
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/HNSC-TP/8312257/HNSC-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/HNSC-TP/8142868/HNSC-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=.05", "-cQ=0.25", "-MF=ALL", "-oT=HNSC-TP", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=HNSC-TP"
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/HNSC-TP/8142868/HNSC-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/HNSC-TP/8312257/HNSC-TP.mergedcluster.txt"

nPatients in clinical file=410, in cluster file=517, common to both=410
[1]  10 410
[1] "CN_CNMF"
[1] 3
  1   2   3   4 
144  81 146  33 
  1   2   3   4 
144  81 146  33 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3  4  5  6  7 
56 78 79 57 58 62 19 
 1  2  3  4  5  6  7 
56 78 79 57 58 62 19 
[1] "RPPA_CNMF"
[1] 3
 1  2  3  4 
55 52 37 68 
 1  2  3  4 
55 52 37 68 
[1] "RPPA_CHIERARCHICAL"
[1] 3
  1   2   3 
 17  73 122 
  1   2   3 
 17  73 122 
[1] "MRNASEQ_CNMF"
[1] 3
  1   2   3 
157 120 122 
  1   2   3 
157 120 122 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
124 136 139 
  1   2   3 
124 136 139 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
113 165 130 
  1   2   3 
113 165 130 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2 
165 243 
  1   2 
165 243 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
  1   2   3 
115 137 119 
  1   2   3 
115 137 119 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
  1   2   3 
140 180  51 
  1   2   3 
140 180  51 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "RADIATIONTHERAPY"                      
[15] "HISTOLOGICALTYPE"                      
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NUMBERPACKYEARSSMOKED"                 
[18] "YEAROFTOBACCOSMOKINGONSET"             
[19] "NUMBER.OF.LYMPH.NODES"                 
[20] "GLEASON_SCORE"                         
[21] "PSA_VALUE"                             
[22] "DAYS_TO_PSA"                           
[23] "BATCHNUMBER"                           

Input Data has 23 rows and 410 columns.

[1] "Batch" "23"   
[1] "Last Follow UP"
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
         462          283          415           NA          276          248 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
         722         1288         1762          520          725          623 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
        1636         1747          190          644          451           63 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA 
         384          113          236          895          513          351 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 
         216           NA          182           NA          187         2878 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
         278          140          133          558          310          536 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
         423          687          638         1153          428          436 
TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
        2161          624            5            4          799          721 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
         485          142          452          613          392          462 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4734 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
         993          642          758          642          395          541 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
          NA         1055          811         1268           NA          488 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5361 TCGA-CN-5363 
         512          173           NA         1081          194           NA 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
          NA           NA           NA           NA           NA           NA 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
         683          290          448          424          629          433 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
         316          629           45          391           98           NA 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
         202          424          224          318          611          394 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
         119           NA          432          398           46          447 
TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 
         225          526          484          348          175          367 
TCGA-CN-A642 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
          NA         1466         1207          654           NA         1660 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
        1422          896         1399          317          341          129 
TCGA-CQ-6218 TCGA-CQ-6219 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6222 TCGA-CQ-6223 
         870           NA           NA         1000         1407         1057 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
         985           NA           NA           NA          815         1461 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 
        1378         1007          509         1309          901          877 
TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CA TCGA-CQ-A4CB TCGA-CQ-A4CD 
         968           NA          613           NA          545          548 
TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 
         393          391          303          608         2562          358 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
        1663         1152          799         1777         1521           NA 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
        1050         1125           NA          514           NA          362 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
         311          345          354          234          379          350 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
         479           NA         1435         1191         1440         1245 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
          NA          105           NA          759          889           30 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
         972           NA         1036           NA          796           NA 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
         997         1430           NA          392          907          913 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
         946          908          898          930          216          156 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
         181         1077          911         1472         4241          522 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
        3930         3295         1438          584          546         3270 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
        2886         2327         2784         2437          519          406 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
         701         2641         1478         1840          215         1315 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
        1665          641         1899           NA           NA           NA 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
          NA         3835           NA           NA           NA           NA 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
          NA           NA           NA           NA           NA         3837 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
        3381           NA           NA           NA           NA           NA 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
        3497         1724           NA         1444         1095          954 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
         797           NA           NA           NA           NA           NA 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
          NA           NA         1099           NA           NA           NA 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
          NA           NA         4335           NA           NA           NA 
TCGA-CV-7446 TCGA-CV-7568 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A461 TCGA-CV-A6JD 
          NA           NA          851           NA           NA           NA 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
         750          317          321          237          828           NA 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
         773          292          701           77          491          154 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
         568          106          128          112          104         1778 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
        1081          516         1030          548           NA          575 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
         775          622          299          369          368          324 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I 
         340          564          490          658           15           92 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A622 
         585            3          384           14           13           NA 
TCGA-F7-A623 TCGA-F7-A624 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
           6           NA          407           58          133            2 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7831 TCGA-HD-7832 TCGA-HD-7917 TCGA-HD-8224 
           5           25           NA           NA           37           55 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 
          44           24           25           11           49           10 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
          33         1057          485          122          441          588 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61I TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L 
         360          412           NA          440           NA          351 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
         360          224          210           14           34          392 
TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 
          56          111          112          254          910           NA 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6SX TCGA-P3-A6T0 
        1652          721           NA         1120           NA          578 
TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 
        1917           NA           NA           NA           NA           NA 
TCGA-P3-A6T8 TCGA-QK-A64Z 
         400          553 
Variable 1:'AGE':	nDistinctValues=60,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=147,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=261,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=22,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=51,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 14:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBERPACKYEARSSMOKED':	nDistinctValues=82,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=56,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=25,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 21:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 23:'BATCH.NUMBER':	nDistinctValues=25,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "NEOPLASM.DISEASESTAGE"                 
 [3] "PATHOLOGY.T.STAGE"                     
 [4] "PATHOLOGY.N.STAGE"                     
 [5] "PATHOLOGY.M.STAGE"                     
 [6] "GENDER"                                
 [7] "HISTOLOGICAL.TYPE"                     
 [8] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [9] "NUMBERPACKYEARSSMOKED"                 
[10] "YEAROFTOBACCOSMOKINGONSET"             
[11] "NUMBER.OF.LYMPH.NODES"                 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 410 columns, 1 survival variables, and 11 non-survival variables.
AGE, nv=60, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=5, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 39 106  85 130 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 39 106  85 130 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T1  T2  T3  T4 
 39 106  85 130 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 39 106  85 130 
PATHOLOGY.N.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
135  52 129   7 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
135  52 129   7 
$ClinVariableName
[1] "PATHOLOGY.N.STAGE"

$Table
vv
 N0  N1  N2  N3 
135  52 129   7 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
135  52 129   7 
PATHOLOGY.M.STAGE, nv=2, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=82, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=56, binary=FALSE, numeric=TRUE
NUMBER.OF.LYMPH.NODES, nv=25, binary=FALSE, numeric=TRUE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2        0   1
  subtype1  75  69
  subtype2  50  30
  subtype3 101  42
  subtype4  21  11
subtype1 subtype2 subtype3 subtype4 
     144       80      143       32 
subtype1 subtype2 subtype3 subtype4 
      69       30       42       11 
$subtype1
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5558 TCGA-BA-6868 
       15.19         9.30        13.64         8.15        53.79         6.25 
TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6DE TCGA-BB-4224 
       14.83        12.62         3.72         7.76         5.98         9.14 
TCGA-BB-4227 TCGA-BB-7870 TCGA-BB-7872 TCGA-C9-A47Z TCGA-CN-4723 TCGA-CN-4726 
        4.37        37.91        14.33         0.16        23.70         4.67 
TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4742 
       14.86        12.89        21.11        12.99        17.79        13.05 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-6011 TCGA-CN-6013 
        8.32        16.21        11.84        11.57        13.94        14.24 
TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A641 
        7.36        20.09         3.68        13.08        14.70        12.07 
TCGA-CQ-5326 TCGA-CQ-5329 TCGA-CQ-5332 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 
        2.93        46.75        10.42        32.38         4.24        14.99 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-A4CB TCGA-CR-5247 TCGA-CR-6474 TCGA-CR-6478 
       33.11        16.73        17.92        11.77        18.54         6.02 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 
       12.46        11.51         9.27        39.16        47.34        35.84 
TCGA-CR-7372 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7383 TCGA-CR-7390 TCGA-CV-5430 
       24.95        34.06        19.92        17.13        29.82       139.43 
TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5444 
       17.16        47.28        19.20       107.51        94.88        80.12 
TCGA-CV-5970 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6933 
       13.35        86.83        48.59        43.23        54.74        90.12 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6945 TCGA-CV-6948 
        9.70         5.46        20.52        26.43        12.03        42.38 
TCGA-CV-6950 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-7090 TCGA-CV-7095 
       15.09         7.13         8.42        28.34       126.15        18.81 
TCGA-CV-7097 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7235 TCGA-CV-7243 
       12.66         1.84        12.92        71.21        56.68        31.36 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7255 TCGA-CV-7409 TCGA-CV-7414 
       26.20        18.97        17.13         2.10        17.85         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7432 TCGA-CV-7437 TCGA-CV-7438 
       22.85        25.08       100.57        84.49        16.64         6.38 
TCGA-CV-7440 TCGA-CV-A6JE TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6517 TCGA-D6-6823 
       22.19        24.66         7.79        27.22         9.60        23.05 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 
       16.14         5.06         4.21         3.68        58.45        35.54 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7592 TCGA-F7-7848 TCGA-F7-8298 
       18.02        14.04        18.90         9.83        18.54        16.11 
TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61W TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        3.02        19.23         0.46         4.37         0.07         0.16 
TCGA-HD-8635 TCGA-IQ-7630 TCGA-IQ-A61G TCGA-IQ-A61J TCGA-IQ-A61K TCGA-KU-A66T 
        0.82        15.95        11.84        14.47         5.29         6.90 
TCGA-MT-A51X TCGA-MT-A67D TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A6SX TCGA-P3-A6T3 
        1.12         1.84        15.78        54.31        47.01        18.97 
TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-P3-A6T8 TCGA-QK-A64Z 
        2.04        29.00        12.99        16.01        13.15        18.18 

$subtype2
TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-A6D8 
       37.28         9.07        17.10        21.17         2.07        16.87 
TCGA-BB-4223 TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7871 TCGA-BB-8601 TCGA-CN-4725 
       94.62        17.62        22.59        14.07        20.52        15.95 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4739 TCGA-CN-5360 TCGA-CN-6010 TCGA-CN-6012 
       15.19        32.65        34.68        35.54        14.73        20.68 
TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-A63T 
        9.07        13.94        10.45        12.95         3.91         7.40 
TCGA-CN-A63U TCGA-CN-A63W TCGA-CQ-5323 TCGA-CQ-6221 TCGA-CQ-6225 TCGA-CQ-A4C9 
       17.29        11.44        48.20        32.88        13.25        20.15 
TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-6477 TCGA-CR-6487 TCGA-CR-7364 TCGA-CR-7368 
       19.99        84.23        16.90         7.69        47.18        40.93 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7389 TCGA-CR-7398 TCGA-CR-7399 
        3.45         3.09         0.99        12.89         5.13         5.95 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5439 TCGA-CV-5978 
       29.95        48.39       129.21       108.33        17.95         7.07 
TCGA-CV-6441 TCGA-CV-6941 TCGA-CV-6951 TCGA-CV-6954 TCGA-CV-6962 TCGA-CV-7091 
        9.60        11.24        30.08        65.82         4.14       111.16 
TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7242 TCGA-CV-7253 
        5.26        52.31        21.80        10.75        36.00        11.87 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7418 TCGA-CV-7421 
       36.13        18.41        57.47        35.54        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7430 TCGA-CV-7435 TCGA-CV-A461 TCGA-CX-7082 
       34.09        14.89        16.27       142.52        67.86        10.42 
TCGA-D6-8568 TCGA-DQ-5629 TCGA-DQ-7595 TCGA-F7-A623 TCGA-HD-7917 TCGA-HD-8224 
        3.48        16.96        10.65         0.20         1.22         1.81 
TCGA-HD-8314 TCGA-IQ-A61O 
        1.45        11.84 

$subtype3
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-A4IF 
       23.74        42.35        57.93        23.84        20.48        29.42 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4225 TCGA-BB-4228 
        7.10         5.69         7.82         6.15         4.60        18.35 
TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-8596 TCGA-C9-A480 TCGA-CN-4722 
       10.19        13.91        20.98        71.05         0.13        26.27 
TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5356 
       20.15        21.11        14.33        26.66        41.69        16.83 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5365 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
        5.69        12.39        11.54        12.49         8.52        22.45 
TCGA-CN-5374 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        9.53        10.39        20.68         1.48        12.85         3.22 
TCGA-CN-6022 TCGA-CN-A63V TCGA-CN-A63Y TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 
        6.64        15.91         5.75        39.68        21.50        54.58 
TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6223 TCGA-CQ-6229 
       45.99        11.21         4.24        28.60        34.75        26.79 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4CG 
       48.03        45.30        43.04        29.62        28.83        12.85 
TCGA-CQ-A4CH TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 
        9.96        54.67        37.87        26.27        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       34.52        36.99        11.90        10.22        11.34        11.64 
TCGA-CR-6492 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 
       15.75        31.96         9.17        26.17        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       27.06        30.02        31.10        29.85        29.52        30.58 
TCGA-CR-7397 TCGA-CR-7401 TCGA-CV-5443 TCGA-CV-5971 TCGA-CV-6436 TCGA-CV-6934 
        7.10        35.41        91.53        23.05        62.43         2.14 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6953 TCGA-CV-6955 
        4.73        21.90       126.08        19.79        53.95        10.98 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7183 TCGA-CV-7236 
        2.50        64.83         7.99         9.01       114.97         4.73 
TCGA-CV-7238 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       47.47        95.34         4.96       210.97        89.33         9.67 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7433 TCGA-CV-A45O TCGA-CV-A45Q 
       56.48       156.49        54.94        19.76        27.98       169.38 
TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6824 TCGA-D6-6827 TCGA-D6-A4ZB TCGA-DQ-5630 
       10.55        13.25         2.53        18.67         3.42        33.86 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7596 TCGA-F7-8489 
       25.48        20.45        12.13        12.10        11.18        21.63 
TCGA-F7-A61V TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7754 TCGA-HD-8634 
       12.62         0.43        13.38         1.91         0.82         0.79 
TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7631 
        0.36         1.61         0.33         1.08        34.75         4.01 
TCGA-IQ-7632 TCGA-IQ-A61I TCGA-KU-A66S TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 
       14.50         0.07         7.36         3.65         8.35        29.92 
TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6T0 TCGA-P3-A6T2 
       23.70        10.85        36.82        19.00        63.02 

$subtype4
TCGA-BA-5559 TCGA-BA-A6DA TCGA-CN-5355 TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A642 
       57.44        11.54        16.04        14.20         1.51         2.70 
TCGA-CQ-5330 TCGA-CQ-6220 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4CD TCGA-CQ-A4CE 
       29.46        32.38        31.82        11.61        18.02        12.92 
TCGA-CR-6467 TCGA-CR-7373 TCGA-CV-5442 TCGA-CV-5966 TCGA-CV-5977 TCGA-CV-6433 
       58.42        29.23        76.50        17.06        60.49        21.07 
TCGA-CV-6952 TCGA-CV-7254 TCGA-CV-7429 TCGA-CV-7434 TCGA-CV-A6JD TCGA-D6-6516 
        6.08        47.97         3.52         7.17         5.98        25.41 
TCGA-F7-A50G TCGA-F7-A61S TCGA-IQ-A61E TCGA-IQ-A61H TCGA-IQ-A61L TCGA-MT-A51W 
        0.49         0.10        19.33        13.55        11.54         0.46 
TCGA-MT-A67A TCGA-MT-A67G 
       12.89         3.68 

subtype1 subtype2 subtype3 subtype4 
    0.07     0.07     0.07     0.10 
subtype1 subtype2 subtype3 subtype4 
  139.43   142.52   210.97    76.50 
subtype1 subtype2 subtype3 subtype4 
  15.140   16.885   19.790   13.875 
[1] "0.1 - 139.4 (15.1)" "0.1 - 142.5 (16.9)" "0.1 - 211.0 (19.8)"
[4] "0.1 - 76.5 (13.9)" 
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
  [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype4" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype4"
 [25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [43] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [55] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [97] "subtype4" "subtype1" "subtype4" "subtype1" "subtype2" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype1" "subtype4" "subtype2"
[109] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype4"
[115] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype4"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype3" "subtype4" "subtype4" "subtype2" "subtype1"
[139] "subtype4" "subtype4" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype1" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[163] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[169] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype4"
[175] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[187] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[199] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[205] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype4"
[211] "subtype1" "subtype3" "subtype1" "subtype1" "subtype4" "subtype2"
[217] "subtype1" "subtype1" "subtype4" "subtype3" "subtype2" "subtype1"
[223] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[229] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[235] "subtype1" "subtype2" "subtype4" "subtype3" "subtype2" "subtype3"
[241] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[247] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[253] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[259] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[271] "subtype2" "subtype4" "subtype1" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[283] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[289] "subtype2" "subtype3" "subtype3" "subtype3" "subtype4" "subtype2"
[295] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype1"
[301] "subtype1" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
[307] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype4"
[313] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[319] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[325] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[331] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[337] "subtype1" "subtype1" "subtype3" "subtype4" "subtype1" "subtype1"
[343] "subtype4" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[349] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[355] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[367] "subtype4" "subtype1" "subtype4" "subtype3" "subtype1" "subtype1"
[373] "subtype4" "subtype2" "subtype3" "subtype1" "subtype4" "subtype1"
[379] "subtype4" "subtype1" "subtype3" "subtype4" "subtype3" "subtype3"
[385] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[391] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[397] "subtype1" "subtype1" "subtype1"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
  [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype4" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype4"
 [25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [43] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [55] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [97] "subtype4" "subtype1" "subtype4" "subtype1" "subtype2" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype1" "subtype4" "subtype2"
[109] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype4"
[115] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype4"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype3" "subtype4" "subtype4" "subtype2" "subtype1"
[139] "subtype4" "subtype4" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype1" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[163] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[169] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype4"
[175] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[187] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[199] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[205] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype4"
[211] "subtype1" "subtype3" "subtype1" "subtype1" "subtype4" "subtype2"
[217] "subtype1" "subtype1" "subtype4" "subtype3" "subtype2" "subtype1"
[223] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[229] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[235] "subtype1" "subtype2" "subtype4" "subtype3" "subtype2" "subtype3"
[241] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[247] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[253] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[259] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[271] "subtype2" "subtype4" "subtype1" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[283] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[289] "subtype2" "subtype3" "subtype3" "subtype3" "subtype4" "subtype2"
[295] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype1"
[301] "subtype1" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
[307] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype4"
[313] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[319] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[325] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[331] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[337] "subtype1" "subtype1" "subtype3" "subtype4" "subtype1" "subtype1"
[343] "subtype4" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[349] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[355] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[367] "subtype4" "subtype1" "subtype4" "subtype3" "subtype1" "subtype1"
[373] "subtype4" "subtype2" "subtype3" "subtype1" "subtype4" "subtype1"
[379] "subtype4" "subtype1" "subtype3" "subtype4" "subtype3" "subtype3"
[385] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[391] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[397] "subtype1" "subtype1" "subtype1"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
  [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype4" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype4"
 [25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [43] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [55] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [97] "subtype4" "subtype1" "subtype4" "subtype1" "subtype2" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype1" "subtype4" "subtype2"
[109] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype4"
[115] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype4"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype3" "subtype4" "subtype4" "subtype2" "subtype1"
[139] "subtype4" "subtype4" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype1" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[163] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[169] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype4"
[175] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[187] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[199] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[205] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype4"
[211] "subtype1" "subtype3" "subtype1" "subtype1" "subtype4" "subtype2"
[217] "subtype1" "subtype1" "subtype4" "subtype3" "subtype2" "subtype1"
[223] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[229] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[235] "subtype1" "subtype2" "subtype4" "subtype3" "subtype2" "subtype3"
[241] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[247] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[253] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[259] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[271] "subtype2" "subtype4" "subtype1" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[283] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[289] "subtype2" "subtype3" "subtype3" "subtype3" "subtype4" "subtype2"
[295] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype1"
[301] "subtype1" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
[307] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype4"
[313] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[319] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[325] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[331] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[337] "subtype1" "subtype1" "subtype3" "subtype4" "subtype1" "subtype1"
[343] "subtype4" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[349] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[355] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[367] "subtype4" "subtype1" "subtype4" "subtype3" "subtype1" "subtype1"
[373] "subtype4" "subtype2" "subtype3" "subtype1" "subtype4" "subtype1"
[379] "subtype4" "subtype1" "subtype3" "subtype4" "subtype3" "subtype3"
[385] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[391] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[397] "subtype1" "subtype1" "subtype1"
D1V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1       9       17        22        77         4
  subtype2       3       11        11        41         1
  subtype3       9       28        26        57         2
  subtype4       3        6         7        14         1
D1V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 14 34 27 55
  subtype2  5 20 20 23
  subtype3 16 42 26 41
  subtype4  4  7 11  9
D1V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 39 18 58  3
  subtype2 23  8 28  1
  subtype3 59 20 30  2
  subtype4 13  6  9  1
D1V5, multiclass
D1V6, binary
          cls
clus        0  1
  subtype1 31 16
  subtype2 15  5
  subtype3 44 18
  subtype4 13  4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   31   16
  subtype2   15    5
  subtype3   44   18
  subtype4   13    4
    clus
vv   subtype1 subtype2 subtype3 subtype4
  M0       31       15       44       13
  MX       16        5       18        4
D1V7, binary
          cls
clus         0   1
  subtype1  34 110
  subtype2  17  64
  subtype3  52  94
  subtype4  13  20
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   34  110
  subtype2   17   64
  subtype3   52   94
  subtype4   13   20
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       34       17       52       13
  MALE        110       64       94       20
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                   144
  subtype2                                    78
  subtype3                                   142
  subtype4                                    33
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  subtype1                                                           0
  subtype2                                                           1
  subtype3                                                           0
  subtype4                                                           0
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  subtype1                                                   0
  subtype2                                                   2
  subtype3                                                   4
  subtype4                                                   0
D1V8, multiclass
D1V9, binary
          cls
clus         0   1
  subtype1  35 109
  subtype2  13  68
  subtype3  28 118
  subtype4   3  30
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   35  109
  subtype2   13   68
  subtype3   28  118
  subtype4    3   30
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        35       13       28        3
  YES      109       68      118       30
D1V10, continuous
D1V11, continuous
D1V12, continuous

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2       0  1
  subtype1 38 18
  subtype2 45 32
  subtype3 43 36
  subtype4 45 12
  subtype5 34 22
  subtype6 36 24
  subtype7  9 10
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
      56       77       79       57       56       60       19 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
      18       32       36       12       22       24       10 
$subtype1
TCGA-BA-4074 TCGA-BA-5555 TCGA-BA-6869 TCGA-BA-A4IF TCGA-BA-A6DE TCGA-BB-7864 
       15.19        17.10        21.17        29.42         5.98        22.59 
TCGA-BB-7870 TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-4739 
       37.91        14.86        15.19        32.65        17.79        34.68 
TCGA-CN-4740 TCGA-CN-5356 TCGA-CN-5360 TCGA-CN-6988 TCGA-CN-A63T TCGA-CN-A63U 
       26.66        16.83        35.54        10.45         7.40        17.29 
TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A641 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-A4C9 
       15.91        11.44        12.07        13.25        14.99        20.15 
TCGA-CR-5247 TCGA-CR-7364 TCGA-CR-7379 TCGA-CR-7398 TCGA-CR-7402 TCGA-CV-5441 
       11.77        47.18        34.06         5.13        29.95        94.88 
TCGA-CV-6941 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-7091 TCGA-CV-7242 
       11.24        65.82         7.13        28.34       111.16        36.00 
TCGA-CV-7245 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7263 TCGA-CV-7409 TCGA-CV-7421 
       26.20        95.34        11.87        18.41        17.85         0.07 
TCGA-CV-7428 TCGA-CV-7435 TCGA-CV-7440 TCGA-CV-A461 TCGA-CX-7086 TCGA-D6-6823 
       54.94       142.52        22.19        67.86         7.79        23.05 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-A61V TCGA-HD-7917 TCGA-HD-8224 TCGA-IQ-7631 
       10.65        18.54        12.62         1.22         1.81         4.01 
TCGA-KU-A66S TCGA-P3-A5QF 
        7.36        10.85 

$subtype2
TCGA-BA-4075 TCGA-BA-5149 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4224 TCGA-BB-4227 
        9.30         8.15        12.62         3.72         9.14         4.37 
TCGA-BB-7872 TCGA-CN-4725 TCGA-CN-4736 TCGA-CN-4742 TCGA-CN-5365 TCGA-CN-5367 
       14.33        15.95        12.99        13.05        11.54        11.57 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6020 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5329 
        8.52        22.45         3.22        14.20         1.51        46.75 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-7064 TCGA-CQ-7065 
       28.60        32.38        34.75        32.38        45.30        33.11 
TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CQ-A4CE TCGA-CR-6477 TCGA-CR-6493 TCGA-CR-7372 
       16.73        29.62        12.92        16.90         9.27        24.95 
TCGA-CR-7401 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5970 TCGA-CV-5973 TCGA-CV-5976 
       35.41        19.20        17.95        13.35        86.83        48.59 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6950 TCGA-CV-6959 TCGA-CV-7090 TCGA-CV-7102 
       43.23        54.74        15.09         8.42       126.15         1.84 
TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7243 TCGA-CV-7247 
       12.92        71.21        10.75       114.97        31.36        18.97 
TCGA-CV-7255 TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7438 TCGA-CV-A6JE TCGA-D6-6517 
        2.10        25.08       100.57         6.38        24.66         9.60 
TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-7588 TCGA-DQ-7592 TCGA-F7-8298 
        4.21        58.45        35.54        14.04         9.83        16.11 
TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61S TCGA-HD-7753 TCGA-IQ-7630 TCGA-IQ-A61J 
        0.49        19.23         0.10         0.16        15.95        14.47 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66T TCGA-MT-A51X TCGA-P3-A5QA 
        5.29        11.54        11.84         6.90         1.12        54.31 
TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T3 TCGA-P3-A6T5 TCGA-QK-A64Z 
       47.01        19.00        18.97        29.00        18.18 

$subtype3
TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-7269 TCGA-BA-A6D8 
       13.64         9.07         6.25        14.83         7.76        16.87 
TCGA-BA-A6DA TCGA-BB-7862 TCGA-BB-7871 TCGA-BB-8601 TCGA-CN-4723 TCGA-CN-4735 
       11.54        17.62        14.07        20.52        23.70        21.11 
TCGA-CN-5361 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6019 TCGA-CN-6021 
        6.38        14.73        13.94        20.68        12.85         9.07 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 
       13.94         7.36        20.09        12.95         3.91        13.08 
TCGA-CQ-5332 TCGA-CQ-6221 TCGA-CQ-A4CG TCGA-CQ-A4CI TCGA-CR-7370 TCGA-CR-7371 
       10.42        32.88        12.85        19.99         3.45         3.09 
TCGA-CR-7374 TCGA-CR-7389 TCGA-CR-7390 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 
        0.99        12.89        29.82       139.43       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5440 TCGA-CV-5978 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6937 
       47.28       107.51         7.07        90.12         9.70        20.52 
TCGA-CV-6940 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7101 
       26.43        12.03        42.38        30.08         4.14         5.26 
TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7235 TCGA-CV-7248 TCGA-CV-7254 TCGA-CV-7261 
       52.31        21.80        56.68        17.13        47.97        36.13 
TCGA-CV-7407 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 
       35.54         0.46        22.85        25.94        34.09        14.89 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7437 TCGA-CX-7082 TCGA-CX-7219 TCGA-D6-6516 
        3.52        16.27        16.64        10.42        27.22        25.41 
TCGA-D6-6827 TCGA-D6-A4ZB TCGA-DQ-5629 TCGA-DQ-7589 TCGA-F7-A50I TCGA-F7-A61W 
       18.67         3.42        16.96        18.90         3.02         0.46 
TCGA-F7-A623 TCGA-H7-8502 TCGA-HD-8635 TCGA-IQ-A61G TCGA-IQ-A61H TCGA-P3-A5Q6 
        0.20         4.37         0.82        11.84        13.55        15.78 
TCGA-P3-A6T4 
        2.04 

$subtype4
TCGA-BA-4077 TCGA-BA-5153 TCGA-BA-5559 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4225 
       37.28        57.93        57.44         2.07        94.62         4.60 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7866 TCGA-CN-4741 TCGA-CN-5374 TCGA-CN-6013 
       18.35        10.19        20.98        41.69         9.53        14.24 
TCGA-CN-A49B TCGA-CN-A63Y TCGA-CQ-5323 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       14.70         5.75        48.20        84.23        54.67        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.27        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-7368 TCGA-CR-7369 
       11.90        10.22        11.34         7.69        40.93        35.84 
TCGA-CR-7385 TCGA-CR-7399 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5442 TCGA-CV-5443 
       32.78         5.95        48.39        17.16        76.50        91.53 
TCGA-CV-6433 TCGA-CV-6441 TCGA-CV-6939 TCGA-CV-7100 TCGA-CV-7406 TCGA-DQ-7590 
       21.07         9.60        21.90         9.01        57.47        25.48 
TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7596 TCGA-HD-7754 TCGA-HD-8314 
       20.45        12.13        12.10        11.18         0.82         1.45 
TCGA-HD-A634 TCGA-HL-7533 TCGA-IQ-A61I TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 
        0.33        34.75         0.07         3.68         8.35        29.92 
TCGA-P3-A5QE TCGA-P3-A6SW TCGA-P3-A6T6 
       23.70        36.82        12.99 

$subtype5
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-A6DF TCGA-BB-7863 
       23.74        42.35        23.84        53.79         7.82        13.91 
TCGA-C9-A47Z TCGA-CN-4722 TCGA-CN-4734 TCGA-CN-5363 TCGA-CN-6018 TCGA-CN-6995 
        0.16        26.27        24.92         8.32         1.48         3.68 
TCGA-CN-A642 TCGA-CQ-5324 TCGA-CQ-5327 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-7068 
        2.70        39.68        54.58        11.21         4.24        43.04 
TCGA-CQ-7071 TCGA-CQ-A4CD TCGA-CR-6484 TCGA-CR-7373 TCGA-CR-7380 TCGA-CR-7386 
       28.83        18.02        11.64        29.23        19.92        47.01 
TCGA-CR-7395 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5977 TCGA-CV-6938 TCGA-CV-6942 
       30.58        80.12        17.06        60.49         4.73       126.08 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7252 
        6.08        53.95        10.98        12.66         7.99         4.96 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-A45O TCGA-CV-A45Q 
       89.33         9.67        56.48       156.49        27.98       169.38 
TCGA-D6-6825 TCGA-D6-6826 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-8634 
       16.14         5.06        13.38         1.91         0.07         0.79 
TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-IQ-A61E TCGA-MT-A67A TCGA-MT-A67F 
        0.36         1.61         1.08        19.33        12.89         3.65 
TCGA-P3-A6T2 TCGA-P3-A6T7 
       63.02        16.01 

$subtype6
TCGA-BA-5557 TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BB-4217 TCGA-BB-8596 TCGA-C9-A480 
       20.48         7.10         5.69         6.15        71.05         0.13 
TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4738 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5366 
       20.15        21.11        14.33         5.69        12.39        11.84 
TCGA-CN-5369 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6022 TCGA-CQ-5325 TCGA-CQ-5326 
       12.49        10.39        20.68         6.64        21.50         2.93 
TCGA-CQ-5331 TCGA-CQ-6219 TCGA-CQ-6222 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-A4C6 
       45.99        15.75        46.26         4.24        26.79        31.82 
TCGA-CQ-A4CB TCGA-CQ-A4CH TCGA-CR-6474 TCGA-CR-6478 TCGA-CR-6488 TCGA-CR-6492 
       17.92         9.96        18.54         6.02        12.46        15.75 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7388 TCGA-CR-7391 
       31.96         9.17        26.17        17.13        27.06        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7397 TCGA-CV-5971 TCGA-CV-6943 
       31.10        29.85        29.52         7.10        23.05        19.79 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7410 TCGA-CV-7433 
        2.50        64.83         4.73        47.47       210.97        19.76 
TCGA-CV-7568 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6824 TCGA-D6-8568 TCGA-D6-A4Z9 
       30.48        10.55        13.25         2.53         3.48         3.68 
TCGA-DQ-5630 TCGA-F7-8489 TCGA-F7-A620 TCGA-IQ-7632 TCGA-MT-A51W TCGA-P3-A6T8 
       33.86        21.63         0.43        14.50         0.46        13.15 

$subtype7
TCGA-CN-4726 TCGA-CN-4729 TCGA-CN-5355 TCGA-CN-5364 TCGA-CQ-5330 TCGA-CQ-7063 
        4.67        12.89        16.04        16.21        29.46        48.03 
TCGA-CQ-A4C7 TCGA-CR-6491 TCGA-CR-7365 TCGA-CR-7367 TCGA-CV-6436 TCGA-CV-6934 
       11.61        11.51        39.16        47.34        62.43         2.14 
TCGA-CV-6936 TCGA-CV-7095 TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-A6JD TCGA-DQ-5631 
        5.46        18.81        84.49         7.17         5.98        18.02 
TCGA-MT-A67D 
        1.84 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
    0.07     0.10     0.20     0.07     0.07     0.13     1.84 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
  142.52   126.15   139.43    94.62   169.38   210.97    84.49 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
  17.540   15.950   14.830   21.070   16.075   15.750   16.040 
[1] "0.1 - 142.5 (17.5)" "0.1 - 126.2 (15.9)" "0.2 - 139.4 (14.8)"
[4] "0.1 - 94.6 (21.1)"  "0.1 - 169.4 (16.1)" "0.1 - 211.0 (15.8)"
[7] "1.8 - 84.5 (16.0)" 
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype3" "subtype2"
  [7] "subtype5" "subtype5" "subtype4" "subtype1" "subtype5" "subtype6"
 [13] "subtype5" "subtype4" "subtype3" "subtype1" "subtype3" "subtype4"
 [19] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype6" "subtype6" "subtype1" "subtype5" "subtype6" "subtype4"
 [31] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype3"
 [37] "subtype5" "subtype1" "subtype4" "subtype1" "subtype3" "subtype2"
 [43] "subtype6" "subtype3" "subtype5" "subtype6" "subtype5" "subtype3"
 [49] "subtype2" "subtype7" "subtype1" "subtype6" "subtype7" "subtype1"
 [55] "subtype1" "subtype6" "subtype5" "subtype3" "subtype2" "subtype1"
 [61] "subtype6" "subtype1" "subtype1" "subtype4" "subtype2" "subtype7"
 [67] "subtype1" "subtype6" "subtype6" "subtype1" "subtype3" "subtype5"
 [73] "subtype7" "subtype2" "subtype6" "subtype2" "subtype6" "subtype2"
 [79] "subtype2" "subtype4" "subtype3" "subtype3" "subtype3" "subtype4"
 [85] "subtype6" "subtype6" "subtype5" "subtype3" "subtype2" "subtype3"
 [91] "subtype6" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype3" "subtype5" "subtype2" "subtype3" "subtype2" "subtype4"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[109] "subtype5" "subtype4" "subtype5" "subtype6" "subtype6" "subtype5"
[115] "subtype2" "subtype7" "subtype6" "subtype3" "subtype5" "subtype5"
[121] "subtype2" "subtype6" "subtype2" "subtype3" "subtype6" "subtype2"
[127] "subtype2" "subtype1" "subtype6" "subtype1" "subtype6" "subtype7"
[133] "subtype2" "subtype2" "subtype2" "subtype5" "subtype2" "subtype5"
[139] "subtype6" "subtype7" "subtype1" "subtype6" "subtype5" "subtype2"
[145] "subtype3" "subtype6" "subtype3" "subtype4" "subtype1" "subtype4"
[151] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[157] "subtype4" "subtype6" "subtype2" "subtype6" "subtype4" "subtype4"
[163] "subtype4" "subtype5" "subtype4" "subtype6" "subtype7" "subtype6"
[169] "subtype2" "subtype1" "subtype7" "subtype7" "subtype4" "subtype4"
[175] "subtype3" "subtype3" "subtype2" "subtype5" "subtype3" "subtype6"
[181] "subtype6" "subtype1" "subtype5" "subtype6" "subtype6" "subtype4"
[187] "subtype5" "subtype6" "subtype3" "subtype3" "subtype6" "subtype6"
[193] "subtype6" "subtype6" "subtype5" "subtype6" "subtype1" "subtype4"
[199] "subtype2" "subtype1" "subtype4" "subtype3" "subtype4" "subtype3"
[205] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[211] "subtype4" "subtype4" "subtype5" "subtype5" "subtype2" "subtype6"
[217] "subtype2" "subtype2" "subtype5" "subtype3" "subtype2" "subtype2"
[223] "subtype4" "subtype7" "subtype4" "subtype3" "subtype7" "subtype3"
[229] "subtype7" "subtype3" "subtype5" "subtype4" "subtype3" "subtype1"
[235] "subtype5" "subtype6" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype5" "subtype5" "subtype1" "subtype5" "subtype1" "subtype2"
[247] "subtype1" "subtype6" "subtype3" "subtype6" "subtype2" "subtype1"
[253] "subtype7" "subtype5" "subtype5" "subtype4" "subtype3" "subtype2"
[259] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[265] "subtype3" "subtype6" "subtype6" "subtype1" "subtype2" "subtype1"
[271] "subtype2" "subtype3" "subtype1" "subtype5" "subtype1" "subtype3"
[277] "subtype2" "subtype3" "subtype1" "subtype4" "subtype3" "subtype1"
[283] "subtype6" "subtype5" "subtype5" "subtype3" "subtype3" "subtype2"
[289] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype5"
[295] "subtype5" "subtype1" "subtype3" "subtype3" "subtype7" "subtype6"
[301] "subtype7" "subtype1" "subtype3" "subtype2" "subtype1" "subtype6"
[307] "subtype5" "subtype5" "subtype1" "subtype7" "subtype2" "subtype3"
[313] "subtype6" "subtype1" "subtype3" "subtype6" "subtype3" "subtype2"
[319] "subtype1" "subtype6" "subtype5" "subtype5" "subtype3" "subtype6"
[325] "subtype2" "subtype6" "subtype3" "subtype2" "subtype2" "subtype3"
[331] "subtype6" "subtype7" "subtype2" "subtype3" "subtype4" "subtype4"
[337] "subtype2" "subtype4" "subtype4" "subtype1" "subtype4" "subtype1"
[343] "subtype2" "subtype6" "subtype2" "subtype3" "subtype2" "subtype2"
[349] "subtype1" "subtype3" "subtype6" "subtype3" "subtype5" "subtype5"
[355] "subtype3" "subtype5" "subtype2" "subtype4" "subtype1" "subtype1"
[361] "subtype4" "subtype5" "subtype3" "subtype5" "subtype5" "subtype4"
[367] "subtype5" "subtype4" "subtype2" "subtype1" "subtype6" "subtype5"
[373] "subtype3" "subtype3" "subtype4" "subtype2" "subtype2" "subtype2"
[379] "subtype2" "subtype1" "subtype2" "subtype6" "subtype2" "subtype5"
[385] "subtype7" "subtype5" "subtype4" "subtype4" "subtype4" "subtype3"
[391] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype2"
[397] "subtype5" "subtype2" "subtype3" "subtype2" "subtype4" "subtype5"
[403] "subtype6" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype3" "subtype2"
  [7] "subtype5" "subtype5" "subtype4" "subtype1" "subtype5" "subtype6"
 [13] "subtype5" "subtype4" "subtype3" "subtype1" "subtype3" "subtype4"
 [19] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype6" "subtype6" "subtype1" "subtype5" "subtype6" "subtype4"
 [31] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype3"
 [37] "subtype5" "subtype1" "subtype4" "subtype1" "subtype3" "subtype2"
 [43] "subtype6" "subtype3" "subtype5" "subtype6" "subtype5" "subtype3"
 [49] "subtype2" "subtype7" "subtype1" "subtype6" "subtype7" "subtype1"
 [55] "subtype1" "subtype6" "subtype5" "subtype3" "subtype2" "subtype1"
 [61] "subtype6" "subtype1" "subtype1" "subtype4" "subtype2" "subtype7"
 [67] "subtype1" "subtype6" "subtype6" "subtype1" "subtype3" "subtype5"
 [73] "subtype7" "subtype2" "subtype6" "subtype2" "subtype6" "subtype2"
 [79] "subtype2" "subtype4" "subtype3" "subtype3" "subtype3" "subtype4"
 [85] "subtype6" "subtype6" "subtype5" "subtype3" "subtype2" "subtype3"
 [91] "subtype6" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype3" "subtype5" "subtype2" "subtype3" "subtype2" "subtype4"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[109] "subtype5" "subtype4" "subtype5" "subtype6" "subtype6" "subtype5"
[115] "subtype2" "subtype7" "subtype6" "subtype3" "subtype5" "subtype5"
[121] "subtype2" "subtype6" "subtype2" "subtype3" "subtype6" "subtype2"
[127] "subtype2" "subtype1" "subtype6" "subtype1" "subtype6" "subtype7"
[133] "subtype2" "subtype2" "subtype2" "subtype5" "subtype2" "subtype5"
[139] "subtype6" "subtype7" "subtype1" "subtype6" "subtype5" "subtype2"
[145] "subtype3" "subtype6" "subtype3" "subtype4" "subtype1" "subtype4"
[151] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[157] "subtype4" "subtype6" "subtype2" "subtype6" "subtype4" "subtype4"
[163] "subtype4" "subtype5" "subtype4" "subtype6" "subtype7" "subtype6"
[169] "subtype2" "subtype1" "subtype7" "subtype7" "subtype4" "subtype4"
[175] "subtype3" "subtype3" "subtype2" "subtype5" "subtype3" "subtype6"
[181] "subtype6" "subtype1" "subtype5" "subtype6" "subtype6" "subtype4"
[187] "subtype5" "subtype6" "subtype3" "subtype3" "subtype6" "subtype6"
[193] "subtype6" "subtype6" "subtype5" "subtype6" "subtype1" "subtype4"
[199] "subtype2" "subtype1" "subtype4" "subtype3" "subtype4" "subtype3"
[205] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[211] "subtype4" "subtype4" "subtype5" "subtype5" "subtype2" "subtype6"
[217] "subtype2" "subtype2" "subtype5" "subtype3" "subtype2" "subtype2"
[223] "subtype4" "subtype7" "subtype4" "subtype3" "subtype7" "subtype3"
[229] "subtype7" "subtype3" "subtype5" "subtype4" "subtype3" "subtype1"
[235] "subtype5" "subtype6" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype5" "subtype5" "subtype1" "subtype5" "subtype1" "subtype2"
[247] "subtype1" "subtype6" "subtype3" "subtype6" "subtype2" "subtype1"
[253] "subtype7" "subtype5" "subtype5" "subtype4" "subtype3" "subtype2"
[259] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[265] "subtype3" "subtype6" "subtype6" "subtype1" "subtype2" "subtype1"
[271] "subtype2" "subtype3" "subtype1" "subtype5" "subtype1" "subtype3"
[277] "subtype2" "subtype3" "subtype1" "subtype4" "subtype3" "subtype1"
[283] "subtype6" "subtype5" "subtype5" "subtype3" "subtype3" "subtype2"
[289] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype5"
[295] "subtype5" "subtype1" "subtype3" "subtype3" "subtype7" "subtype6"
[301] "subtype7" "subtype1" "subtype3" "subtype2" "subtype1" "subtype6"
[307] "subtype5" "subtype5" "subtype1" "subtype7" "subtype2" "subtype3"
[313] "subtype6" "subtype1" "subtype3" "subtype6" "subtype3" "subtype2"
[319] "subtype1" "subtype6" "subtype5" "subtype5" "subtype3" "subtype6"
[325] "subtype2" "subtype6" "subtype3" "subtype2" "subtype2" "subtype3"
[331] "subtype6" "subtype7" "subtype2" "subtype3" "subtype4" "subtype4"
[337] "subtype2" "subtype4" "subtype4" "subtype1" "subtype4" "subtype1"
[343] "subtype2" "subtype6" "subtype2" "subtype3" "subtype2" "subtype2"
[349] "subtype1" "subtype3" "subtype6" "subtype3" "subtype5" "subtype5"
[355] "subtype3" "subtype5" "subtype2" "subtype4" "subtype1" "subtype1"
[361] "subtype4" "subtype5" "subtype3" "subtype5" "subtype5" "subtype4"
[367] "subtype5" "subtype4" "subtype2" "subtype1" "subtype6" "subtype5"
[373] "subtype3" "subtype3" "subtype4" "subtype2" "subtype2" "subtype2"
[379] "subtype2" "subtype1" "subtype2" "subtype6" "subtype2" "subtype5"
[385] "subtype7" "subtype5" "subtype4" "subtype4" "subtype4" "subtype3"
[391] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype2"
[397] "subtype5" "subtype2" "subtype3" "subtype2" "subtype4" "subtype5"
[403] "subtype6" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype3" "subtype2"
  [7] "subtype5" "subtype5" "subtype4" "subtype1" "subtype5" "subtype6"
 [13] "subtype5" "subtype4" "subtype3" "subtype1" "subtype3" "subtype4"
 [19] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype6" "subtype6" "subtype1" "subtype5" "subtype6" "subtype4"
 [31] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype3"
 [37] "subtype5" "subtype1" "subtype4" "subtype1" "subtype3" "subtype2"
 [43] "subtype6" "subtype3" "subtype5" "subtype6" "subtype5" "subtype3"
 [49] "subtype2" "subtype7" "subtype1" "subtype6" "subtype7" "subtype1"
 [55] "subtype1" "subtype6" "subtype5" "subtype3" "subtype2" "subtype1"
 [61] "subtype6" "subtype1" "subtype1" "subtype4" "subtype2" "subtype7"
 [67] "subtype1" "subtype6" "subtype6" "subtype1" "subtype3" "subtype5"
 [73] "subtype7" "subtype2" "subtype6" "subtype2" "subtype6" "subtype2"
 [79] "subtype2" "subtype4" "subtype3" "subtype3" "subtype3" "subtype4"
 [85] "subtype6" "subtype6" "subtype5" "subtype3" "subtype2" "subtype3"
 [91] "subtype6" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype3" "subtype5" "subtype2" "subtype3" "subtype2" "subtype4"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[109] "subtype5" "subtype4" "subtype5" "subtype6" "subtype6" "subtype5"
[115] "subtype2" "subtype7" "subtype6" "subtype3" "subtype5" "subtype5"
[121] "subtype2" "subtype6" "subtype2" "subtype3" "subtype6" "subtype2"
[127] "subtype2" "subtype1" "subtype6" "subtype1" "subtype6" "subtype7"
[133] "subtype2" "subtype2" "subtype2" "subtype5" "subtype2" "subtype5"
[139] "subtype6" "subtype7" "subtype1" "subtype6" "subtype5" "subtype2"
[145] "subtype3" "subtype6" "subtype3" "subtype4" "subtype1" "subtype4"
[151] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[157] "subtype4" "subtype6" "subtype2" "subtype6" "subtype4" "subtype4"
[163] "subtype4" "subtype5" "subtype4" "subtype6" "subtype7" "subtype6"
[169] "subtype2" "subtype1" "subtype7" "subtype7" "subtype4" "subtype4"
[175] "subtype3" "subtype3" "subtype2" "subtype5" "subtype3" "subtype6"
[181] "subtype6" "subtype1" "subtype5" "subtype6" "subtype6" "subtype4"
[187] "subtype5" "subtype6" "subtype3" "subtype3" "subtype6" "subtype6"
[193] "subtype6" "subtype6" "subtype5" "subtype6" "subtype1" "subtype4"
[199] "subtype2" "subtype1" "subtype4" "subtype3" "subtype4" "subtype3"
[205] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[211] "subtype4" "subtype4" "subtype5" "subtype5" "subtype2" "subtype6"
[217] "subtype2" "subtype2" "subtype5" "subtype3" "subtype2" "subtype2"
[223] "subtype4" "subtype7" "subtype4" "subtype3" "subtype7" "subtype3"
[229] "subtype7" "subtype3" "subtype5" "subtype4" "subtype3" "subtype1"
[235] "subtype5" "subtype6" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype5" "subtype5" "subtype1" "subtype5" "subtype1" "subtype2"
[247] "subtype1" "subtype6" "subtype3" "subtype6" "subtype2" "subtype1"
[253] "subtype7" "subtype5" "subtype5" "subtype4" "subtype3" "subtype2"
[259] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[265] "subtype3" "subtype6" "subtype6" "subtype1" "subtype2" "subtype1"
[271] "subtype2" "subtype3" "subtype1" "subtype5" "subtype1" "subtype3"
[277] "subtype2" "subtype3" "subtype1" "subtype4" "subtype3" "subtype1"
[283] "subtype6" "subtype5" "subtype5" "subtype3" "subtype3" "subtype2"
[289] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype5"
[295] "subtype5" "subtype1" "subtype3" "subtype3" "subtype7" "subtype6"
[301] "subtype7" "subtype1" "subtype3" "subtype2" "subtype1" "subtype6"
[307] "subtype5" "subtype5" "subtype1" "subtype7" "subtype2" "subtype3"
[313] "subtype6" "subtype1" "subtype3" "subtype6" "subtype3" "subtype2"
[319] "subtype1" "subtype6" "subtype5" "subtype5" "subtype3" "subtype6"
[325] "subtype2" "subtype6" "subtype3" "subtype2" "subtype2" "subtype3"
[331] "subtype6" "subtype7" "subtype2" "subtype3" "subtype4" "subtype4"
[337] "subtype2" "subtype4" "subtype4" "subtype1" "subtype4" "subtype1"
[343] "subtype2" "subtype6" "subtype2" "subtype3" "subtype2" "subtype2"
[349] "subtype1" "subtype3" "subtype6" "subtype3" "subtype5" "subtype5"
[355] "subtype3" "subtype5" "subtype2" "subtype4" "subtype1" "subtype1"
[361] "subtype4" "subtype5" "subtype3" "subtype5" "subtype5" "subtype4"
[367] "subtype5" "subtype4" "subtype2" "subtype1" "subtype6" "subtype5"
[373] "subtype3" "subtype3" "subtype4" "subtype2" "subtype2" "subtype2"
[379] "subtype2" "subtype1" "subtype2" "subtype6" "subtype2" "subtype5"
[385] "subtype7" "subtype5" "subtype4" "subtype4" "subtype4" "subtype3"
[391] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype2"
[397] "subtype5" "subtype2" "subtype3" "subtype2" "subtype4" "subtype5"
[403] "subtype6" "subtype2"
D2V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1       1        9        10        30         1
  subtype2       9       13        16        31         1
  subtype3       2        8        11        45         2
  subtype4       2        5         9        18         1
  subtype5       3       14         7        28         3
  subtype6       6       11        11        30         0
  subtype7       1        3         2        11         0
D2V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  3 13 13 22
  subtype2 11 24 23 13
  subtype3  4 15 16 34
  subtype4  7 13  8  9
  subtype5  3 16 11 25
  subtype6 10 20 10 19
  subtype7  1  4  4  8
D2V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 24  6 17  1
  subtype2 28  8 25  1
  subtype3 17  9 34  2
  subtype4 11  8 13  1
  subtype5 27  7 11  2
  subtype6 23 10 22  0
  subtype7  5  4  6  0
D2V5, multiclass
D2V6, binary
          cls
clus        0  1
  subtype1 11  8
  subtype2 20  8
  subtype3 13  7
  subtype4 13  8
  subtype5 12 10
  subtype6 29  2
  subtype7  6  0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   11    8
  subtype2   20    8
  subtype3   13    7
  subtype4   13    8
  subtype5   12   10
  subtype6   29    2
  subtype7    6    0
D2V7, binary
          cls
clus        0  1
  subtype1 11 45
  subtype2 29 49
  subtype3 17 62
  subtype4  6 51
  subtype5 30 28
  subtype6 20 42
  subtype7  5 14
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   11   45
  subtype2   29   49
  subtype3   17   62
  subtype4    6   51
  subtype5   30   28
  subtype6   20   42
  subtype7    5   14
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                    55
  subtype2                                    77
  subtype3                                    78
  subtype4                                    53
  subtype5                                    58
  subtype6                                    62
  subtype7                                    19
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  subtype1                                                           0
  subtype2                                                           1
  subtype3                                                           0
  subtype4                                                           0
  subtype5                                                           0
  subtype6                                                           0
  subtype7                                                           0
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  subtype1                                                   1
  subtype2                                                   0
  subtype3                                                   1
  subtype4                                                   4
  subtype5                                                   0
  subtype6                                                   0
  subtype7                                                   0
D2V8, multiclass
D2V9, binary
          cls
clus        0  1
  subtype1 11 45
  subtype2 13 65
  subtype3 19 60
  subtype4 13 44
  subtype5  6 52
  subtype6 14 48
  subtype7  5 14
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   11   45
  subtype2   13   65
  subtype3   19   60
  subtype4   13   44
  subtype5    6   52
  subtype6   14   48
  subtype7    5   14
D2V10, continuous
D2V11, continuous
D2V12, continuous

Clustering(3) Variable = RPPA_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 22 33
  subtype2 29 23
  subtype3 16 21
  subtype4 28 40
subtype1 subtype2 subtype3 subtype4 
      55       52       37       68 
subtype1 subtype2 subtype3 subtype4 
      33       23       21       40 
$subtype1
TCGA-BA-4074 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-6870 
       15.19         8.15        23.74        23.84        20.48        14.83 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       23.70        15.95         4.67        14.86        20.15        12.89 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-5359 TCGA-CN-5363 
       21.11        21.11        14.33        34.68        12.39         8.32 
TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-6018 TCGA-CN-6020 TCGA-CQ-5326 
       16.21        11.84        12.49         1.48         3.22         2.93 
TCGA-CQ-5329 TCGA-CQ-6219 TCGA-CQ-6222 TCGA-CV-5431 TCGA-CV-5439 TCGA-CV-5443 
       46.75        15.75        46.26        17.16        17.95        91.53 
TCGA-CV-5971 TCGA-CV-6942 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6955 TCGA-CV-6959 
       23.05       126.08        12.03        15.09        10.98         8.42 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7099 
       28.34         2.50         4.14        64.83       126.15         7.99 
TCGA-CV-7100 TCGA-CV-7247 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7406 
        9.01        18.97         4.96        11.87        47.97        57.47 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6823 TCGA-DQ-7592 
        6.38        22.19        27.22        13.25        23.05         9.83 
TCGA-IQ-7630 
       15.95 

$subtype2
TCGA-BA-4078 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6869 
        9.07        42.35        57.93        17.10        57.44        21.17 
TCGA-BA-6871 TCGA-BB-4217 TCGA-CN-4730 TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5356 
        2.07         6.15        15.19        41.69        16.04        16.83 
TCGA-CN-5361 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6023 TCGA-CN-6024 
        6.38         9.53        14.73        14.24        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6997 TCGA-CQ-5324 
       10.45        20.09        12.95         3.68        13.08        39.68 
TCGA-CQ-5332 TCGA-CQ-6228 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 
       10.42        14.99       139.43       129.21       108.33       107.51 
TCGA-CV-5441 TCGA-CV-6433 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6939 
       94.88        21.07         9.60        90.12         9.70        21.90 
TCGA-CV-6948 TCGA-CV-6954 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7242 TCGA-CV-7248 
       42.38        65.82       111.16        12.66        36.00        17.13 
TCGA-CV-7261 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7429 
       36.13        22.85        25.94        34.09        14.89         3.52 
TCGA-CV-7433 TCGA-CV-7437 TCGA-D6-6827 TCGA-DQ-7591 
       19.76        16.64        18.67        20.45 

$subtype3
TCGA-BA-6872 TCGA-BA-6873 TCGA-CN-4722 TCGA-CN-5365 TCGA-CN-6011 TCGA-CN-6021 
       12.62         3.72        26.27        11.54        13.94         9.07 
TCGA-CQ-5323 TCGA-CQ-5331 TCGA-CQ-6220 TCGA-CQ-7068 TCGA-CV-5442 TCGA-CV-5966 
       48.20        45.99        32.38        43.04        76.50        17.06 
TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6936 TCGA-CV-6937 
       60.49        43.23        54.74        62.43         5.46        20.52 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-7177 TCGA-CV-7178 
       26.43        11.24         6.08        53.95        21.80        71.21 
TCGA-CV-7180 TCGA-CV-7245 TCGA-CV-7250 TCGA-CV-7413 TCGA-CV-7427 TCGA-CV-7428 
       10.75        26.20        95.34         9.67       156.49        54.94 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6825 
       16.27        84.49         7.17         7.79        25.41        16.14 
TCGA-IQ-7632 
       14.50 

$subtype4
TCGA-CN-4731 TCGA-CN-4734 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-4742 
       32.65        24.92        12.99        17.79        26.66        13.05 
TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5367 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6012 
        5.69        35.54        11.57         8.52        22.45        20.68 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6994 TCGA-CN-6996 
       10.39        20.68        12.85         6.64         3.91        14.20 
TCGA-CN-6998 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5334 TCGA-CQ-6218 
        1.51        21.50        54.58        29.46         4.24        28.60 
TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7065 
       32.88        32.38        13.25         4.24        26.79        33.11 
TCGA-CV-5436 TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 
       19.20        80.12        13.35        86.83        48.59         7.07 
TCGA-CV-6934 TCGA-CV-6938 TCGA-CV-6943 TCGA-CV-6951 TCGA-CV-6956 TCGA-CV-7095 
        2.14         4.73        19.79        30.08         7.13        18.81 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7183 TCGA-CV-7235 
        5.26         1.84        52.31        12.92       114.97        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7407 
        4.73        47.47        31.36         2.10        18.41        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7423 
      210.97        89.33         0.46        25.08         0.07       100.57 
TCGA-CV-7425 TCGA-CV-7435 TCGA-CV-7446 TCGA-CV-7568 TCGA-CX-7085 TCGA-D6-6517 
       56.48       142.52        35.93        30.48        10.55         9.60 
TCGA-D6-6824 TCGA-D6-6826 
        2.53         5.06 

subtype1 subtype2 subtype3 subtype4 
    1.48     2.07     3.72     0.07 
subtype1 subtype2 subtype3 subtype4 
  126.15   139.43   156.49   210.97 
subtype1 subtype2 subtype3 subtype4 
  15.750   17.900   25.410   19.495 
[1] "1.5 - 126.2 (15.8)" "2.1 - 139.4 (17.9)" "3.7 - 156.5 (25.4)"
[4] "0.1 - 211.0 (19.5)"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [13] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
 [31] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [37] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype4" "subtype1" "subtype4"
 [49] "subtype4" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
 [55] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
 [61] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype4" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
 [73] "subtype2" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
 [79] "subtype3" "subtype2" "subtype4" "subtype4" "subtype1" "subtype3"
 [85] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
 [91] "subtype4" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
 [97] "subtype2" "subtype4" "subtype1" "subtype2" "subtype2" "subtype3"
[103] "subtype1" "subtype4" "subtype3" "subtype4" "subtype1" "subtype4"
[109] "subtype4" "subtype3" "subtype4" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype2" "subtype4" "subtype2" "subtype3"
[121] "subtype3" "subtype4" "subtype2" "subtype3" "subtype3" "subtype1"
[127] "subtype4" "subtype1" "subtype2" "subtype1" "subtype4" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
[145] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[151] "subtype4" "subtype3" "subtype3" "subtype3" "subtype4" "subtype4"
[157] "subtype4" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
[169] "subtype2" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[175] "subtype3" "subtype4" "subtype2" "subtype4" "subtype2" "subtype4"
[181] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype4"
[193] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype4" "subtype1"
[205] "subtype4" "subtype3" "subtype4" "subtype2" "subtype2" "subtype1"
[211] "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [13] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
 [31] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [37] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype4" "subtype1" "subtype4"
 [49] "subtype4" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
 [55] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
 [61] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype4" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
 [73] "subtype2" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
 [79] "subtype3" "subtype2" "subtype4" "subtype4" "subtype1" "subtype3"
 [85] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
 [91] "subtype4" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
 [97] "subtype2" "subtype4" "subtype1" "subtype2" "subtype2" "subtype3"
[103] "subtype1" "subtype4" "subtype3" "subtype4" "subtype1" "subtype4"
[109] "subtype4" "subtype3" "subtype4" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype2" "subtype4" "subtype2" "subtype3"
[121] "subtype3" "subtype4" "subtype2" "subtype3" "subtype3" "subtype1"
[127] "subtype4" "subtype1" "subtype2" "subtype1" "subtype4" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
[145] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[151] "subtype4" "subtype3" "subtype3" "subtype3" "subtype4" "subtype4"
[157] "subtype4" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
[169] "subtype2" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[175] "subtype3" "subtype4" "subtype2" "subtype4" "subtype2" "subtype4"
[181] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype4"
[193] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype4" "subtype1"
[205] "subtype4" "subtype3" "subtype4" "subtype2" "subtype2" "subtype1"
[211] "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [13] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
 [31] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [37] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype4" "subtype1" "subtype4"
 [49] "subtype4" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
 [55] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
 [61] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype4" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
 [73] "subtype2" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
 [79] "subtype3" "subtype2" "subtype4" "subtype4" "subtype1" "subtype3"
 [85] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
 [91] "subtype4" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
 [97] "subtype2" "subtype4" "subtype1" "subtype2" "subtype2" "subtype3"
[103] "subtype1" "subtype4" "subtype3" "subtype4" "subtype1" "subtype4"
[109] "subtype4" "subtype3" "subtype4" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype2" "subtype4" "subtype2" "subtype3"
[121] "subtype3" "subtype4" "subtype2" "subtype3" "subtype3" "subtype1"
[127] "subtype4" "subtype1" "subtype2" "subtype1" "subtype4" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
[145] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[151] "subtype4" "subtype3" "subtype3" "subtype3" "subtype4" "subtype4"
[157] "subtype4" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
[169] "subtype2" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[175] "subtype3" "subtype4" "subtype2" "subtype4" "subtype2" "subtype4"
[181] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype4"
[193] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype4" "subtype1"
[205] "subtype4" "subtype3" "subtype4" "subtype2" "subtype2" "subtype1"
[211] "subtype1" "subtype3"
D3V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1       1       14         9        28         1
  subtype2       2        4         7        33         1
  subtype3       3        8         6        16         1
  subtype4       3       13         9        40         1
D3V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  3 19 12 19
  subtype2  3  6 14 25
  subtype3  3 13  6 13
  subtype4  4 21 21 22
D3V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 20  5 19  1
  subtype2 15  3 25  1
  subtype3 17  5  8  1
  subtype4 20  8 27  1
D3V5, multiclass
D3V6, binary
          cls
clus       0
  subtype1 9
  subtype2 6
  subtype3 1
  subtype4 6
[1] "NOT AVAILABLE: table only has an event [0]"
D3V7, binary
          cls
clus        0  1
  subtype1 13 42
  subtype2  7 45
  subtype3 15 22
  subtype4 27 41
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13   42
  subtype2    7   45
  subtype3   15   22
  subtype4   27   41
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       13        7       15       27
  MALE         42       45       22       41
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                    55
  subtype2                                    52
  subtype3                                    37
  subtype4                                    68
[1] "NOT AVAILABLE: table dimension [4x1]"
D3V9, binary
          cls
clus        0  1
  subtype1 21 34
  subtype2 20 32
  subtype3  4 33
  subtype4 16 52
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   21   34
  subtype2   20   32
  subtype3    4   33
  subtype4   16   52
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        21       20        4       16
  YES       34       32       33       52
D3V10, continuous
D3V11, continuous
D3V12, continuous

Clustering(4) Variable = RPPA_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1 12  5
  subtype2 33 40
  subtype3 50 72
subtype1 subtype2 subtype3 
      17       73      122 
subtype1 subtype2 subtype3 
       5       40       72 
$subtype1
TCGA-BA-5152 TCGA-BA-5559 TCGA-BA-6871 TCGA-CN-5361 TCGA-CN-5366 TCGA-CN-5374 
       42.35        57.44         2.07         6.38        11.84         9.53 
TCGA-CN-6013 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6989 TCGA-CQ-5324 TCGA-CV-5430 
       14.24         9.07        13.94        20.09        39.68       139.43 
TCGA-CV-6433 TCGA-CV-6939 TCGA-CV-7418 TCGA-DQ-7591 TCGA-IQ-7630 
       21.07        21.90        25.94        20.45        15.95 

$subtype2
TCGA-BA-4074 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-6870 
       15.19         8.15        23.74        23.84        20.48        14.83 
TCGA-BA-6873 TCGA-BB-4217 TCGA-CN-4723 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4733 
        3.72         6.15        23.70        14.86        12.89        21.11 
TCGA-CN-4735 TCGA-CN-4739 TCGA-CN-5355 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 
       21.11        34.68        16.04        12.39         8.32        16.21 
TCGA-CN-5369 TCGA-CN-6011 TCGA-CN-6018 TCGA-CN-6020 TCGA-CQ-5326 TCGA-CQ-5329 
       12.49        13.94         1.48         3.22         2.93        46.75 
TCGA-CQ-5331 TCGA-CQ-6219 TCGA-CQ-6220 TCGA-CQ-7068 TCGA-CV-5431 TCGA-CV-5432 
       45.99        15.75        32.38        43.04        17.16       129.21 
TCGA-CV-5439 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5977 TCGA-CV-5979 
       17.95        91.53        17.06        23.05        60.49        43.23 
TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6936 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6945 
       54.74        62.43         5.46        26.43       126.08        12.03 
TCGA-CV-6950 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
       15.09        10.98         8.42         2.50         4.14        64.83 
TCGA-CV-7090 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
      126.15         7.99         9.01        71.21        10.75       114.97 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       18.97        17.13         4.96        11.87        47.97        36.13 
TCGA-CV-7406 TCGA-CV-7422 TCGA-CV-7427 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7438 
       57.47        34.09       156.49        16.27        84.49         6.38 
TCGA-CV-7440 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6825 
       22.19        27.22        13.25        25.41        23.05        16.14 
TCGA-DQ-7592 
        9.83 

$subtype3
TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-6869 TCGA-BA-6872 TCGA-CN-4722 
        9.07        57.93        17.10        21.17        12.62        26.27 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4734 
       15.95         4.67        20.15        15.19        32.65        24.92 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.99        17.79        14.33        26.66        41.69        13.05 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5370 
       16.83         5.69        35.54        11.54        11.57         8.52 
TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 
       22.45        14.73        20.68        10.39        20.68        12.85 
TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        6.64         7.36        10.45        12.95         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5325 TCGA-CQ-5327 
       14.20        13.08         1.51        48.20        21.50        54.58 
TCGA-CQ-5330 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6222 
       29.46        10.42         4.24        28.60        32.88        46.26 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 
       32.38        13.25         4.24        14.99        26.79        33.11 
TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5444 
      108.33        19.20       107.51        94.88        76.50        80.12 
TCGA-CV-5970 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-6441 TCGA-CV-6933 
       13.35        86.83        48.59         7.07         9.60        90.12 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6941 TCGA-CV-6943 
        2.14         9.70        20.52         4.73        11.24        19.79 
TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6956 
       42.38        30.08         6.08        53.95        65.82         7.13 
TCGA-CV-6960 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7102 
       28.34       111.16        18.81        12.66         5.26         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       52.31        12.92        21.80        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7250 TCGA-CV-7255 TCGA-CV-7263 
       36.00        31.36        26.20        95.34         2.10        18.41 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       35.54       210.97        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7428 
       25.08         0.07       100.57        14.89        56.48        54.94 
TCGA-CV-7429 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7446 
        3.52        19.76         7.17       142.52        16.64        35.93 
TCGA-CV-7568 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6826 
       30.48        10.55         7.79         9.60         2.53         5.06 
TCGA-D6-6827 TCGA-IQ-7632 
       18.67        14.50 

subtype1 subtype2 subtype3 
    2.07     1.48     0.07 
subtype1 subtype2 subtype3 
  139.43   156.49   210.97 
subtype1 subtype2 subtype3 
   20.09    17.16    18.54 
[1] "2.1 - 139.4 (20.1)" "1.5 - 156.5 (17.2)" "0.1 - 211.0 (18.5)"
  [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [61] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[205] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[211] "subtype1" "subtype3"
  [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [61] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[205] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[211] "subtype1" "subtype3"
  [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [61] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[205] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[211] "subtype1" "subtype3"
D4V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1       0        2         1        10         0
  subtype2       3       17        12        37         1
  subtype3       6       20        18        70         3
D4V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  0  3  3  7
  subtype2  5 25 12 29
  subtype3  8 31 38 43
D4V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1  4  0  9  0
  subtype2 28  9 22  1
  subtype3 40 12 48  3
D4V5, multiclass
D4V6, binary
          cls
clus        0
  subtype1  6
  subtype2  6
  subtype3 10
[1] "NOT AVAILABLE: table only has an event [0]"
D4V7, binary
          cls
clus        0  1
  subtype1  2 15
  subtype2 22 51
  subtype3 38 84
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2   15
  subtype2   22   51
  subtype3   38   84
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        2       22       38
  MALE         15       51       84
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                    17
  subtype2                                    73
  subtype3                                   122
[1] "NOT AVAILABLE: table dimension [3x1]"
D4V9, binary
          cls
clus        0  1
  subtype1  8  9
  subtype2 20 53
  subtype3 33 89
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8    9
  subtype2   20   53
  subtype3   33   89
     clus
vv    subtype1 subtype2 subtype3
  NO         8       20       33
  YES        9       53       89
D4V10, continuous
D4V11, continuous
D4V12, continuous

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2        0   1
  subtype1 103  53
  subtype2  66  52
  subtype3  74  46
subtype1 subtype2 subtype3 
     156      118      120 
subtype1 subtype2 subtype3 
      53       52       46 
$subtype1
TCGA-BA-4074 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-6868 
       15.19        37.28         9.07        57.93        17.10         6.25 
TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BB-4217 
       21.17         2.07         7.76        29.42        16.87         6.15 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7864 
       94.62         4.60        18.35        10.19        17.62        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8601 TCGA-CN-4723 TCGA-CN-4727 
       20.98        37.91        14.07        20.52        23.70        14.86 
TCGA-CN-4731 TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-5356 
       32.65        21.11        14.33        34.68        41.69        16.83 
TCGA-CN-5360 TCGA-CN-5361 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6021 
       35.54         6.38         9.53        14.73        20.68         9.07 
TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 TCGA-CN-A49B 
       13.94        10.45        12.95         3.91        13.08        14.70 
TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63W TCGA-CQ-5323 TCGA-CQ-5332 TCGA-CQ-6221 
        7.40        17.29        11.44        48.20        10.42        32.88 
TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CG 
       13.25        14.99        20.15        17.92        18.02        12.85 
TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       19.99        84.23        11.77        54.67        37.87        26.27 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 TCGA-CR-6481 
       58.42        50.01        34.52        36.99         6.02        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 
       11.34        11.64         7.69        47.18        40.93        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7385 TCGA-CR-7388 TCGA-CR-7389 
        3.45         3.09         0.99        32.78        27.06        12.89 
TCGA-CR-7393 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
       29.85         5.13         5.95        29.95        48.39       139.43 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5443 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6933 
       17.16       129.21        91.53         7.07        21.07        90.12 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 
        9.70         5.46        20.52        21.90        11.24       126.08 
TCGA-CV-6948 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7177 
       42.38        28.34         4.14         9.01         5.26        21.80 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 
       56.68         4.73        36.00        26.20        17.13        95.34 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       11.87        47.97        36.13        35.54        17.85       210.97 
TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7430 
        0.46        25.94         0.07        34.09        14.89        16.27 
TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A461 TCGA-CV-A6JD TCGA-D6-6823 TCGA-D6-6824 
       16.64        22.19        67.86         5.98        23.05         2.53 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5629 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
        5.06        18.67        16.96        18.90        25.48        20.45 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8489 
       12.13        12.10        10.65        11.18        18.54        21.63 
TCGA-F7-A50I TCGA-HD-7754 TCGA-HD-8314 TCGA-HD-A634 TCGA-HL-7533 TCGA-IQ-7631 
        3.02         0.82         1.45         0.33        34.75         4.01 
TCGA-IQ-A61G TCGA-IQ-A61I TCGA-KU-A66S TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 
       11.84         0.07         7.36         8.35        29.92        15.78 
TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6T0 TCGA-P3-A6T6 TCGA-QK-A64Z 
       23.70        10.85        36.82        19.00        12.99        18.18 

$subtype2
TCGA-BA-4075 TCGA-BA-5149 TCGA-BA-5559 TCGA-BA-6873 TCGA-BA-A6DB TCGA-BB-7872 
        9.30         8.15        57.44         3.72         7.10        14.33 
TCGA-BB-8596 TCGA-CN-4725 TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 
       71.05        15.95        20.15        21.11        12.99        17.79 
TCGA-CN-4740 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 
       26.66        16.04         5.69         8.32        16.21        11.84 
TCGA-CN-5367 TCGA-CN-5370 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       11.57         8.52        14.24        10.39        20.68         1.48 
TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6995 TCGA-CN-6996 
       12.85         6.64         7.36        20.09         3.68        14.20 
TCGA-CN-A642 TCGA-CQ-5325 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5333 TCGA-CQ-6219 
        2.70        21.50        46.75        29.46        11.21        15.75 
TCGA-CQ-6222 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7067 TCGA-CQ-A4C6 
       46.26        32.38         4.24        26.79        16.73        31.82 
TCGA-CQ-A4C7 TCGA-CQ-A4CH TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6488 TCGA-CR-7365 
       11.61         9.96        18.54        16.90        12.46        39.16 
TCGA-CR-7372 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 
       24.95        31.96         9.17        26.17        17.13        47.01 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7397 TCGA-CR-7401 TCGA-CV-5434 TCGA-CV-5435 
       30.02        31.10         7.10        35.41       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       19.20       107.51        80.12        17.06        13.35        23.05 
TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6940 TCGA-CV-6950 
       48.59        43.23         9.60         2.14        26.43        15.09 
TCGA-CV-6951 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7095 TCGA-CV-7097 
       30.08         7.13         8.42         2.50        18.81        12.66 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7238 TCGA-CV-7243 
        1.84        52.31        12.92        71.21        47.47        31.36 
TCGA-CV-7247 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7415 TCGA-CV-7429 TCGA-CV-7435 
       18.97        18.41        57.47        22.85         3.52       142.52 
TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6825 TCGA-D6-8568 
        6.38        10.42        10.55        13.25        16.14         3.48 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 
        4.21         3.68        58.45        35.54        33.86        18.02 
TCGA-DQ-7592 TCGA-F7-8298 TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-HD-7753 
        9.83        16.11        12.62         0.46         0.43         0.16 
TCGA-HD-8224 TCGA-HD-8635 TCGA-IQ-A61E TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61O 
        1.81         0.82        19.33        13.55        14.47        11.84 
TCGA-P3-A5QA TCGA-P3-A6SX TCGA-P3-A6T2 TCGA-P3-A6T8 
       54.31        47.01        63.02        13.15 

$subtype3
TCGA-BA-4076 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       13.64        23.74        42.35        23.84        20.48        53.79 
TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BB-4224 
       14.83        12.62        11.54         5.69         5.98         9.14 
TCGA-BB-7863 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4726 TCGA-CN-4729 
       13.91         0.16         0.13        26.27         4.67        12.89 
TCGA-CN-4730 TCGA-CN-4734 TCGA-CN-4742 TCGA-CN-5359 TCGA-CN-5365 TCGA-CN-5369 
       15.19        24.92        13.05        12.39        11.54        12.49 
TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6020 TCGA-CN-6998 TCGA-CN-A641 TCGA-CQ-5324 
       22.45        13.94         3.22         1.51        12.07        39.68 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
        2.93        54.58        45.99         4.24        28.60        32.38 
TCGA-CQ-6223 TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 
       34.75        48.03        33.11        43.04        29.62        28.83 
TCGA-CQ-A4CE TCGA-CR-6471 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7367 
       12.92        39.52        11.51        15.75         9.27        47.34 
TCGA-CR-7373 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7390 TCGA-CR-7394 TCGA-CR-7395 
       29.23        34.06        19.92        29.82        29.52        30.58 
TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6003 
       17.95        94.88        76.50        86.83        60.49        54.74 
TCGA-CV-6436 TCGA-CV-6938 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6952 TCGA-CV-6953 
       62.43         4.73        19.79        12.03         6.08        53.95 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7099 
       65.82        10.98        64.83       126.15       111.16         7.99 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7252 TCGA-CV-7255 TCGA-CV-7411 TCGA-CV-7413 
       10.75       114.97         4.96         2.10        89.33         9.67 
TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7432 
       25.08       100.57        56.48       156.49        54.94        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A6JE TCGA-CX-7086 
       19.76         7.17        27.98       169.38        24.66         7.79 
TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-A4ZB TCGA-DQ-7588 TCGA-F7-A50G 
       27.22        25.41         9.60         3.42        14.04         0.49 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
       19.23         0.10         0.20        13.38         1.91         4.37 
TCGA-HD-7229 TCGA-HD-7917 TCGA-HD-8634 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A6I0 
        0.07         1.22         0.79         0.36         1.61         1.08 
TCGA-IQ-7630 TCGA-IQ-7632 TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
       15.95        14.50         6.90         0.46         1.12        12.89 
TCGA-MT-A67D TCGA-MT-A67F TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T7 
        1.84         3.65        18.97         2.04        29.00        16.01 

subtype1 subtype2 subtype3 
    0.07     0.16     0.07 
subtype1 subtype2 subtype3 
  210.97   142.52   169.38 
subtype1 subtype2 subtype3 
  17.225   16.075   15.470 
[1] "0.1 - 211.0 (17.2)" "0.2 - 142.5 (16.1)" "0.1 - 169.4 (15.5)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [25] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [55] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [67] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [79] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [97] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[115] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[121] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[127] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[151] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[163] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[175] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[187] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[193] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[199] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[205] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[217] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[223] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[229] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[235] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[241] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[247] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[253] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[259] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[265] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[271] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[277] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[283] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[289] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[295] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[301] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[307] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[313] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[319] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[325] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[331] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[337] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[343] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[355] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[367] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[373] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[379] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[385] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[391] "subtype1" "subtype3" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [25] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [55] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [67] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [79] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [97] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[115] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[121] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[127] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[151] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[163] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[175] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[187] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[193] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[199] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[205] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[217] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[223] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[229] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[235] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[241] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[247] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[253] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[259] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[265] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[271] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[277] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[283] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[289] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[295] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[301] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[307] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[313] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[319] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[325] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[331] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[337] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[343] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[355] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[367] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[373] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[379] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[385] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[391] "subtype1" "subtype3" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [25] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [55] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [67] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [79] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [97] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[115] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[121] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[127] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[151] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[163] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[175] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[187] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[193] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[199] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[205] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[217] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[223] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[229] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[235] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[241] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[247] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[253] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[259] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[265] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[271] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[277] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[283] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[289] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[295] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[301] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[307] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[313] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[319] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[325] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[331] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[337] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[343] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[355] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[367] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[373] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[379] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[385] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[391] "subtype1" "subtype3" "subtype2" "subtype1"
D5V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1       3       18        27        68         4
  subtype2      14       20        16        60         2
  subtype3       7       23        22        59         2
D5V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 11 33 31 48
  subtype2 17 38 26 32
  subtype3 10 32 26 46
D5V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 42 19 43  4
  subtype2 39 14 51  2
  subtype3 50 18 31  1
D5V5, multiclass
D5V6, binary
          cls
clus        0  1
  subtype1 32 17
  subtype2 36  9
  subtype3 32 14
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   32   17
  subtype2   36    9
  subtype3   32   14
    clus
vv   subtype1 subtype2 subtype3
  M0       32       36       32
  MX       17        9       14
D5V7, binary
          cls
clus         0   1
  subtype1  33 124
  subtype2  32  88
  subtype3  47  75
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   33  124
  subtype2   32   88
  subtype3   47   75
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       33       32       47
  MALE        124       88       75
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                   151
  subtype2                                   119
  subtype3                                   122
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  subtype1                                                           0
  subtype2                                                           1
  subtype3                                                           0
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  subtype1                                                   6
  subtype2                                                   0
  subtype3                                                   0
D5V8, multiclass
D5V9, binary
          cls
clus         0   1
  subtype1  32 125
  subtype2  29  91
  subtype3  20 102
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   32  125
  subtype2   29   91
  subtype3   20  102
     clus
vv    subtype1 subtype2 subtype3
  NO        32       29       20
  YES      125       91      102
D5V10, continuous
D5V11, continuous
D5V12, continuous

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 67 55
  subtype2 81 53
  subtype3 95 43
subtype1 subtype2 subtype3 
     122      134      138 
subtype1 subtype2 subtype3 
      55       53       43 
$subtype1
TCGA-BA-4075 TCGA-BA-5149 TCGA-BA-6873 TCGA-BA-A6DB TCGA-BB-4224 TCGA-BB-8596 
        9.30         8.15         3.72         7.10         9.14        71.05 
TCGA-CN-4725 TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4740 
       15.95        20.15        21.11        12.99        17.79        26.66 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
       13.05        16.04         5.69        35.54         8.32        16.21 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6013 TCGA-CN-6016 
       11.84        11.57         8.52        22.45        14.24        10.39 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6989 
       20.68         1.48        12.85         6.64         7.36        20.09 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A642 TCGA-CQ-5325 TCGA-CQ-5327 
        3.68        14.20         1.51         2.70        21.50        54.58 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5333 TCGA-CQ-6219 TCGA-CQ-6222 TCGA-CQ-6224 
       46.75        29.46        11.21        15.75        46.26        32.38 
TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-A4C6 TCGA-CQ-A4C7 
        4.24        26.79        33.11        16.73        31.82        11.61 
TCGA-CQ-A4CH TCGA-CR-6474 TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7372 TCGA-CR-7376 
        9.96        18.54        12.46        39.16        24.95        31.96 
TCGA-CR-7377 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7391 TCGA-CR-7392 
        9.17        26.17        17.13        47.01        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7397 TCGA-CR-7401 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5440 
       29.85         7.10        35.41       108.33        47.28       107.51 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 
       80.12        17.06        13.35        23.05        48.59        60.49 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6940 TCGA-CV-6943 TCGA-CV-6950 
        9.60         2.14         9.70        26.43        19.79        15.09 
TCGA-CV-6951 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7095 TCGA-CV-7097 
       30.08         7.13         8.42         2.50        18.81        12.66 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7238 TCGA-CV-7243 
        1.84        52.31        12.92        71.21        47.47        31.36 
TCGA-CV-7247 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7414 TCGA-CV-7429 TCGA-CV-7435 
       18.97        18.41        57.47         0.46         3.52       142.52 
TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6825 TCGA-D6-8568 
        6.38        10.42        10.55        13.25        16.14         3.48 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 
        4.21         3.68        58.45        35.54        33.86        18.02 
TCGA-DQ-7592 TCGA-F7-8298 TCGA-F7-A61W TCGA-F7-A620 TCGA-HD-8224 TCGA-HD-8635 
        9.83        16.11         0.46         0.43         1.81         0.82 
TCGA-IQ-A61E TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61O TCGA-P3-A5QA TCGA-P3-A6SX 
       19.33        13.55        14.47        11.84        54.31        47.01 
TCGA-P3-A6T2 TCGA-P3-A6T8 
       63.02        13.15 

$subtype2
TCGA-BA-4076 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       13.64        23.74        42.35        23.84        20.48        53.79 
TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BB-7863 TCGA-BB-7872 
       14.83        12.62        11.54         5.69        13.91        14.33 
TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4726 TCGA-CN-4729 TCGA-CN-4734 
        0.16         0.13        26.27         4.67        12.89        24.92 
TCGA-CN-4738 TCGA-CN-5359 TCGA-CN-5365 TCGA-CN-5369 TCGA-CN-6011 TCGA-CN-6020 
       14.33        12.39        11.54        12.49        13.94         3.22 
TCGA-CN-6994 TCGA-CN-A49B TCGA-CQ-5324 TCGA-CQ-5326 TCGA-CQ-5331 TCGA-CQ-5334 
        3.91        14.70        39.68         2.93        45.99         4.24 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CQ-7069 
       28.60        32.38        34.75        48.03        43.04        29.62 
TCGA-CQ-7071 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CR-6471 
       28.83        17.92        18.02        12.92        12.85        39.52 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6484 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       16.90         6.02        11.64        11.51        15.75         9.27 
TCGA-CR-7367 TCGA-CR-7373 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7389 TCGA-CR-7390 
       47.34        29.23        34.06        19.92        12.89        29.82 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5442 TCGA-CV-5973 
       29.52        30.58        19.20        17.95        76.50        86.83 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6938 TCGA-CV-6939 
       43.23        54.74        62.43        90.12         4.73        21.90 
TCGA-CV-6942 TCGA-CV-6945 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-7089 
      126.08        12.03         6.08        53.95        10.98        64.83 
TCGA-CV-7090 TCGA-CV-7099 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7252 
      126.15         7.99        10.75       114.97         4.73         4.96 
TCGA-CV-7255 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 
        2.10       210.97        89.33         9.67        22.85        25.08 
TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      100.57        56.48       156.49        16.27        84.49        19.76 
TCGA-CV-7434 TCGA-CV-A45O TCGA-CV-A45Q TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7086 
        7.17        27.98       169.38         5.98        24.66         7.79 
TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-A4ZB 
       27.22        25.41         9.60         2.53         5.06         3.42 
TCGA-DQ-7588 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S 
       14.04        21.63         0.49         3.02        19.23         0.10 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.20        13.38         1.91         4.37         0.07         0.16 
TCGA-HD-7917 TCGA-HD-8634 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-IQ-7630 
        1.22         0.79         0.36         1.61         1.08        15.95 
TCGA-IQ-7632 TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D 
       14.50         6.90         0.46         1.12        12.89         1.84 
TCGA-MT-A67F TCGA-P3-A5Q6 TCGA-P3-A6T0 TCGA-P3-A6T3 TCGA-P3-A6T4 TCGA-P3-A6T5 
        3.65        15.78        19.00        18.97         2.04        29.00 
TCGA-P3-A6T7 TCGA-QK-A64Z 
       16.01        18.18 

$subtype3
TCGA-BA-4074 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5559 
       15.19        37.28         9.07        57.93        17.10        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 
        6.25        21.17         2.07         7.76        29.42        16.87 
TCGA-BA-A6DE TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 
        5.98         6.15        94.62         4.60        18.35        10.19 
TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8601 
       17.62        22.59        20.98        37.91        14.07        20.52 
TCGA-CN-4723 TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4735 TCGA-CN-4739 
       23.70        14.86        15.19        32.65        21.11        34.68 
TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5361 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 
       41.69        16.83         6.38         9.53        14.73        20.68 
TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6997 TCGA-CN-A63T 
        9.07        13.94        10.45        12.95        13.08         7.40 
TCGA-CN-A63U TCGA-CN-A63W TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5332 TCGA-CQ-6221 
       17.29        11.44        12.07        48.20        10.42        32.88 
TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-A4C9 TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 
       13.25        14.99        20.15        19.99        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6472 
       54.67        37.87        26.27        58.42        50.01        34.52 
TCGA-CR-6473 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-7364 TCGA-CR-7368 
       36.99        10.22        11.34         7.69        47.18        40.93 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7385 TCGA-CR-7388 
       35.84         3.45         3.09         0.99        32.78        27.06 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.13         5.95        29.95        48.39       139.43        17.16 
TCGA-CV-5432 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6936 
      129.21        94.88        91.53         7.07        21.07         5.46 
TCGA-CV-6937 TCGA-CV-6941 TCGA-CV-6948 TCGA-CV-6954 TCGA-CV-6960 TCGA-CV-6962 
       20.52        11.24        42.38        65.82        28.34         4.14 
TCGA-CV-7091 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7235 TCGA-CV-7242 
      111.16         9.01         5.26        21.80        56.68        36.00 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       26.20        17.13        95.34        11.87        47.97        36.13 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 
       35.54        17.85        25.94         0.07        34.09        14.89 
TCGA-CV-7428 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A461 TCGA-D6-6823 TCGA-D6-6827 
       54.94        16.64        22.19        67.86        23.05        18.67 
TCGA-DQ-5629 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 
       16.96        18.90        25.48        20.45        12.13        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-A61V TCGA-HD-7754 TCGA-HD-8314 
       10.65        11.18        18.54        12.62         0.82         1.45 
TCGA-HD-A634 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-A61G TCGA-IQ-A61I TCGA-KU-A66S 
        0.33        34.75         4.01        11.84         0.07         7.36 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6T6 
        8.35        29.92        23.70        10.85        36.82        12.99 

subtype1 subtype2 subtype3 
    0.43     0.07     0.07 
subtype1 subtype2 subtype3 
  142.52   210.97   139.43 
subtype1 subtype2 subtype3 
  16.075   14.765   18.100 
[1] "0.4 - 142.5 (16.1)" "0.1 - 211.0 (14.8)" "0.1 - 139.4 (18.1)"
  [1] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [25] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [67] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [91] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [97] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[115] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[121] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[127] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[157] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[163] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[175] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[181] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[187] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[193] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[205] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[217] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[223] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[229] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[235] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[241] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[247] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[253] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[259] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[265] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[271] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[277] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[283] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[289] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[295] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[307] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[313] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[319] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[325] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[331] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[337] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[343] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[349] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[355] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[361] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[367] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[373] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[379] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[385] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[391] "subtype3" "subtype2" "subtype1" "subtype2"
  [1] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [25] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [67] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [91] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [97] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[115] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[121] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[127] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[157] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[163] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[175] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[181] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[187] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[193] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[205] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[217] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[223] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[229] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[235] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[241] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[247] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[253] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[259] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[265] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[271] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[277] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[283] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[289] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[295] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[307] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[313] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[319] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[325] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[331] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[337] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[343] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[349] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[355] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[361] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[367] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[373] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[379] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[385] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[391] "subtype3" "subtype2" "subtype1" "subtype2"
  [1] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [25] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [67] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [91] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [97] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[115] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[121] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[127] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[157] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[163] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[175] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[181] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[187] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[193] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[205] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[217] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[223] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[229] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[235] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[241] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[247] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[253] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[259] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[265] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[271] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[277] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[283] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[289] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[295] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[307] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[313] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[319] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[325] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[331] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[337] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[343] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[349] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[355] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[361] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[367] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[373] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[379] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[385] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[391] "subtype3" "subtype2" "subtype1" "subtype2"
D6V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1      13       20        18        65         2
  subtype2       7       23        26        65         2
  subtype3       4       18        21        57         4
D6V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 17 38 30 34
  subtype2 11 33 27 53
  subtype3 10 32 26 39
D6V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 39 15 55  2
  subtype2 57 21 31  1
  subtype3 35 15 39  4
D6V5, multiclass
D6V6, binary
          cls
clus        0  1
  subtype1 38  9
  subtype2 37 17
  subtype3 25 14
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   38    9
  subtype2   37   17
  subtype3   25   14
    clus
vv   subtype1 subtype2 subtype3
  M0       38       37       25
  MX        9       17       14
D6V7, binary
          cls
clus         0   1
  subtype1  34  90
  subtype2  53  83
  subtype3  25 114
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   34   90
  subtype2   53   83
  subtype3   25  114
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       34       53       25
  MALE         90       83      114
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                   123
  subtype2                                   136
  subtype3                                   133
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  subtype1                                                           1
  subtype2                                                           0
  subtype3                                                           0
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  subtype1                                                   0
  subtype2                                                   0
  subtype3                                                   6
D6V8, multiclass
D6V9, binary
          cls
clus         0   1
  subtype1  32  92
  subtype2  18 118
  subtype3  31 108
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   32   92
  subtype2   18  118
  subtype3   31  108
     clus
vv    subtype1 subtype2 subtype3
  NO        32       18       31
  YES       92      118      108
D6V10, continuous
D6V11, continuous
D6V12, continuous

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2        0   1
  subtype1  83  28
  subtype2 100  64
  subtype3  66  62
subtype1 subtype2 subtype3 
     111      164      128 
subtype1 subtype2 subtype3 
      28       64       62 
$subtype1
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5556 
       15.19        13.64         8.15        23.74        42.35        23.84 
TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-A4IF TCGA-BA-A6DA 
       20.48        53.79         6.25        21.17        29.42        11.54 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-7863 TCGA-BB-7866 
        5.98         7.82         6.15         9.14        13.91        20.98 
TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 
        0.16         0.13         4.67        14.86        12.89        15.19 
TCGA-CN-5361 TCGA-CN-5365 TCGA-CN-5369 TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6995 
        6.38        11.54        12.49        22.45        13.94         3.68 
TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63W TCGA-CN-A641 
        1.51        14.70         7.40        17.29        11.44        12.07 
TCGA-CN-A642 TCGA-CQ-5331 TCGA-CQ-5334 TCGA-CQ-6221 TCGA-CQ-7063 TCGA-CQ-7064 
        2.70        45.99         4.24        32.88        48.03        45.30 
TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4CB TCGA-CQ-A4CE TCGA-CQ-A4CG TCGA-CQ-A4CH 
       28.83        31.82        17.92        12.92        12.85         9.96 
TCGA-CR-6478 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7373 TCGA-CR-7390 
        6.02        11.51        15.75         9.27        29.23        29.82 
TCGA-CR-7395 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5973 TCGA-CV-5977 
       30.58        17.95        94.88        76.50        86.83        60.49 
TCGA-CV-6436 TCGA-CV-6955 TCGA-CV-7089 TCGA-CV-7235 TCGA-CV-7410 TCGA-CV-7411 
       62.43        10.98        64.83        56.68       210.97        89.33 
TCGA-CV-7413 TCGA-CV-7427 TCGA-CV-7432 TCGA-CV-7440 TCGA-CV-A45O TCGA-CX-7086 
        9.67       156.49        84.49        22.19        27.98         7.79 
TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-A4Z9 TCGA-DQ-5631 TCGA-DQ-7588 
       27.22        25.41        23.05         3.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7593 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61S 
       18.90        12.13        21.63         0.49        19.23         0.10 
TCGA-F7-A61V TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
       12.62         0.43         0.20         1.91         4.37         0.07 
TCGA-HD-7753 TCGA-HD-8634 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 
        0.16         0.79         0.36         1.61         1.08        34.75 
TCGA-IQ-7630 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61I TCGA-IQ-A61K 
       15.95        14.50        19.33        11.84         0.07         5.29 
TCGA-IQ-A61L TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
       11.54         6.90         0.46        12.89         1.84         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5QA TCGA-P3-A6T3 
        8.35        54.31        18.97 

$subtype2
TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-6870 TCGA-BA-6871 
       37.28         9.07        57.93        17.10        14.83         2.07 
TCGA-BA-A6D8 TCGA-BA-A6DD TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
       16.87         5.69        94.62         4.60         4.37        18.35 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8601 
       10.19        17.62        22.59        37.91        14.07        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4731 TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-4739 
       26.27        23.70        32.65        21.11        14.33        34.68 
TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5374 TCGA-CN-6010 
       41.69        16.83        12.39        35.54         9.53        14.73 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6018 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6988 
       20.68        14.24         1.48         9.07        13.94        10.45 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 TCGA-CN-A63V TCGA-CN-A63Y TCGA-CQ-5323 
       12.95         3.91        13.08        15.91         5.75        48.20 
TCGA-CQ-5324 TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-6218 TCGA-CQ-6223 TCGA-CQ-6225 
       39.68         2.93        10.42        28.60        34.75        13.25 
TCGA-CQ-6228 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-A4C9 TCGA-CQ-A4CD TCGA-CQ-A4CI 
       14.99        43.04        29.62        20.15        18.02        19.99 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.67        37.87        26.27        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6480 TCGA-CR-6481 
       50.01        39.52        34.52        36.99        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 
       11.34        11.64         7.69        47.18        47.34        40.93 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7385 TCGA-CR-7388 
       35.84         3.45         3.09         0.99        32.78        27.06 
TCGA-CR-7389 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
       12.89         5.13         5.95        29.95        48.39       139.43 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5443 TCGA-CV-5978 TCGA-CV-6433 
       17.16       129.21        47.28        91.53         7.07        21.07 
TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6939 TCGA-CV-6941 
       90.12         9.70         5.46        20.52        21.90        11.24 
TCGA-CV-6948 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7090 
       42.38        53.95        65.82        28.34         4.14       126.15 
TCGA-CV-7091 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7236 
      111.16         7.99         9.01         5.26        21.80         4.73 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       36.00        26.20        17.13        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7414 TCGA-CV-7415 
       47.97        36.13        57.47        17.85         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7430 
       25.08        25.94         0.07        14.89        56.48        16.27 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7446 TCGA-CV-A461 TCGA-CV-A6JD 
        7.17       142.52        16.64        35.93        67.86         5.98 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-D6-6517 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-A4ZB 
       24.66        10.42         9.60         5.06        18.67         3.42 
TCGA-DQ-5629 TCGA-DQ-7591 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 
       16.96        20.45        10.65        11.18        18.54        16.11 
TCGA-F7-A50I TCGA-H7-7774 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-A634 TCGA-IQ-7631 
        3.02        13.38         0.82         1.22         0.33         4.01 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QE 
       11.84         7.36         3.68        29.92        15.78        23.70 
TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6T0 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 
       10.85        36.82        19.00         2.04        29.00        12.99 
TCGA-P3-A6T7 TCGA-QK-A64Z 
       16.01        18.18 

$subtype3
TCGA-BA-5559 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6DB TCGA-BB-7872 
       57.44        12.62         3.72         7.76         7.10        14.33 
TCGA-BB-8596 TCGA-CN-4725 TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 
       71.05        15.95        20.15        21.11        12.99        17.79 
TCGA-CN-4740 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5363 TCGA-CN-5364 
       26.66        13.05        16.04         5.69         8.32        16.21 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5370 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 
       11.84        11.57         8.52        10.39        20.68        12.85 
TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6996 TCGA-CQ-5325 
        3.22         6.64         7.36        20.09        14.20        21.50 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5333 TCGA-CQ-6219 TCGA-CQ-6220 
       54.58        46.75        29.46        11.21        15.75        32.38 
TCGA-CQ-6222 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 
       46.26        32.38         4.24        26.79        33.11        16.73 
TCGA-CQ-A4C7 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7372 
       11.61        18.54        16.90        12.46        39.16        24.95 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7386 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7397 
       47.01        30.02        31.10        29.85        29.52         7.10 
TCGA-CR-7401 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5966 
       35.41       108.33        19.20       107.51        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6441 
       13.35        23.05        48.59        43.23        54.74         9.60 
TCGA-CV-6934 TCGA-CV-6938 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        2.14         4.73        26.43       126.08        19.79        12.03 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 
       15.09        30.08         6.08         7.13         8.42         2.50 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7178 
       18.81        12.66         1.84        52.31        12.92        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7255 
       10.75       114.97        47.47        31.36        18.97         2.10 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7428 TCGA-CV-7429 
       18.41        35.54        34.09       100.57        54.94         3.52 
TCGA-CV-7433 TCGA-CV-7438 TCGA-CV-7568 TCGA-CV-A45Q TCGA-CX-7085 TCGA-D6-6515 
       19.76         6.38        30.48       169.38        10.55        13.25 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 
        2.53        16.14         3.48         4.21        58.45        35.54 
TCGA-DQ-5630 TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7594 TCGA-F7-A61W TCGA-HD-8224 
       33.86        25.48         9.83        12.10         0.46         1.81 
TCGA-HD-8314 TCGA-HD-8635 TCGA-IQ-A61H TCGA-IQ-A61J TCGA-MT-A51X TCGA-P3-A6SX 
        1.45         0.82        13.55        14.47         1.12        47.01 
TCGA-P3-A6T2 TCGA-P3-A6T8 
       63.02        13.15 

subtype1 subtype2 subtype3 
    0.07     0.07     0.46 
subtype1 subtype2 subtype3 
  210.97   142.52   169.38 
subtype1 subtype2 subtype3 
  13.640   17.145   17.095 
[1] "0.1 - 211.0 (13.6)" "0.1 - 142.5 (17.1)" "0.5 - 169.4 (17.1)"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [97] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[103] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[139] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[157] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[187] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[205] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[217] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[229] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[241] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[247] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[253] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[259] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[265] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[283] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[289] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[295] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[301] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[307] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[313] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[319] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[325] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[331] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[337] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[343] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[349] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[355] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[367] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[373] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[379] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[385] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[397] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[403] "subtype2"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [97] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[103] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[139] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[157] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[187] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[205] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[217] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[229] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[241] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[247] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[253] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[259] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[265] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[283] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[289] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[295] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[301] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[307] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[313] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[319] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[325] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[331] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[337] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[343] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[349] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[355] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[367] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[373] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[379] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[385] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[397] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[403] "subtype2"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [97] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[103] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[139] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[157] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[187] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[205] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[217] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[229] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[241] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[247] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[253] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[259] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[265] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[283] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[289] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[295] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[301] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[307] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[313] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[319] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[325] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[331] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[337] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[343] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[349] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[355] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[367] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[373] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[379] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[385] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[397] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[403] "subtype2"
D7V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1       8       19        22        47         2
  subtype2       5       20        24        83         4
  subtype3      11       23        19        64         2
D7V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 12 30 25 33
  subtype2 10 34 34 60
  subtype3 17 41 25 37
D7V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 43 17 29  2
  subtype2 53 16 50  4
  subtype3 37 19 50  1
D7V5, multiclass
D7V6, binary
          cls
clus        0  1
  subtype1 39 19
  subtype2 31 18
  subtype3 33  6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   39   19
  subtype2   31   18
  subtype3   33    6
    clus
vv   subtype1 subtype2 subtype3
  M0       39       31       33
  MX       19       18        6
D7V7, binary
          cls
clus         0   1
  subtype1  36  77
  subtype2  42 123
  subtype3  40  90
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   36   77
  subtype2   42  123
  subtype3   40   90
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       36       42       40
  MALE         77      123       90
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                   113
  subtype2                                   159
  subtype3                                   129
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  subtype1                                                           0
  subtype2                                                           1
  subtype3                                                           0
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  subtype1                                                   0
  subtype2                                                   5
  subtype3                                                   1
D7V8, multiclass
D7V9, binary
          cls
clus         0   1
  subtype1  15  98
  subtype2  33 132
  subtype3  32  98
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   98
  subtype2   33  132
  subtype3   32   98
     clus
vv    subtype1 subtype2 subtype3
  NO        15       33       32
  YES       98      132       98
D7V10, continuous
D7V11, continuous
D7V12, continuous

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2        0   1
  subtype1  89  73
  subtype2 160  81
subtype1 subtype2 
     162      241 
subtype1 subtype2 
      73       81 
$subtype1
TCGA-BA-5149 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.15        20.48        57.44        12.62         3.72         7.76 
TCGA-BA-A4IF TCGA-BA-A6DB TCGA-BA-A6DE TCGA-BB-7863 TCGA-BB-7872 TCGA-BB-8596 
       29.42         7.10         5.98        13.91        14.33        71.05 
TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4733 
        0.16         0.13        15.95         4.67        20.15        21.11 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 
       12.99        17.79        26.66        13.05        16.04         5.69 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5370 
       35.54         8.32        16.21        11.84        11.57         8.52 
TCGA-CN-5373 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6020 
       22.45        14.24        10.39        20.68        12.85         3.22 
TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 
        6.64         7.36        20.09         3.68        14.20         1.51 
TCGA-CN-A642 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5333 
        2.70        21.50        54.58        46.75        29.46        11.21 
TCGA-CQ-5334 TCGA-CQ-6219 TCGA-CQ-6220 TCGA-CQ-6222 TCGA-CQ-6224 TCGA-CQ-6227 
        4.24        15.75        32.38        46.26        32.38         4.24 
TCGA-CQ-6229 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-A4C6 TCGA-CQ-A4C7 
       26.79        45.30        33.11        16.73        31.82        11.61 
TCGA-CQ-A4CE TCGA-CQ-A4CH TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6488 TCGA-CR-7365 
       12.92         9.96        18.54        16.90        12.46        39.16 
TCGA-CR-7372 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 
       24.95        31.96         9.17        34.06        26.17        17.13 
TCGA-CR-7386 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7397 TCGA-CR-7401 
       47.01        30.02        31.10        29.85         7.10        35.41 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5444 
      129.21       108.33        47.28        19.20       107.51        80.12 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 
       17.06        13.35        23.05        48.59        60.49        43.23 
TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6940 TCGA-CV-6943 
       54.74         9.60        90.12         2.14        26.43        19.79 
TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6956 TCGA-CV-6959 
       12.03        15.09        30.08         6.08         7.13         8.42 
TCGA-CV-6961 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        2.50        18.81        12.66         1.84        52.31        12.92 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7253 
       71.21        10.75        47.47        31.36        18.97        11.87 
TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7414 TCGA-CV-7422 
        2.10        18.41        57.47        35.54         0.46        34.09 
TCGA-CV-7423 TCGA-CV-7429 TCGA-CV-7433 TCGA-CV-7438 TCGA-CV-7568 TCGA-CV-A45Q 
      100.57         3.52        19.76         6.38        30.48       169.38 
TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6825 TCGA-D6-8568 TCGA-D6-8569 
       10.42        10.55        13.25        16.14         3.48         4.21 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7592 
        3.68        58.45        35.54        33.86        18.02         9.83 
TCGA-DQ-7594 TCGA-F7-8298 TCGA-F7-A50G TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 
       12.10        16.11         0.49        12.62         0.46         0.43 
TCGA-HD-7753 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-IQ-7630 
        0.16         1.81         1.45         0.79         0.82        15.95 
TCGA-IQ-A61E TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-MT-A51X 
       19.33        13.55        14.47         5.29        11.54         1.12 
TCGA-MT-A67A TCGA-P3-A5QA TCGA-P3-A6SX TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T8 
       12.89        54.31        47.01        63.02        18.97        13.15 

$subtype2
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 
       15.19        13.64        37.28         9.07        23.74        42.35 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 
       57.93        17.10        23.84        53.79         6.25        21.17 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BA-A6DF 
       14.83         2.07        16.87        11.54         5.69         7.82 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.15        94.62         9.14         4.60         4.37        18.35 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       10.19        17.62        22.59        20.98        37.91        14.07 
TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 
       20.52        26.27        23.70        14.86        12.89        15.19 
TCGA-CN-4731 TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-5356 
       32.65        21.11        14.33        34.68        41.69        16.83 
TCGA-CN-5359 TCGA-CN-5361 TCGA-CN-5365 TCGA-CN-5369 TCGA-CN-5374 TCGA-CN-6010 
       12.39         6.38        11.54        12.49         9.53        14.73 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6018 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6988 
       13.94        20.68         1.48         9.07        13.94        10.45 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U 
       12.95         3.91        13.08        14.70         7.40        17.29 
TCGA-CN-A63V TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 
       15.91        11.44         5.75        12.07        48.20        39.68 
TCGA-CQ-5326 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 
        2.93        45.99        10.42        28.60        32.88        34.75 
TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CQ-7071 
       13.25        14.99        48.03        43.04        29.62        28.83 
TCGA-CQ-A4C9 TCGA-CQ-A4CB TCGA-CQ-A4CD TCGA-CQ-A4CG TCGA-CQ-A4CI TCGA-CR-5243 
       20.15        17.92        18.02        12.85        19.99        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.67        37.87        26.27        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       39.52        34.52        36.99         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.34        11.64         7.69        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       47.18        47.34        40.93        35.84         3.45         3.09 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7380 TCGA-CR-7385 TCGA-CR-7388 TCGA-CR-7389 
       29.23         0.99        19.92        32.78        27.06        12.89 
TCGA-CR-7390 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 
       29.82        29.52        30.58         5.13         5.95        29.95 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 
       48.39       139.43        17.16        17.95        94.88        76.50 
TCGA-CV-5443 TCGA-CV-5973 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6935 
       91.53        86.83         7.07        21.07        62.43         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 
        5.46        20.52         4.73        21.90        11.24       126.08 
TCGA-CV-6948 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6960 TCGA-CV-6962 
       42.38        53.95        65.82        10.98        28.34         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
       64.83       126.15       111.16         7.99         9.01         5.26 
TCGA-CV-7177 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7242 TCGA-CV-7245 
       21.80       114.97        56.68         4.73        36.00        26.20 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7409 
       17.13        95.34         4.96        47.97        36.13        17.85 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
      210.97        89.33         9.67        22.85        25.08        25.94 
TCGA-CV-7421 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 
        0.07        14.89        56.48       156.49        54.94        16.27 
TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-7446 
       84.49         7.17       142.52        16.64        22.19        35.93 
TCGA-CV-A45O TCGA-CV-A461 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7086 TCGA-CX-7219 
       27.98        67.86         5.98        24.66         7.79        27.22 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 
       25.41         9.60        23.05         2.53         5.06        18.67 
TCGA-D6-A4ZB TCGA-DQ-5629 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
        3.42        16.96        14.04        18.90        25.48        20.45 
TCGA-DQ-7593 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8489 TCGA-F7-A50I 
       12.13        10.65        11.18        18.54        21.63         3.02 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
       19.23         0.10         0.20        13.38         1.91         4.37 
TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 
        0.07         0.82         1.22         0.36         1.61         0.33 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61G TCGA-IQ-A61I 
        1.08        34.75         4.01        14.50        11.84         0.07 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T TCGA-MT-A51W TCGA-MT-A67D TCGA-MT-A67F 
       11.84         7.36         6.90         0.46         1.84         3.65 
TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QE TCGA-P3-A5QF 
        3.68         8.35        29.92        15.78        23.70        10.85 
TCGA-P3-A6SW TCGA-P3-A6T0 TCGA-P3-A6T4 TCGA-P3-A6T5 TCGA-P3-A6T6 TCGA-P3-A6T7 
       36.82        19.00         2.04        29.00        12.99        16.01 
TCGA-QK-A64Z 
       18.18 

subtype1 subtype2 
    0.13     0.07 
subtype1 subtype2 
  169.38   210.97 
subtype1 subtype2 
   15.95    16.96 
[1] "0.1 - 169.4 (15.9)" "0.1 - 211.0 (17.0)"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [67] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [85] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [91] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [97] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[109] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[115] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[127] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[139] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[193] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[205] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[217] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[223] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[235] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[241] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[247] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[253] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[259] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[265] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[271] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[277] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[283] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[289] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[295] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[301] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[313] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[319] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[325] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[331] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[337] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[343] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[349] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[355] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[361] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[373] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[379] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[385] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[397] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[403] "subtype2"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [67] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [85] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [91] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [97] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[109] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[115] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[127] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[139] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[193] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[205] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[217] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[223] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[235] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[241] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[247] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[253] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[259] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[265] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[271] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[277] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[283] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[289] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[295] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[301] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[313] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[319] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[325] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[331] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[337] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[343] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[349] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[355] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[361] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[373] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[379] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[385] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[397] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[403] "subtype2"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [67] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [85] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [91] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [97] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[109] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[115] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[127] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[139] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[193] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[205] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[217] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[223] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[235] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[241] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[247] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[253] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[259] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[265] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[271] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[277] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[283] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[289] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[295] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[301] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[313] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[319] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[325] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[331] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[337] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[343] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[349] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[355] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[361] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[373] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[379] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[385] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[397] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[403] "subtype2"
[1] "hr=" "1.5"
D8V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1      17       28        31        75         2
  subtype2       7       34        34       119         6
D8V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 24 49 41 40
  subtype2 15 56 43 90
D8V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 53 25 61  2
  subtype2 80 27 68  5
D8V5, multiclass
D8V6, binary
          cls
clus        0  1
  subtype1 50 12
  subtype2 53 31
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   50   12
  subtype2   53   31
    clus
vv   subtype1 subtype2
  M0       50       53
  MX       12       31
D8V7, binary
          cls
clus         0   1
  subtype1  52 113
  subtype2  66 177
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   52  113
  subtype2   66  177
        clus
vv       subtype1 subtype2
  FEMALE       52       66
  MALE        113      177
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                   164
  subtype2                                   237
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  subtype1                                                           0
  subtype2                                                           1
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  subtype1                                                   1
  subtype2                                                   5
D8V8, multiclass
D8V9, binary
          cls
clus         0   1
  subtype1  38 127
  subtype2  42 201
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   38  127
  subtype2   42  201
     clus
vv    subtype1 subtype2
  NO        38       42
  YES      127      201
D8V10, continuous
D8V11, continuous
D8V12, continuous

Clustering(9) Variable = MIRSEQ_MATURE_CNMF
D9V1, survival
          sevent
clus2       0  1
  subtype1 83 29
  subtype2 87 49
  subtype3 57 61
subtype1 subtype2 subtype3 
     112      136      118 
subtype1 subtype2 subtype3 
      29       49       61 
$subtype1
TCGA-BA-5149 TCGA-BA-5152 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-6869 TCGA-BA-A4IF 
        8.15        42.35        23.84        20.48        21.17        29.42 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-7863 
       16.87        11.54         5.69         5.98         7.82        13.91 
TCGA-BB-7864 TCGA-BB-7872 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-6998 TCGA-CN-A49B 
       22.59        14.33         0.16         0.13         1.51        14.70 
TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63W TCGA-CN-A63Y TCGA-CN-A641 TCGA-CN-A642 
        7.40        17.29        11.44         5.75        12.07         2.70 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5331 TCGA-CQ-6221 TCGA-CQ-7064 TCGA-CQ-7065 
       39.68        21.50        45.99        32.88        45.30        33.11 
TCGA-CQ-7071 TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4C9 TCGA-CQ-A4CD TCGA-CQ-A4CE 
       28.83        31.82        11.61        20.15        18.02        12.92 
TCGA-CQ-A4CG TCGA-CQ-A4CH TCGA-CQ-A4CI TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6492 
       12.85         9.96        19.99        16.90         6.02        15.75 
TCGA-CR-6493 TCGA-CV-5432 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5973 TCGA-CV-5976 
        9.27       129.21        94.88        76.50        86.83        48.59 
TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-7409 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 
       60.49        54.74        17.85        89.33         9.67        22.85 
TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-A45O TCGA-CV-A45Q 
       25.08       100.57        56.48       156.49        27.98       169.38 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-D6-6515 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
        5.98        24.66        13.25         4.21         3.68         3.42 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-A50G TCGA-F7-A50I 
       18.02        14.04        20.45         9.83         0.49         3.02 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 
       19.23         0.10        12.62         0.46         0.43         0.20 
TCGA-H7-8501 TCGA-HD-7753 TCGA-HD-8634 TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A634 
        1.91         0.16         0.79         0.36         1.61         0.33 
TCGA-HD-A6I0 TCGA-IQ-7630 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61I 
        1.08        15.95        14.50        19.33        11.84         0.07 
TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-KU-A66T 
       14.47         5.29        11.54        11.84         7.36         6.90 
TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G 
        0.46         1.12        12.89         1.84         3.65         3.68 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QF TCGA-P3-A6T2 TCGA-P3-A6T3 
        8.35        29.92        54.31        10.85        63.02        18.97 
TCGA-P3-A6T4 TCGA-P3-A6T6 TCGA-P3-A6T7 TCGA-QK-A64Z 
        2.04        12.99        16.01        18.18 

$subtype2
TCGA-BA-5555 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 
       17.10        53.79        57.44         6.25        14.83         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4227 TCGA-BB-7861 TCGA-BB-7862 
       12.62         3.72         6.15         4.37        10.19        17.62 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-8601 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-6010 
       20.98        37.91        20.52        14.33        34.68        14.73 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6988 
       13.94        20.68        14.24         9.07        13.94        10.45 
TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6997 TCGA-CQ-5323 TCGA-CQ-5332 TCGA-CQ-6218 
       12.95         3.68        13.08        48.20        10.42        28.60 
TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CR-5243 
       34.75        13.25        14.99        48.03        43.04        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.67        37.87        26.27        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       34.52        36.99        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        7.69        11.51        47.18        47.34        40.93        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7385 TCGA-CR-7388 
        3.45         3.09        29.23         0.99        32.78        27.06 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        29.82        30.02        29.85        29.52        30.58 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.13         5.95        29.95        48.39       139.43        17.16 
TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5443 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 
       47.28        17.95        91.53        21.07        62.43        90.12 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6948 TCGA-CV-6952 
        9.70         5.46        21.90        11.24        42.38         6.08 
TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 
       53.95        10.98        28.34         4.14        64.83       111.16 
TCGA-CV-7099 TCGA-CV-7101 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 
        7.99         5.26        36.00        26.20        17.13        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7418 
        4.96        11.87        47.97         2.10        36.13        25.94 
TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7435 TCGA-CV-7437 
       14.89        54.94        16.27        84.49       142.52        16.64 
TCGA-CV-7440 TCGA-CV-7446 TCGA-CV-A461 TCGA-CX-7082 TCGA-CX-7086 TCGA-CX-7219 
       22.19        35.93        67.86        10.42         7.79        27.22 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
       25.41         9.60        23.05        16.14         5.06        18.67 
TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-7590 TCGA-DQ-7593 TCGA-DQ-7595 TCGA-DQ-7596 
       58.45        16.96        25.48        12.13        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8489 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 
       18.54        21.63        13.38         0.07         0.82         1.22 
TCGA-HL-7533 TCGA-P3-A5QE TCGA-P3-A6SW TCGA-P3-A6T5 
       34.75        23.70        36.82        29.00 

$subtype3
TCGA-BA-7269 TCGA-BA-A6DB TCGA-BB-7871 TCGA-BB-8596 TCGA-CN-4733 TCGA-CN-4742 
        7.76         7.10        14.07        71.05        21.11        13.05 
TCGA-CN-5358 TCGA-CN-5370 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        5.69         8.52        10.39        20.68         1.48        12.85 
TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6996 
        3.22         6.64         7.36        20.09         3.91        14.20 
TCGA-CN-A63V TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5333 
       15.91         2.93        54.58        46.75        29.46        11.21 
TCGA-CQ-5334 TCGA-CQ-6219 TCGA-CQ-6220 TCGA-CQ-6222 TCGA-CQ-6224 TCGA-CQ-6227 
        4.24        15.75        32.38        46.26        32.38         4.24 
TCGA-CQ-6229 TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CQ-A4CB TCGA-CR-5247 TCGA-CR-6474 
       26.79        16.73        29.62        17.92        11.77        18.54 
TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7372 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       12.46        39.16        24.95        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7392 TCGA-CR-7397 
       19.92        26.17        17.13        47.01        31.10         7.10 
TCGA-CR-7401 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5966 
       35.41       108.33        19.20       107.51        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6441 TCGA-CV-6934 
       13.35        23.05         7.07        43.23         9.60         2.14 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       20.52         4.73        26.43       126.08        19.79        12.03 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 
       15.09        30.08        65.82         7.13         8.42         2.50 
TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 
      126.15        18.81        12.66         9.01         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.92        21.80        71.21        10.75       114.97        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7263 TCGA-CV-7406 
        4.73        47.47        31.36        18.97        18.41        57.47 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7414 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7429 
       35.54       210.97         0.46         0.07        34.09         3.52 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7438 TCGA-CV-7568 TCGA-CX-7085 TCGA-D6-6824 
       19.76         7.17         6.38        30.48        10.55         2.53 
TCGA-D6-8568 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-7589 TCGA-DQ-7594 TCGA-F7-8298 
        3.48        35.54        33.86        18.90        12.10        16.11 
TCGA-H7-8502 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8635 TCGA-IQ-7631 TCGA-IQ-A61H 
        4.37         1.81         1.45         0.82         4.01        13.55 
TCGA-P3-A5Q6 TCGA-P3-A6SX TCGA-P3-A6T0 TCGA-P3-A6T8 
       15.78        47.01        19.00        13.15 

subtype1 subtype2 subtype3 
    0.07     0.07     0.07 
subtype1 subtype2 subtype3 
  169.38   142.52   210.97 
subtype1 subtype2 subtype3 
  13.120   20.600   16.895 
[1] "0.1 - 169.4 (13.1)" "0.1 - 142.5 (20.6)" "0.1 - 211.0 (16.9)"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [31] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [37] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [49] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [61] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [85] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [97] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[103] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[169] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[181] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[187] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[193] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[205] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[211] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[235] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[241] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[247] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[253] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[259] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[271] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[289] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[295] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[301] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[307] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[313] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[319] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[325] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[331] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[337] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[343] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[349] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[355] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[361] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [31] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [37] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [49] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [61] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [85] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [97] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[103] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[169] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[181] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[187] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[193] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[205] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[211] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[235] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[241] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[247] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[253] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[259] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[271] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[289] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[295] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[301] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[307] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[313] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[319] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[325] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[331] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[337] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[343] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[349] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[355] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[361] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [31] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [37] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [49] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [61] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [85] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [97] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[103] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[169] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[181] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[187] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[193] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[205] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[211] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[235] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[241] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[247] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[253] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[259] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[271] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[289] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[295] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[301] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[307] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[313] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[319] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[325] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[331] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[337] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[343] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[349] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[355] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[361] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
D9V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1       7       18        27        47         2
  subtype2       8       18        16        62         2
  subtype3       8       24        19        61         2
D9V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 13 32 29 29
  subtype2 12 23 27 45
  subtype3 12 40 23 39
D9V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 40 17 33  2
  subtype2 46 13 37  2
  subtype3 34 20 45  1
D9V5, multiclass
D9V6, binary
          cls
clus        0  1
  subtype1 43 30
  subtype2 25  4
  subtype3 22  9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   43   30
  subtype2   25    4
  subtype3   22    9
    clus
vv   subtype1 subtype2 subtype3
  M0       43       25       22
  MX       30        4        9
D9V7, binary
          cls
clus         0   1
  subtype1  41  74
  subtype2  31 106
  subtype3  37  82
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   41   74
  subtype2   31  106
  subtype3   37   82
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       41       31       37
  MALE         74      106       82
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                   111
  subtype2                                   135
  subtype3                                   118
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  subtype1                                                           1
  subtype2                                                           0
  subtype3                                                           0
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  subtype1                                                   3
  subtype2                                                   2
  subtype3                                                   1
D9V8, multiclass
D9V9, binary
          cls
clus         0   1
  subtype1   9 106
  subtype2  30 107
  subtype3  23  96
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9  106
  subtype2   30  107
  subtype3   23   96
     clus
vv    subtype1 subtype2 subtype3
  NO         9       30       23
  YES      106      107       96
D9V10, continuous
D9V11, continuous
D9V12, continuous

Clustering(10) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D10V1, survival
          sevent
clus2        0   1
  subtype1  80  57
  subtype2 121  58
  subtype3  26  24
subtype1 subtype2 subtype3 
     137      179       50 
subtype1 subtype2 subtype3 
      57       58       24 
$subtype1
TCGA-BA-5559 TCGA-BA-6873 TCGA-BA-A4IF TCGA-BA-A6DB TCGA-BB-7872 TCGA-BB-8596 
       57.44         3.72        29.42         7.10        14.33        71.05 
TCGA-C9-A480 TCGA-CN-4733 TCGA-CN-4742 TCGA-CN-5358 TCGA-CN-5370 TCGA-CN-6013 
        0.13        21.11        13.05         5.69         8.52        14.24 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6989 
       10.39        20.68        12.85         6.64         7.36        20.09 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A63V TCGA-CN-A642 TCGA-CQ-5325 
        3.68        14.20         1.51        15.91         2.70        21.50 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5333 TCGA-CQ-6219 TCGA-CQ-6222 
       54.58        46.75        29.46        11.21        15.75        46.26 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       32.38         4.24        26.79        45.30        33.11        16.73 
TCGA-CQ-A4C6 TCGA-CQ-A4C7 TCGA-CQ-A4CE TCGA-CQ-A4CH TCGA-CR-6474 TCGA-CR-6477 
       31.82        11.61        12.92         9.96        18.54        16.90 
TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7372 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       12.46        39.16        24.95        31.96         9.17        34.06 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7394 
       26.17        17.13        47.01        30.02        31.10        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       30.58         7.10        35.41       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       19.20       107.51        80.12        17.06        13.35        23.05 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6934 
       48.59        60.49        43.23        54.74         9.60         2.14 
TCGA-CV-6940 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6956 
       26.43        19.79        15.09        30.08         6.08         7.13 
TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7102 TCGA-CV-7103 
        8.42         2.50        18.81        12.66         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 
       12.92        71.21        10.75        47.47        31.36        18.97 
TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7414 TCGA-CV-7421 
        2.10        18.41        57.47        35.54         0.46         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7433 TCGA-CV-7438 TCGA-CV-7568 TCGA-CV-A45Q 
       34.09       100.57        19.76         6.38        30.48       169.38 
TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6825 TCGA-D6-8568 TCGA-D6-8569 
       10.42        10.55        13.25        16.14         3.48         4.21 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7592 
        3.68        58.45        35.54        33.86        18.02         9.83 
TCGA-DQ-7594 TCGA-F7-8298 TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61V TCGA-F7-A620 
       12.10        16.11         0.49        19.23        12.62         0.43 
TCGA-HD-7753 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-IQ-7630 
        0.16         1.81         1.45         0.79         0.82        15.95 
TCGA-IQ-A61E TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O 
       19.33        13.55        14.47         5.29        11.54        11.84 
TCGA-MT-A51X TCGA-MT-A67A TCGA-P3-A5QA TCGA-P3-A6SX TCGA-P3-A6T8 
        1.12        12.89        54.31        47.01        13.15 

$subtype2
TCGA-BA-5149 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        8.15        42.35        17.10        23.84        20.48        53.79 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 
        6.25        21.17        14.83         2.07        12.62         7.76 
TCGA-BA-A6DA TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4227 TCGA-BB-7861 
       11.54         5.98         7.82         6.15         4.37        10.19 
TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8601 
       17.62        22.59        20.98        37.91        14.07        20.52 
TCGA-C9-A47Z TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        0.16        14.33        34.68        14.73        13.94        20.68 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 
        3.22         9.07        13.94        10.45        12.95         3.91 
TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A63T TCGA-CN-A63U TCGA-CN-A63W TCGA-CN-A63Y 
       13.08        14.70         7.40        17.29        11.44         5.75 
TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-6218 TCGA-CQ-6221 
       12.07        48.20        45.99        10.42        28.60        32.88 
TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CQ-A4C9 
       34.75        13.25        14.99        48.03        43.04        20.15 
TCGA-CQ-A4CI TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       19.99        84.23        11.77        54.67        37.87        26.27 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 
       58.42        50.01        39.52        34.52        36.99         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 
       11.90        10.22        11.34        11.64         7.69        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
       15.75         9.27        47.18        47.34        40.93        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7385 TCGA-CR-7388 
        3.45         3.09        29.23         0.99        32.78        27.06 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7393 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 
       12.89        29.82        29.85         5.13         5.95        29.95 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5439 TCGA-CV-5442 TCGA-CV-5443 
       48.39       139.43        17.16        17.95        76.50        91.53 
TCGA-CV-5973 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6935 
       86.83         7.07        21.07        62.43        90.12         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6948 
        5.46        20.52        21.90        11.24       126.08        42.38 
TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 
       53.95        10.98        28.34         4.14        64.83       111.16 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7183 TCGA-CV-7236 
        7.99         9.01         5.26        21.80       114.97         4.73 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 
       36.00        26.20        17.13        95.34        11.87        47.97 
TCGA-CV-7261 TCGA-CV-7418 TCGA-CV-7424 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 
       36.13        25.94        14.89       156.49        54.94        16.27 
TCGA-CV-7432 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-7446 TCGA-CV-A461 
       84.49       142.52        16.64        22.19        35.93        67.86 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
        7.79        27.22        25.41         9.60        23.05         2.53 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-A4ZB TCGA-DQ-5629 TCGA-DQ-7589 TCGA-DQ-7590 
        5.06        18.67         3.42        16.96        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8489 
       20.45        12.13        10.65        11.18        18.54        21.63 
TCGA-F7-A50I TCGA-F7-A61S TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 
        3.02         0.10         0.20        13.38         1.91         0.07 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-A634 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
        0.82         1.22         0.33        34.75         4.01        14.50 
TCGA-IQ-A61I TCGA-MT-A51W TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 
        0.07         0.46         3.65         3.68         8.35        29.92 
TCGA-P3-A5QE TCGA-P3-A5QF TCGA-P3-A6SW TCGA-P3-A6T4 TCGA-P3-A6T6 
       23.70        10.85        36.82         2.04        12.99 

$subtype3
TCGA-BA-A6D8 TCGA-BA-A6DD TCGA-BB-7863 TCGA-CN-6018 TCGA-CQ-5324 TCGA-CQ-5326 
       16.87         5.69        13.91         1.48        39.68         2.93 
TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-7069 TCGA-CQ-7071 TCGA-CQ-A4CB TCGA-CQ-A4CD 
        4.24        32.38        29.62        28.83        17.92        18.02 
TCGA-CQ-A4CG TCGA-CR-7380 TCGA-CV-5441 TCGA-CV-6938 TCGA-CV-6945 TCGA-CV-6954 
       12.85        19.92        94.88         4.73        12.03        65.82 
TCGA-CV-7090 TCGA-CV-7235 TCGA-CV-7252 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
      126.15        56.68         4.96        17.85       210.97        89.33 
TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7425 TCGA-CV-7429 TCGA-CV-7434 
        9.67        22.85        25.08        56.48         3.52         7.17 
TCGA-CV-A45O TCGA-CV-A6JD TCGA-CV-A6JE TCGA-DQ-7588 TCGA-F7-A61W TCGA-H7-8502 
       27.98         5.98        24.66        14.04         0.46         4.37 
TCGA-HD-A4C1 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-IQ-A61G TCGA-KU-A66S TCGA-KU-A66T 
        0.36         1.61         1.08        11.84         7.36         6.90 
TCGA-MT-A67D TCGA-P3-A5Q6 TCGA-P3-A6T0 TCGA-P3-A6T2 TCGA-P3-A6T3 TCGA-P3-A6T5 
        1.84        15.78        19.00        63.02        18.97        29.00 
TCGA-P3-A6T7 TCGA-QK-A64Z 
       16.01        18.18 

subtype1 subtype2 subtype3 
    0.07     0.07     0.36 
subtype1 subtype2 subtype3 
  169.38   156.49   210.97 
subtype1 subtype2 subtype3 
   16.14    16.96    16.44 
[1] "0.1 - 169.4 (16.1)" "0.1 - 156.5 (17.0)" "0.4 - 211.0 (16.4)"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [49] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [55] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [73] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [85] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [97] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[145] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[151] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[169] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[175] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[187] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[199] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[205] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[211] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[217] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[223] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[229] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[235] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[241] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[247] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[253] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[259] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[265] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[271] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[289] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[295] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[301] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[313] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[319] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[325] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[331] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[337] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[343] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[349] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[355] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[361] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [49] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [55] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [73] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [85] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [97] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[145] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[151] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[169] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[175] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[187] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[199] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[205] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[211] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[217] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[223] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[229] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[235] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[241] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[247] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[253] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[259] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[265] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[271] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[289] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[295] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[301] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[313] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[319] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[325] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[331] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[337] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[343] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[349] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[355] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[361] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [49] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [55] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [73] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [85] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [97] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[145] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[151] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[169] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[175] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[187] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[199] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[205] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[211] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[217] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[223] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[229] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[235] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[241] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[247] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[253] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[259] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[265] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[271] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[289] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[295] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[301] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[313] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[319] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[325] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[331] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[337] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[343] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[349] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[355] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[361] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
D10V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1      16       27        24        62         1
  subtype2       7       26        29        79         3
  subtype3       0        7         9        29         2
D10V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 20 44 33 33
  subtype2 15 41 37 54
  subtype3  2 10  9 26
D10V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 49 19 49  1
  subtype2 55 25 49  3
  subtype3 16  6 17  1
D10V5, multiclass
D10V6, binary
          cls
clus        0  1
  subtype1 43 12
  subtype2 37 17
  subtype3 10 14
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   43   12
  subtype2   37   17
  subtype3   10   14
    clus
vv   subtype1 subtype2 subtype3
  M0       43       37       10
  MX       12       17       14
D10V7, binary
          cls
clus         0   1
  subtype1  46  94
  subtype2  46 134
  subtype3  17  34
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   46   94
  subtype2   46  134
  subtype3   17   34
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       46       46       17
  MALE         94      134       34
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                   138
  subtype2                                   176
  subtype3                                    50
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  subtype1                                                           1
  subtype2                                                           0
  subtype3                                                           0
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  subtype1                                                   1
  subtype2                                                   4
  subtype3                                                   1
D10V8, multiclass
D10V9, binary
          cls
clus         0   1
  subtype1  25 115
  subtype2  34 146
  subtype3   3  48
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   25  115
  subtype2   34  146
  subtype3    3   48
     clus
vv    subtype1 subtype2 subtype3
  NO        25       34        3
  YES      115      146       48
D10V10, continuous
D10V11, continuous
D10V12, continuous
> q(save="no")
