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 
       34.75        32.38        13.25         4.24        26.79        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 
       45.30        33.11        43.04        28.83        31.82        11.61 
TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH 
       20.15        17.92        18.02        12.92        12.85         9.96 
TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       19.99        84.23        54.67        37.87        26.27        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       50.01        39.52        36.99        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.69        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       15.75         9.27        47.34        40.93        35.84         3.45 
TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
        3.09        29.23        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.06        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.58         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 
        5.13         5.95        35.41        29.95        48.39        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5443 
      129.21       108.33        17.95       107.51        76.50        91.53 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 
       80.12        17.06        13.35        23.05        48.59        60.49 
TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 
        7.07        54.74        21.07        62.43         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        5.46         4.73        21.90        11.24       126.08        19.79 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.38        15.09        30.08         6.08        53.95        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.42        28.34         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 
       64.83       126.15         7.99         9.01         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7238 
       12.92        21.80        71.21       114.97        56.68        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 
       36.00        26.20        18.97        17.13        95.34        11.87 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
       47.97        36.13        18.41        57.47        35.54        17.85 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
      210.97        89.33         0.46        22.85        25.08        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
        0.07        34.09        14.89        56.48       156.49        54.94 
TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 
        3.52        84.49        19.76         7.17        16.64         6.38 
TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7085 
       27.98       169.38        67.86         5.98        24.66        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 
        7.79        27.22        13.25        25.41         9.60         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
       16.14         5.06        18.67         3.48         4.21         3.68 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 
        3.42        58.45        35.54        16.96        33.86        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        25.48        20.45         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50J 
       10.65        11.18        16.11        21.63         0.49        19.23 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 
        0.10        12.62         0.46         0.43        13.38         1.91 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        4.37         0.07         0.82         1.22         1.81         1.45 
TCGA-HD-8634 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 
        0.79         0.36         1.61         0.33         1.08        34.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61H TCGA-IQ-A61I 
       15.95         4.01        14.50        19.33        13.55         0.07 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X 
        5.29        11.54        11.84         7.36         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QA 
       12.89         3.65         3.68         8.35        29.92        54.31 
TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 
       23.70        10.85        36.82        47.01        19.00        63.02 
TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
        2.04        29.00        12.99        16.01        13.15        18.18 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.16              0.07 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           142.52            210.97 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           16.730            16.075 
[1] "0.2 - 142.5 (16.7)" "0.1 - 211.0 (16.1)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D58V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  9Q LOSS MUTATED         4       11        10        30         0
  9Q LOSS WILD-TYPE      20       51        56       159         8
D58V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  9Q LOSS MUTATED     7  21   9  19
  9Q LOSS WILD-TYPE  32  82  75 109
D58V4, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  T1               7                32
  T2              21                82
  T3               9                75
  T4              19               109
                   vv
clus                 N0  N1  N2  N3
  9Q LOSS MUTATED    19   9  21   0
  9Q LOSS WILD-TYPE 115  43 104   7
D58V5, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  N0              19               115
  N1               9                43
  N2              21               104
  N3               0                 7
D58V6, binary
                   cls
clus                 0  1
  9Q LOSS MUTATED   15  8
  9Q LOSS WILD-TYPE 88 35
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     15    8
  9Q LOSS WILD-TYPE   88   35
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  M0              15                88
  MX               8                35
D58V7, binary
                   cls
clus                  0   1
  9Q LOSS MUTATED    18  45
  9Q LOSS WILD-TYPE  98 243
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     18   45
  9Q LOSS WILD-TYPE   98  243
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE              18                98
  MALE                45               243
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  9Q LOSS MUTATED                                      63
  9Q LOSS WILD-TYPE                                   334
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  9Q LOSS MUTATED                                                             0
  9Q LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  9Q LOSS MUTATED                                                     0
  9Q LOSS WILD-TYPE                                                   6
D58V8, multiclass
                                                             clus
vv                                                            9Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    63
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            9Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     334
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         6
D58V9, binary
                   cls
clus                  0   1
  9Q LOSS MUTATED    14  49
  9Q LOSS WILD-TYPE  65 276
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     14   49
  9Q LOSS WILD-TYPE   65  276
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO               14                65
  YES              49               276
D58V10, continuous
D58V11, continuous
D58V12, continuous

Clustering(59) Variable = 10P LOSS MUTATION ANALYSIS
D59V1, survival
                    sevent
clus2                  0   1
  10P LOSS MUTATED    68  56
  10P LOSS WILD-TYPE 179  96
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               124                275 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                56                 96 
$`10P LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-4078 TCGA-BA-5152 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 
        9.30         9.07        42.35        57.44         6.25        14.83 
TCGA-BA-6873 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BB-7870 TCGA-BB-7872 TCGA-BB-8601 
        3.72        29.42        16.87        37.91        14.33        20.52 
TCGA-C9-A47Z TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4737 TCGA-CN-5355 TCGA-CN-5359 
        0.16        23.70        15.95        17.79        16.04        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6018 
       35.54         8.32         9.53        13.94        20.68         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6996 TCGA-CN-6998 
       12.85         3.22         7.36        10.45        14.20         1.51 
TCGA-CN-A63U TCGA-CN-A63W TCGA-CQ-5323 TCGA-CQ-5326 TCGA-CQ-6223 TCGA-CQ-6224 
       17.29        11.44        48.20         2.93        34.75        32.38 
TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7064 TCGA-CQ-7069 TCGA-CQ-A4C7 TCGA-CR-6474 
       13.25        14.99        45.30        29.62        11.61        18.54 
TCGA-CR-6484 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       11.64        39.16        47.34        40.93        35.84         3.45 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 
       24.95        29.23        19.92        26.17        17.13        47.01 
TCGA-CR-7389 TCGA-CR-7398 TCGA-CV-5435 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5977 
       12.89         5.13        47.28        80.12        17.06        60.49 
TCGA-CV-5979 TCGA-CV-6936 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6950 
       43.23         5.46        26.43        11.24       126.08        15.09 
TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7097 
        6.08        65.82         2.50         4.14       126.15        12.66 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7242 TCGA-CV-7243 
        9.01         5.26         1.84        71.21        36.00        31.36 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7263 TCGA-CV-7406 
       26.20        18.97        17.13         4.96        18.41        57.47 
TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7432 
        0.46        25.94       100.57        14.89        54.94        84.49 
TCGA-CV-7434 TCGA-CV-7438 TCGA-CV-A6JD TCGA-CX-7219 TCGA-D6-6517 TCGA-D6-6823 
        7.17         6.38         5.98        27.22         9.60        23.05 
TCGA-D6-6826 TCGA-D6-A4ZB TCGA-DQ-5629 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 
        5.06         3.42        16.96        18.02        14.04        25.48 
TCGA-DQ-7593 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A61V TCGA-F7-A620 
       12.13        21.63         0.49         3.02        12.62         0.43 
TCGA-HD-8635 TCGA-HD-A633 TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K 
        0.82         1.61        11.84        13.55        14.47         5.29 
TCGA-KU-A66T TCGA-MT-A51X TCGA-MZ-A6I9 TCGA-P3-A6SX TCGA-P3-A6T2 TCGA-P3-A6T3 
        6.90         1.12         8.35        47.01        63.02        18.97 
TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T8 TCGA-QK-A64Z 
        2.04        29.00        13.15        18.18 

$`10P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 
       15.19        13.64        37.28         8.15        23.74        57.93 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6869 TCGA-BA-6871 
       17.10        23.84        20.48        53.79        21.17         2.07 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       12.62         7.76        11.54         7.10         5.69         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.82         6.15        94.62         9.14         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.35        10.19        17.62        13.91        22.59        20.98 
TCGA-BB-7871 TCGA-BB-8596 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4726 TCGA-CN-4727 
       14.07        71.05         0.13        26.27         4.67        14.86 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       20.15        12.89        15.19        32.65        21.11        21.11 
TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.99        14.33        34.68        26.66        41.69        13.05 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       16.83         5.69        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6016 
       12.49         8.52        22.45        14.73        14.24        10.39 
TCGA-CN-6017 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6992 
       20.68         9.07         6.64        13.94        20.09        12.95 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63V 
        3.91         3.68        13.08        14.70         7.40        15.91 
TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 
        5.75        12.07         2.70        39.68        21.50        54.58 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       46.75        29.46        45.99        10.42        11.21         4.24 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 
       28.60        32.38        32.88         4.24        26.79        48.03 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C9 
       33.11        16.73        43.04        28.83        31.82        20.15 
TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI 
       17.92        18.02        12.92        12.85         9.96        19.99 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.67        37.87        26.27        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        34.52        36.99        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       11.90        10.22        11.34         7.69        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7376 
       15.75         9.27        47.18         3.09         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7385 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 
        9.17        34.06        32.78        27.06        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 
       31.10        29.85        29.52        30.58         7.10         5.95 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.95        48.39       139.43        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
      108.33        19.20        17.95       107.51        94.88        76.50 
TCGA-CV-5443 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 
       91.53        13.35        23.05        86.83        48.59         7.07 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       54.74        21.07        62.43         9.60        90.12         2.14 
TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6943 TCGA-CV-6945 
        9.70        20.52         4.73        21.90        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
       42.38        30.08        53.95        10.98         7.13         8.42 
TCGA-CV-6960 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7103 
       28.34        64.83       111.16        18.81         7.99        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       12.92        21.80        10.75       114.97        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       47.47        95.34        11.87        47.97         2.10        36.13 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 
       35.54        17.85       210.97        89.33         9.67        22.85 
TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 
       25.08         0.07        34.09        56.48       156.49         3.52 
TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A45O 
       16.27        19.76       142.52        16.64        22.19        27.98 
TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
      169.38        67.86        24.66        10.42        10.55         7.79 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 
       13.25        25.41         2.53        16.14        18.67         3.48 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-7589 
        4.21         3.68        58.45        35.54        33.86        18.90 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 
       20.45         9.83        12.10        10.65        11.18        18.54 
TCGA-F7-8298 TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61W TCGA-F7-A623 TCGA-H7-7774 
       16.11        19.23         0.10         0.46         0.20        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        1.91         4.37         0.07         0.16         0.82         1.22 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-A4C1 TCGA-HD-A634 TCGA-HD-A6I0 
        1.81         1.45         0.79         0.36         0.33         1.08 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61I 
       34.75        15.95         4.01        14.50        19.33         0.07 
TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67D 
       11.54        11.84         7.36         0.46        12.89         1.84 
TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE 
        3.65         3.68        29.92        15.78        54.31        23.70 
TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6T0 TCGA-P3-A6T6 TCGA-P3-A6T7 
       10.85        36.82        19.00        12.99        16.01 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              0.16               0.07 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            126.15             210.97 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             15.04              16.64 
[1] "0.2 - 126.2 (15.0)" "0.1 - 211.0 (16.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
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"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
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        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
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        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
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        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
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  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
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        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
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        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
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        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
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        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
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        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
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        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
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        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
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        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
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        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
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        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
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        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
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  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
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  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
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  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
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  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
[1] "hr=" "1.5"
D59V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  10P LOSS MUTATED         5       18        18        68         2
  10P LOSS WILD-TYPE      19       44        48       121         6
D59V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  10P LOSS MUTATED    8 32 23 48
  10P LOSS WILD-TYPE 31 71 61 80
D59V4, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  T1                8                 31
  T2               32                 71
  T3               23                 61
  T4               48                 80
                    vv
clus                 N0 N1 N2 N3
  10P LOSS MUTATED   37 19 44  1
  10P LOSS WILD-TYPE 97 33 81  6
D59V5, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  N0               37                 97
  N1               19                 33
  N2               44                 81
  N3                1                  6
D59V6, binary
                    cls
clus                  0  1
  10P LOSS MUTATED   32 16
  10P LOSS WILD-TYPE 71 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     32   16
  10P LOSS WILD-TYPE   71   27
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  M0               32                 71
  MX               16                 27
D59V7, binary
                    cls
clus                   0   1
  10P LOSS MUTATED    30  95
  10P LOSS WILD-TYPE  86 193
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     30   95
  10P LOSS WILD-TYPE   86  193
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE               30                 86
  MALE                 95                193
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  10P LOSS MUTATED                                     125
  10P LOSS WILD-TYPE                                   272
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  10P LOSS MUTATED                                                             0
  10P LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  10P LOSS MUTATED                                                     0
  10P LOSS WILD-TYPE                                                   6
D59V8, multiclass
                                                             clus
vv                                                            10P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    125
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            10P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      272
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D59V9, binary
                    cls
clus                   0   1
  10P LOSS MUTATED    28  97
  10P LOSS WILD-TYPE  51 228
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     28   97
  10P LOSS WILD-TYPE   51  228
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                28                 51
  YES               97                228
D59V10, continuous
D59V11, continuous
D59V12, continuous

Clustering(60) Variable = 10Q LOSS MUTATION ANALYSIS
D60V1, survival
                    sevent
clus2                  0   1
  10Q LOSS MUTATED    47  37
  10Q LOSS WILD-TYPE 200 115
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                84                315 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                37                115 
$`10Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4078 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5559 
       15.19         9.30         9.07        42.35        17.10        57.44 
TCGA-BA-A6D8 TCGA-BB-7870 TCGA-BB-8601 TCGA-C9-A47Z TCGA-CN-4725 TCGA-CN-5355 
       16.87        37.91        20.52         0.16        15.95        16.04 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6018 TCGA-CN-6019 
       12.39        35.54         9.53        20.68         1.48        12.85 
TCGA-CN-6020 TCGA-CN-6024 TCGA-CN-6998 TCGA-CN-A63U TCGA-CQ-5332 TCGA-CQ-6224 
        3.22         7.36         1.51        17.29        10.42        32.38 
TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7064 TCGA-CR-6470 TCGA-CR-6474 TCGA-CR-6477 
       13.25        14.99        45.30        50.01        18.54        16.90 
TCGA-CR-6484 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7372 
       11.64        39.16        40.93        35.84         3.45        24.95 
TCGA-CR-7373 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7398 TCGA-CV-5431 
       29.23        17.13        47.01        12.89         5.13        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6936 
      129.21       108.33        47.28        60.49        43.23         5.46 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7090 
       26.43        11.24        15.09         2.50         4.14       126.15 
TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7263 
       12.66         5.26        36.00        26.20        17.13        18.41 
TCGA-CV-7406 TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7432 
       57.47         0.46        25.94       100.57        14.89        84.49 
TCGA-CV-7438 TCGA-D6-6823 TCGA-D6-A4ZB TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
        6.38        23.05         3.42        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7593 TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K 
       25.48        12.13        11.84        13.55        14.47         5.29 
TCGA-KU-A66T TCGA-MT-A51X TCGA-MZ-A6I9 TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T5 
        6.90         1.12         8.35        19.00        63.02        29.00 

$`10Q LOSS WILD-TYPE`
TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5556 
       13.64        37.28         8.15        23.74        57.93        23.84 
TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       20.48        53.79         6.25        21.17        14.83         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6DA TCGA-BA-A6DB 
       12.62         3.72         7.76        29.42        11.54         7.10 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
        5.69         5.98         7.82         6.15        94.62         9.14 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        4.60         4.37        18.35        10.19        17.62        13.91 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-C9-A480 
       22.59        20.98        14.07        14.33        71.05         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       26.27        23.70         4.67        14.86        20.15        12.89 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       15.19        32.65        21.11        21.11        12.99        17.79 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 
       14.33        34.68        26.66        41.69        13.05        16.83 
TCGA-CN-5358 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
        5.69         8.32        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 
       12.49         8.52        22.45        14.73        13.94        14.24 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 
       10.39        20.68         9.07         6.64        13.94        10.45 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
       20.09        12.95         3.91         3.68        14.20        13.08 
TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 
       14.70         7.40        15.91        11.44         5.75        12.07 
TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        2.70        48.20        39.68        21.50         2.93        54.58 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       46.75        29.46        45.99        11.21         4.24        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 
       32.38        32.88        34.75         4.24        26.79        48.03 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 
       33.11        16.73        43.04        29.62        28.83        31.82 
TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG 
       11.61        20.15        17.92        18.02        12.92        12.85 
TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
        9.96        19.99        84.23        11.77        54.67        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 
       26.27        58.42        39.52        34.52        36.99         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       11.90        10.22        11.34         7.69        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7371 TCGA-CR-7374 
       15.75         9.27        47.18        47.34         3.09         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 
       31.96         9.17        34.06        19.92        26.17        32.78 
TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.06        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       30.58         7.10         5.95        35.41        29.95        48.39 
TCGA-CV-5430 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
      139.43        19.20        17.95       107.51        94.88        76.50 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       91.53        80.12        17.06        13.35        23.05        86.83 
TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       48.59         7.07        54.74        21.07        62.43         9.60 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
       90.12         2.14         9.70        20.52         4.73        21.90 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 
      126.08        19.79        12.03        42.38        30.08         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.95        65.82        10.98         7.13         8.42        28.34 
TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 
       64.83       111.16        18.81         7.99         9.01         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.92        21.80        71.21        10.75       114.97 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7250 
       56.68         4.73        47.47        31.36        18.97        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7407 
        4.96        11.87        47.97         2.10        36.13        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 
       17.85       210.97        89.33         9.67        22.85        25.08 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
        0.07        34.09        56.48       156.49        54.94         3.52 
TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 
       16.27        19.76         7.17       142.52        16.64        22.19 
TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 
       27.98       169.38        67.86         5.98        24.66        10.42 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.79        27.22        13.25        25.41         9.60 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53        16.14         5.06        18.67         3.48         4.21 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7591 
        3.68        58.45        35.54        16.96        33.86        20.45 
TCGA-DQ-7592 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.10        10.65        11.18        18.54        16.11 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V 
       21.63         0.49         3.02        19.23         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        0.46         0.43         0.20        13.38         1.91         4.37 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.22         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 
        0.79         0.82         0.36         1.61         0.33         1.08 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61I 
       34.75        15.95         4.01        14.50        19.33         0.07 
TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67D 
       11.54        11.84         7.36         0.46        12.89         1.84 
TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE 
        3.65         3.68        29.92        15.78        54.31        23.70 
TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T6 
       10.85        36.82        47.01        18.97         2.04        12.99 
TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       16.01        13.15        18.18 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              0.16               0.07 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            129.21             210.97 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             17.00              16.01 
[1] "0.2 - 129.2 (17.0)" "0.1 - 211.0 (16.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
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        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D60V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  10Q LOSS MUTATED         3       14        11        45         0
  10Q LOSS WILD-TYPE      21       48        55       144         8
D60V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10Q LOSS MUTATED     5  23  18  27
  10Q LOSS WILD-TYPE  34  80  66 101
D60V4, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  T1                5                 34
  T2               23                 80
  T3               18                 66
  T4               27                101
                    vv
clus                  N0  N1  N2  N3
  10Q LOSS MUTATED    27   7  32   0
  10Q LOSS WILD-TYPE 107  45  93   7
D60V5, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  N0               27                107
  N1                7                 45
  N2               32                 93
  N3                0                  7
D60V6, binary
                    cls
clus                  0  1
  10Q LOSS MUTATED   24  8
  10Q LOSS WILD-TYPE 79 35
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     24    8
  10Q LOSS WILD-TYPE   79   35
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  M0               24                 79
  MX                8                 35
D60V7, binary
                    cls
clus                   0   1
  10Q LOSS MUTATED    18  66
  10Q LOSS WILD-TYPE  98 222
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     18   66
  10Q LOSS WILD-TYPE   98  222
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE               18                 98
  MALE                 66                222
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  10Q LOSS MUTATED                                      84
  10Q LOSS WILD-TYPE                                   313
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  10Q LOSS MUTATED                                                             0
  10Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  10Q LOSS MUTATED                                                     0
  10Q LOSS WILD-TYPE                                                   6
D60V8, multiclass
                                                             clus
vv                                                            10Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     84
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            10Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      313
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D60V9, binary
                    cls
clus                   0   1
  10Q LOSS MUTATED    21  63
  10Q LOSS WILD-TYPE  58 262
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     21   63
  10Q LOSS WILD-TYPE   58  262
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                21                 58
  YES               63                262
D60V10, continuous
D60V11, continuous
D60V12, continuous

Clustering(61) Variable = 11P LOSS MUTATION ANALYSIS
D61V1, survival
                    sevent
clus2                  0   1
  11P LOSS MUTATED    61  43
  11P LOSS WILD-TYPE 186 109
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               104                295 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                43                109 
$`11P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       15.19         9.07         2.07        12.62         3.72         7.76 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BB-4227 TCGA-BB-7870 TCGA-BB-8596 TCGA-CN-4728 
        5.69         5.98         4.37        37.91        71.05        20.15 
TCGA-CN-4729 TCGA-CN-4735 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5356 TCGA-CN-5359 
       12.89        21.11        34.68        26.66        16.83        12.39 
TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 
        8.32        11.54        11.84         9.53        13.94        20.68 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 
        3.22         9.07        10.45        20.09        12.95         3.68 
TCGA-CN-6998 TCGA-CN-A63U TCGA-CN-A63Y TCGA-CQ-5332 TCGA-CQ-6227 TCGA-CQ-6228 
        1.51        17.29         5.75        10.42         4.24        14.99 
TCGA-CQ-A4CB TCGA-CQ-A4CI TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-6477 TCGA-CR-6478 
       17.92        19.99        11.77        54.67        16.90         6.02 
TCGA-CR-6481 TCGA-CR-7370 TCGA-CR-7374 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7388 
       10.22         3.45         0.99        17.13        32.78        27.06 
TCGA-CR-7399 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5439 TCGA-CV-5977 
        5.95        48.39        17.16       129.21        17.95        60.49 
TCGA-CV-5978 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6936 TCGA-CV-6940 TCGA-CV-6942 
        7.07         9.60        90.12         5.46        26.43       126.08 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7101 
       12.03        42.38       111.16        18.81        12.66         5.26 
TCGA-CV-7102 TCGA-CV-7235 TCGA-CV-7245 TCGA-CV-7253 TCGA-CV-7263 TCGA-CV-7415 
        1.84        56.68        26.20        11.87        18.41        22.85 
TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7435 TCGA-CX-7082 
        0.07       100.57        16.27        19.76       142.52        10.42 
TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-7589 
        3.48         3.68         3.42        58.45        16.96        18.90 
TCGA-DQ-7594 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-A50I TCGA-F7-A623 
       12.10        11.18        18.54        16.11         3.02         0.20 
TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8635 TCGA-IQ-A61G TCGA-IQ-A61J TCGA-KU-A66T 
        0.16         1.22         0.82        11.84        14.47         6.90 
TCGA-MT-A51W TCGA-MT-A67D TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q6 TCGA-P3-A6SW 
        0.46         1.84         3.68         8.35        15.78        36.82 
TCGA-P3-A6T4 TCGA-P3-A6T8 
        2.04        13.15 

$`11P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         8.15        23.74        42.35 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.93        17.10        23.84        20.48        53.79        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA 
        6.25        21.17        14.83        29.42        16.87        11.54 
TCGA-BA-A6DB TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        7.10         7.82         6.15        94.62         9.14         4.60 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.35        10.19        17.62        13.91        22.59        20.98 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       14.07        14.33        20.52         0.16         0.13        26.27 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4731 
       23.70        15.95         4.67        14.86        15.19        32.65 
TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4741 TCGA-CN-4742 
       21.11        12.99        17.79        14.33        41.69        13.05 
TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5367 TCGA-CN-5369 
       16.04         5.69        35.54        16.21        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        8.52        22.45        14.73        14.24        10.39        20.68 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6994 
        1.48        12.85         6.64        13.94         7.36         3.91 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63V TCGA-CN-A63W 
       14.20        13.08        14.70         7.40        15.91        11.44 
TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
       12.07         2.70        48.20        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 
       54.58        46.75        29.46        45.99        11.21         4.24 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.38        32.88        34.75        32.38        13.25 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
       26.79        48.03        45.30        33.11        16.73        43.04 
TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CD 
       29.62        28.83        31.82        11.61        20.15        18.02 
TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CR-5243 TCGA-CR-5249 TCGA-CR-5250 
       12.92        12.85         9.96        84.23        37.87        26.27 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.54 
TCGA-CR-6480 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       11.90        11.34        11.64         7.69        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.16        47.34        40.93 
TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 
       35.84         3.09        24.95        29.23        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7390 
       34.06        19.92        26.17        47.01        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.58         7.10 
TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5434 TCGA-CV-5435 
        5.13        35.41        29.95       139.43       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       19.20       107.51        94.88        76.50        91.53        80.12 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5979 
       17.06        13.35        23.05        86.83        48.59        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 
       54.74        21.07        62.43         2.14         9.70        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 
        4.73        21.90        11.24        19.79        15.09        30.08 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.95        65.82        10.98         7.13         8.42 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7099 
       28.34         2.50         4.14        64.83       126.15         7.99 
TCGA-CV-7100 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        9.01        52.31        12.92        21.80        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 
      114.97         4.73        47.47        36.00        31.36        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       17.13        95.34         4.96        47.97         2.10        36.13 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       57.47        35.54        17.85       210.97        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 
        0.46        25.08        25.94        34.09        14.89        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-7437 
      156.49        54.94         3.52        84.49         7.17        16.64 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD 
        6.38        22.19        27.98       169.38        67.86         5.98 
TCGA-CV-A6JE TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       24.66        10.55         7.79        27.22        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        9.60        23.05         2.53        16.14         5.06        18.67 
TCGA-D6-8569 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 
        4.21        35.54        33.86        18.02        14.04        25.48 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7595 TCGA-F7-8489 TCGA-F7-A50G 
       20.45         9.83        12.13        10.65        21.63         0.49 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 
       19.23         0.10        12.62         0.46         0.43        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 
        1.91         4.37         0.07         0.82         1.81         1.45 
TCGA-HD-8634 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 
        0.79         0.36         1.61         0.33         1.08        34.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61H TCGA-IQ-A61I 
       15.95         4.01        14.50        19.33        13.55         0.07 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51X TCGA-MT-A67A 
        5.29        11.54        11.84         7.36         1.12        12.89 
TCGA-MT-A67F TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SX 
        3.65        29.92        54.31        23.70        10.85        47.01 
TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 
       19.00        63.02        18.97        29.00        12.99        16.01 
TCGA-QK-A64Z 
       18.18 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.07               0.07 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            142.52             210.97 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            12.505             18.020 
[1] "0.1 - 142.5 (12.5)" "0.1 - 211.0 (18.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D61V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  11P LOSS MUTATED         5       12        14        49         5
  11P LOSS WILD-TYPE      19       50        52       140         3
D61V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  11P LOSS MUTATED   11 24 21 30
  11P LOSS WILD-TYPE 28 79 63 98
D61V4, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  T1               11                 28
  T2               24                 79
  T3               21                 63
  T4               30                 98
                    vv
clus                  N0  N1  N2  N3
  11P LOSS MUTATED    27  10  36   5
  11P LOSS WILD-TYPE 107  42  89   2
D61V5, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  N0               27                107
  N1               10                 42
  N2               36                 89
  N3                5                  2
D61V6, binary
                    cls
clus                  0  1
  11P LOSS MUTATED   24 11
  11P LOSS WILD-TYPE 79 32
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     24   11
  11P LOSS WILD-TYPE   79   32
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  M0               24                 79
  MX               11                 32
D61V7, binary
                    cls
clus                   0   1
  11P LOSS MUTATED    25  80
  11P LOSS WILD-TYPE  91 208
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     25   80
  11P LOSS WILD-TYPE   91  208
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE               25                 91
  MALE                 80                208
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  11P LOSS MUTATED                                     103
  11P LOSS WILD-TYPE                                   294
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  11P LOSS MUTATED                                                             0
  11P LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  11P LOSS MUTATED                                                     2
  11P LOSS WILD-TYPE                                                   4
D61V8, multiclass
                                                             clus
vv                                                            11P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    103
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        2
                                                             clus
vv                                                            11P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      294
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D61V9, binary
                    cls
clus                   0   1
  11P LOSS MUTATED    22  83
  11P LOSS WILD-TYPE  57 242
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     22   83
  11P LOSS WILD-TYPE   57  242
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                22                 57
  YES               83                242
D61V10, continuous
D61V11, continuous
D61V12, continuous

Clustering(62) Variable = 11Q LOSS MUTATION ANALYSIS
D62V1, survival
                    sevent
clus2                  0   1
  11Q LOSS MUTATED    78  51
  11Q LOSS WILD-TYPE 169 101
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               129                270 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                51                101 
$`11Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-6868 
       15.19        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BB-7866 
       12.62         3.72         7.76        11.54         5.69        20.98 
TCGA-BB-7870 TCGA-BB-8596 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4735 
       37.91        71.05        14.86        20.15        12.89        21.11 
TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5365 
       34.68        41.69        12.39        35.54         8.32        11.54 
TCGA-CN-5366 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6020 
       11.84         9.53        13.94        20.68        14.24         3.22 
TCGA-CN-6021 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6998 TCGA-CN-A49B 
        9.07        20.09        12.95         3.68         1.51        14.70 
TCGA-CN-A63T TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5332 TCGA-CQ-6221 
        7.40         5.75        12.07        48.20        10.42        32.88 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-A4CB TCGA-CR-5243 
       32.38         4.24        14.99        26.79        17.92        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-6470 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6481 
       54.67        37.87        50.01        16.90         6.02        10.22 
TCGA-CR-6487 TCGA-CR-7370 TCGA-CR-7374 TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7388 
        7.69         3.45         0.99         9.17        19.92        27.06 
TCGA-CR-7399 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5439 TCGA-CV-5441 
        5.95        48.39        17.16       129.21        17.95        94.88 
TCGA-CV-5970 TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 
       13.35        60.49        21.07         9.60        90.12         9.70 
TCGA-CV-6936 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6945 TCGA-CV-6961 
        5.46        21.90        26.43       126.08        12.03         2.50 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7235 
      111.16        18.81        12.66         5.26         1.84        56.68 
TCGA-CV-7247 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7421 
       18.97        18.41        57.47         0.46        22.85         0.07 
TCGA-CV-7422 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-A6JE TCGA-CX-7082 TCGA-D6-6825 
       34.09        19.76       142.52        24.66        10.42        16.14 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7593 
        3.68        58.45        14.04        18.90        25.48        12.13 
TCGA-DQ-7594 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-A50G TCGA-F7-A50I 
       12.10        11.18        18.54        16.11         0.49         3.02 
TCGA-F7-A623 TCGA-H7-8502 TCGA-HD-7753 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-A61G 
        0.20         4.37         0.16         1.45        34.75        11.84 
TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61L TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X 
       13.55        14.47        11.54         6.90         0.46         1.12 
TCGA-MT-A67D TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX 
        1.84         3.68         8.35        10.85        36.82        47.01 
TCGA-P3-A6T4 TCGA-P3-A6T7 TCGA-P3-A6T8 
        2.04        16.01        13.15 

$`11Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 
        9.30        23.74        42.35        57.93        17.10        23.84 
TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       20.48        53.79        57.44        21.17        14.83         2.07 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DB TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 
       29.42        16.87         7.10         5.98         7.82         6.15 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
       94.62         9.14         4.60         4.37        18.35        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8601 
       17.62        13.91        22.59        14.07        14.33        20.52 
TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        0.16         0.13        26.27        23.70        15.95         4.67 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       15.19        32.65        21.11        12.99        17.79        14.33 
TCGA-CN-4740 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5364 
       26.66        13.05        16.04        16.83         5.69        16.21 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6016 
       11.57        12.49         8.52        22.45        14.73        10.39 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
       20.68         1.48        12.85         6.64        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-A63U TCGA-CN-A63V 
       10.45         3.91        14.20        13.08        17.29        15.91 
TCGA-CN-A63W TCGA-CN-A642 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
       11.44         2.70        39.68        21.50         2.93        54.58 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       46.75        29.46        45.99        11.21         4.24        28.60 
TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
       32.38        34.75        13.25        48.03        45.30        33.11 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 
       16.73        43.04        29.62        28.83        31.82        11.61 
TCGA-CQ-A4C9 TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI 
       20.15        18.02        12.92        12.85         9.96        19.99 
TCGA-CR-5247 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       11.77        26.27        58.42        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6480 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 
       18.54        11.90        11.34        11.64        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.16        47.34        40.93 
TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 
       35.84         3.09        24.95        29.23        31.96        34.06 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7390 
       26.17        17.13        32.78        47.01        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.58         7.10 
TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5434 TCGA-CV-5435 
        5.13        35.41        29.95       139.43       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       19.20       107.51        76.50        91.53        80.12        17.06 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       23.05        86.83        48.59         7.07        43.23        54.74 
TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6941 TCGA-CV-6943 
       62.43         2.14        20.52         4.73        11.24        19.79 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.38        15.09        30.08         6.08        53.95        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 
       10.98         7.13         8.42        28.34         4.14        64.83 
TCGA-CV-7090 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
      126.15         7.99         9.01        52.31        12.92        21.80 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       71.21        10.75       114.97         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       31.36        26.20        17.13        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       47.97         2.10        36.13        35.54        17.85       210.97 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7423 TCGA-CV-7424 
       89.33         9.67        25.08        25.94       100.57        14.89 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.94         3.52        16.27        84.49 
TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q 
        7.17        16.64         6.38        22.19        27.98       169.38 
TCGA-CV-A461 TCGA-CV-A6JD TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       67.86         5.98        10.55         7.79        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 
       25.41         9.60        23.05         2.53         5.06        18.67 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4ZB TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        3.48         4.21         3.42        35.54        16.96        33.86 
TCGA-DQ-5631 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7595 TCGA-F7-8489 TCGA-F7-A50J 
       18.02        20.45         9.83        10.65        21.63        19.23 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 
        0.10        12.62         0.46         0.43        13.38         1.91 
TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8634 TCGA-HD-8635 
        0.07         0.82         1.22         1.81         0.79         0.82 
TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-IQ-7630 TCGA-IQ-7631 
        0.36         1.61         0.33         1.08        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61I TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66S 
       14.50        19.33         0.07         5.29        11.84         7.36 
TCGA-MT-A67A TCGA-MT-A67F TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE 
       12.89         3.65        29.92        15.78        54.31        23.70 
TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-QK-A64Z 
       19.00        63.02        18.97        29.00        12.99        18.18 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              0.07               0.07 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            142.52             210.97 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            13.550             17.455 
[1] "0.1 - 142.5 (13.6)" "0.1 - 211.0 (17.5)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D62V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  11Q LOSS MUTATED         7       16        15        61         4
  11Q LOSS WILD-TYPE      17       46        51       128         4
D62V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  11Q LOSS MUTATED   13 29 25 37
  11Q LOSS WILD-TYPE 26 74 59 91
D62V4, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  T1               13                 26
  T2               29                 74
  T3               25                 59
  T4               37                 91
                    vv
clus                  N0  N1  N2  N3
  11Q LOSS MUTATED    34  13  47   3
  11Q LOSS WILD-TYPE 100  39  78   4
D62V5, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  N0               34                100
  N1               13                 39
  N2               47                 78
  N3                3                  4
D62V6, binary
                    cls
clus                  0  1
  11Q LOSS MUTATED   28 16
  11Q LOSS WILD-TYPE 75 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     28   16
  11Q LOSS WILD-TYPE   75   27
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  M0               28                 75
  MX               16                 27
D62V7, binary
                    cls
clus                   0   1
  11Q LOSS MUTATED    24 105
  11Q LOSS WILD-TYPE  92 183
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     24  105
  11Q LOSS WILD-TYPE   92  183
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE               24                 92
  MALE                105                183
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  11Q LOSS MUTATED                                     127
  11Q LOSS WILD-TYPE                                   270
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  11Q LOSS MUTATED                                                             0
  11Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  11Q LOSS MUTATED                                                     2
  11Q LOSS WILD-TYPE                                                   4
D62V8, multiclass
                                                             clus
vv                                                            11Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    127
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        2
                                                             clus
vv                                                            11Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      270
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D62V9, binary
                    cls
clus                   0   1
  11Q LOSS MUTATED    31  98
  11Q LOSS WILD-TYPE  48 227
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     31   98
  11Q LOSS WILD-TYPE   48  227
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                31                 48
  YES               98                227
D62V10, continuous
D62V11, continuous
D62V12, continuous

Clustering(63) Variable = 12P LOSS MUTATION ANALYSIS
D63V1, survival
                    sevent
clus2                  0   1
  12P LOSS MUTATED    12  15
  12P LOSS WILD-TYPE 235 137
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                27                372 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                15                137 
$`12P LOSS MUTATED`
TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-6868 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       37.28         8.15         6.25        12.62         3.72         7.76 
TCGA-BA-A6DA TCGA-BA-A6DE TCGA-BB-8596 TCGA-CN-5355 TCGA-CN-5365 TCGA-CN-5374 
       11.54         5.98        71.05        16.04        11.54         9.53 
TCGA-CR-6484 TCGA-CR-7377 TCGA-CR-7389 TCGA-CV-6441 TCGA-CV-7090 TCGA-CV-7100 
       11.64         9.17        12.89         9.60       126.15         9.01 
TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7432 TCGA-D6-6826 TCGA-DQ-5631 TCGA-HD-8224 
        2.10        18.41        84.49         5.06        18.02         1.81 
TCGA-IQ-A61E TCGA-MZ-A6I9 TCGA-P3-A6T5 
       19.33         8.35        29.00 

$`12P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 
       15.19         9.30        13.64         9.07        23.74        42.35 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.93        17.10        23.84        20.48        53.79        57.44 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DB 
       21.17        14.83         2.07        29.42        16.87         7.10 
TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.69         7.82         6.15        94.62         9.14         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.35        10.19        17.62        13.91        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8601 TCGA-C9-A47Z 
       20.98        37.91        14.07        14.33        20.52         0.16 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
        0.13        26.27        23.70        15.95         4.67        14.86 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       20.15        12.89        15.19        32.65        21.11        21.11 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99        17.79        14.33        34.68        26.66        41.69 
TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
       13.05        16.83         5.69        12.39        35.54         8.32 
TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       16.21        11.84        11.57        12.49         8.52        22.45 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       14.73        13.94        20.68        14.24        10.39        20.68 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48        12.85         3.22         9.07         6.64        13.94 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36        10.45        20.09        12.95         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U 
       14.20        13.08         1.51        14.70         7.40        17.29 
TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 
       15.91        11.44         5.75        12.07         2.70        48.20 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        54.58        46.75        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       45.99        10.42        11.21         4.24        28.60        32.38 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.38        13.25         4.24        14.99 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
       26.79        48.03        45.30        33.11        16.73        43.04 
TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB 
       29.62        28.83        31.82        11.61        20.15        17.92 
TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 
       18.02        12.92        12.85         9.96        19.99        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.67        37.87        26.27        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.54        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       11.90        10.22        11.34         7.69        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.16        47.34        40.93 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.45         3.09        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.06        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.58         7.10         5.13         5.95        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.95        48.39       139.43        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95       107.51        94.88        76.50 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       91.53        80.12        17.06        13.35        23.05        86.83 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        60.49         7.07        43.23        54.74        21.07 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       62.43        90.12         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.73        21.90        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.38        15.09        30.08         6.08        53.95 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.42        28.34         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
        4.14        64.83       111.16        18.81        12.66         7.99 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.26         1.84        52.31        12.92        21.80        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.97        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.36        26.20        18.97        17.13        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
       11.87        47.97        36.13        57.47        35.54        17.85 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.97        89.33         9.67         0.46        22.85        25.08 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.57        14.89        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 
      156.49        54.94         3.52        16.27        19.76         7.17 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q 
      142.52        16.64         6.38        22.19        27.98       169.38 
TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       67.86         5.98        24.66        10.42        10.55         7.79 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        25.41         9.60        23.05         2.53 
TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
       16.14        18.67         3.48         4.21         3.68         3.42 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 
       58.45        35.54        16.96        33.86        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       25.48        20.45         9.83        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I 
       11.18        18.54        16.11        21.63         0.49         3.02 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 
       19.23         0.10        12.62         0.46         0.43         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
       13.38         1.91         4.37         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 
        1.22         1.45         0.79         0.82         0.36         1.61 
TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.33         1.08        34.75        15.95         4.01        14.50 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L 
       11.84        13.55         0.07        14.47         5.29        11.54 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
       11.84         7.36         6.90         0.46         1.12        12.89 
TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA 
        1.84         3.65         3.68        29.92        15.78        54.31 
TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 
       23.70        10.85        36.82        47.01        19.00        63.02 
TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       18.97         2.04        12.99        16.01        13.15        18.18 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              1.81               0.07 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
            126.15             210.97 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             11.54              16.85 
[1] "1.8 - 126.2 (11.5)" "0.1 - 211.0 (16.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "12P LOSS MUTATED"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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  "12P LOSS MUTATED"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D63V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  12P LOSS MUTATED         0        4         4        13         1
  12P LOSS WILD-TYPE      24       58        62       176         7
D63V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12P LOSS MUTATED     0   8   4  10
  12P LOSS WILD-TYPE  39  95  80 118
D63V4, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  T1                0                 39
  T2                8                 95
  T3                4                 80
  T4               10                118
                    vv
clus                  N0  N1  N2  N3
  12P LOSS MUTATED     8   2   8   1
  12P LOSS WILD-TYPE 126  50 117   6
D63V5, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  N0                8                126
  N1                2                 50
  N2                8                117
  N3                1                  6
D63V6, binary
                    cls
clus                  0  1
  12P LOSS MUTATED    7  3
  12P LOSS WILD-TYPE 96 40
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      7    3
  12P LOSS WILD-TYPE   96   40
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  M0                7                 96
  MX                3                 40
D63V7, binary
                    cls
clus                   0   1
  12P LOSS MUTATED    10  17
  12P LOSS WILD-TYPE 106 271
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED     10   17
  12P LOSS WILD-TYPE  106  271
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE               10                106
  MALE                 17                271
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  12P LOSS MUTATED                                      27
  12P LOSS WILD-TYPE                                   370
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  12P LOSS MUTATED                                                             0
  12P LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  12P LOSS MUTATED                                                     0
  12P LOSS WILD-TYPE                                                   6
D63V8, multiclass
                                                             clus
vv                                                            12P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     27
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            12P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      370
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D63V9, binary
                    cls
clus                   0   1
  12P LOSS MUTATED     6  21
  12P LOSS WILD-TYPE  73 304
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      6   21
  12P LOSS WILD-TYPE   73  304
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 6                 73
  YES               21                304
D63V10, continuous
D63V11, continuous
D63V12, continuous

Clustering(64) Variable = 12Q LOSS MUTATION ANALYSIS
D64V1, survival
                    sevent
clus2                  0   1
  12Q LOSS MUTATED    15   8
  12Q LOSS WILD-TYPE 232 144
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                23                376 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 8                144 
$`12Q LOSS MUTATED`
TCGA-BA-6868 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6DE TCGA-BB-8596 TCGA-CN-5355 
        6.25         3.72         7.76         5.98        71.05        16.04 
TCGA-CN-5374 TCGA-CN-6024 TCGA-CN-6994 TCGA-CR-6493 TCGA-CR-7390 TCGA-CV-6003 
        9.53         7.36         3.91         9.27        29.82        54.74 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7432 
      126.15       111.16        47.97         2.10        18.41        84.49 
TCGA-CX-7219 TCGA-F7-7848 TCGA-IQ-A61G TCGA-MZ-A6I9 TCGA-P3-A6T5 
       27.22        18.54        11.84         8.35        29.00 

$`12Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.35        57.93        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       53.79        57.44        21.17        14.83         2.07        12.62 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DF 
       29.42        16.87        11.54         7.10         5.69         7.82 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.15        94.62         9.14         4.60         4.37        18.35 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.62        13.91        22.59        20.98        37.91 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       14.07        14.33        20.52         0.16         0.13        26.27 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       23.70        15.95         4.67        14.86        20.15        12.89 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       15.19        32.65        21.11        21.11        12.99        17.79 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 
       14.33        34.68        26.66        41.69        13.05        16.83 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        35.54         8.32        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 
       11.84        11.57        12.49         8.52        22.45        14.73 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       13.94        20.68        14.24        10.39        20.68         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 
       12.85         3.22         9.07         6.64        13.94        10.45 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
       20.09        12.95         3.68        14.20        13.08         1.51 
TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y 
       14.70         7.40        17.29        15.91        11.44         5.75 
TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
       12.07         2.70        48.20        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       54.58        46.75        29.46        45.99        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.24        28.60        32.38        32.88        34.75        32.38 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.24        14.99        26.79        48.03        45.30 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 
       33.11        16.73        43.04        29.62        28.83        31.82 
TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG 
       11.61        20.15        17.92        18.02        12.92        12.85 
TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
        9.96        19.99        84.23        11.77        54.67        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.27        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.54        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 
       11.64         7.69        12.46        11.51        15.75        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.16        47.34        40.93        35.84         3.45         3.09 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.06 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.58 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.95        35.41        29.95        48.39 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      139.43        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95       107.51        94.88        76.50        91.53        80.12 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        23.05        86.83        48.59        60.49 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
        7.07        43.23        21.07        62.43         9.60        90.12 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.73        21.90 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.38 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.09        30.08         6.08        53.95        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.42        28.34         2.50         4.14        64.83 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.26         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.92        21.80        71.21        10.75       114.97 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.36        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7261 
       18.97        17.13        95.34         4.96        11.87        36.13 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       57.47        35.54        17.85       210.97        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.08        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.57        14.89        56.48       156.49        54.94         3.52 
TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       16.27        19.76         7.17       142.52        16.64         6.38 
TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE 
       22.19        27.98       169.38        67.86         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.42        10.55         7.79        13.25        25.41         9.60 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
       23.05         2.53        16.14         5.06        18.67         3.48 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        4.21         3.68         3.42        58.45        35.54        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       33.86        18.02        14.04        18.90        25.48        20.45 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8298 
        9.83        12.13        12.10        10.65        11.18        16.11 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V 
       21.63         0.49         3.02        19.23         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        0.46         0.43         0.20        13.38         1.91         4.37 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.22         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 
        0.79         0.82         0.36         1.61         0.33         1.08 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61H 
       34.75        15.95         4.01        14.50        19.33        13.55 
TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S 
        0.07        14.47         5.29        11.54        11.84         7.36 
TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
        6.90         0.46         1.12        12.89         1.84         3.65 
TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        3.68        29.92        15.78        54.31        23.70        10.85 
TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 
       36.82        47.01        19.00        63.02        18.97         2.04 
TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       12.99        16.01        13.15        18.18 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              2.10               0.07 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
            126.15             210.97 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
            16.040             16.175 
[1] "2.1 - 126.2 (16.0)" "0.1 - 211.0 (16.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D64V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  12Q LOSS MUTATED         1        5         2        13         0
  12Q LOSS WILD-TYPE      23       57        64       176         8
D64V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12Q LOSS MUTATED     1   8   1  11
  12Q LOSS WILD-TYPE  38  95  83 117
D64V4, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  T1                1                 38
  T2                8                 95
  T3                1                 83
  T4               11                117
                    vv
clus                  N0  N1  N2  N3
  12Q LOSS MUTATED     8   3   6   0
  12Q LOSS WILD-TYPE 126  49 119   7
D64V5, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  N0                8                126
  N1                3                 49
  N2                6                119
  N3                0                  7
D64V6, binary
                    cls
clus                  0  1
  12Q LOSS MUTATED    5  3
  12Q LOSS WILD-TYPE 98 40
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      5    3
  12Q LOSS WILD-TYPE   98   40
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  M0                5                 98
  MX                3                 40
D64V7, binary
                    cls
clus                   0   1
  12Q LOSS MUTATED     6  17
  12Q LOSS WILD-TYPE 110 271
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      6   17
  12Q LOSS WILD-TYPE  110  271
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  FEMALE                6                110
  MALE                 17                271
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  12Q LOSS MUTATED                                      23
  12Q LOSS WILD-TYPE                                   374
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  12Q LOSS MUTATED                                                             0
  12Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  12Q LOSS MUTATED                                                     0
  12Q LOSS WILD-TYPE                                                   6
D64V8, multiclass
                                                             clus
vv                                                            12Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     23
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            12Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      374
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D64V9, binary
                    cls
clus                   0   1
  12Q LOSS MUTATED     3  20
  12Q LOSS WILD-TYPE  76 305
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      3   20
  12Q LOSS WILD-TYPE   76  305
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 3                 76
  YES               20                305
D64V10, continuous
D64V11, continuous
D64V12, continuous

Clustering(65) Variable = 13Q LOSS MUTATION ANALYSIS
D65V1, survival
                    sevent
clus2                  0   1
  13Q LOSS MUTATED    82  43
  13Q LOSS WILD-TYPE 165 109
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               125                274 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                43                109 
$`13Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6869 
       15.19         9.07        42.35        17.10        57.44        21.17 
TCGA-BA-6871 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB 
        2.07         3.72         7.76        16.87        11.54         7.10 
TCGA-BA-A6DD TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7870 
        5.69         9.14         4.37        17.62        22.59        37.91 
TCGA-BB-7871 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-CN-4723 TCGA-CN-4725 
       14.07        71.05        20.52         0.16        23.70        15.95 
TCGA-CN-4730 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5367 
       15.19        34.68        26.66        35.54         8.32        11.57 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6018 
       22.45         9.53        14.73        13.94        20.68         1.48 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6994 TCGA-CN-6998 
        3.22         9.07         7.36        10.45         3.91         1.51 
TCGA-CN-A63T TCGA-CQ-5323 TCGA-CQ-5330 TCGA-CQ-6220 TCGA-CQ-6224 TCGA-CQ-6225 
        7.40        48.20        29.46        32.38        32.38        13.25 
TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CQ-A4CE TCGA-CQ-A4CI TCGA-CR-5249 TCGA-CR-6472 
       45.30        16.73        12.92        19.99        37.87        34.52 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6481 TCGA-CR-6487 TCGA-CR-7364 TCGA-CR-7372 
       16.90         6.02        10.22         7.69        47.18        24.95 
TCGA-CR-7374 TCGA-CR-7379 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7397 TCGA-CR-7402 
        0.99        34.06        17.13        32.78         7.10        29.95 
TCGA-CR-7404 TCGA-CV-5434 TCGA-CV-5441 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6940 
       48.39       108.33        94.88        60.49         7.07        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6950 TCGA-CV-6954 TCGA-CV-6962 TCGA-CV-7089 
       11.24       126.08        15.09        65.82         4.14        64.83 
TCGA-CV-7091 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
      111.16         7.99         9.01        52.31        12.92        21.80 
TCGA-CV-7235 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7263 TCGA-CV-7406 
       56.68        36.00        26.20        17.13        18.41        57.47 
TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7429 TCGA-CV-7435 
       22.85        25.94         0.07        34.09         3.52       142.52 
TCGA-CV-7440 TCGA-CV-A461 TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7219 TCGA-D6-6825 
       22.19        67.86        24.66        10.42        27.22        16.14 
TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7595 
        3.48         3.68        33.86        14.04        18.90        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A623 TCGA-HD-7753 
       11.18        18.54         0.49         3.02         0.20         0.16 
TCGA-HD-7917 TCGA-HD-8635 TCGA-IQ-A61O TCGA-KU-A66T TCGA-MT-A67G TCGA-MZ-A6I9 
        1.22         0.82        11.84         6.90         3.68         8.35 
TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A6SX TCGA-P3-A6T4 TCGA-P3-A6T7 
       15.78        54.31        47.01         2.04        16.01 

$`13Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 
        9.30        13.64        37.28         8.15        23.74        57.93 
TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6872 
       23.84        20.48        53.79         6.25        14.83        12.62 
TCGA-BA-A4IF TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 
       29.42         5.98         7.82         6.15        94.62         4.60 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7872 TCGA-C9-A480 
       18.35        10.19        13.91        20.98        14.33         0.13 
TCGA-CN-4722 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4731 
       26.27         4.67        14.86        20.15        12.89        32.65 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4741 
       21.11        21.11        12.99        17.79        14.33        41.69 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5364 
       13.05        16.04        16.83         5.69        12.39        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-6013 TCGA-CN-6016 
       11.54        11.84        12.49         8.52        14.24        10.39 
TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6992 
       20.68        12.85         6.64        13.94        20.09        12.95 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V 
        3.68        14.20        13.08        14.70        17.29        15.91 
TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5324 TCGA-CQ-5325 
       11.44         5.75        12.07         2.70        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
        2.93        54.58        46.75        45.99        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6227 TCGA-CQ-6228 
        4.24        28.60        32.88        34.75         4.24        14.99 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 
       26.79        48.03        33.11        43.04        29.62        28.83 
TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CG 
       31.82        11.61        20.15        17.92        18.02        12.85 
TCGA-CQ-A4CH TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5250 TCGA-CR-6467 
        9.96        84.23        11.77        54.67        26.27        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6480 TCGA-CR-6482 
       50.01        39.52        36.99        18.54        11.90        11.34 
TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 
       11.64        12.46        11.51        15.75         9.27        39.16 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 
       47.34        40.93        35.84         3.45         3.09        29.23 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7386 TCGA-CR-7388 
       31.96         9.17        19.92        26.17        47.01        27.06 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CV-5430 TCGA-CV-5431 
       30.58         5.13         5.95        35.41       139.43        17.16 
TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 
      129.21        47.28        19.20        17.95       107.51        76.50 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       91.53        80.12        17.06        13.35        23.05        86.83 
TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       48.59        43.23        54.74        21.07        62.43         9.60 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.12         2.14         9.70         5.46        20.52         4.73 
TCGA-CV-6939 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 
       21.90        19.79        12.03        42.38        30.08         6.08 
TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       53.95        10.98         7.13         8.42        28.34         2.50 
TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7178 
      126.15        18.81        12.66         5.26         1.84        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 
       10.75       114.97         4.73        47.47        31.36        18.97 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.85       210.97        89.33         9.67         0.46 
TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       25.08       100.57        14.89        56.48       156.49        54.94 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 
       16.27        84.49        19.76         7.17        16.64         6.38 
TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A6JD TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 
       27.98       169.38         5.98        10.55         7.79        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 
       25.41         9.60        23.05         2.53         5.06        18.67 
TCGA-D6-8569 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5631 
        4.21         3.42        58.45        35.54        16.96        18.02 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-F7-8298 
       25.48        20.45         9.83        12.13        12.10        16.11 
TCGA-F7-8489 TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 
       21.63        19.23         0.10        12.62         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8224 
       13.38         1.91         4.37         0.07         0.82         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 
        1.45         0.79         0.36         1.61         0.33         1.08 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G 
       34.75        15.95         4.01        14.50        19.33        11.84 
TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-KU-A66S 
       13.55         0.07        14.47         5.29        11.54         7.36 
TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-P3-A5Q5 
        0.46         1.12        12.89         1.84         3.65        29.92 
TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 
       23.70        10.85        36.82        19.00        63.02        18.97 
TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T8 TCGA-QK-A64Z 
       29.00        12.99        13.15        18.18 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.07               0.07 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            142.52             210.97 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             16.14              16.16 
[1] "0.1 - 142.5 (16.1)" "0.1 - 211.0 (16.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
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  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D65V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  13Q LOSS MUTATED        11       14        17        63         2
  13Q LOSS WILD-TYPE      13       48        49       126         6
D65V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  13Q LOSS MUTATED   15 32 19 42
  13Q LOSS WILD-TYPE 24 71 65 86
D65V4, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  T1               15                 24
  T2               32                 71
  T3               19                 65
  T4               42                 86
                    vv
clus                 N0 N1 N2 N3
  13Q LOSS MUTATED   36 15 45  2
  13Q LOSS WILD-TYPE 98 37 80  5
D65V5, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  N0               36                 98
  N1               15                 37
  N2               45                 80
  N3                2                  5
D65V6, binary
                    cls
clus                  0  1
  13Q LOSS MUTATED   32 12
  13Q LOSS WILD-TYPE 71 31
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     32   12
  13Q LOSS WILD-TYPE   71   31
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  M0               32                 71
  MX               12                 31
D65V7, binary
                    cls
clus                   0   1
  13Q LOSS MUTATED    34  93
  13Q LOSS WILD-TYPE  82 195
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     34   93
  13Q LOSS WILD-TYPE   82  195
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE               34                 82
  MALE                 93                195
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  13Q LOSS MUTATED                                     125
  13Q LOSS WILD-TYPE                                   272
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  13Q LOSS MUTATED                                                             1
  13Q LOSS WILD-TYPE                                                           0
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  13Q LOSS MUTATED                                                     1
  13Q LOSS WILD-TYPE                                                   5
D65V8, multiclass
                                                             clus
vv                                                            13Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    125
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            13Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      272
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          5
D65V9, binary
                    cls
clus                   0   1
  13Q LOSS MUTATED    24 103
  13Q LOSS WILD-TYPE  55 222
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     24  103
  13Q LOSS WILD-TYPE   55  222
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                24                 55
  YES              103                222
D65V10, continuous
D65V11, continuous
D65V12, continuous

Clustering(66) Variable = 14Q LOSS MUTATION ANALYSIS
D66V1, survival
                    sevent
clus2                  0   1
  14Q LOSS MUTATED    18  18
  14Q LOSS WILD-TYPE 229 134
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                36                363 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                18                134 
$`14Q LOSS MUTATED`
TCGA-BA-4078 TCGA-BA-5152 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-A6D8 
        9.07        42.35        21.17        14.83         2.07        16.87 
TCGA-BB-7862 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-A63U 
       17.62        12.85         3.22        12.95         3.68        17.29 
TCGA-CQ-5332 TCGA-CQ-6221 TCGA-CR-5247 TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-7398 
       10.42        32.88        11.77        50.01        34.52         5.13 
TCGA-CV-5966 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6939 TCGA-CV-6962 TCGA-CV-7263 
       17.06        90.12         9.70        21.90         4.14        18.41 
TCGA-CV-7406 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7435 TCGA-D6-6826 TCGA-D6-8569 
       57.47        34.09       100.57       142.52         5.06         4.21 
TCGA-DQ-5631 TCGA-DQ-7590 TCGA-F7-7848 TCGA-HD-8224 TCGA-MZ-A6I9 TCGA-P3-A6T0 
       18.02        25.48        18.54         1.81         8.35        19.00 

$`14Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 
       15.19         9.30        13.64        37.28         8.15        23.74 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.93        17.10        23.84        20.48        53.79        57.44 
TCGA-BA-6868 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6DA 
        6.25        12.62         3.72         7.76        29.42        11.54 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 
        7.10         5.69         5.98         7.82         6.15        94.62 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 
        9.14         4.60         4.37        18.35        10.19        13.91 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       22.59        20.98        37.91        14.07        14.33        71.05 
TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       20.52         0.16         0.13        26.27        23.70        15.95 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67        14.86        20.15        12.89        15.19        32.65 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       21.11        21.11        12.99        17.79        14.33        34.68 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.66        41.69        13.05        16.04        16.83         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        35.54         8.32        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        22.45         9.53        14.73 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       13.94        20.68        14.24        10.39        20.68         1.48 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.64        13.94         7.36        10.45        20.09 
TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T 
        3.91        14.20        13.08         1.51        14.70         7.40 
TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 
       15.91        11.44         5.75        12.07         2.70        48.20 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        54.58        46.75        29.46 
TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 
       45.99        11.21         4.24        28.60        32.38        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.38        13.25         4.24        14.99        26.79        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 
       45.30        33.11        16.73        43.04        29.62        28.83 
TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE 
       31.82        11.61        20.15        17.92        18.02        12.92 
TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       12.85         9.96        19.99        84.23        54.67        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       26.27        58.42        39.52        36.99        18.54        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.69 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.16 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.93        35.84         3.45         3.09        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.06        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.58 
TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        7.10         5.95        35.41        29.95        48.39       139.43 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5970 
      107.51        94.88        76.50        91.53        80.12        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       23.05        86.83        48.59        60.49         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6936 
       54.74        21.07        62.43         9.60         2.14         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
       20.52         4.73        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.38        15.09        30.08         6.08        53.95 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.42        28.34         2.50 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.83       126.15       111.16        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.26         1.84        52.31        12.92        21.80 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.97        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       36.00        31.36        26.20        18.97        17.13        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7407 
        4.96        11.87        47.97         2.10        36.13        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.85       210.97        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
       25.08        25.94         0.07        14.89        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.94         3.52        16.27        84.49        19.76         7.17 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 
       16.64         6.38        22.19        27.98       169.38        67.86 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        5.98        24.66        10.42        10.55         7.79        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        25.41         9.60        23.05         2.53        16.14 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 
       18.67         3.48         3.68         3.42        58.45        35.54 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 
       16.96        33.86        14.04        18.90        20.45         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65        11.18        16.11        21.63 
TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W 
        0.49         3.02        19.23         0.10        12.62         0.46 
TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.43         0.20        13.38         1.91         4.37         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.16         0.82         1.22         1.45         0.79         0.82 
TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 
        0.36         1.61         0.33         1.08        34.75        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I 
        4.01        14.50        19.33        11.84        13.55         0.07 
TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T 
       14.47         5.29        11.54        11.84         7.36         6.90 
TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G 
        0.46         1.12        12.89         1.84         3.65         3.68 
TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW 
       29.92        15.78        54.31        23.70        10.85        36.82 
TCGA-P3-A6SX TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 
       47.01        63.02        18.97         2.04        29.00        12.99 
TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       16.01        13.15        18.18 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              1.81               0.07 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
            142.52             210.97 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
            17.175             16.040 
[1] "1.8 - 142.5 (17.2)" "0.1 - 211.0 (16.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D66V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  14Q LOSS MUTATED         0        6         4        17         0
  14Q LOSS WILD-TYPE      24       56        62       172         8
D66V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  14Q LOSS MUTATED     0   8   9  11
  14Q LOSS WILD-TYPE  39  95  75 117
D66V4, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  T1                0                 39
  T2                8                 95
  T3                9                 75
  T4               11                117
                    vv
clus                  N0  N1  N2  N3
  14Q LOSS MUTATED    10   5   9   0
  14Q LOSS WILD-TYPE 124  47 116   7
D66V5, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  N0               10                124
  N1                5                 47
  N2                9                116
  N3                0                  7
D66V6, binary
                    cls
clus                  0  1
  14Q LOSS MUTATED    6  2
  14Q LOSS WILD-TYPE 97 41
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      6    2
  14Q LOSS WILD-TYPE   97   41
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  M0                6                 97
  MX                2                 41
D66V7, binary
                    cls
clus                   0   1
  14Q LOSS MUTATED     7  29
  14Q LOSS WILD-TYPE 109 259
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      7   29
  14Q LOSS WILD-TYPE  109  259
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  FEMALE                7                109
  MALE                 29                259
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  14Q LOSS MUTATED                                      36
  14Q LOSS WILD-TYPE                                   361
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  14Q LOSS MUTATED                                                             0
  14Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  14Q LOSS MUTATED                                                     0
  14Q LOSS WILD-TYPE                                                   6
D66V8, multiclass
                                                             clus
vv                                                            14Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     36
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            14Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      361
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D66V9, binary
                    cls
clus                   0   1
  14Q LOSS MUTATED     9  27
  14Q LOSS WILD-TYPE  70 298
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      9   27
  14Q LOSS WILD-TYPE   70  298
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 9                 70
  YES               27                298
D66V10, continuous
D66V11, continuous
D66V12, continuous

Clustering(67) Variable = 15Q LOSS MUTATION ANALYSIS
D67V1, survival
                    sevent
clus2                  0   1
  15Q LOSS MUTATED    38  35
  15Q LOSS WILD-TYPE 209 117
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                73                326 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                35                117 
$`15Q LOSS MUTATED`
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-7269 
       42.35        57.93        17.10        57.44         6.25         7.76 
TCGA-BA-A4IF TCGA-BA-A6DE TCGA-BB-4225 TCGA-BB-7870 TCGA-CN-4725 TCGA-CN-4728 
       29.42         5.98         4.60        37.91        15.95        20.15 
TCGA-CN-4730 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5370 TCGA-CN-6012 TCGA-CN-6021 
       15.19        12.39         8.32         8.52        20.68         9.07 
TCGA-CN-6024 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A63W TCGA-CQ-5326 
        7.36        14.20        13.08         1.51        11.44         2.93 
TCGA-CQ-5330 TCGA-CQ-5332 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7067 
       29.46        10.42        32.38         4.24        26.79        16.73 
TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4CE TCGA-CR-6478 TCGA-CR-7402 TCGA-CV-5435 
       31.82        11.61        12.92         6.02        29.95        47.28 
TCGA-CV-5441 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-6441 
       94.88        17.06        13.35        48.59        60.49         9.60 
TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6948 TCGA-CV-6954 TCGA-CV-6962 TCGA-CV-7095 
       20.52        26.43        42.38        65.82         4.14        18.81 
TCGA-CV-7104 TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7407 TCGA-CV-7424 TCGA-CV-7432 
       12.92        36.00        18.97        35.54        14.89        84.49 
TCGA-CV-7435 TCGA-CV-7438 TCGA-CX-7219 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6826 
      142.52         6.38        27.22         9.60        23.05         5.06 
TCGA-DQ-5624 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-F7-A50I TCGA-F7-A61S TCGA-F7-A623 
       58.45        18.02         9.83         3.02         0.10         0.20 
TCGA-IQ-A61E TCGA-IQ-A61O TCGA-KU-A66T TCGA-P3-A5QA TCGA-P3-A6T3 TCGA-P3-A6T4 
       19.33        11.84         6.90        54.31        18.97         2.04 
TCGA-P3-A6T5 
       29.00 

$`15Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6869 TCGA-BA-6870 
       23.74        23.84        20.48        53.79        21.17        14.83 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB 
        2.07        12.62         3.72        16.87        11.54         7.10 
TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        5.69         7.82         6.15        94.62         9.14         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.35        10.19        17.62        13.91        22.59        20.98 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 
       14.07        14.33        71.05        20.52         0.16         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4731 
       26.27        23.70         4.67        14.86        12.89        32.65 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       21.11        21.11        12.99        17.79        14.33        34.68 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.66        41.69        13.05        16.04        16.83         5.69 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       35.54        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 
       22.45         9.53        14.73        13.94        14.24        10.39 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 
       20.68         1.48        12.85         3.22         6.64        13.94 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-A49B 
       10.45        20.09        12.95         3.91         3.68        14.70 
TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 
        7.40        17.29        15.91         5.75        12.07         2.70 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 
       48.20        39.68        21.50        54.58        46.75        45.99 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.24        28.60        32.38        32.88        34.75 
TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 
       13.25        14.99        48.03        45.30        33.11        43.04 
TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CG 
       29.62        28.83        20.15        17.92        18.02        12.85 
TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
        9.96        19.99        84.23        11.77        54.67        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.27        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       18.54        16.90        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.69        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.16        47.34        40.93        35.84         3.45         3.09 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.06 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 
       30.58         7.10         5.13         5.95        35.41        48.39 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 
      139.43        17.16       129.21       108.33        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5971 TCGA-CV-5973 
      107.51        76.50        91.53        80.12        23.05        86.83 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 
        7.07        43.23        54.74        21.07        62.43        90.12 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 
        2.14         9.70         5.46         4.73        21.90        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
      126.08        19.79        12.03        15.09        30.08         6.08 
TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       53.95        10.98         7.13         8.42        28.34         2.50 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
       64.83       126.15       111.16        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        5.26         1.84        52.31        21.80        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7245 
      114.97        56.68         4.73        47.47        31.36        26.20 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.13        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       36.13        18.41        57.47        17.85       210.97        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.08        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
       34.09       100.57        56.48       156.49        54.94         3.52 
TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A45O 
       16.27        19.76         7.17        16.64        22.19        27.98 
TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 
      169.38        67.86         5.98        24.66        10.42        10.55 
TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 
        7.79        13.25        25.41         2.53        16.14        18.67 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5625 TCGA-DQ-5629 
        3.48         4.21         3.68         3.42        35.54        16.96 
TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 
       33.86        14.04        18.90        25.48        20.45        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.10        10.65        11.18        18.54        16.11        21.63 
TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 
        0.49        19.23        12.62         0.46         0.43        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        1.91         4.37         0.07         0.16         0.82         1.22 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 
        1.81         1.45         0.79         0.82         0.36         1.61 
TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.33         1.08        34.75        15.95         4.01        14.50 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L 
       11.84        13.55         0.07        14.47         5.29        11.54 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
        7.36         0.46         1.12        12.89         1.84         3.65 
TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QE TCGA-P3-A5QF 
        3.68         8.35        29.92        15.78        23.70        10.85 
TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T6 TCGA-P3-A6T7 
       36.82        47.01        19.00        63.02        12.99        16.01 
TCGA-P3-A6T8 TCGA-QK-A64Z 
       13.15        18.18 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.10               0.07 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            142.52             210.97 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            16.730             16.125 
[1] "0.1 - 142.5 (16.7)" "0.1 - 211.0 (16.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D67V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  15Q LOSS MUTATED         3       12        10        36         2
  15Q LOSS WILD-TYPE      21       50        56       153         6
D67V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  15Q LOSS MUTATED     4  18  20  22
  15Q LOSS WILD-TYPE  35  85  64 106
D67V4, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  T1                4                 35
  T2               18                 85
  T3               20                 64
  T4               22                106
                    vv
clus                  N0  N1  N2  N3
  15Q LOSS MUTATED    21   7  26   2
  15Q LOSS WILD-TYPE 113  45  99   5
D67V5, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  N0               21                113
  N1                7                 45
  N2               26                 99
  N3                2                  5
D67V6, binary
                    cls
clus                  0  1
  15Q LOSS MUTATED   13  9
  15Q LOSS WILD-TYPE 90 34
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     13    9
  15Q LOSS WILD-TYPE   90   34
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  M0               13                 90
  MX                9                 34
D67V7, binary
                    cls
clus                   0   1
  15Q LOSS MUTATED    22  52
  15Q LOSS WILD-TYPE  94 236
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     22   52
  15Q LOSS WILD-TYPE   94  236
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE               22                 94
  MALE                 52                236
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  15Q LOSS MUTATED                                      73
  15Q LOSS WILD-TYPE                                   324
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  15Q LOSS MUTATED                                                             1
  15Q LOSS WILD-TYPE                                                           0
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  15Q LOSS MUTATED                                                     0
  15Q LOSS WILD-TYPE                                                   6
D67V8, multiclass
                                                             clus
vv                                                            15Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     73
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            15Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      324
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D67V9, binary
                    cls
clus                   0   1
  15Q LOSS MUTATED    18  56
  15Q LOSS WILD-TYPE  61 269
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     18   56
  15Q LOSS WILD-TYPE   61  269
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                18                 61
  YES               56                269
D67V10, continuous
D67V11, continuous
D67V12, continuous

Clustering(68) Variable = 16P LOSS MUTATION ANALYSIS
D68V1, survival
                    sevent
clus2                  0   1
  16P LOSS MUTATED    27  20
  16P LOSS WILD-TYPE 220 132
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                47                352 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                20                132 
$`16P LOSS MUTATED`
TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-7269 TCGA-BA-A6DE TCGA-BB-7870 TCGA-BB-8596 
       13.64         9.07         7.76         5.98        37.91        71.05 
TCGA-BB-8601 TCGA-CN-4729 TCGA-CN-5363 TCGA-CN-5374 TCGA-CN-A63T TCGA-CQ-5330 
       20.52        12.89         8.32         9.53         7.40        29.46 
TCGA-CQ-6224 TCGA-CQ-A4C7 TCGA-CR-6473 TCGA-CR-7368 TCGA-CR-7374 TCGA-CR-7383 
       32.38        11.61        36.99        40.93         0.99        17.13 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 TCGA-CV-5436 TCGA-CV-6940 TCGA-CV-6950 
        5.13         5.95        29.95        19.20        26.43        15.09 
TCGA-CV-6962 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7407 TCGA-CV-7416 TCGA-CV-7418 
        4.14        56.68         4.73        35.54        25.08        25.94 
TCGA-CV-7424 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7438 TCGA-CX-7082 TCGA-D6-A4Z9 
       14.89         3.52        84.49         6.38        10.42         3.68 
TCGA-F7-A50G TCGA-F7-A50I TCGA-HD-7753 TCGA-HD-8224 TCGA-IQ-A61E TCGA-IQ-A61G 
        0.49         3.02         0.16         1.81        19.33        11.84 
TCGA-IQ-A61H TCGA-IQ-A61K TCGA-MZ-A6I9 TCGA-P3-A5Q6 TCGA-P3-A6SW 
       13.55         5.29         8.35        15.78        36.82 

$`16P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.19         9.30        37.28         8.15        23.74        42.35 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.93        17.10        23.84        20.48        53.79        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        6.25        21.17        14.83         2.07        12.62         3.72 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DF 
       29.42        16.87        11.54         7.10         5.69         7.82 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.15        94.62         9.14         4.60         4.37        18.35 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 
       10.19        17.62        13.91        22.59        20.98        14.07 
TCGA-BB-7872 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       14.33         0.16         0.13        26.27        23.70        15.95 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        4.67        14.86        20.15        15.19        32.65        21.11 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       21.11        12.99        17.79        14.33        34.68        26.66 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       41.69        13.05        16.04        16.83         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       35.54        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
        8.52        22.45        14.73        13.94        20.68        14.24 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
       10.39        20.68         1.48        12.85         3.22         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.64        13.94         7.36        10.45        20.09        12.95 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
        3.91         3.68        14.20        13.08         1.51        14.70 
TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 
       17.29        15.91        11.44         5.75        12.07         2.70 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.20        39.68        21.50         2.93        54.58        46.75 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       45.99        10.42        11.21         4.24        28.60        32.38 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.88        34.75        13.25         4.24        14.99        26.79 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.30        33.11        16.73        43.04        29.62 
TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE 
       28.83        31.82        20.15        17.92        18.02        12.92 
TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       12.85         9.96        19.99        84.23        11.77        54.67 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.27        58.42        50.01        39.52        34.52 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.54        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.69        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       47.18        39.16        47.34        35.84         3.45         3.09 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       26.17        32.78        47.01        27.06        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.58         7.10 
TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       35.41        48.39       139.43        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       47.28        17.95       107.51        94.88        76.50        91.53 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       80.12        17.06        13.35        23.05        86.83        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       60.49         7.07        43.23        54.74        21.07        62.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        9.60        90.12         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.73        21.90        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       42.38        30.08         6.08        53.95        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 
        7.13         8.42        28.34         2.50        64.83       126.15 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.16        18.81        12.66         7.99         9.01         5.26 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.92        21.80        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
      114.97        47.47        36.00        31.36        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.13        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       36.13        18.41        57.47        17.85       210.97        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        9.67         0.46        22.85         0.07        34.09       100.57 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 
       56.48       156.49        54.94        16.27        19.76         7.17 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 
      142.52        16.64        22.19        27.98       169.38        67.86 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
        5.98        24.66        10.55         7.79        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       25.41         9.60        23.05         2.53        16.14         5.06 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 
       18.67         3.48         4.21         3.42        58.45        35.54 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        33.86        18.02        14.04        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       20.45         9.83        12.13        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V 
       18.54        16.11        21.63        19.23         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        0.46         0.43         0.20        13.38         1.91         4.37 
TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.07         0.82         1.22         1.45         0.79         0.82 
TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 
        0.36         1.61         0.33         1.08        34.75        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61L TCGA-IQ-A61O 
        4.01        14.50         0.07        14.47        11.54        11.84 
TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D 
        7.36         6.90         0.46         1.12        12.89         1.84 
TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        3.65         3.68        29.92        54.31        23.70        10.85 
TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 
       47.01        19.00        63.02        18.97         2.04        29.00 
TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       12.99        16.01        13.15        18.18 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.16               0.07 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             84.49             210.97 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             12.89              16.85 
[1] "0.2 - 84.5 (12.9)"  "0.1 - 211.0 (16.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D68V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  16P LOSS MUTATED         3        6         8        22         2
  16P LOSS WILD-TYPE      21       56        58       167         6
D68V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16P LOSS MUTATED     3  13  14  11
  16P LOSS WILD-TYPE  36  90  70 117
D68V4, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  T1                3                 36
  T2               13                 90
  T3               14                 70
  T4               11                117
                    vv
clus                  N0  N1  N2  N3
  16P LOSS MUTATED    10   7  17   2
  16P LOSS WILD-TYPE 124  45 108   5
D68V5, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  N0               10                124
  N1                7                 45
  N2               17                108
  N3                2                  5
D68V6, binary
                    cls
clus                  0  1
  16P LOSS MUTATED   12  8
  16P LOSS WILD-TYPE 91 35
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     12    8
  16P LOSS WILD-TYPE   91   35
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  M0               12                 91
  MX                8                 35
D68V7, binary
                    cls
clus                   0   1
  16P LOSS MUTATED    15  32
  16P LOSS WILD-TYPE 101 256
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     15   32
  16P LOSS WILD-TYPE  101  256
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  FEMALE               15                101
  MALE                 32                256
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  16P LOSS MUTATED                                      46
  16P LOSS WILD-TYPE                                   351
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  16P LOSS MUTATED                                                             0
  16P LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  16P LOSS MUTATED                                                     1
  16P LOSS WILD-TYPE                                                   5
D68V8, multiclass
                                                             clus
vv                                                            16P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     46
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            16P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      351
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          5
D68V9, binary
                    cls
clus                   0   1
  16P LOSS MUTATED     5  42
  16P LOSS WILD-TYPE  74 283
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      5   42
  16P LOSS WILD-TYPE   74  283
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 5                 74
  YES               42                283
D68V10, continuous
D68V11, continuous
D68V12, continuous

Clustering(69) Variable = 16Q LOSS MUTATION ANALYSIS
D69V1, survival
                    sevent
clus2                  0   1
  16Q LOSS MUTATED    40  19
  16Q LOSS WILD-TYPE 207 133
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                59                340 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                19                133 
$`16Q LOSS MUTATED`
TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5559 TCGA-BB-4225 TCGA-BB-7861 
       13.64         9.07        57.93        57.44         4.60        10.19 
TCGA-BB-7862 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4729 
       17.62        20.98        37.91        71.05        20.52        12.89 
TCGA-CN-5356 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6021 
       16.83        35.54         8.32         9.53        20.68         9.07 
TCGA-CN-A63T TCGA-CN-A63U TCGA-CQ-6224 TCGA-CQ-A4C7 TCGA-CR-5243 TCGA-CR-6467 
        7.40        17.29        32.38        11.61        84.23        58.42 
TCGA-CR-6473 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-7368 TCGA-CR-7370 TCGA-CR-7398 
       36.99        10.22        11.64        40.93         3.45         5.13 
TCGA-CR-7402 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-6940 TCGA-CV-6962 TCGA-CV-7235 
       29.95        91.53        80.12        26.43         4.14        56.68 
TCGA-CV-7236 TCGA-CV-7407 TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7424 TCGA-CV-7428 
        4.73        35.54         0.46        25.94        14.89        54.94 
TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7438 TCGA-CX-7082 TCGA-D6-6827 TCGA-D6-A4Z9 
        3.52        84.49         6.38        10.42        18.67         3.68 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-F7-A50I TCGA-HD-8224 TCGA-IQ-A61E 
       18.90        25.48        20.45         3.02         1.81        19.33 
TCGA-IQ-A61H TCGA-IQ-A61I TCGA-MZ-A6I9 TCGA-P3-A5QE TCGA-P3-A6SW 
       13.55         0.07         8.35        23.70        36.82 

$`16Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.19         9.30        37.28         8.15        23.74        42.35 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 
       17.10        23.84        20.48        53.79         6.25        21.17 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF 
       14.83         2.07        12.62         3.72         7.76        29.42 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF 
       16.87        11.54         7.10         5.69         5.98         7.82 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7863 
        6.15        94.62         9.14         4.37        18.35        13.91 
TCGA-BB-7864 TCGA-BB-7871 TCGA-BB-7872 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       22.59        14.07        14.33         0.16         0.13        26.27 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 
       23.70        15.95         4.67        14.86        20.15        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       32.65        21.11        21.11        12.99        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 
       34.68        26.66        41.69        13.05        16.04         5.69 
TCGA-CN-5359 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       12.39        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 
        8.52        22.45        14.73        13.94        14.24        10.39 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 
       20.68         1.48        12.85         3.22         6.64        13.94 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36        10.45        20.09        12.95         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63W 
       14.20        13.08         1.51        14.70        15.91        11.44 
TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        5.75        12.07         2.70        48.20        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        54.58        46.75        29.46        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.24        28.60        32.38        32.88        34.75 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.24        14.99        26.79        48.03        45.30 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 
       33.11        16.73        43.04        29.62        28.83        31.82 
TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH 
       20.15        17.92        18.02        12.92        12.85         9.96 
TCGA-CQ-A4CI TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 
       19.99        11.77        54.67        37.87        26.27        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       39.52        34.52        18.54        16.90         6.02        11.90 
TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.34         7.69        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 
       47.18        39.16        47.34        35.84         3.09        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.06        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.58 
TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        7.10         5.95        35.41        48.39       139.43        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95       107.51 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       94.88        76.50        17.06        13.35        23.05        86.83 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        60.49         7.07        43.23        54.74        21.07 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       62.43         9.60        90.12         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
       20.52         4.73        21.90        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.38        15.09        30.08         6.08        53.95 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.42        28.34         2.50 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.83       126.15       111.16        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.26         1.84        52.31        12.92        21.80 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
       71.21        10.75       114.97        47.47        36.00        31.36 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.13        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 
       47.97         2.10        36.13        18.41        57.47        17.85 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 
      210.97        89.33         9.67        22.85        25.08         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7430 TCGA-CV-7433 
       34.09       100.57        56.48       156.49        16.27        19.76 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q 
        7.17       142.52        16.64        22.19        27.98       169.38 
TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
       67.86         5.98        24.66        10.55         7.79        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        25.41         9.60        23.05         2.53        16.14 
TCGA-D6-6826 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 
        5.06         3.48         4.21         3.42        58.45        35.54 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7592 TCGA-DQ-7593 
       16.96        33.86        18.02        14.04         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.10        10.65        11.18        18.54        16.11        21.63 
TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 
        0.49        19.23         0.10        12.62         0.46         0.43 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.20        13.38         1.91         4.37         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 
        0.82         1.22         1.45         0.79         0.82         0.36 
TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.61         0.33         1.08        34.75        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61G TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O 
       14.50        11.84        14.47         5.29        11.54        11.84 
TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D 
        7.36         6.90         0.46         1.12        12.89         1.84 
TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QF 
        3.65         3.68        29.92        15.78        54.31        10.85 
TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 
       47.01        19.00        63.02        18.97         2.04        29.00 
TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       12.99        16.01        13.15        18.18 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.07               0.07 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             91.53             210.97 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            17.620             16.025 
[1] "0.1 - 91.5 (17.6)"  "0.1 - 211.0 (16.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
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  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D69V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  16Q LOSS MUTATED         2        5        11        23         2
  16Q LOSS WILD-TYPE      22       57        55       166         6
D69V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16Q LOSS MUTATED     4  14  13  13
  16Q LOSS WILD-TYPE  35  89  71 115
D69V4, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  T1                4                 35
  T2               14                 89
  T3               13                 71
  T4               13                115
                    vv
clus                  N0  N1  N2  N3
  16Q LOSS MUTATED    11   9  17   2
  16Q LOSS WILD-TYPE 123  43 108   5
D69V5, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  N0               11                123
  N1                9                 43
  N2               17                108
  N3                2                  5
D69V6, binary
                    cls
clus                  0  1
  16Q LOSS MUTATED   11  8
  16Q LOSS WILD-TYPE 92 35
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     11    8
  16Q LOSS WILD-TYPE   92   35
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  M0               11                 92
  MX                8                 35
D69V7, binary
                    cls
clus                   0   1
  16Q LOSS MUTATED    12  47
  16Q LOSS WILD-TYPE 104 241
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     12   47
  16Q LOSS WILD-TYPE  104  241
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE               12                104
  MALE                 47                241
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  16Q LOSS MUTATED                                      57
  16Q LOSS WILD-TYPE                                   340
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  16Q LOSS MUTATED                                                             0
  16Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  16Q LOSS MUTATED                                                     2
  16Q LOSS WILD-TYPE                                                   4
D69V8, multiclass
                                                             clus
vv                                                            16Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     57
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        2
                                                             clus
vv                                                            16Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      340
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D69V9, binary
                    cls
clus                   0   1
  16Q LOSS MUTATED     9  50
  16Q LOSS WILD-TYPE  70 275
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      9   50
  16Q LOSS WILD-TYPE   70  275
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 9                 70
  YES               50                275
D69V10, continuous
D69V11, continuous
D69V12, continuous

Clustering(70) Variable = 17P LOSS MUTATION ANALYSIS
D70V1, survival
                    sevent
clus2                  0   1
  17P LOSS MUTATED    53  36
  17P LOSS WILD-TYPE 194 116
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                89                310 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                36                116 
$`17P LOSS MUTATED`
TCGA-BA-5149 TCGA-BA-5152 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 
        8.15        42.35        20.48        57.44         6.25        14.83 
TCGA-BA-6871 TCGA-BA-A6D8 TCGA-BA-A6DE TCGA-BB-4223 TCGA-BB-7862 TCGA-BB-7866 
        2.07        16.87         5.98        94.62        17.62        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-CN-4725 TCGA-CN-4730 TCGA-CN-4735 TCGA-CN-4739 
       37.91        14.07        15.95        15.19        21.11        34.68 
TCGA-CN-4742 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5374 TCGA-CN-6988 TCGA-CN-A63W 
       13.05        35.54        16.21         9.53        10.45        11.44 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6228 
       32.38        32.88        34.75        32.38        13.25        14.99 
TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CR-6472 TCGA-CR-6481 
       16.73        29.62        11.61        20.15        34.52        10.22 
TCGA-CR-6484 TCGA-CR-7364 TCGA-CR-7371 TCGA-CR-7390 TCGA-CR-7398 TCGA-CV-5431 
       11.64        47.18         3.09        29.82         5.13        17.16 
TCGA-CV-5439 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5978 TCGA-CV-6441 
       17.95        80.12        17.06        13.35         7.07         9.60 
TCGA-CV-6953 TCGA-CV-6961 TCGA-CV-7102 TCGA-CV-7180 TCGA-CV-7245 TCGA-CV-7247 
       53.95         2.50         1.84        10.75        26.20        18.97 
TCGA-CV-7253 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7424 
       11.87        18.41        57.47         0.07       100.57        14.89 
TCGA-CV-7428 TCGA-CV-7435 TCGA-CV-7440 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6823 
       54.94       142.52        22.19         7.79        27.22        23.05 
TCGA-D6-6826 TCGA-D6-8569 TCGA-DQ-5629 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7595 
        5.06         4.21        16.96        14.04        20.45        10.65 
TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A620 TCGA-F7-A623 TCGA-HD-8635 TCGA-IQ-7630 
        0.49        19.23         0.43         0.20         0.82        15.95 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-MT-A67D TCGA-MT-A67G TCGA-P3-A5Q6 TCGA-P3-A5QA 
       11.84        13.55         1.84         3.68        15.78        54.31 
TCGA-P3-A5QE TCGA-P3-A6SX TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       23.70        47.01        16.01        13.15        18.18 

$`17P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.19         9.30        13.64        37.28         9.07        23.74 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-6869 TCGA-BA-6872 
       57.93        17.10        23.84        53.79        21.17        12.62 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD 
        3.72         7.76        29.42        11.54         7.10         5.69 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        7.82         6.15         9.14         4.60         4.37        18.35 
TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       10.19        13.91        22.59        14.33        71.05        20.52 
TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 
        0.16         0.13        26.27        23.70         4.67        14.86 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 
       20.15        12.89        32.65        21.11        12.99        17.79 
TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       14.33        26.66        41.69        16.04        16.83         5.69 
TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       12.39         8.32        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
        8.52        22.45        14.73        13.94        20.68        14.24 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
       10.39        20.68         1.48        12.85         3.22         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.64        13.94         7.36        20.09        12.95         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T 
        3.68        14.20        13.08         1.51        14.70         7.40 
TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 
       17.29        15.91         5.75        12.07         2.70        48.20 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        54.58        46.75        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6227 
       45.99        10.42        11.21         4.24        28.60         4.24 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7071 
       26.79        48.03        45.30        33.11        43.04        28.83 
TCGA-CQ-A4C6 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH 
       31.82        17.92        18.02        12.92        12.85         9.96 
TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       19.99        84.23        11.77        54.67        37.87        26.27 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       58.42        50.01        39.52        36.99        18.54        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
        6.02        11.90        11.34         7.69        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
       15.75         9.27        39.16        47.34        40.93        35.84 
TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.45        24.95        29.23         0.99        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.06        12.89        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       30.58         7.10         5.95        35.41        29.95        48.39 
TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 
      139.43       129.21       108.33        47.28        19.20       107.51 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       94.88        76.50        91.53        23.05        86.83        48.59 
TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 
       60.49        43.23        54.74        21.07        62.43        90.12 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.73        21.90 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.38 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       15.09        30.08         6.08        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
        8.42        28.34         4.14        64.83       126.15       111.16 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 
       18.81        12.66         7.99         9.01         5.26        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       12.92        21.80        71.21       114.97        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       47.47        36.00        31.36        17.13        95.34         4.96 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       47.97         2.10        36.13        35.54        17.85       210.97 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.08        25.94 
TCGA-CV-7422 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       34.09        56.48       156.49         3.52        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-A45O TCGA-CV-A45Q 
       19.76         7.17        16.64         6.38        27.98       169.38 
TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 
       67.86         5.98        24.66        10.42        10.55        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 
       25.41         9.60         2.53        16.14        18.67         3.48 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 
        3.68         3.42        58.45        35.54        33.86        18.02 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7596 
       18.90        25.48         9.83        12.13        12.10        11.18 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A61S TCGA-F7-A61V 
       18.54        16.11        21.63         3.02         0.10        12.62 
TCGA-F7-A61W TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.46        13.38         1.91         4.37         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-A4C1 
        0.82         1.22         1.81         1.45         0.79         0.36 
TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
        1.61         0.33         1.08        34.75         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O 
       19.33         0.07        14.47         5.29        11.54        11.84 
TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67F 
        7.36         6.90         0.46         1.12        12.89         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6T0 TCGA-P3-A6T2 
        8.35        29.92        10.85        36.82        19.00        63.02 
TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 
       18.97         2.04        29.00        12.99 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.07               0.07 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            142.52             210.97 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            16.010             16.205 
[1] "0.1 - 142.5 (16.0)" "0.1 - 211.0 (16.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
[1] "hr=" "1.2"
D70V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  17P LOSS MUTATED         2       16        17        42         1
  17P LOSS WILD-TYPE      22       46        49       147         7
D70V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17P LOSS MUTATED     7  24  21  27
  17P LOSS WILD-TYPE  32  79  63 101
D70V4, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  T1                7                 32
  T2               24                 79
  T3               21                 63
  T4               27                101
                    vv
clus                  N0  N1  N2  N3
  17P LOSS MUTATED    28  13  30   1
  17P LOSS WILD-TYPE 106  39  95   6
D70V5, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  N0               28                106
  N1               13                 39
  N2               30                 95
  N3                1                  6
D70V6, binary
                    cls
clus                  0  1
  17P LOSS MUTATED   22 12
  17P LOSS WILD-TYPE 81 31
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     22   12
  17P LOSS WILD-TYPE   81   31
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  M0               22                 81
  MX               12                 31
D70V7, binary
                    cls
clus                   0   1
  17P LOSS MUTATED    23  67
  17P LOSS WILD-TYPE  93 221
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     23   67
  17P LOSS WILD-TYPE   93  221
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE               23                 93
  MALE                 67                221
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  17P LOSS MUTATED                                      89
  17P LOSS WILD-TYPE                                   308
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  17P LOSS MUTATED                                                             0
  17P LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  17P LOSS MUTATED                                                     1
  17P LOSS WILD-TYPE                                                   5
D70V8, multiclass
                                                             clus
vv                                                            17P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     89
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            17P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      308
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          5
D70V9, binary
                    cls
clus                   0   1
  17P LOSS MUTATED    19  71
  17P LOSS WILD-TYPE  60 254
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     19   71
  17P LOSS WILD-TYPE   60  254
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                19                 60
  YES               71                254
D70V10, continuous
D70V11, continuous
D70V12, continuous

Clustering(71) Variable = 17Q LOSS MUTATION ANALYSIS
D71V1, survival
                    sevent
clus2                  0   1
  17Q LOSS MUTATED    19  10
  17Q LOSS WILD-TYPE 228 142
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                29                370 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                10                142 
$`17Q LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 TCGA-BB-4223 
        9.30        57.44         6.25        14.83         2.07        94.62 
TCGA-CN-4739 TCGA-CN-5374 TCGA-CN-6011 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 
       34.68         9.53        13.94        32.38        32.88        32.38 
TCGA-CQ-7067 TCGA-CQ-A4C7 TCGA-CR-6484 TCGA-CV-5966 TCGA-D6-6823 TCGA-D6-6826 
       16.73        11.61        11.64        17.06        23.05         5.06 
TCGA-F7-A50G TCGA-F7-A620 TCGA-HD-8635 TCGA-IQ-7630 TCGA-IQ-A61G TCGA-IQ-A61H 
        0.49         0.43         0.82        15.95        11.84        13.55 
TCGA-MT-A67G TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A6SX 
        3.68        15.78        54.31        23.70        47.01 

$`17Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.19        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       42.35        57.93        17.10        23.84        20.48        53.79 
TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 
       21.17        12.62         3.72         7.76        29.42        16.87 
TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 
       11.54         7.10         5.69         5.98         7.82         6.15 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        9.14         4.60         4.37        18.35        10.19        17.62 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.91        22.59        20.98        37.91        14.07        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       71.05        20.52         0.16         0.13        26.27        23.70 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       15.95         4.67        14.86        20.15        12.89        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       32.65        21.11        21.11        12.99        17.79        14.33 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.66        41.69        13.05        16.04        16.83         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        35.54         8.32        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6012 
       11.57        12.49         8.52        22.45        14.73        20.68 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
       14.24        10.39        20.68         1.48        12.85         3.22 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.64        13.94         7.36        10.45        20.09 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
       12.95         3.91         3.68        14.20        13.08         1.51 
TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y 
       14.70         7.40        17.29        15.91        11.44         5.75 
TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
       12.07         2.70        48.20        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       54.58        46.75        29.46        45.99        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
        4.24        28.60        34.75        13.25         4.24        14.99 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 
       26.79        48.03        45.30        33.11        43.04        29.62 
TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE 
       28.83        31.82        20.15        17.92        18.02        12.92 
TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       12.85         9.96        19.99        84.23        11.77        54.67 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.27        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.54        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.34         7.69        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.16        47.34        40.93        35.84         3.45 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.09        24.95        29.23         0.99        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.06        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.58         7.10         5.13         5.95        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.95        48.39       139.43        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95       107.51        94.88        76.50 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       91.53        80.12        13.35        23.05        86.83        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       60.49         7.07        43.23        54.74        21.07        62.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        9.60        90.12         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.73        21.90        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.38        15.09        30.08         6.08        53.95 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.42        28.34         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.83       126.15       111.16        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.26         1.84        52.31        12.92 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.80        71.21        10.75       114.97        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.36        26.20        18.97        17.13 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.85       210.97        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.08        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.57        14.89        56.48       156.49        54.94 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.52        16.27        84.49        19.76         7.17       142.52 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 
       16.64         6.38        22.19        27.98       169.38        67.86 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        5.98        24.66        10.42        10.55         7.79        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 
       13.25        25.41         9.60         2.53        16.14        18.67 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 
        3.48         4.21         3.68         3.42        58.45        35.54 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        33.86        18.02        14.04        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       20.45         9.83        12.13        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S 
       18.54        16.11        21.63         3.02        19.23         0.10 
TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
       12.62         0.46         0.20        13.38         1.91         4.37 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.22         1.81         1.45 
TCGA-HD-8634 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 
        0.79         0.36         1.61         0.33         1.08        34.75 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K 
        4.01        14.50        19.33         0.07        14.47         5.29 
TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X 
       11.54        11.84         7.36         6.90         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QF 
       12.89         1.84         3.65         8.35        29.92        10.85 
TCGA-P3-A6SW TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 
       36.82        19.00        63.02        18.97         2.04        29.00 
TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       12.99        16.01        13.15        18.18 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              0.43               0.07 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             94.62             210.97 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
            14.830             16.455 
[1] "0.4 - 94.6 (14.8)"  "0.1 - 211.0 (16.5)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D71V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  17Q LOSS MUTATED         2        3         8        12         0
  17Q LOSS WILD-TYPE      22       59        58       177         8
D71V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17Q LOSS MUTATED     4  10   5   7
  17Q LOSS WILD-TYPE  35  93  79 121
D71V4, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  T1                4                 35
  T2               10                 93
  T3                5                 79
  T4                7                121
                    vv
clus                  N0  N1  N2  N3
  17Q LOSS MUTATED     8   7   9   0
  17Q LOSS WILD-TYPE 126  45 116   7
D71V5, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  N0                8                126
  N1                7                 45
  N2                9                116
  N3                0                  7
D71V6, binary
                    cls
clus                  0  1
  17Q LOSS MUTATED    8  8
  17Q LOSS WILD-TYPE 95 35
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      8    8
  17Q LOSS WILD-TYPE   95   35
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  M0                8                 95
  MX                8                 35
D71V7, binary
                    cls
clus                   0   1
  17Q LOSS MUTATED     8  22
  17Q LOSS WILD-TYPE 108 266
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      8   22
  17Q LOSS WILD-TYPE  108  266
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE                8                108
  MALE                 22                266
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  17Q LOSS MUTATED                                      29
  17Q LOSS WILD-TYPE                                   368
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  17Q LOSS MUTATED                                                             0
  17Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  17Q LOSS MUTATED                                                     1
  17Q LOSS WILD-TYPE                                                   5
D71V8, multiclass
                                                             clus
vv                                                            17Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     29
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            17Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      368
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          5
D71V9, binary
                    cls
clus                   0   1
  17Q LOSS MUTATED     8  22
  17Q LOSS WILD-TYPE  71 303
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      8   22
  17Q LOSS WILD-TYPE   71  303
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 8                 71
  YES               22                303
D71V10, continuous
D71V11, continuous
D71V12, continuous

Clustering(72) Variable = 18P LOSS MUTATION ANALYSIS
D72V1, survival
                    sevent
clus2                  0   1
  18P LOSS MUTATED    44  39
  18P LOSS WILD-TYPE 203 113
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                83                316 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                39                113 
$`18P LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-5557 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-A4IF TCGA-BA-A6D8 
        9.30        20.48         6.25        14.83        29.42        16.87 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BB-8601 TCGA-CN-4727 TCGA-CN-4735 TCGA-CN-4739 
        7.10         5.69        20.52        14.86        21.11        34.68 
TCGA-CN-4740 TCGA-CN-5370 TCGA-CN-6010 TCGA-CN-6019 TCGA-CN-6994 TCGA-CN-6995 
       26.66         8.52        14.73        12.85         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5325 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 
       14.20         1.51        21.50        32.38        34.75        32.38 
TCGA-CQ-6225 TCGA-CQ-A4C7 TCGA-CQ-A4CG TCGA-CR-6484 TCGA-CR-7367 TCGA-CR-7373 
       13.25        11.61        12.85        11.64        47.34        29.23 
TCGA-CR-7374 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-6003 
        0.99        47.28        17.95        80.12        17.06        54.74 
TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6948 TCGA-CV-6953 
       90.12        20.52        26.43       126.08        42.38        53.95 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7103 TCGA-CV-7104 
       28.34         2.50       111.16        18.81        52.31        12.92 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7245 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 
       56.68         4.73        26.20        36.13        18.41        35.54 
TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 
       25.08       100.57        14.89         3.52        84.49        19.76 
TCGA-CV-7438 TCGA-CX-7219 TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 
        6.38        27.22        58.45        16.96        33.86        14.04 
TCGA-F7-7848 TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A620 TCGA-F7-A623 TCGA-HD-7229 
       18.54        21.63         3.02         0.43         0.20         0.07 
TCGA-IQ-7630 TCGA-IQ-A61E TCGA-IQ-A61H TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S 
       15.95        19.33        13.55        11.54        11.84         7.36 
TCGA-MT-A51W TCGA-MT-A67D TCGA-P3-A6T0 TCGA-P3-A6T5 TCGA-P3-A6T8 
        0.46         1.84        19.00        29.00        13.15 

$`18P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.19        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-5559 
       42.35        57.93        17.10        23.84        53.79        57.44 
TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6DA 
       21.17         2.07        12.62         3.72         7.76        11.54 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.98         7.82         6.15        94.62         9.14         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.35        10.19        17.62        13.91        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-C9-A47Z 
       20.98        37.91        14.07        14.33        71.05         0.16 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 
        0.13        26.27        23.70        15.95         4.67        20.15 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 
       12.89        15.19        32.65        21.11        12.99        17.79 
TCGA-CN-4738 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       14.33        41.69        13.05        16.04        16.83         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        35.54         8.32        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 
       11.57        12.49        22.45         9.53        13.94        20.68 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6020 TCGA-CN-6021 
       14.24        10.39        20.68         1.48         3.22         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.64        13.94         7.36        10.45        20.09        12.95 
TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W 
       13.08        14.70         7.40        17.29        15.91        11.44 
TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5326 
        5.75        12.07         2.70        48.20        39.68         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       54.58        46.75        29.46        45.99        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
        4.24        28.60        32.88         4.24        14.99        26.79 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.30        33.11        16.73        43.04        29.62 
TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE 
       28.83        31.82        20.15        17.92        18.02        12.92 
TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
        9.96        19.99        84.23        11.77        54.67        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.27        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.54        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.69        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       39.16        40.93        35.84         3.45         3.09        24.95 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.06        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.58         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.95        35.41        29.95        48.39       139.43        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
      129.21       108.33        19.20       107.51        94.88        76.50 
TCGA-CV-5443 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       91.53        13.35        23.05        86.83        48.59        60.49 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 
        7.07        43.23        21.07        62.43         9.60         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6943 
        9.70         5.46         4.73        21.90        11.24        19.79 
TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6955 
       12.03        15.09        30.08         6.08        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7097 
        7.13         8.42         4.14        64.83       126.15        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7177 TCGA-CV-7178 
        7.99         9.01         5.26         1.84        21.80        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 
       10.75       114.97        47.47        36.00        31.36        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.13        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       57.47        17.85       210.97        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7425 TCGA-CV-7427 
       22.85        25.94         0.07        34.09        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 
       54.94        16.27         7.17       142.52        16.64        22.19 
TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 
       27.98       169.38        67.86         5.98        24.66        10.42 
TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
       10.55         7.79        13.25        25.41         9.60        23.05 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53        16.14         5.06        18.67         3.48         4.21 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5625 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 
        3.68         3.42        35.54        18.02        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       20.45         9.83        12.13        12.10        10.65        11.18 
TCGA-F7-8298 TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W 
       16.11         0.49        19.23         0.10        12.62         0.46 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
       13.38         1.91         4.37         0.16         0.82         1.22 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 
        1.81         1.45         0.79         0.82         0.36         1.61 
TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61G 
        0.33         1.08        34.75         4.01        14.50        11.84 
TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-KU-A66T TCGA-MT-A51X TCGA-MT-A67A 
        0.07        14.47         5.29         6.90         1.12        12.89 
TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA 
        3.65         3.68         8.35        29.92        15.78        54.31 
TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T2 TCGA-P3-A6T3 
       23.70        10.85        36.82        47.01        63.02        18.97 
TCGA-P3-A6T4 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-QK-A64Z 
        2.04        12.99        16.01        18.18 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              0.07               0.07 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            126.08             210.97 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             18.41              15.93 
[1] "0.1 - 126.1 (18.4)" "0.1 - 211.0 (15.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D72V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  18P LOSS MUTATED         5       15        16        38         1
  18P LOSS WILD-TYPE      19       47        50       151         7
D72V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  18P LOSS MUTATED     8  21  18  28
  18P LOSS WILD-TYPE  31  82  66 100
D72V4, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  T1                8                 31
  T2               21                 82
  T3               18                 66
  T4               28                100
                    vv
clus                  N0  N1  N2  N3
  18P LOSS MUTATED    33  14  20   1
  18P LOSS WILD-TYPE 101  38 105   6
D72V5, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  N0               33                101
  N1               14                 38
  N2               20                105
  N3                1                  6
D72V6, binary
                    cls
clus                  0  1
  18P LOSS MUTATED   21  9
  18P LOSS WILD-TYPE 82 34
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     21    9
  18P LOSS WILD-TYPE   82   34
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  M0               21                 82
  MX                9                 34
D72V7, binary
                    cls
clus                   0   1
  18P LOSS MUTATED    27  56
  18P LOSS WILD-TYPE  89 232
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     27   56
  18P LOSS WILD-TYPE   89  232
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE               27                 89
  MALE                 56                232
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  18P LOSS MUTATED                                      81
  18P LOSS WILD-TYPE                                   316
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  18P LOSS MUTATED                                                             1
  18P LOSS WILD-TYPE                                                           0
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  18P LOSS MUTATED                                                     1
  18P LOSS WILD-TYPE                                                   5
D72V8, multiclass
                                                             clus
vv                                                            18P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     81
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            18P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      316
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          5
D72V9, binary
                    cls
clus                   0   1
  18P LOSS MUTATED    17  66
  18P LOSS WILD-TYPE  62 259
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     17   66
  18P LOSS WILD-TYPE   62  259
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                17                 62
  YES               66                259
D72V10, continuous
D72V11, continuous
D72V12, continuous

Clustering(73) Variable = 18Q LOSS MUTATION ANALYSIS
D73V1, survival
                    sevent
clus2                  0   1
  18Q LOSS MUTATED   100  70
  18Q LOSS WILD-TYPE 147  82
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               170                229 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                70                 82 
$`18Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6870 
       15.19         9.30        20.48        53.79         6.25        14.83 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DB 
       12.62         3.72         7.76        29.42        16.87         7.10 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BB-4224 TCGA-BB-7862 TCGA-BB-7872 TCGA-BB-8601 
        5.69         5.98         9.14        17.62        14.33        20.52 
TCGA-C9-A47Z TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        0.16        23.70        15.95         4.67        14.86        20.15 
TCGA-CN-4730 TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5355 
       15.19        21.11        17.79        34.68        26.66        16.04 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5370 TCGA-CN-5373 
        8.32        16.21        11.84        11.57         8.52        22.45 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6994 TCGA-CN-6995 
       14.73        13.94        12.85         6.64         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63W TCGA-CN-A641 
       14.20         1.51         7.40        17.29        11.44        12.07 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 
       21.50         2.93        10.42        28.60        32.38        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7064 
       32.38        13.25         4.24        14.99        26.79        45.30 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4CB TCGA-CQ-A4CG 
       33.11        16.73        31.82        11.61        17.92        12.85 
TCGA-CR-5247 TCGA-CR-6474 TCGA-CR-6484 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7373 
       11.77        18.54        11.64         9.27        39.16        29.23 
TCGA-CR-7374 TCGA-CR-7377 TCGA-CR-7386 TCGA-CR-7399 TCGA-CR-7402 TCGA-CV-5435 
        0.99         9.17        47.01         5.95        29.95        47.28 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       17.95       107.51        94.88        80.12        17.06        13.35 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6933 
       86.83        48.59        60.49        43.23        54.74        90.12 
TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6945 TCGA-CV-6948 
        9.70        20.52        26.43       126.08        12.03        42.38 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6960 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       53.95        65.82        28.34        64.83       126.15       111.16 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7235 
       18.81        12.66         5.26        12.92        10.75        56.68 
TCGA-CV-7236 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7253 
        4.73        31.36        26.20        18.97        17.13        11.87 
TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7416 TCGA-CV-7423 
        2.10        18.41        35.54        17.85        25.08       100.57 
TCGA-CV-7424 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       14.89         3.52        16.27        84.49        19.76         7.17 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6823 
        6.38        22.19         7.79        27.22        25.41        23.05 
TCGA-D6-6825 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 
       16.14         3.48         3.68        58.45        16.96        33.86 
TCGA-DQ-7588 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I 
       14.04        10.65        18.54        21.63         0.49         3.02 
TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43         0.20         1.91         4.37         0.07 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8635 TCGA-IQ-7630 TCGA-IQ-A61E TCGA-IQ-A61G 
        1.22         1.81         0.82        15.95        19.33        11.84 
TCGA-IQ-A61H TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W 
       13.55        11.54        11.84         7.36         6.90         0.46 
TCGA-MT-A51X TCGA-MT-A67D TCGA-P3-A5QA TCGA-P3-A6T0 TCGA-P3-A6T4 TCGA-P3-A6T5 
        1.12         1.84        54.31        19.00         2.04        29.00 
TCGA-P3-A6T8 TCGA-QK-A64Z 
       13.15        18.18 

$`18Q LOSS WILD-TYPE`
TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       13.64        37.28         9.07         8.15        23.74        42.35 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6871 
       57.93        17.10        23.84        57.44        21.17         2.07 
TCGA-BA-A6DA TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 
       11.54         7.82         6.15        94.62         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       18.35        10.19        13.91        22.59        20.98        37.91 
TCGA-BB-7871 TCGA-BB-8596 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4729 TCGA-CN-4731 
       14.07        71.05         0.13        26.27        12.89        32.65 
TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 
       21.11        12.99        14.33        41.69        13.05        16.83 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5365 TCGA-CN-5369 TCGA-CN-5374 
        5.69        12.39        35.54        11.54        12.49         9.53 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6020 
       20.68        14.24        10.39        20.68         1.48         3.22 
TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        9.07        13.94         7.36        10.45        20.09        12.95 
TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A642 TCGA-CQ-5323 
       13.08        14.70        15.91         5.75         2.70        48.20 
TCGA-CQ-5324 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 
       39.68        54.58        46.75        29.46        45.99        11.21 
TCGA-CQ-5334 TCGA-CQ-6221 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 
        4.24        32.88        48.03        43.04        29.62        28.83 
TCGA-CQ-A4C9 TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 
       20.15        18.02        12.92         9.96        19.99        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.67        37.87        26.27        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       34.52        36.99        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 
       11.34         7.69        12.46        11.51        15.75        47.18 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.93        35.84         3.45         3.09        24.95 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.06        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7404 
       29.52        30.58         7.10         5.13        35.41        48.39 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5442 
      139.43        17.16       129.21       108.33        19.20        76.50 
TCGA-CV-5443 TCGA-CV-5971 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       91.53        23.05         7.07        21.07        62.43         9.60 
TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6943 
        2.14         5.46         4.73        21.90        11.24        19.79 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
       15.09        30.08         6.08        10.98         7.13         8.42 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 
        2.50         4.14         7.99         9.01         1.84        52.31 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7250 
       21.80        71.21       114.97        47.47        36.00        95.34 
TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 
        4.96        47.97        36.13        57.47       210.97        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.94         0.07        34.09 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-A45O 
       56.48       156.49        54.94       142.52        16.64        27.98 
TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 
      169.38        67.86         5.98        24.66        10.42        10.55 
TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8569 
       13.25         9.60         2.53         5.06        18.67         4.21 
TCGA-D6-A4ZB TCGA-DQ-5625 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
        3.42        35.54        18.02        18.90        25.48        20.45 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7596 TCGA-F7-8298 TCGA-F7-A50J 
        9.83        12.13        12.10        11.18        16.11        19.23 
TCGA-F7-A61S TCGA-F7-A61V TCGA-H7-7774 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8314 
        0.10        12.62        13.38         0.16         0.82         1.45 
TCGA-HD-8634 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 
        0.79         0.36         1.61         0.33         1.08        34.75 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-MT-A67A 
        4.01        14.50         0.07        14.47         5.29        12.89 
TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QE 
        3.65         3.68         8.35        29.92        15.78        23.70 
TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T6 
       10.85        36.82        47.01        63.02        18.97        12.99 
TCGA-P3-A6T7 
       16.01 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.07               0.07 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            126.15             210.97 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             15.57              17.10 
[1] "0.1 - 126.2 (15.6)" "0.1 - 211.0 (17.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
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"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
[1] "hr=" "1.3"
D73V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  18Q LOSS MUTATED        11       27        28        89         3
  18Q LOSS WILD-TYPE      13       35        38       100         5
D73V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  18Q LOSS MUTATED   18 43 36 61
  18Q LOSS WILD-TYPE 21 60 48 67
D73V4, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  T1               18                 21
  T2               43                 60
  T3               36                 48
  T4               61                 67
                    vv
clus                 N0 N1 N2 N3
  18Q LOSS MUTATED   54 27 59  3
  18Q LOSS WILD-TYPE 80 25 66  4
D73V5, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  N0               54                 80
  N1               27                 25
  N2               59                 66
  N3                3                  4
D73V6, binary
                    cls
clus                  0  1
  18Q LOSS MUTATED   42 21
  18Q LOSS WILD-TYPE 61 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     42   21
  18Q LOSS WILD-TYPE   61   22
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  M0               42                 61
  MX               21                 22
D73V7, binary
                    cls
clus                   0   1
  18Q LOSS MUTATED    43 128
  18Q LOSS WILD-TYPE  73 160
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     43  128
  18Q LOSS WILD-TYPE   73  160
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE               43                 73
  MALE                128                160
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  18Q LOSS MUTATED                                     169
  18Q LOSS WILD-TYPE                                   228
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  18Q LOSS MUTATED                                                             1
  18Q LOSS WILD-TYPE                                                           0
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  18Q LOSS MUTATED                                                     1
  18Q LOSS WILD-TYPE                                                   5
D73V8, multiclass
                                                             clus
vv                                                            18Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    169
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            18Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      228
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          5
D73V9, binary
                    cls
clus                   0   1
  18Q LOSS MUTATED    36 135
  18Q LOSS WILD-TYPE  43 190
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     36  135
  18Q LOSS WILD-TYPE   43  190
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                36                 43
  YES              135                190
D73V10, continuous
D73V11, continuous
D73V12, continuous

Clustering(74) Variable = 19P LOSS MUTATION ANALYSIS
D74V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED    38  39
  19P LOSS WILD-TYPE 209 113
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                77                322 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                39                113 
$`19P LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-5149 TCGA-BA-5153 TCGA-BA-6868 TCGA-BA-A4IF TCGA-BA-A6DA 
        9.30         8.15        57.93         6.25        29.42        11.54 
TCGA-BB-4227 TCGA-BB-8596 TCGA-C9-A47Z TCGA-CN-4725 TCGA-CN-4729 TCGA-CN-4737 
        4.37        71.05         0.16        15.95        12.89        17.79 
TCGA-CN-4738 TCGA-CN-5356 TCGA-CN-5363 TCGA-CN-5370 TCGA-CN-5374 TCGA-CN-6012 
       14.33        16.83         8.32         8.52         9.53        20.68 
TCGA-CN-6018 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        1.48         3.22         6.64        12.95         3.91         3.68 
TCGA-CN-6996 TCGA-CQ-5326 TCGA-CQ-5330 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6225 
       14.20         2.93        29.46        32.38        34.75        13.25 
TCGA-CQ-7064 TCGA-CQ-7069 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CR-6477 TCGA-CR-7364 
       45.30        29.62        11.61        20.15        16.90        47.18 
TCGA-CR-7365 TCGA-CR-7373 TCGA-CR-7377 TCGA-CR-7398 TCGA-CV-5434 TCGA-CV-5435 
       39.16        29.23         9.17         5.13       108.33        47.28 
TCGA-CV-5439 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6937 
       17.95        43.23        54.74         9.60        90.12        20.52 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6956 TCGA-CV-7095 
       26.43        11.24        12.03        15.09         7.13        18.81 
TCGA-CV-7097 TCGA-CV-7180 TCGA-CV-7254 TCGA-CV-7416 TCGA-CV-7429 TCGA-CV-7430 
       12.66        10.75        47.97        25.08         3.52        16.27 
TCGA-CV-7440 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-7588 
       22.19        16.14         5.06         4.21        58.45        14.04 
TCGA-DQ-7592 TCGA-F7-7848 TCGA-F7-A50I TCGA-F7-A61W TCGA-HD-7753 TCGA-HL-7533 
        9.83        18.54         3.02         0.46         0.16        34.75 
TCGA-IQ-A61G TCGA-IQ-A61I TCGA-IQ-A61L TCGA-MT-A51X TCGA-P3-A6SX 
       11.84         0.07        11.54         1.12        47.01 

$`19P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 
       15.19        13.64        37.28         9.07        23.74        42.35 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 
       17.10        23.84        20.48        53.79        57.44        21.17 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6D8 
       14.83         2.07        12.62         3.72         7.76        16.87 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 
        7.10         5.69         5.98         7.82         6.15        94.62 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        9.14         4.60        18.35        10.19        17.62        13.91 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8601 
       22.59        20.98        37.91        14.07        14.33        20.52 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        0.13        26.27        23.70         4.67        14.86        20.15 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4739 
       15.19        32.65        21.11        21.11        12.99        34.68 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 
       26.66        41.69        13.05        16.04         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       35.54        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       22.45        14.73        13.94        14.24        10.39        20.68 
TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
       12.85         9.07        13.94         7.36        10.45        20.09 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V 
       13.08         1.51        14.70         7.40        17.29        15.91 
TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 
       11.44         5.75        12.07         2.70        48.20        39.68 
TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       21.50        54.58        46.75        45.99        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 
        4.24        28.60        32.88        32.38         4.24        14.99 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7071 
       26.79        48.03        33.11        16.73        43.04        28.83 
TCGA-CQ-A4C6 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH 
       31.82        17.92        18.02        12.92        12.85         9.96 
TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       19.99        84.23        11.77        54.67        37.87        26.27 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.54 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.69 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7367 TCGA-CR-7368 
       12.46        11.51        15.75         9.27        47.34        40.93 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 
       35.84         3.45         3.09        24.95         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.06        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.58         7.10         5.95        35.41        29.95 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5440 
       48.39       139.43        17.16       129.21        19.20       107.51 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       94.88        76.50        91.53        80.12        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6433 
       23.05        86.83        48.59        60.49         7.07        21.07 
TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 
       62.43         2.14         9.70         5.46         4.73        21.90 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
      126.08        19.79        42.38        30.08         6.08        53.95 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       65.82        10.98         8.42        28.34         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
       64.83       126.15       111.16         7.99         9.01         5.26 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 
        1.84        52.31        12.92        21.80        71.21       114.97 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.36        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       18.97        17.13        95.34         4.96        11.87         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        57.47        35.54        17.85       210.97 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        22.85        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.57        14.89        56.48       156.49        54.94 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.76         7.17       142.52        16.64         6.38 
TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 
       27.98       169.38        67.86         5.98        24.66        10.42 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.79        27.22        13.25        25.41         9.60 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
       23.05         2.53        18.67         3.48         3.68         3.42 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 
       35.54        16.96        33.86        18.02        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8298 
       20.45        12.13        12.10        10.65        11.18        16.11 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A620 
       21.63         0.49        19.23         0.10        12.62         0.43 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 
        0.20        13.38         1.91         4.37         0.07         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 
        1.22         1.81         1.45         0.79         0.82         0.36 
TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.61         0.33         1.08        15.95         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66S 
       19.33        13.55        14.47         5.29        11.84         7.36 
TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G 
        6.90         0.46        12.89         1.84         3.65         3.68 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        8.35        29.92        15.78        54.31        23.70        10.85 
TCGA-P3-A6SW TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 
       36.82        19.00        63.02        18.97         2.04        29.00 
TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       12.99        16.01        13.15        18.18 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              0.07               0.07 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            108.33             210.97 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             14.04              17.01 
[1] "0.1 - 108.3 (14.0)" "0.1 - 211.0 (17.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D74V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  19P LOSS MUTATED         2       12        19        35         1
  19P LOSS WILD-TYPE      22       50        47       154         7
D74V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19P LOSS MUTATED     4  24  19  23
  19P LOSS WILD-TYPE  35  79  65 105
D74V4, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  T1                4                 35
  T2               24                 79
  T3               19                 65
  T4               23                105
                    vv
clus                  N0  N1  N2  N3
  19P LOSS MUTATED    22  15  24   1
  19P LOSS WILD-TYPE 112  37 101   6
D74V5, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  N0               22                112
  N1               15                 37
  N2               24                101
  N3                1                  6
D74V6, binary
                    cls
clus                  0  1
  19P LOSS MUTATED   23  4
  19P LOSS WILD-TYPE 80 39
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     23    4
  19P LOSS WILD-TYPE   80   39
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  M0               23                 80
  MX                4                 39
D74V7, binary
                    cls
clus                   0   1
  19P LOSS MUTATED    18  59
  19P LOSS WILD-TYPE  98 229
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     18   59
  19P LOSS WILD-TYPE   98  229
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE               18                 98
  MALE                 59                229
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  19P LOSS MUTATED                                      77
  19P LOSS WILD-TYPE                                   320
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  19P LOSS MUTATED                                                             0
  19P LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  19P LOSS MUTATED                                                     0
  19P LOSS WILD-TYPE                                                   6
D74V8, multiclass
                                                             clus
vv                                                            19P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     77
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            19P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      320
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D74V9, binary
                    cls
clus                   0   1
  19P LOSS MUTATED    19  58
  19P LOSS WILD-TYPE  60 267
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     19   58
  19P LOSS WILD-TYPE   60  267
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                19                 60
  YES               58                267
D74V10, continuous
D74V11, continuous
D74V12, continuous

Clustering(75) Variable = 19Q LOSS MUTATION ANALYSIS
D75V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED    36  29
  19Q LOSS WILD-TYPE 211 123
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                65                334 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                29                123 
$`19Q LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-5149 TCGA-BA-5555 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 
        9.30         8.15        17.10         6.25        14.83         2.07 
TCGA-BA-6873 TCGA-BA-A4IF TCGA-BA-A6DA TCGA-BB-4227 TCGA-BB-8596 TCGA-BB-8601 
        3.72        29.42        11.54         4.37        71.05        20.52 
TCGA-C9-A47Z TCGA-CN-4725 TCGA-CN-4737 TCGA-CN-5356 TCGA-CN-5363 TCGA-CN-5374 
        0.16        15.95        17.79        16.83         8.32         9.53 
TCGA-CN-6018 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 
        1.48        20.09        12.95         3.91        14.20        13.08 
TCGA-CQ-5326 TCGA-CQ-6220 TCGA-CQ-7064 TCGA-CQ-7069 TCGA-CQ-A4C7 TCGA-CQ-A4C9 
        2.93        32.38        45.30        29.62        11.61        20.15 
TCGA-CQ-A4CI TCGA-CR-6477 TCGA-CR-7365 TCGA-CR-7373 TCGA-CR-7377 TCGA-CR-7398 
       19.99        16.90        39.16        29.23         9.17         5.13 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5979 TCGA-CV-6003 
      129.21       108.33        47.28        17.95        43.23        54.74 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6956 TCGA-CV-6960 
        9.60        90.12        26.43        11.24         7.13        28.34 
TCGA-CV-7097 TCGA-CV-7180 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7416 TCGA-CV-7429 
       12.66        10.75        47.97        36.13        25.08         3.52 
TCGA-CV-7430 TCGA-D6-6517 TCGA-D6-6826 TCGA-D6-8569 TCGA-DQ-7588 TCGA-F7-A61W 
       16.27         9.60         5.06         4.21        14.04         0.46 
TCGA-HD-7753 TCGA-IQ-A61I TCGA-IQ-A61L TCGA-MT-A51X TCGA-P3-A6T2 
        0.16         0.07        11.54         1.12        63.02 

$`19Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 
       15.19        13.64        37.28         9.07        23.74        42.35 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 
       57.93        23.84        20.48        53.79        57.44        21.17 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       12.62         7.76        16.87         7.10         5.69         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 
        7.82         6.15        94.62         9.14         4.60        18.35 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.62        13.91        22.59        20.98        37.91 
TCGA-BB-7871 TCGA-BB-7872 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 
       14.07        14.33         0.13        26.27        23.70         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
       14.86        20.15        12.89        15.19        32.65        21.11 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       21.11        12.99        14.33        34.68        26.66        41.69 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 
       13.05        16.04         5.69        12.39        35.54        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        22.45 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       14.73        13.94        20.68        14.24        10.39        20.68 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
       12.85         3.22         9.07         6.64        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6995 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U 
       10.45         3.68         1.51        14.70         7.40        17.29 
TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 
       15.91        11.44         5.75        12.07         2.70        48.20 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       39.68        21.50        54.58        46.75        29.46        45.99 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 
       10.42        11.21         4.24        28.60        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.38        13.25         4.24        14.99        26.79        48.03 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4CB 
       33.11        16.73        43.04        28.83        31.82        17.92 
TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CR-5243 TCGA-CR-5247 
       18.02        12.92        12.85         9.96        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.67        37.87        26.27        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       34.52        36.99        18.54         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.69        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
        9.27        47.18        47.34        40.93        35.84         3.45 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
        3.09        24.95         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.06        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.58 
TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        7.10         5.95        35.41        29.95        48.39       139.43 
TCGA-CV-5431 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       17.16        19.20       107.51        94.88        76.50        91.53 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       80.12        17.06        13.35        23.05        86.83        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 
       60.49         7.07        21.07        62.43         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 
        5.46        20.52         4.73        21.90       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.38        15.09        30.08         6.08        53.95 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
       65.82        10.98         8.42         2.50         4.14        64.83 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      126.15       111.16        18.81         7.99         9.01         5.26 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 
        1.84        52.31        12.92        21.80        71.21       114.97 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.36        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       18.97        17.13        95.34         4.96        11.87         2.10 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.85       210.97        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7432 
      100.57        14.89        56.48       156.49        54.94        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.76         7.17       142.52        16.64         6.38        22.19 
TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 
       27.98       169.38        67.86         5.98        24.66        10.42 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6823 
       10.55         7.79        27.22        13.25        25.41        23.05 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
        2.53        16.14        18.67         3.48         3.68         3.42 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 
       58.45        35.54        16.96        33.86        18.02        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       25.48        20.45         9.83        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I 
       11.18        18.54        16.11        21.63         0.49         3.02 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 
       19.23         0.10        12.62         0.43         0.20        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        1.91         4.37         0.07         0.82         1.22         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 
        1.45         0.79         0.82         0.36         1.61         0.33 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
        1.08        34.75        15.95         4.01        14.50        19.33 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66S 
       11.84        13.55        14.47         5.29        11.84         7.36 
TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G 
        6.90         0.46        12.89         1.84         3.65         3.68 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        8.35        29.92        15.78        54.31        23.70        10.85 
TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 
       36.82        47.01        19.00        18.97         2.04        29.00 
TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       12.99        16.01        13.15        18.18 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              0.07               0.07 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
            129.21             210.97 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             14.04              16.80 
[1] "0.1 - 129.2 (14.0)" "0.1 - 211.0 (16.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
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        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D75V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  19Q LOSS MUTATED         1        8        18        31         1
  19Q LOSS WILD-TYPE      23       54        48       158         7
D75V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19Q LOSS MUTATED     3  17  21  18
  19Q LOSS WILD-TYPE  36  86  63 110
D75V4, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  T1                3                 36
  T2               17                 86
  T3               21                 63
  T4               18                110
                    vv
clus                  N0  N1  N2  N3
  19Q LOSS MUTATED    18  11  24   1
  19Q LOSS WILD-TYPE 116  41 101   6
D75V5, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  N0               18                116
  N1               11                 41
  N2               24                101
  N3                1                  6
D75V6, binary
                    cls
clus                  0  1
  19Q LOSS MUTATED   18  4
  19Q LOSS WILD-TYPE 85 39
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED     18    4
  19Q LOSS WILD-TYPE   85   39
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  M0               18                 85
  MX                4                 39
D75V7, binary
                    cls
clus                   0   1
  19Q LOSS MUTATED    16  49
  19Q LOSS WILD-TYPE 100 239
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED     16   49
  19Q LOSS WILD-TYPE  100  239
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE               16                100
  MALE                 49                239
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  19Q LOSS MUTATED                                      64
  19Q LOSS WILD-TYPE                                   333
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  19Q LOSS MUTATED                                                             0
  19Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  19Q LOSS MUTATED                                                     1
  19Q LOSS WILD-TYPE                                                   5
D75V8, multiclass
                                                             clus
vv                                                            19Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     64
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            19Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      333
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          5
D75V9, binary
                    cls
clus                   0   1
  19Q LOSS MUTATED    15  50
  19Q LOSS WILD-TYPE  64 275
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED     15   50
  19Q LOSS WILD-TYPE   64  275
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                15                 64
  YES               50                275
D75V10, continuous
D75V11, continuous
D75V12, continuous

Clustering(76) Variable = 20P LOSS MUTATION ANALYSIS
D76V1, survival
                    sevent
clus2                  0   1
  20P LOSS MUTATED    26  16
  20P LOSS WILD-TYPE 221 136
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                42                357 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                16                136 
$`20P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5152 TCGA-BA-5555 
       15.19         9.30        13.64        37.28        42.35        17.10 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-4227 TCGA-BB-7866 TCGA-BB-8601 
       14.83         2.07         3.72         4.37        20.98        20.52 
TCGA-CN-6011 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-A63W TCGA-CQ-A4CD 
       13.94        12.95         3.91         3.68        11.44        18.02 
TCGA-CQ-A4CG TCGA-CR-6474 TCGA-CR-6478 TCGA-CR-7364 TCGA-CR-7374 TCGA-CR-7379 
       12.85        18.54         6.02        47.18         0.99        34.06 
TCGA-CR-7383 TCGA-CV-5440 TCGA-CV-7091 TCGA-CV-7101 TCGA-CV-7104 TCGA-CV-7235 
       17.13       107.51       111.16         5.26        12.92        56.68 
TCGA-CV-7247 TCGA-CV-7254 TCGA-CV-7407 TCGA-CV-7418 TCGA-CV-7435 TCGA-D6-6823 
       18.97        47.97        35.54        25.94       142.52        23.05 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-A623 TCGA-HD-7917 
       18.90        25.48        18.54        16.11         0.20         1.22 

$`20P LOSS WILD-TYPE`
TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 
        9.07         8.15        23.74        57.93        23.84        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-7269 
       53.79        57.44         6.25        21.17        12.62         7.76 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       29.42        16.87        11.54         7.10         5.69         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 
        7.82         6.15        94.62         9.14         4.60        18.35 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7870 TCGA-BB-7871 
       10.19        17.62        13.91        22.59        37.91        14.07 
TCGA-BB-7872 TCGA-BB-8596 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       14.33        71.05         0.16         0.13        26.27        23.70 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       15.95         4.67        14.86        20.15        12.89        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       32.65        21.11        21.11        12.99        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       34.68        26.66        41.69        13.05        16.04        16.83 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        35.54         8.32        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        22.45         9.53 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       14.73        20.68        14.24        10.39        20.68         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
       12.85         3.22         9.07         6.64        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
       10.45        20.09        14.20        13.08         1.51        14.70 
TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 
        7.40        17.29        15.91         5.75        12.07         2.70 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.20        39.68        21.50         2.93        54.58        46.75 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        45.99        10.42        11.21         4.24        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.38        32.88        34.75        32.38        13.25         4.24 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.99        26.79        48.03        45.30        33.11        16.73 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 
       43.04        29.62        28.83        31.82        11.61        20.15 
TCGA-CQ-A4CB TCGA-CQ-A4CE TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 
       17.92        12.92         9.96        19.99        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.67        37.87        26.27        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       34.52        36.99        16.90        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.69        12.46        11.51        15.75         9.27 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.16        47.34        40.93        35.84         3.45         3.09 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7382 
       24.95        29.23        31.96         9.17        19.92        26.17 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.06        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.58         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.95        35.41        29.95        48.39       139.43        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 
      129.21       108.33        47.28        19.20        17.95        94.88 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.50        91.53        80.12        17.06        13.35        23.05 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       86.83        48.59        60.49         7.07        43.23        54.74 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       21.07        62.43         9.60        90.12         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.73        21.90        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.38        15.09        30.08 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.95        65.82        10.98         7.13         8.42 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 
       28.34         2.50         4.14        64.83       126.15        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 
       12.66         7.99         9.01         1.84        52.31        21.80 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       71.21        10.75       114.97         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       31.36        26.20        17.13        95.34         4.96        11.87 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 
        2.10        36.13        18.41        57.47        17.85       210.97 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 
       89.33         9.67         0.46        22.85        25.08         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.57        14.89        56.48       156.49        54.94 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 
        3.52        16.27        84.49        19.76         7.17        16.64 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD 
        6.38        22.19        27.98       169.38        67.86         5.98 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       24.66        10.42        10.55         7.79        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
       25.41         9.60         2.53        16.14         5.06        18.67 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 
        3.48         4.21         3.68         3.42        58.45        35.54 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 
       16.96        33.86        18.02        14.04        20.45         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8489 TCGA-F7-A50G 
       12.13        12.10        10.65        11.18        21.63         0.49 
TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 
        3.02        19.23         0.10        12.62         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
       13.38         1.91         4.37         0.07         0.16         0.82 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 
        1.81         1.45         0.79         0.82         0.36         1.61 
TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.33         1.08        34.75        15.95         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K 
       19.33        11.84        13.55         0.07        14.47         5.29 
TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X 
       11.54        11.84         7.36         6.90         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 
       12.89         1.84         3.65         3.68         8.35        29.92 
TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX 
       15.78        54.31        23.70        10.85        36.82        47.01 
TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 
       19.00        63.02        18.97         2.04        29.00        12.99 
TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       16.01        13.15        18.18 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              0.20               0.07 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            142.52             210.97 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            17.115             16.040 
[1] "0.2 - 142.5 (17.1)" "0.1 - 211.0 (16.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "20P LOSS MUTATED"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "20P LOSS MUTATED"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D76V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  20P LOSS MUTATED         3        6         5        20         0
  20P LOSS WILD-TYPE      21       56        61       169         8
D76V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20P LOSS MUTATED     4   9   8  13
  20P LOSS WILD-TYPE  35  94  76 115
D76V4, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  T1                4                 35
  T2                9                 94
  T3                8                 76
  T4               13                115
                    vv
clus                  N0  N1  N2  N3
  20P LOSS MUTATED    16   2  13   0
  20P LOSS WILD-TYPE 118  50 112   7
D76V5, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  N0               16                118
  N1                2                 50
  N2               13                112
  N3                0                  7
D76V6, binary
                    cls
clus                  0  1
  20P LOSS MUTATED   13  2
  20P LOSS WILD-TYPE 90 41
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED     13    2
  20P LOSS WILD-TYPE   90   41
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  M0               13                 90
  MX                2                 41
D76V7, binary
                    cls
clus                   0   1
  20P LOSS MUTATED    11  31
  20P LOSS WILD-TYPE 105 257
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED     11   31
  20P LOSS WILD-TYPE  105  257
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE               11                105
  MALE                 31                257
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  20P LOSS MUTATED                                      42
  20P LOSS WILD-TYPE                                   355
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  20P LOSS MUTATED                                                             0
  20P LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  20P LOSS MUTATED                                                     0
  20P LOSS WILD-TYPE                                                   6
D76V8, multiclass
                                                             clus
vv                                                            20P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     42
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            20P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      355
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D76V9, binary
                    cls
clus                   0   1
  20P LOSS MUTATED     9  33
  20P LOSS WILD-TYPE  70 292
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      9   33
  20P LOSS WILD-TYPE   70  292
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 9                 70
  YES               33                292
D76V10, continuous
D76V11, continuous
D76V12, continuous

Clustering(77) Variable = 20Q LOSS MUTATION ANALYSIS
D77V1, survival
                    sevent
clus2                  0   1
  20Q LOSS MUTATED    16   9
  20Q LOSS WILD-TYPE 231 143
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                25                374 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 9                143 
$`20Q LOSS MUTATED`
TCGA-BA-5152 TCGA-BA-6870 TCGA-BA-6871 TCGA-BB-7866 TCGA-BB-8601 TCGA-CN-4729 
       42.35        14.83         2.07        20.98        20.52        12.89 
TCGA-CN-5360 TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-6473 TCGA-CR-7370 TCGA-CR-7383 
       35.54        19.99        84.23        36.99         3.45        17.13 
TCGA-CR-7402 TCGA-CV-5440 TCGA-CV-7091 TCGA-CV-7101 TCGA-CV-7235 TCGA-CV-7247 
       29.95       107.51       111.16         5.26        56.68        18.97 
TCGA-CV-7254 TCGA-CV-7407 TCGA-CV-7418 TCGA-CV-7435 TCGA-D6-6826 TCGA-DQ-7590 
       47.97        35.54        25.94       142.52         5.06        25.48 
TCGA-HD-7917 
        1.22 

$`20Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.19         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       23.74        57.93        17.10        23.84        20.48        53.79 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         6.25        21.17        12.62         3.72         7.76 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       29.42        16.87        11.54         7.10         5.69         5.98 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.82         6.15        94.62         9.14         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7870 
       18.35        10.19        17.62        13.91        22.59        37.91 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       14.07        14.33        71.05         0.16         0.13        26.27 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 
       23.70        15.95         4.67        14.86        20.15        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       32.65        21.11        21.11        12.99        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       34.68        26.66        41.69        13.05        16.04        16.83 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        5.69        12.39         8.32        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        22.45         9.53        14.73 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       13.94        20.68        14.24        10.39        20.68         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
       12.85         3.22         9.07         6.64        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
       10.45        20.09        12.95         3.91         3.68        14.20 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V 
       13.08         1.51        14.70         7.40        17.29        15.91 
TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 
       11.44         5.75        12.07         2.70        48.20        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        54.58        46.75        29.46        45.99 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.24        28.60        32.38        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.38        13.25         4.24        14.99        26.79 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.30        33.11        16.73        43.04        29.62 
TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD 
       28.83        31.82        11.61        20.15        17.92        18.02 
TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       12.92        12.85         9.96        11.77        54.67        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 
       26.27        58.42        50.01        39.52        34.52        18.54 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.69        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 
       39.16        47.34        40.93        35.84         3.09        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       26.17        32.78        47.01        27.06        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.58         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.13         5.95        35.41        48.39       139.43        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 
      129.21       108.33        47.28        19.20        17.95        94.88 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.50        91.53        80.12        17.06        13.35        23.05 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       86.83        48.59        60.49         7.07        43.23        54.74 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       21.07        62.43         9.60        90.12         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.73        21.90        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.38        15.09        30.08 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.95        65.82        10.98         7.13         8.42 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 
       28.34         2.50         4.14        64.83       126.15        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
       12.66         7.99         9.01         1.84        52.31        12.92 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 
       21.80        71.21        10.75       114.97         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        31.36        26.20        17.13        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 
       11.87         2.10        36.13        18.41        57.47        17.85 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.97        89.33         9.67         0.46        22.85        25.08 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.57        14.89        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.94         3.52        16.27        84.49        19.76         7.17 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 
       16.64         6.38        22.19        27.98       169.38        67.86 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        5.98        24.66        10.42        10.55         7.79        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        25.41         9.60        23.05         2.53        16.14 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
       18.67         3.48         4.21         3.68         3.42        58.45 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       35.54        16.96        33.86        18.02        14.04        18.90 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       20.45         9.83        12.13        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J 
       18.54        16.11        21.63         0.49         3.02        19.23 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 
        0.10        12.62         0.46         0.43         0.20        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 
        1.91         4.37         0.07         0.16         0.82         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 
        1.45         0.79         0.82         0.36         1.61         0.33 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
        1.08        34.75        15.95         4.01        14.50        19.33 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L 
       11.84        13.55         0.07        14.47         5.29        11.54 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
       11.84         7.36         6.90         0.46         1.12        12.89 
TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 
        1.84         3.65         3.68         8.35        29.92        15.78 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 
       54.31        23.70        10.85        36.82        47.01        19.00 
TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 
       63.02        18.97         2.04        29.00        12.99        16.01 
TCGA-P3-A6T8 TCGA-QK-A64Z 
       13.15        18.18 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              1.22               0.07 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
            142.52             210.97 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             25.48              15.93 
[1] "1.2 - 142.5 (25.5)" "0.1 - 211.0 (15.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED"   "20Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED"   "20Q LOSS MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
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"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED"   "20Q LOSS MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D77V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  20Q LOSS MUTATED         2        5         4         6         0
  20Q LOSS WILD-TYPE      22       57        62       183         8
D77V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20Q LOSS MUTATED     2   7   3   5
  20Q LOSS WILD-TYPE  37  96  81 123
D77V4, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  T1                2                 37
  T2                7                 96
  T3                3                 81
  T4                5                123
                    vv
clus                  N0  N1  N2  N3
  20Q LOSS MUTATED     7   3   4   0
  20Q LOSS WILD-TYPE 127  49 121   7
D77V5, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  N0                7                127
  N1                3                 49
  N2                4                121
  N3                0                  7
D77V6, binary
                    cls
clus                  0  1
  20Q LOSS MUTATED    4  1
  20Q LOSS WILD-TYPE 99 42
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      4    1
  20Q LOSS WILD-TYPE   99   42
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  M0                4                 99
  MX                1                 42
D77V7, binary
                    cls
clus                   0   1
  20Q LOSS MUTATED     6  19
  20Q LOSS WILD-TYPE 110 269
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      6   19
  20Q LOSS WILD-TYPE  110  269
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  FEMALE                6                110
  MALE                 19                269
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  20Q LOSS MUTATED                                      24
  20Q LOSS WILD-TYPE                                   373
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  20Q LOSS MUTATED                                                             0
  20Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  20Q LOSS MUTATED                                                     1
  20Q LOSS WILD-TYPE                                                   5
D77V8, multiclass
                                                             clus
vv                                                            20Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     24
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            20Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      373
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          5
D77V9, binary
                    cls
clus                   0   1
  20Q LOSS MUTATED     4  21
  20Q LOSS WILD-TYPE  75 304
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      4   21
  20Q LOSS WILD-TYPE   75  304
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 4                 75
  YES               21                304
D77V10, continuous
D77V11, continuous
D77V12, continuous

Clustering(78) Variable = 21Q LOSS MUTATION ANALYSIS
D78V1, survival
                    sevent
clus2                  0   1
  21Q LOSS MUTATED    90  61
  21Q LOSS WILD-TYPE 157  91
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               151                248 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                61                 91 
$`21Q LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 
        9.30        53.79        57.44         6.25        14.83         2.07 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-8596 TCGA-BB-8601 
       16.87        11.54        17.62        22.59        71.05        20.52 
TCGA-C9-A47Z TCGA-CN-4725 TCGA-CN-4728 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
        0.16        15.95        20.15        12.99        14.33        34.68 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5370 TCGA-CN-5374 
       41.69        13.05         8.32        11.54         8.52         9.53 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6022 
       14.73        20.68         1.48        12.85         9.07         6.64 
TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T 
        3.91        14.20        13.08         1.51        14.70         7.40 
TCGA-CN-A63W TCGA-CQ-5323 TCGA-CQ-5326 TCGA-CQ-5330 TCGA-CQ-5332 TCGA-CQ-6220 
       11.44        48.20         2.93        29.46        10.42        32.38 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6229 TCGA-CQ-7064 TCGA-CQ-7065 
       34.75        32.38        13.25        26.79        45.30        33.11 
TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CE 
       16.73        29.62        31.82        11.61        20.15        12.92 
TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5247 TCGA-CR-6477 TCGA-CR-6484 TCGA-CR-6491 
        9.96        19.99        11.77        16.90        11.64        11.51 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 
       39.16        47.34        35.84         3.45         3.09        29.23 
TCGA-CR-7388 TCGA-CR-7399 TCGA-CV-5431 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5444 
       27.06         5.95        17.16        17.95       107.51        80.12 
TCGA-CV-5966 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       17.06        48.59        60.49         7.07        43.23        54.74 
TCGA-CV-6934 TCGA-CV-6937 TCGA-CV-6941 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6959 
        2.14        20.52        11.24        65.82         7.13         8.42 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 
        2.50         4.14        64.83       126.15       111.16        12.66 
TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7235 
        5.26        52.31        12.92        21.80        10.75        56.68 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7254 TCGA-CV-7261 
       36.00        26.20        18.97        17.13        47.97        36.13 
TCGA-CV-7263 TCGA-CV-7409 TCGA-CV-7416 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       18.41        17.85        25.08        34.09       100.57        14.89 
TCGA-CV-7432 TCGA-CV-7435 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7086 TCGA-CX-7219 
       84.49       142.52        22.19        10.42         7.79        27.22 
TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6826 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
       25.41        23.05         5.06         3.68         3.42        58.45 
TCGA-DQ-5629 TCGA-DQ-7588 TCGA-DQ-7592 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J 
       16.96        14.04         9.83         0.49         3.02        19.23 
TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.46         0.43         1.91         4.37         0.07         0.16 
TCGA-HD-8634 TCGA-HD-A633 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J 
        0.79         1.61        19.33        11.84        13.55        14.47 
TCGA-IQ-A61L TCGA-KU-A66T TCGA-MT-A51X TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QF 
       11.54         6.90         1.12        15.78        54.31        10.85 
TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 
       47.01        19.00        63.02        18.97         2.04        29.00 
TCGA-P3-A6T8 
       13.15 

$`21Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.19        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-6869 
       42.35        57.93        17.10        23.84        20.48        21.17 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6DB TCGA-BA-A6DD 
       12.62         3.72         7.76        29.42         7.10         5.69 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.98         7.82         6.15        94.62         9.14         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 
        4.37        18.35        10.19        13.91        20.98        37.91 
TCGA-BB-7871 TCGA-BB-7872 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 
       14.07        14.33         0.13        26.27        23.70         4.67 
TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       14.86        12.89        15.19        32.65        21.11        21.11 
TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       17.79        26.66        16.04        16.83         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5373 
       35.54        16.21        11.84        11.57        12.49        22.45 
TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6020 TCGA-CN-6023 
       13.94        14.24        10.39        20.68         3.22        13.94 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-A63U 
        7.36        10.45        20.09        12.95         3.68        17.29 
TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5324 TCGA-CQ-5325 
       15.91         5.75        12.07         2.70        39.68        21.50 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       54.58        46.75        45.99        11.21         4.24        28.60 
TCGA-CQ-6221 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CQ-7071 
       32.88         4.24        14.99        48.03        43.04        28.83 
TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CG TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       17.92        18.02        12.85        84.23        54.67        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.27        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 
       18.54         6.02        11.90        10.22        11.34         7.69 
TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7372 
       12.46        15.75         9.27        47.18        40.93        24.95 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       17.13        32.78        47.01        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.58         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 
       35.41        29.95        48.39       139.43       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5970 
       47.28        19.20        94.88        76.50        91.53        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       23.05        86.83        21.07        62.43         9.60        90.12 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 
        9.70         5.46         4.73        21.90        26.43       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.38        15.09        30.08         6.08 
TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6960 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 
       53.95        10.98        28.34        18.81         7.99         9.01 
TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 
        1.84        71.21       114.97         4.73        47.47        31.36 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7406 TCGA-CV-7407 
       95.34         4.96        11.87         2.10        57.47        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 
      210.97        89.33         9.67         0.46        22.85        25.94 
TCGA-CV-7421 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
        0.07        56.48       156.49        54.94         3.52        16.27 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-A45O TCGA-CV-A45Q 
       19.76         7.17        16.64         6.38        27.98       169.38 
TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6517 
       67.86         5.98        24.66        10.55        13.25         9.60 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5625 
        2.53        16.14        18.67         3.48         4.21        35.54 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 
       33.86        18.02        18.90        25.48        20.45        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.10        10.65        11.18        18.54        16.11        21.63 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A623 TCGA-H7-7774 TCGA-HD-7754 TCGA-HD-7917 
        0.10        12.62         0.20        13.38         0.82         1.22 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A634 TCGA-HD-A6I0 
        1.81         1.45         0.82         0.36         0.33         1.08 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61I TCGA-IQ-A61K 
       34.75        15.95         4.01        14.50         0.07         5.29 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
       11.84         7.36         0.46        12.89         1.84         3.65 
TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QE TCGA-P3-A6SW TCGA-P3-A6T6 
        3.68         8.35        29.92        23.70        36.82        12.99 
TCGA-P3-A6T7 TCGA-QK-A64Z 
       16.01        18.18 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.07               0.07 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            142.52             210.97 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             15.78              16.24 
[1] "0.1 - 142.5 (15.8)" "0.1 - 211.0 (16.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D78V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  21Q LOSS MUTATED         7       26        26        75         4
  21Q LOSS WILD-TYPE      17       36        40       114         4
D78V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  21Q LOSS MUTATED    9 43 37 50
  21Q LOSS WILD-TYPE 30 60 47 78
D78V4, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  T1                9                 30
  T2               43                 60
  T3               37                 47
  T4               50                 78
                    vv
clus                 N0 N1 N2 N3
  21Q LOSS MUTATED   47 23 50  4
  21Q LOSS WILD-TYPE 87 29 75  3
D78V5, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  N0               47                 87
  N1               23                 29
  N2               50                 75
  N3                4                  3
D78V6, binary
                    cls
clus                  0  1
  21Q LOSS MUTATED   38 23
  21Q LOSS WILD-TYPE 65 20
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     38   23
  21Q LOSS WILD-TYPE   65   20
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  M0               38                 65
  MX               23                 20
D78V7, binary
                    cls
clus                   0   1
  21Q LOSS MUTATED    42 111
  21Q LOSS WILD-TYPE  74 177
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     42  111
  21Q LOSS WILD-TYPE   74  177
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE               42                 74
  MALE                111                177
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  21Q LOSS MUTATED                                     152
  21Q LOSS WILD-TYPE                                   245
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  21Q LOSS MUTATED                                                             0
  21Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  21Q LOSS MUTATED                                                     1
  21Q LOSS WILD-TYPE                                                   5
D78V8, multiclass
                                                             clus
vv                                                            21Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    152
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            21Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      245
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          5
D78V9, binary
                    cls
clus                   0   1
  21Q LOSS MUTATED    27 126
  21Q LOSS WILD-TYPE  52 199
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     27  126
  21Q LOSS WILD-TYPE   52  199
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                27                 52
  YES              126                199
D78V10, continuous
D78V11, continuous
D78V12, continuous

Clustering(79) Variable = 22Q LOSS MUTATION ANALYSIS
D79V1, survival
                    sevent
clus2                  0   1
  22Q LOSS MUTATED    42  19
  22Q LOSS WILD-TYPE 205 133
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                61                338 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                19                133 
$`22Q LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-5149 TCGA-BA-5558 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-A6DE 
        9.30         8.15        53.79        14.83         2.07         5.98 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-7861 TCGA-C9-A47Z TCGA-CN-4725 
       94.62         9.14         4.60        10.19         0.16        15.95 
TCGA-CN-4730 TCGA-CN-5355 TCGA-CN-5370 TCGA-CN-6018 TCGA-CN-6021 TCGA-CN-6995 
       15.19        16.04         8.52         1.48         9.07         3.68 
TCGA-CN-6998 TCGA-CN-A63W TCGA-CQ-5327 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-A4C7 
        1.51        11.44        54.58        45.30        33.11        11.61 
TCGA-CQ-A4CE TCGA-CR-5248 TCGA-CR-6488 TCGA-CR-6493 TCGA-CR-7373 TCGA-CR-7379 
       12.92        54.67        12.46         9.27        29.23        34.06 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6441 
        5.13         5.95        86.83        60.49        54.74         9.60 
TCGA-CV-6945 TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7180 TCGA-CV-7413 TCGA-CV-7416 
       12.03         4.14       111.16        10.75         9.67        25.08 
TCGA-CV-7421 TCGA-CV-7432 TCGA-CX-7086 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5631 
        0.07        84.49         7.79         4.21         3.68        18.02 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A623 TCGA-HD-A633 
        9.83        12.13         0.49        19.23         0.20         1.61 
TCGA-IQ-7630 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-MT-A51W TCGA-MT-A67G TCGA-P3-A5QA 
       15.95        19.33        11.84         0.46         3.68        54.31 
TCGA-P3-A6T0 
       19.00 

$`22Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 
       15.19        13.64        37.28         9.07        23.74        42.35 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 
       57.93        17.10        23.84        20.48        57.44         6.25 
TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 
       21.17        12.62         3.72         7.76        29.42        16.87 
TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4227 
       11.54         7.10         5.69         7.82         6.15         4.37 
TCGA-BB-4228 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       18.35        17.62        13.91        22.59        20.98        37.91 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 TCGA-CN-4722 
       14.07        14.33        71.05        20.52         0.13        26.27 
TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4731 
       23.70         4.67        14.86        20.15        12.89        32.65 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       21.11        21.11        12.99        17.79        14.33        34.68 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       26.66        41.69        13.05        16.83         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       35.54         8.32        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
       12.49        22.45         9.53        14.73        13.94        20.68 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 
       14.24        10.39        20.68        12.85         3.22         6.64 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
       13.94         7.36        10.45        20.09        12.95         3.91 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V 
       14.20        13.08        14.70         7.40        17.29        15.91 
TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        5.75        12.07         2.70        48.20        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
        2.93        46.75        29.46        45.99        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.24        28.60        32.38        32.88        34.75        32.38 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7067 
       13.25         4.24        14.99        26.79        48.03        16.73 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C9 TCGA-CQ-A4CB 
       43.04        29.62        28.83        31.82        20.15        17.92 
TCGA-CQ-A4CD TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 
       18.02        12.85         9.96        19.99        84.23        11.77 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.27        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.54        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 
       11.34        11.64         7.69        11.51        15.75        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.16        47.34        40.93        35.84         3.45         3.09 
TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7382 
       24.95         0.99        31.96         9.17        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.06        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.58         7.10 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.95        48.39       139.43        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95       107.51        94.88 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.50        91.53        80.12        17.06        13.35        23.05 
TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 
       48.59         7.07        43.23        21.07        62.43        90.12 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.73        21.90 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6950 
       26.43        11.24       126.08        19.79        42.38        15.09 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.08         6.08        53.95        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 
        8.42        28.34         2.50        64.83       126.15        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.26         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       12.92        21.80        71.21       114.97        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.36        26.20        18.97        17.13 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.85       210.97        89.33 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
        0.46        22.85        25.94        34.09       100.57        14.89 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7433 
       56.48       156.49        54.94         3.52        16.27        19.76 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A45O 
        7.17       142.52        16.64         6.38        22.19        27.98 
TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 
      169.38        67.86         5.98        24.66        10.42        10.55 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        25.41         9.60        23.05         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4ZB TCGA-DQ-5624 
       16.14         5.06        18.67         3.48         3.42        58.45 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       35.54        16.96        33.86        14.04        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 
       20.45        12.10        10.65        11.18        18.54        16.11 
TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 
       21.63         3.02         0.10        12.62         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
       13.38         1.91         4.37         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 
        1.22         1.81         1.45         0.79         0.82         0.36 
TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61H 
        0.33         1.08        34.75         4.01        14.50        13.55 
TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S 
        0.07        14.47         5.29        11.54        11.84         7.36 
TCGA-KU-A66T TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MZ-A6I9 
        6.90         1.12        12.89         1.84         3.65         8.35 
TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX 
       29.92        15.78        23.70        10.85        36.82        47.01 
TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 
       63.02        18.97         2.04        29.00        12.99        16.01 
TCGA-P3-A6T8 TCGA-QK-A64Z 
       13.15        18.18 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.07               0.07 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            111.16             210.97 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             11.44              17.13 
[1] "0.1 - 111.2 (11.4)" "0.1 - 211.0 (17.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63T         TCGA-CN-A63U 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-A63V         TCGA-CN-A63W         TCGA-CN-A63Y 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CN-A641         TCGA-CN-A642         TCGA-CQ-5323 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CQ-7071         TCGA-CQ-A4C6 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-A4C7         TCGA-CQ-A4C9         TCGA-CQ-A4CB 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CD         TCGA-CQ-A4CE         TCGA-CQ-A4CG 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-A4CH         TCGA-CQ-A4CI         TCGA-CR-5243 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CV-A45O         TCGA-CV-A45Q 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-A461         TCGA-CV-A6JD         TCGA-CV-A6JE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-D6-A4ZB         TCGA-DQ-5624         TCGA-DQ-5625 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-DQ-7596 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-F7-8489 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F7-A50G         TCGA-F7-A50I         TCGA-F7-A50J 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-F7-A61S         TCGA-F7-A61V         TCGA-F7-A61W 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F7-A620         TCGA-F7-A623         TCGA-H7-7774 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-H7-8501         TCGA-H7-8502         TCGA-HD-7229 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HD-8634 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-8635         TCGA-HD-A4C1         TCGA-HD-A633 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-HD-A634         TCGA-HD-A6I0         TCGA-HL-7533 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-A61I         TCGA-IQ-A61J         TCGA-IQ-A61K 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-A61L         TCGA-IQ-A61O         TCGA-KU-A66S 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-KU-A66T         TCGA-MT-A51W         TCGA-MT-A51X 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-MT-A67A         TCGA-MT-A67D         TCGA-MT-A67F 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-MT-A67G         TCGA-MZ-A6I9         TCGA-P3-A5Q5 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q6         TCGA-P3-A5QA         TCGA-P3-A5QE 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-P3-A5QF         TCGA-P3-A6SW         TCGA-P3-A6SX 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-P3-A6T0         TCGA-P3-A6T2         TCGA-P3-A6T3 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-P3-A6T4         TCGA-P3-A6T5         TCGA-P3-A6T6 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-P3-A6T7         TCGA-P3-A6T8         TCGA-QK-A64Z 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D79V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  22Q LOSS MUTATED         3       12        14        24         0
  22Q LOSS WILD-TYPE      21       50        52       165         8
D79V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  22Q LOSS MUTATED     6  17  16  14
  22Q LOSS WILD-TYPE  33  86  68 114
D79V4, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  T1                6                 33
  T2               17                 86
  T3               16                 68
  T4               14                114
                    vv
clus                  N0  N1  N2  N3
  22Q LOSS MUTATED    22  11  16   0
  22Q LOSS WILD-TYPE 112  41 109   7
D79V5, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  N0               22                112
  N1               11                 41
  N2               16                109
  N3                0                  7
D79V6, binary
                    cls
clus                  0  1
  22Q LOSS MUTATED   18  7
  22Q LOSS WILD-TYPE 85 36
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     18    7
  22Q LOSS WILD-TYPE   85   36
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  M0               18                 85
  MX                7                 36
D79V7, binary
                    cls
clus                   0   1
  22Q LOSS MUTATED    22  40
  22Q LOSS WILD-TYPE  94 248
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     22   40
  22Q LOSS WILD-TYPE   94  248
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE               22                 94
  MALE                 40                248
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  22Q LOSS MUTATED                                      62
  22Q LOSS WILD-TYPE                                   335
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  22Q LOSS MUTATED                                                             0
  22Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  22Q LOSS MUTATED                                                     0
  22Q LOSS WILD-TYPE                                                   6
D79V8, multiclass
                                                             clus
vv                                                            22Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     62
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            22Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      335
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          6
D79V9, binary
                    cls
clus                   0   1
  22Q LOSS MUTATED     7  55
  22Q LOSS WILD-TYPE  72 270
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      7   55
  22Q LOSS WILD-TYPE   72  270
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                 7                 72
  YES               55                270
D79V10, continuous
D79V11, continuous
D79V12, continuous

Clustering(80) Variable = XQ LOSS MUTATION ANALYSIS
D80V1, survival
                   sevent
clus2                 0   1
  XQ LOSS MUTATED    36  27
  XQ LOSS WILD-TYPE 211 125
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               63               336 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               27               125 
$`XQ LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-6868 TCGA-BA-A6D8 TCGA-BA-A6DE 
       15.19        13.64         9.07         6.25        16.87         5.98 
TCGA-BB-7862 TCGA-BB-7871 TCGA-BB-8596 TCGA-CN-4725 TCGA-CN-4735 TCGA-CN-4736 
       17.62        14.07        71.05        15.95        21.11        12.99 
TCGA-CN-5360 TCGA-CN-6010 TCGA-CN-6992 TCGA-CN-6997 TCGA-CQ-6218 TCGA-CQ-6221 
       35.54        14.73        12.95        13.08        28.60        32.88 
TCGA-CQ-6227 TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CQ-A4CI TCGA-CR-5248 TCGA-CR-6472 
        4.24        45.30        16.73        19.99        54.67        34.52 
TCGA-CR-6487 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7383 TCGA-CR-7388 TCGA-CR-7390 
        7.69         3.09         0.99        17.13        27.06        29.82 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CV-5439 TCGA-CV-5973 TCGA-CV-5976 
        7.10         5.13         5.95        17.95        86.83        48.59 
TCGA-CV-6441 TCGA-CV-6935 TCGA-CV-6940 TCGA-CV-6948 TCGA-CV-6960 TCGA-CV-7095 
        9.60         9.70        26.43        42.38        28.34        18.81 
TCGA-CV-7101 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7255 TCGA-CV-7418 TCGA-CV-7421 
        5.26        56.68         4.73         2.10        25.94         0.07 
TCGA-CV-7425 TCGA-CV-7430 TCGA-CV-7435 TCGA-CV-7438 TCGA-CX-7082 TCGA-D6-6827 
       56.48        16.27       142.52         6.38        10.42        18.67 
TCGA-DQ-7588 TCGA-F7-7848 TCGA-F7-A50G TCGA-F7-A61W TCGA-MZ-A6I9 TCGA-P3-A5QA 
       14.04        18.54         0.49         0.46         8.35        54.31 
TCGA-P3-A5QE TCGA-P3-A6T3 TCGA-P3-A6T4 
       23.70        18.97         2.04 

$`XQ LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
        9.30        37.28         8.15        23.74        42.35        57.93 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 
       17.10        23.84        20.48        53.79        57.44        21.17 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF 
       14.83         2.07        12.62         3.72         7.76        29.42 
TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 
       11.54         7.10         5.69         7.82         6.15        94.62 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 
        9.14         4.60         4.37        18.35        10.19        13.91 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7872 TCGA-BB-8601 TCGA-C9-A47Z 
       22.59        20.98        37.91        14.33        20.52         0.16 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        0.13        26.27        23.70         4.67        14.86        20.15 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4737 TCGA-CN-4738 
       12.89        15.19        32.65        21.11        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       34.68        26.66        41.69        13.05        16.04        16.83 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        5.69        12.39         8.32        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 
       11.57        12.49         8.52        22.45         9.53        13.94 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
       20.68        14.24        10.39        20.68         1.48        12.85 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.22         9.07         6.64        13.94         7.36        10.45 
TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A49B 
       20.09         3.91         3.68        14.20         1.51        14.70 
TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 
        7.40        17.29        15.91        11.44         5.75        12.07 
TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        2.70        48.20        39.68        21.50         2.93        54.58 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       46.75        29.46        45.99        10.42        11.21         4.24 
TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-6229 
       32.38        34.75        32.38        13.25        14.99        26.79 
TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4C6 
       48.03        33.11        43.04        29.62        28.83        31.82 
TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG 
       11.61        20.15        17.92        18.02        12.92        12.85 
TCGA-CQ-A4CH TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
        9.96        84.23        11.77        37.87        26.27        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        36.99        18.54        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 
       11.90        10.22        11.34        11.64        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.16        47.34        40.93 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 
       35.84         3.45        24.95        29.23        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 
       34.06        19.92        26.17        32.78        47.01        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7401 
       30.02        31.10        29.85        29.52        30.58        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.95        48.39       139.43        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20       107.51        94.88        76.50        91.53 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5977 TCGA-CV-5978 
       80.12        17.06        13.35        23.05        60.49         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 
       43.23        54.74        21.07        62.43        90.12         2.14 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 
        5.46        20.52         4.73        21.90        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       19.79        12.03        15.09        30.08         6.08        53.95 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 
       65.82        10.98         7.13         8.42         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
       64.83       126.15       111.16        12.66         7.99         9.01 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.92        21.80        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
      114.97        47.47        36.00        31.36        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       17.13        95.34         4.96        11.87        47.97        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.85       210.97        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7422 TCGA-CV-7423 
        9.67         0.46        22.85        25.08        34.09       100.57 
TCGA-CV-7424 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 
       14.89       156.49        54.94         3.52        84.49        19.76 
TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 
        7.17        16.64        22.19        27.98       169.38        67.86 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
        5.98        24.66        10.55         7.79        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       25.41         9.60        23.05         2.53        16.14         5.06 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 
        3.48         4.21         3.68         3.42        58.45        35.54 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       16.96        33.86        18.02        18.90        25.48        20.45 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8298 
        9.83        12.13        12.10        10.65        11.18        16.11 
TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A620 
       21.63         3.02        19.23         0.10        12.62         0.43 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.20        13.38         1.91         4.37         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.22         1.81         1.45         0.79         0.82 
TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 
        0.36         1.61         0.33         1.08        34.75        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I 
        4.01        14.50        19.33        11.84        13.55         0.07 
TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T 
       14.47         5.29        11.54        11.84         7.36         6.90 
TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G 
        0.46         1.12        12.89         1.84         3.65         3.68 
TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 
       29.92        15.78        10.85        36.82        47.01        19.00 
TCGA-P3-A6T2 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
       63.02        29.00        12.99        16.01        13.15        18.18 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             0.07              0.07 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
           142.52            210.97 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
           16.270            16.125 
[1] "0.1 - 142.5 (16.3)" "0.1 - 211.0 (16.1)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-A63T        TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63W 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-A63Y        TCGA-CN-A641        TCGA-CN-A642        TCGA-CQ-5323 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-7069        TCGA-CQ-7071        TCGA-CQ-A4C6        TCGA-CQ-A4C7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-A4C9        TCGA-CQ-A4CB        TCGA-CQ-A4CD        TCGA-CQ-A4CE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-A4CG        TCGA-CQ-A4CH        TCGA-CQ-A4CI        TCGA-CR-5243 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7377        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7440        TCGA-CV-A45O        TCGA-CV-A45Q        TCGA-CV-A461 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A4C1        TCGA-HD-A633 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-A634        TCGA-HD-A6I0        TCGA-HL-7533        TCGA-IQ-7630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632        TCGA-IQ-A61E        TCGA-IQ-A61G 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-A61H        TCGA-IQ-A61I        TCGA-IQ-A61J        TCGA-IQ-A61K 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S        TCGA-KU-A66T 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-P3-A6SW        TCGA-P3-A6SX        TCGA-P3-A6T0        TCGA-P3-A6T2 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-P3-A6T3        TCGA-P3-A6T4        TCGA-P3-A6T5        TCGA-P3-A6T6 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-P3-A6T7        TCGA-P3-A6T8        TCGA-QK-A64Z 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D80V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  XQ LOSS MUTATED         6        6        10        29         1
  XQ LOSS WILD-TYPE      18       56        56       160         7
D80V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  XQ LOSS MUTATED     7  13  20  14
  XQ LOSS WILD-TYPE  32  90  64 114
D80V4, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  T1               7                32
  T2              13                90
  T3              20                64
  T4              14               114
                   vv
clus                 N0  N1  N2  N3
  XQ LOSS MUTATED    15   9  21   1
  XQ LOSS WILD-TYPE 119  43 104   6
D80V5, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  N0              15               119
  N1               9                43
  N2              21               104
  N3               1                 6
D80V6, binary
                   cls
clus                 0  1
  XQ LOSS MUTATED   15  5
  XQ LOSS WILD-TYPE 88 38
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED     15    5
  XQ LOSS WILD-TYPE   88   38
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  M0              15                88
  MX               5                38
D80V7, binary
                   cls
clus                  0   1
  XQ LOSS MUTATED    23  40
  XQ LOSS WILD-TYPE  93 248
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED     23   40
  XQ LOSS WILD-TYPE   93  248
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  FEMALE              23                93
  MALE                40               248
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  XQ LOSS MUTATED                                      61
  XQ LOSS WILD-TYPE                                   336
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  XQ LOSS MUTATED                                                             0
  XQ LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  XQ LOSS MUTATED                                                     2
  XQ LOSS WILD-TYPE                                                   4
D80V8, multiclass
                                                             clus
vv                                                            XQ LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    61
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       2
                                                             clus
vv                                                            XQ LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     336
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D80V9, binary
                   cls
clus                  0   1
  XQ LOSS MUTATED    11  52
  XQ LOSS WILD-TYPE  68 273
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED     11   52
  XQ LOSS WILD-TYPE   68  273
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO               11                68
  YES              52               273
D80V10, continuous
D80V11, continuous
D80V12, continuous
> q(save="no")
