
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/HNSC-TP/8312467/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/HNSC-TP/8312257/HNSC-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=HNSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=HNSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/HNSC-TP/8312257/HNSC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/HNSC-TP/8312467/transformed.cor.cli.txt"

nPatients in clinical file=517, in cluster file=511, common to both=511
[1]  80 511
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               68               443 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               68               443 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              117               394 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              117               394 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               90               421 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               90               421 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               69               442 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               69               442 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               79               432 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               79               432 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              249               262 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              249               262 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               39               472 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               39               472 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               35               476 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               35               476 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              195               316 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              195               316 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               65               446 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               65               446 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               80               431 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               80               431 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               61               450 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               61               450 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              180               331 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              180               331 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              123               388 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              123               388 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              148               363 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              148               363 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              304               207 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              304               207 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
              102               409 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
              102               409 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
              136               375 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
              136               375 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                40                471 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                40                471 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                34                477 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                34                477 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                65                446 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                65                446 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                70                441 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                70                441 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               143                368 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               143                368 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                87                424 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                87                424 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                56                455 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                56                455 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
               148                363 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
               148                363 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                71                440 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                71                440 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
               104                407 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
               104                407 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
               104                407 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
               104                407 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                66                445 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                66                445 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                84                427 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                84                427 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
               119                392 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
               119                392 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                48                463 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                48                463 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                53                458 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                53                458 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                74                437 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                74                437 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               188                323 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               188                323 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               198                313 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               198                313 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                35                476 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                35                476 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
               110                401 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
               110                401 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               87               424 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               87               424 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               52               459 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               52               459 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               35               476 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               35               476 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               33               478 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               33               478 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               42               469 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               42               469 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              287               224 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              287               224 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               60               451 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               60               451 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              186               325 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              186               325 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              144               367 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              144               367 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               50               461 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               50               461 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              160               351 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              160               351 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               67               444 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               67               444 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               67               444 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               67               444 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               28               483 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               28               483 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               42               469 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               42               469 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              184               327 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              184               327 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               30               481 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               30               481 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              176               335 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              176               335 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               83               428 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               83               428 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               151                360 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               151                360 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               109                402 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               109                402 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               134                377 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               134                377 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               164                347 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               164                347 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                36                475 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                36                475 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                32                479 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                32                479 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               162                349 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               162                349 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                54                457 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                54                457 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                98                413 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                98                413 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                60                451 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                60                451 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                78                433 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                78                433 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               103                408 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               103                408 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                34                477 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                34                477 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               101                410 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               101                410 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               208                303 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               208                303 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                93                418 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                93                418 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                82                429 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                82                429 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                46                465 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                46                465 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                28                483 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                28                483 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               179                332 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               179                332 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                72                439 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                72                439 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               82               429 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               82               429 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 511 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 511 columns, 0 survival variables, and 10 non-survival variables.
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=7, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=2, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED       37     17     11      3
  1P GAIN WILD-TYPE    141     85    178     39
D1V1, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              37               141
  CLUS_2              17                85
  CLUS_3              11               178
  CLUS_4               3                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P GAIN MUTATED       13     21     15      8      4      5      2
  1P GAIN WILD-TYPE     60     74     77     71     67     74     20
D1V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        7      6      5     10
  1P GAIN WILD-TYPE     46     45     32     55
D1V3, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               7                46
  CLUS_2               6                45
  CLUS_3               5                32
  CLUS_4              10                55
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        1     10     17
  1P GAIN WILD-TYPE     15     62    101
D1V4, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               1                15
  CLUS_2              10                62
  CLUS_3              17               101
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       29     16     21
  1P GAIN WILD-TYPE    178    118    131
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              29               178
  CLUS_2              16               118
  CLUS_3              21               131
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       16     23     27
  1P GAIN WILD-TYPE    124    154    149
D1V6, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              16               124
  CLUS_2              23               154
  CLUS_3              27               149
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       17     32     19
  1P GAIN WILD-TYPE    128    184    127
D1V7, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              17               128
  CLUS_2              32               184
  CLUS_3              19               127
D1V8, binary
                   cls
clus                  0   1
  1P GAIN MUTATED    29  39
  1P GAIN WILD-TYPE 161 278
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     29   39
  1P GAIN WILD-TYPE  161  278
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              29               161
  CLUS_2              39               278
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       23     22     21
  1P GAIN WILD-TYPE    151    137    117
D1V9, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              23               151
  CLUS_2              22               137
  CLUS_3              21               117
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       25     33      8
  1P GAIN WILD-TYPE    142    197     66
D1V10, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              25               142
  CLUS_2              33               197
  CLUS_3               8                66

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       52     37     21      7
  1Q GAIN WILD-TYPE    126     65    168     35
D2V1, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              52               126
  CLUS_2              37                65
  CLUS_3              21               168
  CLUS_4               7                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q GAIN MUTATED       24     25     39     15      4      7      3
  1Q GAIN WILD-TYPE     49     70     53     64     67     72     19
D2V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       10     17     11     14
  1Q GAIN WILD-TYPE     43     34     26     51
D2V3, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              10                43
  CLUS_2              17                34
  CLUS_3              11                26
  CLUS_4              14                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        5     16     31
  1Q GAIN WILD-TYPE     11     56     87
D2V4, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               5                11
  CLUS_2              16                56
  CLUS_3              31                87
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       67     23     24
  1Q GAIN WILD-TYPE    140    111    128
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              67               140
  CLUS_2              23               111
  CLUS_3              24               128
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       25     30     59
  1Q GAIN WILD-TYPE    115    147    117
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              25               115
  CLUS_2              30               147
  CLUS_3              59               117
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       22     66     29
  1Q GAIN WILD-TYPE    123    150    117
D2V7, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              22               123
  CLUS_2              66               150
  CLUS_3              29               117
D2V8, binary
                   cls
clus                  0   1
  1Q GAIN MUTATED    38  79
  1Q GAIN WILD-TYPE 152 238
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     38   79
  1Q GAIN WILD-TYPE  152  238
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              38               152
  CLUS_2              79               238
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       28     49     34
  1Q GAIN WILD-TYPE    146    110    104
D2V9, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              28               146
  CLUS_2              49               110
  CLUS_3              34               104
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       35     65     11
  1Q GAIN WILD-TYPE    132    165     63
D2V10, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              35               132
  CLUS_2              65               165
  CLUS_3              11                63

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED       41     31     12      6
  2P GAIN WILD-TYPE    137     71    177     36
D3V1, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              41               137
  CLUS_2              31                71
  CLUS_3              12               177
  CLUS_4               6                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2P GAIN MUTATED       25     17     33      3      5      5      2
  2P GAIN WILD-TYPE     48     78     59     76     66     74     20
D3V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED       11     20      8     11
  2P GAIN WILD-TYPE     42     31     29     54
D3V3, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              11                42
  CLUS_2              20                31
  CLUS_3               8                29
  CLUS_4              11                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        5     16     29
  2P GAIN WILD-TYPE     11     56     89
D3V4, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               5                11
  CLUS_2              16                56
  CLUS_3              29                89
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       44     27     18
  2P GAIN WILD-TYPE    163    107    134
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              44               163
  CLUS_2              27               107
  CLUS_3              18               134
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       27     22     40
  2P GAIN WILD-TYPE    113    155    136
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              27               113
  CLUS_2              22               155
  CLUS_3              40               136
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       19     46     24
  2P GAIN WILD-TYPE    126    170    122
D3V7, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              19               126
  CLUS_2              46               170
  CLUS_3              24               122
D3V8, binary
                   cls
clus                  0   1
  2P GAIN MUTATED    30  59
  2P GAIN WILD-TYPE 160 258
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     30   59
  2P GAIN WILD-TYPE  160  258
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              30               160
  CLUS_2              59               258
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       24     29     32
  2P GAIN WILD-TYPE    150    130    106
D3V9, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              24               150
  CLUS_2              29               130
  CLUS_3              32               106
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       32     39     14
  2P GAIN WILD-TYPE    135    191     60
D3V10, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              32               135
  CLUS_2              39               191
  CLUS_3              14                60

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED       34     23      8      4
  2Q GAIN WILD-TYPE    144     79    181     38
D4V1, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              34               144
  CLUS_2              23                79
  CLUS_3               8               181
  CLUS_4               4                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2Q GAIN MUTATED       23     13     24      1      2      3      3
  2Q GAIN WILD-TYPE     50     82     68     78     69     76     19
D4V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED       10     13      5     11
  2Q GAIN WILD-TYPE     43     38     32     54
D4V3, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              10                43
  CLUS_2              13                38
  CLUS_3               5                32
  CLUS_4              11                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        2     13     24
  2Q GAIN WILD-TYPE     14     59     94
D4V4, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               2                14
  CLUS_2              13                59
  CLUS_3              24                94
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       32     23     13
  2Q GAIN WILD-TYPE    175    111    139
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              32               175
  CLUS_2              23               111
  CLUS_3              13               139
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       23     15     30
  2Q GAIN WILD-TYPE    117    162    146
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              23               117
  CLUS_2              15               162
  CLUS_3              30               146
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       14     34     20
  2Q GAIN WILD-TYPE    131    182    126
D4V7, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              14               131
  CLUS_2              34               182
  CLUS_3              20               126
D4V8, binary
                   cls
clus                  0   1
  2Q GAIN MUTATED    25  43
  2Q GAIN WILD-TYPE 165 274
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED     25   43
  2Q GAIN WILD-TYPE  165  274
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              25               165
  CLUS_2              43               274
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       18     21     25
  2Q GAIN WILD-TYPE    156    138    113
D4V9, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              18               156
  CLUS_2              21               138
  CLUS_3              25               113
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       27     29      8
  2Q GAIN WILD-TYPE    140    201     66
D4V10, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              27               140
  CLUS_2              29               201
  CLUS_3               8                66

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED       21     26     23      9
  3P GAIN WILD-TYPE    157     76    166     33
D5V1, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              21               157
  CLUS_2              26                76
  CLUS_3              23               166
  CLUS_4               9                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P GAIN MUTATED       11      9     15     26      5     11      2
  3P GAIN WILD-TYPE     62     86     77     53     66     68     20
D5V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        4     13      7      8
  3P GAIN WILD-TYPE     49     38     30     57
D5V3, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               4                49
  CLUS_2              13                38
  CLUS_3               7                30
  CLUS_4               8                57
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        6      9     17
  3P GAIN WILD-TYPE     10     63    101
D5V4, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               6                10
  CLUS_2               9                63
  CLUS_3              17               101
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       47     17     14
  3P GAIN WILD-TYPE    160    117    138
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              47               160
  CLUS_2              17               117
  CLUS_3              14               138
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       17     20     41
  3P GAIN WILD-TYPE    123    157    135
D5V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              17               123
  CLUS_2              20               157
  CLUS_3              41               135
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       15     46     18
  3P GAIN WILD-TYPE    130    170    128
D5V7, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              15               130
  CLUS_2              46               170
  CLUS_3              18               128
D5V8, binary
                   cls
clus                  0   1
  3P GAIN MUTATED    24  55
  3P GAIN WILD-TYPE 166 262
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     24   55
  3P GAIN WILD-TYPE  166  262
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              24               166
  CLUS_2              55               262
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       18     32     20
  3P GAIN WILD-TYPE    156    127    118
D5V9, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              18               156
  CLUS_2              32               127
  CLUS_3              20               118
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       23     41      6
  3P GAIN WILD-TYPE    144    189     68
D5V10, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              23               144
  CLUS_2              41               189
  CLUS_3               6                68

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED       95     66     67     21
  3Q GAIN WILD-TYPE     83     36    122     21
D6V1, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              95                83
  CLUS_2              66                36
  CLUS_3              67               122
  CLUS_4              21                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q GAIN MUTATED       42     53     54     47     14     29     10
  3Q GAIN WILD-TYPE     31     42     38     32     57     50     12
D6V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED       27     30     17     34
  3Q GAIN WILD-TYPE     26     21     20     31
D6V3, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              27                26
  CLUS_2              30                21
  CLUS_3              17                20
  CLUS_4              34                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        9     35     64
  3Q GAIN WILD-TYPE      7     37     54
D6V4, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               9                 7
  CLUS_2              35                37
  CLUS_3              64                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED      118     69     56
  3Q GAIN WILD-TYPE     89     65     96
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1             118                89
  CLUS_2              69                65
  CLUS_3              56                96
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       73     69    101
  3Q GAIN WILD-TYPE     67    108     75
D6V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              73                67
  CLUS_2              69               108
  CLUS_3             101                75
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       55    124     69
  3Q GAIN WILD-TYPE     90     92     77
D6V7, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              55                90
  CLUS_2             124                92
  CLUS_3              69                77
D6V8, binary
                   cls
clus                  0   1
  3Q GAIN MUTATED    99 149
  3Q GAIN WILD-TYPE  91 168
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     99  149
  3Q GAIN WILD-TYPE   91  168
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              99                91
  CLUS_2             149               168
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       70     83     67
  3Q GAIN WILD-TYPE    104     76     71
D6V9, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              70               104
  CLUS_2              83                76
  CLUS_3              67                71
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       80    112     28
  3Q GAIN WILD-TYPE     87    118     46
D6V10, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              80                87
  CLUS_2             112               118
  CLUS_3              28                46

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED       24      6      6      3
  4P GAIN WILD-TYPE    154     96    183     39
D7V1, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              24               154
  CLUS_2               6                96
  CLUS_3               6               183
  CLUS_4               3                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P GAIN MUTATED        6     19      6      4      1      2      1
  4P GAIN WILD-TYPE     67     76     86     75     70     77     21
D7V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        4      4      5      9
  4P GAIN WILD-TYPE     49     47     32     56
D7V3, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               4                49
  CLUS_2               4                47
  CLUS_3               5                32
  CLUS_4               9                56
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        2      8     12
  4P GAIN WILD-TYPE     14     64    106
D7V4, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                14
  CLUS_2               8                64
  CLUS_3              12               106
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       10     10     18
  4P GAIN WILD-TYPE    197    124    134
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              10               197
  CLUS_2              10               124
  CLUS_3              18               134
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       10     20      8
  4P GAIN WILD-TYPE    130    157    168
D7V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              10               130
  CLUS_2              20               157
  CLUS_3               8               168
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        8     14     17
  4P GAIN WILD-TYPE    137    202    129
D7V7, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               8               137
  CLUS_2              14               202
  CLUS_3              17               129
D7V8, binary
                   cls
clus                  0   1
  4P GAIN MUTATED    19  20
  4P GAIN WILD-TYPE 171 297
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED     19   20
  4P GAIN WILD-TYPE  171  297
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              19               171
  CLUS_2              20               297
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       13      9     13
  4P GAIN WILD-TYPE    161    150    125
D7V9, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              13               161
  CLUS_2               9               150
  CLUS_3              13               125
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       14     13      8
  4P GAIN WILD-TYPE    153    217     66
D7V10, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              14               153
  CLUS_2              13               217
  CLUS_3               8                66

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED       19      6      8      2
  4Q GAIN WILD-TYPE    159     96    181     40
D8V1, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              19               159
  CLUS_2               6                96
  CLUS_3               8               181
  CLUS_4               2                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4Q GAIN MUTATED        7     10      6      5      3      2      2
  4Q GAIN WILD-TYPE     66     85     86     74     68     77     20
D8V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        4      4      3      6
  4Q GAIN WILD-TYPE     49     47     34     59
D8V3, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               4                49
  CLUS_2               4                47
  CLUS_3               3                34
  CLUS_4               6                59
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        1      5     11
  4Q GAIN WILD-TYPE     15     67    107
D8V4, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                15
  CLUS_2               5                67
  CLUS_3              11               107
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       13      8     13
  4Q GAIN WILD-TYPE    194    126    139
D8V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              13               194
  CLUS_2               8               126
  CLUS_3              13               139
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        7     18      9
  4Q GAIN WILD-TYPE    133    159    167
D8V6, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               7               133
  CLUS_2              18               159
  CLUS_3               9               167
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       10     16      9
  4Q GAIN WILD-TYPE    135    200    137
D8V7, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              10               135
  CLUS_2              16               200
  CLUS_3               9               137
D8V8, binary
                   cls
clus                  0   1
  4Q GAIN MUTATED    12  23
  4Q GAIN WILD-TYPE 178 294
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED     12   23
  4Q GAIN WILD-TYPE  178  294
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              12               178
  CLUS_2              23               294
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       11     10     10
  4Q GAIN WILD-TYPE    163    149    128
D8V9, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              11               163
  CLUS_2              10               149
  CLUS_3              10               128
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        9     15      7
  4Q GAIN WILD-TYPE    158    215     67
D8V10, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               9               158
  CLUS_2              15               215
  CLUS_3               7                67

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED       90     55     36     14
  5P GAIN WILD-TYPE     88     47    153     28
D9V1, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              90                88
  CLUS_2              55                47
  CLUS_3              36               153
  CLUS_4              14                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P GAIN MUTATED       32     44     42     30     14     23     10
  5P GAIN WILD-TYPE     41     51     50     49     57     56     12
D9V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED       20     17     13     22
  5P GAIN WILD-TYPE     33     34     24     43
D9V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              20                33
  CLUS_2              17                34
  CLUS_3              13                24
  CLUS_4              22                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        4     24     44
  5P GAIN WILD-TYPE     12     48     74
D9V4, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               4                12
  CLUS_2              24                48
  CLUS_3              44                74
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       85     58     48
  5P GAIN WILD-TYPE    122     76    104
D9V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              85               122
  CLUS_2              58                76
  CLUS_3              48               104
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       56     60     75
  5P GAIN WILD-TYPE     84    117    101
D9V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              56                84
  CLUS_2              60               117
  CLUS_3              75               101
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       50     84     58
  5P GAIN WILD-TYPE     95    132     88
D9V7, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              50                95
  CLUS_2              84               132
  CLUS_3              58                88
D9V8, binary
                   cls
clus                  0   1
  5P GAIN MUTATED    72 120
  5P GAIN WILD-TYPE 118 197
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     72  120
  5P GAIN WILD-TYPE  118  197
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              72               118
  CLUS_2             120               197
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       65     59     54
  5P GAIN WILD-TYPE    109    100     84
D9V9, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              65               109
  CLUS_2              59               100
  CLUS_3              54                84
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       63     88     27
  5P GAIN WILD-TYPE    104    142     47
D9V10, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              63               104
  CLUS_2              88               142
  CLUS_3              27                47

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED       29     17     14      5
  5Q GAIN WILD-TYPE    149     85    175     37
D10V1, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              29               149
  CLUS_2              17                85
  CLUS_3              14               175
  CLUS_4               5                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q GAIN MUTATED        9     14     15     12      8      6      1
  5Q GAIN WILD-TYPE     64     81     77     67     63     73     21
D10V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        9      5      4      6
  5Q GAIN WILD-TYPE     44     46     33     59
D10V3, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               9                44
  CLUS_2               5                46
  CLUS_3               4                33
  CLUS_4               6                59
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        1     10     13
  5Q GAIN WILD-TYPE     15     62    105
D10V4, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                15
  CLUS_2              10                62
  CLUS_3              13               105
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       28     18     17
  5Q GAIN WILD-TYPE    179    116    135
D10V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              28               179
  CLUS_2              18               116
  CLUS_3              17               135
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       18     24     21
  5Q GAIN WILD-TYPE    122    153    155
D10V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              18               122
  CLUS_2              24               153
  CLUS_3              21               155
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       18     30     16
  5Q GAIN WILD-TYPE    127    186    130
D10V7, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              18               127
  CLUS_2              30               186
  CLUS_3              16               130
D10V8, binary
                   cls
clus                  0   1
  5Q GAIN MUTATED    20  44
  5Q GAIN WILD-TYPE 170 273
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     20   44
  5Q GAIN WILD-TYPE  170  273
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              20               170
  CLUS_2              44               273
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       26     21     14
  5Q GAIN WILD-TYPE    148    138    124
D10V9, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              26               148
  CLUS_2              21               138
  CLUS_3              14               124
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       18     34      9
  5Q GAIN WILD-TYPE    149    196     65
D10V10, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              18               149
  CLUS_2              34               196
  CLUS_3               9                65

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED       43     15     11     11
  6P GAIN WILD-TYPE    135     87    178     31
D11V1, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              43               135
  CLUS_2              15                87
  CLUS_3              11               178
  CLUS_4              11                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P GAIN MUTATED       18     23     17      6      7      7      2
  6P GAIN WILD-TYPE     55     72     75     73     64     72     20
D11V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        7      8      8      7
  6P GAIN WILD-TYPE     46     43     29     58
D11V3, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               7                46
  CLUS_2               8                43
  CLUS_3               8                29
  CLUS_4               7                58
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        3     12     15
  6P GAIN WILD-TYPE     13     60    103
D11V4, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               3                13
  CLUS_2              12                60
  CLUS_3              15               103
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       31     19     27
  6P GAIN WILD-TYPE    176    115    125
D11V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              31               176
  CLUS_2              19               115
  CLUS_3              27               125
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       19     30     28
  6P GAIN WILD-TYPE    121    147    148
D11V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              19               121
  CLUS_2              30               147
  CLUS_3              28               148
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       26     30     23
  6P GAIN WILD-TYPE    119    186    123
D11V7, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              26               119
  CLUS_2              30               186
  CLUS_3              23               123
D11V8, binary
                   cls
clus                  0   1
  6P GAIN MUTATED    33  46
  6P GAIN WILD-TYPE 157 271
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED     33   46
  6P GAIN WILD-TYPE  157  271
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              33               157
  CLUS_2              46               271
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       32     19     23
  6P GAIN WILD-TYPE    142    140    115
D11V9, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              32               142
  CLUS_2              19               140
  CLUS_3              23               115
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       26     33     15
  6P GAIN WILD-TYPE    141    197     59
D11V10, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              26               141
  CLUS_2              33               197
  CLUS_3              15                59

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED       32     11      8     10
  6Q GAIN WILD-TYPE    146     91    181     32
D12V1, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              32               146
  CLUS_2              11                91
  CLUS_3               8               181
  CLUS_4              10                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q GAIN MUTATED       10     19     13      3      8      6      2
  6Q GAIN WILD-TYPE     63     76     79     76     63     73     20
D12V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        7      4      7      4
  6Q GAIN WILD-TYPE     46     47     30     61
D12V3, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               7                46
  CLUS_2               4                47
  CLUS_3               7                30
  CLUS_4               4                61
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        1     12      9
  6Q GAIN WILD-TYPE     15     60    109
D12V4, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               1                15
  CLUS_2              12                60
  CLUS_3               9               109
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       20     13     26
  6Q GAIN WILD-TYPE    187    121    126
D12V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              20               187
  CLUS_2              13               121
  CLUS_3              26               126
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       12     31     16
  6Q GAIN WILD-TYPE    128    146    160
D12V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              12               128
  CLUS_2              31               146
  CLUS_3              16               160
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       24     21     15
  6Q GAIN WILD-TYPE    121    195    131
D12V7, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              24               121
  CLUS_2              21               195
  CLUS_3              15               131
D12V8, binary
                   cls
clus                  0   1
  6Q GAIN MUTATED    24  36
  6Q GAIN WILD-TYPE 166 281
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED     24   36
  6Q GAIN WILD-TYPE  166  281
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              24               166
  CLUS_2              36               281
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       29     13     15
  6Q GAIN WILD-TYPE    145    146    123
D12V9, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              29               145
  CLUS_2              13               146
  CLUS_3              15               123
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       20     24     13
  6Q GAIN WILD-TYPE    147    206     61
D12V10, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              20               147
  CLUS_2              24               206
  CLUS_3              13                61

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       87     44     34     15
  7P GAIN WILD-TYPE     91     58    155     27
D13V1, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              87                91
  CLUS_2              44                58
  CLUS_3              34               155
  CLUS_4              15                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7P GAIN MUTATED       32     41     51      5     24     20      7
  7P GAIN WILD-TYPE     41     54     41     74     47     59     15
D13V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       23     24     15     23
  7P GAIN WILD-TYPE     30     27     22     42
D13V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              23                30
  CLUS_2              24                27
  CLUS_3              15                22
  CLUS_4              23                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        5     33     47
  7P GAIN WILD-TYPE     11     39     71
D13V4, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               5                11
  CLUS_2              33                39
  CLUS_3              47                71
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       66     48     61
  7P GAIN WILD-TYPE    141     86     91
D13V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              66               141
  CLUS_2              48                86
  CLUS_3              61                91
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       49     72     54
  7P GAIN WILD-TYPE     91    105    122
D13V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              49                91
  CLUS_2              72               105
  CLUS_3              54               122
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       49     80     48
  7P GAIN WILD-TYPE     96    136     98
D13V7, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              49                96
  CLUS_2              80               136
  CLUS_3              48                98
D13V8, binary
                   cls
clus                  0   1
  7P GAIN MUTATED    67 110
  7P GAIN WILD-TYPE 123 207
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     67  110
  7P GAIN WILD-TYPE  123  207
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              67               123
  CLUS_2             110               207
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       60     50     53
  7P GAIN WILD-TYPE    114    109     85
D13V9, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              60               114
  CLUS_2              50               109
  CLUS_3              53                85
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       59     77     27
  7P GAIN WILD-TYPE    108    153     47
D13V10, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              59               108
  CLUS_2              77               153
  CLUS_3              27                47

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       55     38     18     12
  7Q GAIN WILD-TYPE    123     64    171     30
D14V1, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              55               123
  CLUS_2              38                64
  CLUS_3              18               171
  CLUS_4              12                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q GAIN MUTATED       24     24     46      5     12      9      3
  7Q GAIN WILD-TYPE     49     71     46     74     59     70     19
D14V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       16     21      9     15
  7Q GAIN WILD-TYPE     37     30     28     50
D14V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              16                37
  CLUS_2              21                30
  CLUS_3               9                28
  CLUS_4              15                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        4     21     36
  7Q GAIN WILD-TYPE     12     51     82
D14V4, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               4                12
  CLUS_2              21                51
  CLUS_3              36                82
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       55     33     32
  7Q GAIN WILD-TYPE    152    101    120
D14V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              55               152
  CLUS_2              33               101
  CLUS_3              32               120
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       35     41     44
  7Q GAIN WILD-TYPE    105    136    132
D14V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              35               105
  CLUS_2              41               136
  CLUS_3              44               132
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       28     67     27
  7Q GAIN WILD-TYPE    117    149    119
D14V7, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              28               117
  CLUS_2              67               149
  CLUS_3              27               119
D14V8, binary
                   cls
clus                  0   1
  7Q GAIN MUTATED    42  80
  7Q GAIN WILD-TYPE 148 237
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     42   80
  7Q GAIN WILD-TYPE  148  237
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              42               148
  CLUS_2              80               237
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       37     40     37
  7Q GAIN WILD-TYPE    137    119    101
D14V9, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              37               137
  CLUS_2              40               119
  CLUS_3              37               101
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       40     61     13
  7Q GAIN WILD-TYPE    127    169     61
D14V10, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              40               127
  CLUS_2              61               169
  CLUS_3              13                61

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED       50     39     40     19
  8P GAIN WILD-TYPE    128     63    149     23
D15V1, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              50               128
  CLUS_2              39                63
  CLUS_3              40               149
  CLUS_4              19                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P GAIN MUTATED       28     25     25     23     14     22     11
  8P GAIN WILD-TYPE     45     70     67     56     57     57     11
D15V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED       12     17     12     17
  8P GAIN WILD-TYPE     41     34     25     48
D15V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              12                41
  CLUS_2              17                34
  CLUS_3              12                25
  CLUS_4              17                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        6     18     34
  8P GAIN WILD-TYPE     10     54     84
D15V4, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               6                10
  CLUS_2              18                54
  CLUS_3              34                84
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       66     33     43
  8P GAIN WILD-TYPE    141    101    109
D15V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              66               141
  CLUS_2              33               101
  CLUS_3              43               109
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       35     45     62
  8P GAIN WILD-TYPE    105    132    114
D15V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              35               105
  CLUS_2              45               132
  CLUS_3              62               114
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       39     67     41
  8P GAIN WILD-TYPE    106    149    105
D15V7, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              39               106
  CLUS_2              67               149
  CLUS_3              41               105
D15V8, binary
                   cls
clus                  0   1
  8P GAIN MUTATED    50  97
  8P GAIN WILD-TYPE 140 220
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     50   97
  8P GAIN WILD-TYPE  140  220
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              50               140
  CLUS_2              97               220
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       53     48     34
  8P GAIN WILD-TYPE    121    111    104
D15V9, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              53               121
  CLUS_2              48               111
  CLUS_3              34               104
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       45     71     19
  8P GAIN WILD-TYPE    122    159     55
D15V10, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              45               122
  CLUS_2              71               159
  CLUS_3              19                55

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED      129     56     87     32
  8Q GAIN WILD-TYPE     49     46    102     10
D16V1, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1             129                49
  CLUS_2              56                46
  CLUS_3              87               102
  CLUS_4              32                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q GAIN MUTATED       42     74     51     31     38     52     16
  8Q GAIN WILD-TYPE     31     21     41     48     33     27      6
D16V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       29     24     24     45
  8Q GAIN WILD-TYPE     24     27     13     20
D16V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              29                24
  CLUS_2              24                27
  CLUS_3              24                13
  CLUS_4              45                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        7     43     72
  8Q GAIN WILD-TYPE      9     29     46
D16V4, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               7                 9
  CLUS_2              43                29
  CLUS_3              72                46
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED      113     88     93
  8Q GAIN WILD-TYPE     94     46     59
D16V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1             113                94
  CLUS_2              88                46
  CLUS_3              93                59
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       94    110     90
  8Q GAIN WILD-TYPE     46     67     86
D16V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              94                46
  CLUS_2             110                67
  CLUS_3              90                86
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       83    121     98
  8Q GAIN WILD-TYPE     62     95     48
D16V7, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              83                62
  CLUS_2             121                95
  CLUS_3              98                48
D16V8, binary
                   cls
clus                  0   1
  8Q GAIN MUTATED   128 174
  8Q GAIN WILD-TYPE  62 143
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED    128  174
  8Q GAIN WILD-TYPE   62  143
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1             128                62
  CLUS_2             174               143
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED      109     80     93
  8Q GAIN WILD-TYPE     65     79     45
D16V9, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1             109                65
  CLUS_2              80                79
  CLUS_3              93                45
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED      114    124     44
  8Q GAIN WILD-TYPE     53    106     30
D16V10, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1             114                53
  CLUS_2             124               106
  CLUS_3              44                30

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED       22     12     34     34
  9P GAIN WILD-TYPE    156     90    155      8
D17V1, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              22               156
  CLUS_2              12                90
  CLUS_3              34               155
  CLUS_4              34                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P GAIN MUTATED        6     16     18     13     29     13      7
  9P GAIN WILD-TYPE     67     79     74     66     42     66     15
D17V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED       12     11     11     11
  9P GAIN WILD-TYPE     41     40     26     54
D17V3, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              12                41
  CLUS_2              11                40
  CLUS_3              11                26
  CLUS_4              11                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        4     22     19
  9P GAIN WILD-TYPE     12     50     99
D17V4, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               4                12
  CLUS_2              22                50
  CLUS_3              19                99
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       28     24     44
  9P GAIN WILD-TYPE    179    110    108
D17V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              28               179
  CLUS_2              24               110
  CLUS_3              44               108
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       25     47     24
  9P GAIN WILD-TYPE    115    130    152
D17V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              25               115
  CLUS_2              47               130
  CLUS_3              24               152
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       42     34     26
  9P GAIN WILD-TYPE    103    182    120
D17V7, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              42               103
  CLUS_2              34               182
  CLUS_3              26               120
D17V8, binary
                   cls
clus                  0   1
  9P GAIN MUTATED    38  64
  9P GAIN WILD-TYPE 152 253
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     38   64
  9P GAIN WILD-TYPE  152  253
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              38               152
  CLUS_2              64               253
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       44     35     20
  9P GAIN WILD-TYPE    130    124    118
D17V9, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              44               130
  CLUS_2              35               124
  CLUS_3              20               118
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       34     46     19
  9P GAIN WILD-TYPE    133    184     55
D17V10, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              34               133
  CLUS_2              46               184
  CLUS_3              19                55

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED       35     31     36     34
  9Q GAIN WILD-TYPE    143     71    153      8
D18V1, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              35               143
  CLUS_2              31                71
  CLUS_3              36               153
  CLUS_4              34                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q GAIN MUTATED       18     22     25     17     30     15      9
  9Q GAIN WILD-TYPE     55     73     67     62     41     64     13
D18V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED       16     16     17     15
  9Q GAIN WILD-TYPE     37     35     20     50
D18V3, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              16                37
  CLUS_2              16                35
  CLUS_3              17                20
  CLUS_4              15                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        6     27     31
  9Q GAIN WILD-TYPE     10     45     87
D18V4, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               6                10
  CLUS_2              27                45
  CLUS_3              31                87
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       50     33     48
  9Q GAIN WILD-TYPE    157    101    104
D18V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              50               157
  CLUS_2              33               101
  CLUS_3              48               104
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       33     57     41
  9Q GAIN WILD-TYPE    107    120    135
D18V6, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              33               107
  CLUS_2              57               120
  CLUS_3              41               135
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       43     55     38
  9Q GAIN WILD-TYPE    102    161    108
D18V7, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              43               102
  CLUS_2              55               161
  CLUS_3              38               108
D18V8, binary
                   cls
clus                  0   1
  9Q GAIN MUTATED    50  86
  9Q GAIN WILD-TYPE 140 231
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     50   86
  9Q GAIN WILD-TYPE  140  231
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              50               140
  CLUS_2              86               231
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       53     43     31
  9Q GAIN WILD-TYPE    121    116    107
D18V9, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              53               121
  CLUS_2              43               116
  CLUS_3              31               107
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       44     60     23
  9Q GAIN WILD-TYPE    123    170     51
D18V10, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              44               123
  CLUS_2              60               170
  CLUS_3              23                51

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED       16     13      8      3
  10P GAIN WILD-TYPE    162     89    181     39
D19V1, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               16                162
  CLUS_2               13                 89
  CLUS_3                8                181
  CLUS_4                3                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P GAIN MUTATED       18      4      7      5      2      2      2
  10P GAIN WILD-TYPE     55     91     85     74     69     77     20
D19V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        3      6      4      4
  10P GAIN WILD-TYPE     50     45     33     61
D19V3, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                3                 50
  CLUS_2                6                 45
  CLUS_3                4                 33
  CLUS_4                4                 61
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        1      4     12
  10P GAIN WILD-TYPE     15     68    106
D19V4, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                4                 68
  CLUS_3               12                106
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       23      5     10
  10P GAIN WILD-TYPE    184    129    142
D19V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               23                184
  CLUS_2                5                129
  CLUS_3               10                142
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        5     10     23
  10P GAIN WILD-TYPE    135    167    153
D19V6, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                5                135
  CLUS_2               10                167
  CLUS_3               23                153
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       12     22      5
  10P GAIN WILD-TYPE    133    194    141
D19V7, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               12                133
  CLUS_2               22                194
  CLUS_3                5                141
D19V8, binary
                    cls
clus                   0   1
  10P GAIN MUTATED     9  30
  10P GAIN WILD-TYPE 181 287
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      9   30
  10P GAIN WILD-TYPE  181  287
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                9                181
  CLUS_2               30                287
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       14     13      9
  10P GAIN WILD-TYPE    160    146    129
D19V9, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               14                160
  CLUS_2               13                146
  CLUS_3                9                129
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        9     23      4
  10P GAIN WILD-TYPE    158    207     70
D19V10, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                9                158
  CLUS_2               23                207
  CLUS_3                4                 70

Clustering(20) Variable = 10Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED       14     13      3      4
  10Q GAIN WILD-TYPE    164     89    186     38
D20V1, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               14                164
  CLUS_2               13                 89
  CLUS_3                3                186
  CLUS_4                4                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q GAIN MUTATED        9      6      8      4      4      2      1
  10Q GAIN WILD-TYPE     64     89     84     75     67     77     21
D20V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        3      5      6      2
  10Q GAIN WILD-TYPE     50     46     31     63
D20V3, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                 50
  CLUS_2                5                 46
  CLUS_3                6                 31
  CLUS_4                2                 63
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        2      7      7
  10Q GAIN WILD-TYPE     14     65    111
D20V4, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                2                 14
  CLUS_2                7                 65
  CLUS_3                7                111
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       12     11      9
  10Q GAIN WILD-TYPE    195    123    143
D20V5, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               12                195
  CLUS_2               11                123
  CLUS_3                9                143
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       11      8     13
  10Q GAIN WILD-TYPE    129    169    163
D20V6, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               11                129
  CLUS_2                8                169
  CLUS_3               13                163
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       12     12     10
  10Q GAIN WILD-TYPE    133    204    136
D20V7, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               12                133
  CLUS_2               12                204
  CLUS_3               10                136
D20V8, binary
                    cls
clus                   0   1
  10Q GAIN MUTATED    15  19
  10Q GAIN WILD-TYPE 175 298
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED     15   19
  10Q GAIN WILD-TYPE  175  298
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               15                175
  CLUS_2               19                298
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       12     12      8
  10Q GAIN WILD-TYPE    162    147    130
D20V9, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               12                162
  CLUS_2               12                147
  CLUS_3                8                130
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       13     17      2
  10Q GAIN WILD-TYPE    154    213     72
D20V10, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               13                154
  CLUS_2               17                213
  CLUS_3                2                 72

Clustering(21) Variable = 11P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED       35      3     16     11
  11P GAIN WILD-TYPE    143     99    173     31
D21V1, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               35                143
  CLUS_2                3                 99
  CLUS_3               16                173
  CLUS_4               11                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P GAIN MUTATED        3     25     13      5     10      3      6
  11P GAIN WILD-TYPE     70     70     79     74     61     76     16
D21V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        8      6      4      8
  11P GAIN WILD-TYPE     45     45     33     57
D21V3, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                8                 45
  CLUS_2                6                 45
  CLUS_3                4                 33
  CLUS_4                8                 57
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        2     10     14
  11P GAIN WILD-TYPE     14     62    104
D21V4, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                 14
  CLUS_2               10                 62
  CLUS_3               14                104
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       21     16     25
  11P GAIN WILD-TYPE    186    118    127
D21V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               21                186
  CLUS_2               16                118
  CLUS_3               25                127
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       18     30     14
  11P GAIN WILD-TYPE    122    147    162
D21V6, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               18                122
  CLUS_2               30                147
  CLUS_3               14                162
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       26     20     17
  11P GAIN WILD-TYPE    119    196    129
D21V7, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               26                119
  CLUS_2               20                196
  CLUS_3               17                129
D21V8, binary
                    cls
clus                   0   1
  11P GAIN MUTATED    30  33
  11P GAIN WILD-TYPE 160 284
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED     30   33
  11P GAIN WILD-TYPE  160  284
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               30                160
  CLUS_2               33                284
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       28     18     13
  11P GAIN WILD-TYPE    146    141    125
D21V9, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               28                146
  CLUS_2               18                141
  CLUS_3               13                125
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       22     25     12
  11P GAIN WILD-TYPE    145    205     62
D21V10, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               22                145
  CLUS_2               25                205
  CLUS_3               12                 62

Clustering(22) Variable = 11Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED       40      9     14      7
  11Q GAIN WILD-TYPE    138     93    175     35
D22V1, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               40                138
  CLUS_2                9                 93
  CLUS_3               14                175
  CLUS_4                7                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q GAIN MUTATED       10     23     14      2     10      4      7
  11Q GAIN WILD-TYPE     63     72     78     77     61     75     15
D22V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        8      6      3     12
  11Q GAIN WILD-TYPE     45     45     34     53
D22V3, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                8                 45
  CLUS_2                6                 45
  CLUS_3                3                 34
  CLUS_4               12                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        1     11     17
  11Q GAIN WILD-TYPE     15     61    101
D22V4, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 15
  CLUS_2               11                 61
  CLUS_3               17                101
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       24     17     27
  11Q GAIN WILD-TYPE    183    117    125
D22V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               24                183
  CLUS_2               17                117
  CLUS_3               27                125
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       19     33     16
  11Q GAIN WILD-TYPE    121    144    160
D22V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               19                121
  CLUS_2               33                144
  CLUS_3               16                160
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       25     26     17
  11Q GAIN WILD-TYPE    120    190    129
D22V7, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               25                120
  CLUS_2               26                190
  CLUS_3               17                129
D22V8, binary
                    cls
clus                   0   1
  11Q GAIN MUTATED    27  41
  11Q GAIN WILD-TYPE 163 276
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED     27   41
  11Q GAIN WILD-TYPE  163  276
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               27                163
  CLUS_2               41                276
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       25     20     18
  11Q GAIN WILD-TYPE    149    139    120
D22V9, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               25                149
  CLUS_2               20                139
  CLUS_3               18                120
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       24     28     11
  11Q GAIN WILD-TYPE    143    202     63
D22V10, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               24                143
  CLUS_2               28                202
  CLUS_3               11                 63

Clustering(23) Variable = 12P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       64     46     18     15
  12P GAIN WILD-TYPE    114     56    171     27
D23V1, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               64                114
  CLUS_2               46                 56
  CLUS_3               18                171
  CLUS_4               15                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12P GAIN MUTATED       31     28     43     18      9     11      3
  12P GAIN WILD-TYPE     42     67     49     61     62     68     19
D23V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       20     22      9     12
  12P GAIN WILD-TYPE     33     29     28     53
D23V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               20                 33
  CLUS_2               22                 29
  CLUS_3                9                 28
  CLUS_4               12                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        7     24     32
  12P GAIN WILD-TYPE      9     48     86
D23V4, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                7                  9
  CLUS_2               24                 48
  CLUS_3               32                 86
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       72     33     33
  12P GAIN WILD-TYPE    135    101    119
D23V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               72                135
  CLUS_2               33                101
  CLUS_3               33                119
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       33     41     64
  12P GAIN WILD-TYPE    107    136    112
D23V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               33                107
  CLUS_2               41                136
  CLUS_3               64                112
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       33     72     37
  12P GAIN WILD-TYPE    112    144    109
D23V7, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               33                112
  CLUS_2               72                144
  CLUS_3               37                109
D23V8, binary
                    cls
clus                   0   1
  12P GAIN MUTATED    51  91
  12P GAIN WILD-TYPE 139 226
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     51   91
  12P GAIN WILD-TYPE  139  226
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               51                139
  CLUS_2               91                226
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       45     50     37
  12P GAIN WILD-TYPE    129    109    101
D23V9, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               45                129
  CLUS_2               50                109
  CLUS_3               37                101
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       43     70     19
  12P GAIN WILD-TYPE    124    160     55
D23V10, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               43                124
  CLUS_2               70                160
  CLUS_3               19                 55

Clustering(24) Variable = 12Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED       37     27     11     12
  12Q GAIN WILD-TYPE    141     75    178     30
D24V1, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               37                141
  CLUS_2               27                 75
  CLUS_3               11                178
  CLUS_4               12                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q GAIN MUTATED       23     19     18     14      5      6      2
  12Q GAIN WILD-TYPE     50     76     74     65     66     73     20
D24V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED       13     14      5      8
  12Q GAIN WILD-TYPE     40     37     32     57
D24V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               13                 40
  CLUS_2               14                 37
  CLUS_3                5                 32
  CLUS_4                8                 57
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        6     15     19
  12Q GAIN WILD-TYPE     10     57     99
D24V4, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                6                 10
  CLUS_2               15                 57
  CLUS_3               19                 99
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       44     21     19
  12Q GAIN WILD-TYPE    163    113    133
D24V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               44                163
  CLUS_2               21                113
  CLUS_3               19                133
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       20     21     43
  12Q GAIN WILD-TYPE    120    156    133
D24V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               20                120
  CLUS_2               21                156
  CLUS_3               43                133
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       26     40     21
  12Q GAIN WILD-TYPE    119    176    125
D24V7, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               26                119
  CLUS_2               40                176
  CLUS_3               21                125
D24V8, binary
                    cls
clus                   0   1
  12Q GAIN MUTATED    31  56
  12Q GAIN WILD-TYPE 159 261
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     31   56
  12Q GAIN WILD-TYPE  159  261
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               31                159
  CLUS_2               56                261
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       30     28     20
  12Q GAIN WILD-TYPE    144    131    118
D24V9, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               30                144
  CLUS_2               28                131
  CLUS_3               20                118
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       27     42      9
  12Q GAIN WILD-TYPE    140    188     65
D24V10, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               27                140
  CLUS_2               42                188
  CLUS_3                9                 65

Clustering(25) Variable = 13Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED       41      3     10      2
  13Q GAIN WILD-TYPE    137     99    179     40
D25V1, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               41                137
  CLUS_2                3                 99
  CLUS_3               10                179
  CLUS_4                2                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q GAIN MUTATED       10     17     10      4      4      4      7
  13Q GAIN WILD-TYPE     63     78     82     75     67     75     15
D25V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        7      7      2      9
  13Q GAIN WILD-TYPE     46     44     35     56
D25V3, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                7                 46
  CLUS_2                7                 44
  CLUS_3                2                 35
  CLUS_4                9                 56
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        3      7     15
  13Q GAIN WILD-TYPE     13     65    103
D25V4, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                3                 13
  CLUS_2                7                 65
  CLUS_3               15                103
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED       13     21     19
  13Q GAIN WILD-TYPE    194    113    133
D25V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               13                194
  CLUS_2               21                113
  CLUS_3               19                133
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED       22     21     10
  13Q GAIN WILD-TYPE    118    156    166
D25V6, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               22                118
  CLUS_2               21                156
  CLUS_3               10                166
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED       13     20     21
  13Q GAIN WILD-TYPE    132    196    125
D25V7, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               13                132
  CLUS_2               20                196
  CLUS_3               21                125
D25V8, binary
                    cls
clus                   0   1
  13Q GAIN MUTATED    27  27
  13Q GAIN WILD-TYPE 163 290
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED     27   27
  13Q GAIN WILD-TYPE  163  290
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               27                163
  CLUS_2               27                290
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED       17     13     19
  13Q GAIN WILD-TYPE    157    146    119
D25V9, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               17                157
  CLUS_2               13                146
  CLUS_3               19                119
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED       26     17      6
  13Q GAIN WILD-TYPE    141    213     68
D25V10, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               26                141
  CLUS_2               17                213
  CLUS_3                6                 68

Clustering(26) Variable = 14Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED       79     29     21     19
  14Q GAIN WILD-TYPE     99     73    168     23
D26V1, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               79                 99
  CLUS_2               29                 73
  CLUS_3               21                168
  CLUS_4               19                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q GAIN MUTATED       26     40     34      4     16     20      8
  14Q GAIN WILD-TYPE     47     55     58     75     55     59     14
D26V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED       16     13     17     19
  14Q GAIN WILD-TYPE     37     38     20     46
D26V3, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               16                 37
  CLUS_2               13                 38
  CLUS_3               17                 20
  CLUS_4               19                 46
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        3     25     37
  14Q GAIN WILD-TYPE     13     47     81
D26V4, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                3                 13
  CLUS_2               25                 47
  CLUS_3               37                 81
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       45     46     50
  14Q GAIN WILD-TYPE    162     88    102
D26V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               45                162
  CLUS_2               46                 88
  CLUS_3               50                102
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       44     56     41
  14Q GAIN WILD-TYPE     96    121    135
D26V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               44                 96
  CLUS_2               56                121
  CLUS_3               41                135
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       43     50     54
  14Q GAIN WILD-TYPE    102    166     92
D26V7, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               43                102
  CLUS_2               50                166
  CLUS_3               54                 92
D26V8, binary
                    cls
clus                   0   1
  14Q GAIN MUTATED    70  77
  14Q GAIN WILD-TYPE 120 240
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     70   77
  14Q GAIN WILD-TYPE  120  240
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               70                120
  CLUS_2               77                240
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       54     34     52
  14Q GAIN WILD-TYPE    120    125     86
D26V9, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               54                120
  CLUS_2               34                125
  CLUS_3               52                 86
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       61     50     29
  14Q GAIN WILD-TYPE    106    180     45
D26V10, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               61                106
  CLUS_2               50                180
  CLUS_3               29                 45

Clustering(27) Variable = 15Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED       31     17     17      6
  15Q GAIN WILD-TYPE    147     85    172     36
D27V1, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               31                147
  CLUS_2               17                 85
  CLUS_3               17                172
  CLUS_4                6                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q GAIN MUTATED       15     17     14      3     11      6      5
  15Q GAIN WILD-TYPE     58     78     78     76     60     73     17
D27V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        6     11      8      9
  15Q GAIN WILD-TYPE     47     40     29     56
D27V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                6                 47
  CLUS_2               11                 40
  CLUS_3                8                 29
  CLUS_4                9                 56
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        3     11     20
  15Q GAIN WILD-TYPE     13     61     98
D27V4, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 13
  CLUS_2               11                 61
  CLUS_3               20                 98
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       24     16     27
  15Q GAIN WILD-TYPE    183    118    125
D27V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               24                183
  CLUS_2               16                118
  CLUS_3               27                125
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       13     32     22
  15Q GAIN WILD-TYPE    127    145    154
D27V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               13                127
  CLUS_2               32                145
  CLUS_3               22                154
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       21     30     20
  15Q GAIN WILD-TYPE    124    186    126
D27V7, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               21                124
  CLUS_2               30                186
  CLUS_3               20                126
D27V8, binary
                    cls
clus                   0   1
  15Q GAIN MUTATED    23  48
  15Q GAIN WILD-TYPE 167 269
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED     23   48
  15Q GAIN WILD-TYPE  167  269
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               23                167
  CLUS_2               48                269
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       25     23     17
  15Q GAIN WILD-TYPE    149    136    121
D27V9, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               25                149
  CLUS_2               23                136
  CLUS_3               17                121
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       20     31     14
  15Q GAIN WILD-TYPE    147    199     60
D27V10, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               20                147
  CLUS_2               31                199
  CLUS_3               14                 60

Clustering(28) Variable = 16P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED       49     30     16      9
  16P GAIN WILD-TYPE    129     72    173     33
D28V1, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               49                129
  CLUS_2               30                 72
  CLUS_3               16                173
  CLUS_4                9                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P GAIN MUTATED       29     26     21      6      6     11      5
  16P GAIN WILD-TYPE     44     69     71     73     65     68     17
D28V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED       10     15     10     11
  16P GAIN WILD-TYPE     43     36     27     54
D28V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               10                 43
  CLUS_2               15                 36
  CLUS_3               10                 27
  CLUS_4               11                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        4     16     26
  16P GAIN WILD-TYPE     12     56     92
D28V4, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                4                 12
  CLUS_2               16                 56
  CLUS_3               26                 92
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       39     26     37
  16P GAIN WILD-TYPE    168    108    115
D28V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               39                168
  CLUS_2               26                108
  CLUS_3               37                115
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       25     40     37
  16P GAIN WILD-TYPE    115    137    139
D28V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               25                115
  CLUS_2               40                137
  CLUS_3               37                139
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       26     46     31
  16P GAIN WILD-TYPE    119    170    115
D28V7, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               26                119
  CLUS_2               46                170
  CLUS_3               31                115
D28V8, binary
                    cls
clus                   0   1
  16P GAIN MUTATED    39  64
  16P GAIN WILD-TYPE 151 253
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     39   64
  16P GAIN WILD-TYPE  151  253
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               39                151
  CLUS_2               64                253
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       33     33     33
  16P GAIN WILD-TYPE    141    126    105
D28V9, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               33                141
  CLUS_2               33                126
  CLUS_3               33                105
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       37     47     15
  16P GAIN WILD-TYPE    130    183     59
D28V10, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               37                130
  CLUS_2               47                183
  CLUS_3               15                 59

Clustering(29) Variable = 16Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED       54     28     13      9
  16Q GAIN WILD-TYPE    124     74    176     33
D29V1, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               54                124
  CLUS_2               28                 74
  CLUS_3               13                176
  CLUS_4                9                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q GAIN MUTATED       24     31     22      6      5     11      5
  16Q GAIN WILD-TYPE     49     64     70     73     66     68     17
D29V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED       10     12     12     14
  16Q GAIN WILD-TYPE     43     39     25     51
D29V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               10                 43
  CLUS_2               12                 39
  CLUS_3               12                 25
  CLUS_4               14                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        4     18     26
  16Q GAIN WILD-TYPE     12     54     92
D29V4, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                 12
  CLUS_2               18                 54
  CLUS_3               26                 92
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       34     32     35
  16Q GAIN WILD-TYPE    173    102    117
D29V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               34                173
  CLUS_2               32                102
  CLUS_3               35                117
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       29     41     31
  16Q GAIN WILD-TYPE    111    136    145
D29V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               29                111
  CLUS_2               41                136
  CLUS_3               31                145
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       25     42     36
  16Q GAIN WILD-TYPE    120    174    110
D29V7, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               25                120
  CLUS_2               42                174
  CLUS_3               36                110
D29V8, binary
                    cls
clus                   0   1
  16Q GAIN MUTATED    47  56
  16Q GAIN WILD-TYPE 143 261
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED     47   56
  16Q GAIN WILD-TYPE  143  261
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               47                143
  CLUS_2               56                261
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       34     26     40
  16Q GAIN WILD-TYPE    140    133     98
D29V9, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               34                140
  CLUS_2               26                133
  CLUS_3               40                 98
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       44     41     15
  16Q GAIN WILD-TYPE    123    189     59
D29V10, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               44                123
  CLUS_2               41                189
  CLUS_3               15                 59

Clustering(30) Variable = 17P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED       31     21      6      8
  17P GAIN WILD-TYPE    147     81    183     34
D30V1, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               31                147
  CLUS_2               21                 81
  CLUS_3                6                183
  CLUS_4                8                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P GAIN MUTATED       10     12     28      3      4      7      2
  17P GAIN WILD-TYPE     63     83     64     76     67     72     20
D30V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        7     10      5      7
  17P GAIN WILD-TYPE     46     41     32     58
D30V3, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                7                 46
  CLUS_2               10                 41
  CLUS_3                5                 32
  CLUS_4                7                 58
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        4     11     14
  17P GAIN WILD-TYPE     12     61    104
D30V4, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                4                 12
  CLUS_2               11                 61
  CLUS_3               14                104
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       33     20      9
  17P GAIN WILD-TYPE    174    114    143
D30V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               33                174
  CLUS_2               20                114
  CLUS_3                9                143
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       22     15     25
  17P GAIN WILD-TYPE    118    162    151
D30V6, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               22                118
  CLUS_2               15                162
  CLUS_3               25                151
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       11     32     21
  17P GAIN WILD-TYPE    134    184    125
D30V7, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               11                134
  CLUS_2               32                184
  CLUS_3               21                125
D30V8, binary
                    cls
clus                   0   1
  17P GAIN MUTATED    34  30
  17P GAIN WILD-TYPE 156 287
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED     34   30
  17P GAIN WILD-TYPE  156  287
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               34                156
  CLUS_2               30                287
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       20     17     23
  17P GAIN WILD-TYPE    154    142    115
D30V9, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               20                154
  CLUS_2               17                142
  CLUS_3               23                115
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       28     27      5
  17P GAIN WILD-TYPE    139    203     69
D30V10, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               28                139
  CLUS_2               27                203
  CLUS_3                5                 69

Clustering(31) Variable = 17Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED       36     26     12     10
  17Q GAIN WILD-TYPE    142     76    177     32
D31V1, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               36                142
  CLUS_2               26                 76
  CLUS_3               12                177
  CLUS_4               10                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q GAIN MUTATED       17     16     28      6      6      8      3
  17Q GAIN WILD-TYPE     56     79     64     73     65     71     19
D31V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        7     12      7     11
  17Q GAIN WILD-TYPE     46     39     30     54
D31V3, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                7                 46
  CLUS_2               12                 39
  CLUS_3                7                 30
  CLUS_4               11                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        4     11     22
  17Q GAIN WILD-TYPE     12     61     96
D31V4, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                 12
  CLUS_2               11                 61
  CLUS_3               22                 96
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       41     21     18
  17Q GAIN WILD-TYPE    166    113    134
D31V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               41                166
  CLUS_2               21                113
  CLUS_3               18                134
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       20     25     35
  17Q GAIN WILD-TYPE    120    152    141
D31V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               20                120
  CLUS_2               25                152
  CLUS_3               35                141
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       20     40     23
  17Q GAIN WILD-TYPE    125    176    123
D31V7, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               20                125
  CLUS_2               40                176
  CLUS_3               23                123
D31V8, binary
                    cls
clus                   0   1
  17Q GAIN MUTATED    35  48
  17Q GAIN WILD-TYPE 155 269
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     35   48
  17Q GAIN WILD-TYPE  155  269
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               35                155
  CLUS_2               48                269
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       29     25     23
  17Q GAIN WILD-TYPE    145    134    115
D31V9, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               29                145
  CLUS_2               25                134
  CLUS_3               23                115
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       30     36     11
  17Q GAIN WILD-TYPE    137    194     63
D31V10, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               30                137
  CLUS_2               36                194
  CLUS_3               11                 63

Clustering(32) Variable = 18P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED       56     43     14      6
  18P GAIN WILD-TYPE    122     59    175     36
D32V1, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               56                122
  CLUS_2               43                 59
  CLUS_3               14                175
  CLUS_4                6                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P GAIN MUTATED       31     24     28     18      7      7      4
  18P GAIN WILD-TYPE     42     71     64     61     64     72     18
D32V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED       12     17      7     13
  18P GAIN WILD-TYPE     41     34     30     52
D32V3, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               12                 41
  CLUS_2               17                 34
  CLUS_3                7                 30
  CLUS_4               13                 52
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        4     15     30
  18P GAIN WILD-TYPE     12     57     88
D32V4, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                4                 12
  CLUS_2               15                 57
  CLUS_3               30                 88
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       54     32     30
  18P GAIN WILD-TYPE    153    102    122
D32V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               54                153
  CLUS_2               32                102
  CLUS_3               30                122
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       32     27     57
  18P GAIN WILD-TYPE    108    150    119
D32V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               32                108
  CLUS_2               27                150
  CLUS_3               57                119
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       31     55     33
  18P GAIN WILD-TYPE    114    161    113
D32V7, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               31                114
  CLUS_2               55                161
  CLUS_3               33                113
D32V8, binary
                    cls
clus                   0   1
  18P GAIN MUTATED    44  75
  18P GAIN WILD-TYPE 146 242
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     44   75
  18P GAIN WILD-TYPE  146  242
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               44                146
  CLUS_2               75                242
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       37     38     33
  18P GAIN WILD-TYPE    137    121    105
D32V9, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               37                137
  CLUS_2               38                121
  CLUS_3               33                105
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       34     57     17
  18P GAIN WILD-TYPE    133    173     57
D32V10, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               34                133
  CLUS_2               57                173
  CLUS_3               17                 57

Clustering(33) Variable = 18Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED       10     20     14      4
  18Q GAIN WILD-TYPE    168     82    175     38
D33V1, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               10                168
  CLUS_2               20                 82
  CLUS_3               14                175
  CLUS_4                4                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q GAIN MUTATED        9      5     12     18      3      0      1
  18Q GAIN WILD-TYPE     64     90     80     61     68     79     21
D33V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        5     10      0      5
  18Q GAIN WILD-TYPE     48     41     37     60
D33V3, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                5                 48
  CLUS_2               10                 41
  CLUS_3                0                 37
  CLUS_4                5                 60
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        3      6     11
  18Q GAIN WILD-TYPE     13     66    107
D33V4, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                3                 13
  CLUS_2                6                 66
  CLUS_3               11                107
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       31     12      4
  18Q GAIN WILD-TYPE    176    122    148
D33V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               31                176
  CLUS_2               12                122
  CLUS_3                4                148
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       10      6     31
  18Q GAIN WILD-TYPE    130    171    145
D33V6, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               10                130
  CLUS_2                6                171
  CLUS_3               31                145
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        3     33     12
  18Q GAIN WILD-TYPE    142    183    134
D33V7, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                3                142
  CLUS_2               33                183
  CLUS_3               12                134
D33V8, binary
                    cls
clus                   0   1
  18Q GAIN MUTATED    14  34
  18Q GAIN WILD-TYPE 176 283
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED     14   34
  18Q GAIN WILD-TYPE  176  283
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               14                176
  CLUS_2               34                283
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        8     22     13
  18Q GAIN WILD-TYPE    166    137    125
D33V9, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                8                166
  CLUS_2               22                137
  CLUS_3               13                125
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       13     27      3
  18Q GAIN WILD-TYPE    154    203     71
D33V10, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               13                154
  CLUS_2               27                203
  CLUS_3                3                 71

Clustering(34) Variable = 19P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       19     19      9      6
  19P GAIN WILD-TYPE    159     83    180     36
D34V1, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               19                159
  CLUS_2               19                 83
  CLUS_3                9                180
  CLUS_4                6                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P GAIN MUTATED        6      4     21     17      3      1      1
  19P GAIN WILD-TYPE     67     91     71     62     68     78     21
D34V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED        3      7      5      2
  19P GAIN WILD-TYPE     50     44     32     63
D34V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                3                 50
  CLUS_2                7                 44
  CLUS_3                5                 32
  CLUS_4                2                 63
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        4      5      8
  19P GAIN WILD-TYPE     12     67    110
D34V4, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                4                 12
  CLUS_2                5                 67
  CLUS_3                8                110
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       30      9      9
  19P GAIN WILD-TYPE    177    125    143
D34V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               30                177
  CLUS_2                9                125
  CLUS_3                9                143
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        8     11     29
  19P GAIN WILD-TYPE    132    166    147
D34V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                8                132
  CLUS_2               11                166
  CLUS_3               29                147
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       10     36      7
  19P GAIN WILD-TYPE    135    180    139
D34V7, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               10                135
  CLUS_2               36                180
  CLUS_3                7                139
D34V8, binary
                    cls
clus                   0   1
  19P GAIN MUTATED    13  40
  19P GAIN WILD-TYPE 177 277
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED     13   40
  19P GAIN WILD-TYPE  177  277
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               13                177
  CLUS_2               40                277
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       17     21     13
  19P GAIN WILD-TYPE    157    138    125
D34V9, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               17                157
  CLUS_2               21                138
  CLUS_3               13                125
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       15     30      6
  19P GAIN WILD-TYPE    152    200     68
D34V10, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               15                152
  CLUS_2               30                200
  CLUS_3                6                 68

Clustering(35) Variable = 19Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       27     22     18      7
  19Q GAIN WILD-TYPE    151     80    171     35
D35V1, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               27                151
  CLUS_2               22                 80
  CLUS_3               18                171
  CLUS_4                7                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q GAIN MUTATED       11     10     23     20      5      2      3
  19Q GAIN WILD-TYPE     62     85     69     59     66     77     19
D35V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED        7      8      5      8
  19Q GAIN WILD-TYPE     46     43     32     57
D35V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                7                 46
  CLUS_2                8                 43
  CLUS_3                5                 32
  CLUS_4                8                 57
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        4      9     15
  19Q GAIN WILD-TYPE     12     63    103
D35V4, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                4                 12
  CLUS_2                9                 63
  CLUS_3               15                103
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       40     14     15
  19Q GAIN WILD-TYPE    167    120    137
D35V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               40                167
  CLUS_2               14                120
  CLUS_3               15                137
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       13     18     38
  19Q GAIN WILD-TYPE    127    159    138
D35V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               13                127
  CLUS_2               18                159
  CLUS_3               38                138
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       14     47     13
  19Q GAIN WILD-TYPE    131    169    133
D35V7, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               14                131
  CLUS_2               47                169
  CLUS_3               13                133
D35V8, binary
                    cls
clus                   0   1
  19Q GAIN MUTATED    21  53
  19Q GAIN WILD-TYPE 169 264
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     21   53
  19Q GAIN WILD-TYPE  169  264
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               21                169
  CLUS_2               53                264
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       26     26     19
  19Q GAIN WILD-TYPE    148    133    119
D35V9, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               26                148
  CLUS_2               26                133
  CLUS_3               19                119
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       20     41     10
  19Q GAIN WILD-TYPE    147    189     64
D35V10, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               20                147
  CLUS_2               41                189
  CLUS_3               10                 64

Clustering(36) Variable = 20P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       84     40     43     21
  20P GAIN WILD-TYPE     94     62    146     21
D36V1, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               84                 94
  CLUS_2               40                 62
  CLUS_3               43                146
  CLUS_4               21                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P GAIN MUTATED       24     57     40     19     15     25      8
  20P GAIN WILD-TYPE     49     38     52     60     56     54     14
D36V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       20     22     15     26
  20P GAIN WILD-TYPE     33     29     22     39
D36V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               20                 33
  CLUS_2               22                 29
  CLUS_3               15                 22
  CLUS_4               26                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       10     25     48
  20P GAIN WILD-TYPE      6     47     70
D36V4, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               10                  6
  CLUS_2               25                 47
  CLUS_3               48                 70
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       66     58     56
  20P GAIN WILD-TYPE    141     76     96
D36V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               66                141
  CLUS_2               58                 76
  CLUS_3               56                 96
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       60     65     55
  20P GAIN WILD-TYPE     80    112    121
D36V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               60                 80
  CLUS_2               65                112
  CLUS_3               55                121
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       50     75     63
  20P GAIN WILD-TYPE     95    141     83
D36V7, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               50                 95
  CLUS_2               75                141
  CLUS_3               63                 83
D36V8, binary
                    cls
clus                   0   1
  20P GAIN MUTATED    87 101
  20P GAIN WILD-TYPE 103 216
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     87  101
  20P GAIN WILD-TYPE  103  216
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               87                103
  CLUS_2              101                216
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       70     44     57
  20P GAIN WILD-TYPE    104    115     81
D36V9, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               70                104
  CLUS_2               44                115
  CLUS_3               57                 81
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       73     70     28
  20P GAIN WILD-TYPE     94    160     46
D36V10, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               73                 94
  CLUS_2               70                160
  CLUS_3               28                 46

Clustering(37) Variable = 20Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       93     43     41     21
  20Q GAIN WILD-TYPE     85     59    148     21
D37V1, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               93                 85
  CLUS_2               43                 59
  CLUS_3               41                148
  CLUS_4               21                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q GAIN MUTATED       33     56     41     15     18     25     10
  20Q GAIN WILD-TYPE     40     39     51     64     53     54     12
D37V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       22     21     17     24
  20Q GAIN WILD-TYPE     31     30     20     41
D37V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               22                 31
  CLUS_2               21                 30
  CLUS_3               17                 20
  CLUS_4               24                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        6     28     50
  20Q GAIN WILD-TYPE     10     44     68
D37V4, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                6                 10
  CLUS_2               28                 44
  CLUS_3               50                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       73     62     56
  20Q GAIN WILD-TYPE    134     72     96
D37V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               73                134
  CLUS_2               62                 72
  CLUS_3               56                 96
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       61     70     60
  20Q GAIN WILD-TYPE     79    107    116
D37V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               61                 79
  CLUS_2               70                107
  CLUS_3               60                116
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       57     75     65
  20Q GAIN WILD-TYPE     88    141     81
D37V7, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               57                 88
  CLUS_2               75                141
  CLUS_3               65                 81
D37V8, binary
                    cls
clus                   0   1
  20Q GAIN MUTATED    89 108
  20Q GAIN WILD-TYPE 101 209
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     89  108
  20Q GAIN WILD-TYPE  101  209
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               89                101
  CLUS_2              108                209
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       76     44     61
  20Q GAIN WILD-TYPE     98    115     77
D37V9, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               76                 98
  CLUS_2               44                115
  CLUS_3               61                 77
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       78     73     30
  20Q GAIN WILD-TYPE     89    157     44
D37V10, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               78                 89
  CLUS_2               73                157
  CLUS_3               30                 44

Clustering(38) Variable = 21Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED       15     11      6      3
  21Q GAIN WILD-TYPE    163     91    183     39
D38V1, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               15                163
  CLUS_2               11                 91
  CLUS_3                6                183
  CLUS_4                3                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q GAIN MUTATED       10      2     10      7      1      4      1
  21Q GAIN WILD-TYPE     63     93     82     72     70     75     21
D38V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        3     10      2      2
  21Q GAIN WILD-TYPE     50     41     35     63
D38V3, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                3                 50
  CLUS_2               10                 41
  CLUS_3                2                 35
  CLUS_4                2                 63
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        2      6      9
  21Q GAIN WILD-TYPE     14     66    109
D38V4, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                2                 14
  CLUS_2                6                 66
  CLUS_3                9                109
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       23      8      4
  21Q GAIN WILD-TYPE    184    126    148
D38V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               23                184
  CLUS_2                8                126
  CLUS_3                4                148
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        8      6     21
  21Q GAIN WILD-TYPE    132    171    155
D38V6, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                8                132
  CLUS_2                6                171
  CLUS_3               21                155
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        6     21      8
  21Q GAIN WILD-TYPE    139    195    138
D38V7, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                6                139
  CLUS_2               21                195
  CLUS_3                8                138
D38V8, binary
                    cls
clus                   0   1
  21Q GAIN MUTATED    11  24
  21Q GAIN WILD-TYPE 179 293
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED     11   24
  21Q GAIN WILD-TYPE  179  293
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               11                179
  CLUS_2               24                293
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        9     11     10
  21Q GAIN WILD-TYPE    165    148    128
D38V9, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                9                165
  CLUS_2               11                148
  CLUS_3               10                128
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       11     13      6
  21Q GAIN WILD-TYPE    156    217     68
D38V10, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               11                156
  CLUS_2               13                217
  CLUS_3                6                 68

Clustering(39) Variable = 22Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED       48     35     19      8
  22Q GAIN WILD-TYPE    130     67    170     34
D39V1, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               48                130
  CLUS_2               35                 67
  CLUS_3               19                170
  CLUS_4                8                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q GAIN MUTATED       18     24     45      5      1     14      3
  22Q GAIN WILD-TYPE     55     71     47     74     70     65     19
D39V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        9     18      7     15
  22Q GAIN WILD-TYPE     44     33     30     50
D39V3, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                9                 44
  CLUS_2               18                 33
  CLUS_3                7                 30
  CLUS_4               15                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        2     15     32
  22Q GAIN WILD-TYPE     14     57     86
D39V4, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                2                 14
  CLUS_2               15                 57
  CLUS_3               32                 86
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       51     31     27
  22Q GAIN WILD-TYPE    156    103    125
D39V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               51                156
  CLUS_2               31                103
  CLUS_3               27                125
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       32     35     42
  22Q GAIN WILD-TYPE    108    142    134
D39V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               32                108
  CLUS_2               35                142
  CLUS_3               42                134
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       17     59     34
  22Q GAIN WILD-TYPE    128    157    112
D39V7, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               17                128
  CLUS_2               59                157
  CLUS_3               34                112
D39V8, binary
                    cls
clus                   0   1
  22Q GAIN MUTATED    44  66
  22Q GAIN WILD-TYPE 146 251
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED     44   66
  22Q GAIN WILD-TYPE  146  251
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               44                146
  CLUS_2               66                251
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       27     33     44
  22Q GAIN WILD-TYPE    147    126     94
D39V9, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               27                147
  CLUS_2               33                126
  CLUS_3               44                 94
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       40     49     15
  22Q GAIN WILD-TYPE    127    181     59
D39V10, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               40                127
  CLUS_2               49                181
  CLUS_3               15                 59

Clustering(40) Variable = XQ GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED       50     14     14      9
  XQ GAIN WILD-TYPE    128     88    175     33
D40V1, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              50               128
  CLUS_2              14                88
  CLUS_3              14               175
  CLUS_4               9                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ GAIN MUTATED       13     27     21      9      8      6      3
  XQ GAIN WILD-TYPE     60     68     71     70     63     73     19
D40V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        8      6     10     14
  XQ GAIN WILD-TYPE     45     45     27     51
D40V3, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               8                45
  CLUS_2               6                45
  CLUS_3              10                27
  CLUS_4              14                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        2     12     24
  XQ GAIN WILD-TYPE     14     60     94
D40V4, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2                14
  CLUS_2              12                60
  CLUS_3              24                94
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       32     28     25
  XQ GAIN WILD-TYPE    175    106    127
D40V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              32               175
  CLUS_2              28               106
  CLUS_3              25               127
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       29     29     27
  XQ GAIN WILD-TYPE    111    148    149
D40V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              29               111
  CLUS_2              29               148
  CLUS_3              27               149
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       18     34     33
  XQ GAIN WILD-TYPE    127    182    113
D40V7, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              18               127
  CLUS_2              34               182
  CLUS_3              33               113
D40V8, binary
                   cls
clus                  0   1
  XQ GAIN MUTATED    37  48
  XQ GAIN WILD-TYPE 153 269
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED     37   48
  XQ GAIN WILD-TYPE  153  269
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              37               153
  CLUS_2              48               269
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       27     24     26
  XQ GAIN WILD-TYPE    147    135    112
D40V9, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              27               147
  CLUS_2              24               135
  CLUS_3              26               112
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       30     32     15
  XQ GAIN WILD-TYPE    137    198     59
D40V10, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              30               137
  CLUS_2              32               198
  CLUS_3              15                59

Clustering(41) Variable = 1P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED       20     20      7      5
  1P LOSS WILD-TYPE    158     82    182     37
D41V1, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              20               158
  CLUS_2              20                82
  CLUS_3               7               182
  CLUS_4               5                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P LOSS MUTATED        5      8     27      2      5      3      2
  1P LOSS WILD-TYPE     68     87     65     77     66     76     20
D41V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        5     14      4      5
  1P LOSS WILD-TYPE     48     37     33     60
D41V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               5                48
  CLUS_2              14                37
  CLUS_3               4                33
  CLUS_4               5                60
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        3     11     14
  1P LOSS WILD-TYPE     13     61    104
D41V4, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               3                13
  CLUS_2              11                61
  CLUS_3              14               104
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       26     19      6
  1P LOSS WILD-TYPE    181    115    146
D41V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              26               181
  CLUS_2              19               115
  CLUS_3               6               146
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       22      9     20
  1P LOSS WILD-TYPE    118    168    156
D41V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              22               118
  CLUS_2               9               168
  CLUS_3              20               156
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       10     25     15
  1P LOSS WILD-TYPE    135    191    131
D41V7, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              10               135
  CLUS_2              25               191
  CLUS_3              15               131
D41V8, binary
                   cls
clus                  0   1
  1P LOSS MUTATED    21  29
  1P LOSS WILD-TYPE 169 288
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED     21   29
  1P LOSS WILD-TYPE  169  288
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              21               169
  CLUS_2              29               288
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       12     19     16
  1P LOSS WILD-TYPE    162    140    122
D41V9, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              12               162
  CLUS_2              19               140
  CLUS_3              16               122
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       18     25      4
  1P LOSS WILD-TYPE    149    205     70
D41V10, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              18               149
  CLUS_2              25               205
  CLUS_3               4                70

Clustering(42) Variable = 1Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED       16      9      6      4
  1Q LOSS WILD-TYPE    162     93    183     38
D42V1, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              16               162
  CLUS_2               9                93
  CLUS_3               6               183
  CLUS_4               4                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q LOSS MUTATED        5     11      7      1      5      3      3
  1Q LOSS WILD-TYPE     68     84     85     78     66     76     19
D42V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        4      6      2      6
  1Q LOSS WILD-TYPE     49     45     35     59
D42V3, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               4                49
  CLUS_2               6                45
  CLUS_3               2                35
  CLUS_4               6                59
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        1      8      9
  1Q LOSS WILD-TYPE     15     64    109
D42V4, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               1                15
  CLUS_2               8                64
  CLUS_3               9               109
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        9     14     11
  1Q LOSS WILD-TYPE    198    120    141
D42V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               9               198
  CLUS_2              14               120
  CLUS_3              11               141
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       14     11      9
  1Q LOSS WILD-TYPE    126    166    167
D42V6, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              14               126
  CLUS_2              11               166
  CLUS_3               9               167
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       15      8     11
  1Q LOSS WILD-TYPE    130    208    135
D42V7, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              15               130
  CLUS_2               8               208
  CLUS_3              11               135
D42V8, binary
                   cls
clus                  0   1
  1Q LOSS MUTATED    19  15
  1Q LOSS WILD-TYPE 171 302
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED     19   15
  1Q LOSS WILD-TYPE  171  302
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              19               171
  CLUS_2              15               302
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       18      6      8
  1Q LOSS WILD-TYPE    156    153    130
D42V9, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              18               156
  CLUS_2               6               153
  CLUS_3               8               130
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       12     13      7
  1Q LOSS WILD-TYPE    155    217     67
D42V10, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              12               155
  CLUS_2              13               217
  CLUS_3               7                67

Clustering(43) Variable = 2P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED       17      5      7      4
  2P LOSS WILD-TYPE    161     97    182     38
D43V1, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              17               161
  CLUS_2               5                97
  CLUS_3               7               182
  CLUS_4               4                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2P LOSS MUTATED        2     15      5      5      4      1      1
  2P LOSS WILD-TYPE     71     80     87     74     67     78     21
D43V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        2      1      5      4
  2P LOSS WILD-TYPE     51     50     32     61
D43V3, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2                51
  CLUS_2               1                50
  CLUS_3               5                32
  CLUS_4               4                61
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        1      7      4
  2P LOSS WILD-TYPE     15     65    114
D43V4, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               1                15
  CLUS_2               7                65
  CLUS_3               4               114
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED       10      6     15
  2P LOSS WILD-TYPE    197    128    137
D43V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              10               197
  CLUS_2               6               128
  CLUS_3              15               137
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        5     18      8
  2P LOSS WILD-TYPE    135    159    168
D43V6, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5               135
  CLUS_2              18               159
  CLUS_3               8               168
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED       16      9      8
  2P LOSS WILD-TYPE    129    207    138
D43V7, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              16               129
  CLUS_2               9               207
  CLUS_3               8               138
D43V8, binary
                   cls
clus                  0   1
  2P LOSS MUTATED    12  21
  2P LOSS WILD-TYPE 178 296
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED     12   21
  2P LOSS WILD-TYPE  178  296
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              12               178
  CLUS_2              21               296
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED       18     12      3
  2P LOSS WILD-TYPE    156    147    135
D43V9, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              18               156
  CLUS_2              12               147
  CLUS_3               3               135
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED       12     15      6
  2P LOSS WILD-TYPE    155    215     68
D43V10, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              12               155
  CLUS_2              15               215
  CLUS_3               6                68

Clustering(44) Variable = 2Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED       15      9     14      4
  2Q LOSS WILD-TYPE    163     93    175     38
D44V1, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              15               163
  CLUS_2               9                93
  CLUS_3              14               175
  CLUS_4               4                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2Q LOSS MUTATED        3     13      5     10      8      3      0
  2Q LOSS WILD-TYPE     70     82     87     69     63     76     22
D44V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        3      5      2      5
  2Q LOSS WILD-TYPE     50     46     35     60
D44V3, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               3                50
  CLUS_2               5                46
  CLUS_3               2                35
  CLUS_4               5                60
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        3      5      7
  2Q LOSS WILD-TYPE     13     67    111
D44V4, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               3                13
  CLUS_2               5                67
  CLUS_3               7               111
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED       19      9     12
  2Q LOSS WILD-TYPE    188    125    140
D44V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              19               188
  CLUS_2               9               125
  CLUS_3              12               140
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        9     16     15
  2Q LOSS WILD-TYPE    131    161    161
D44V6, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               9               131
  CLUS_2              16               161
  CLUS_3              15               161
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED       17     16      9
  2Q LOSS WILD-TYPE    128    200    137
D44V7, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              17               128
  CLUS_2              16               200
  CLUS_3               9               137
D44V8, binary
                   cls
clus                  0   1
  2Q LOSS MUTATED    16  26
  2Q LOSS WILD-TYPE 174 291
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED     16   26
  2Q LOSS WILD-TYPE  174  291
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              16               174
  CLUS_2              26               291
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED       19     17      5
  2Q LOSS WILD-TYPE    155    142    133
D44V9, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              19               155
  CLUS_2              17               142
  CLUS_3               5               133
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED       14     23      4
  2Q LOSS WILD-TYPE    153    207     70
D44V10, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              14               153
  CLUS_2              23               207
  CLUS_3               4                70

Clustering(45) Variable = 3P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED      142     70     49     26
  3P LOSS WILD-TYPE     36     32    140     16
D45V1, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1             142                36
  CLUS_2              70                32
  CLUS_3              49               140
  CLUS_4              26                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P LOSS MUTATED       54     75     69     16     24     33     16
  3P LOSS WILD-TYPE     19     20     23     63     47     46      6
D45V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED       34     30     22     43
  3P LOSS WILD-TYPE     19     21     15     22
D45V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              34                19
  CLUS_2              30                21
  CLUS_3              22                15
  CLUS_4              43                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        7     42     80
  3P LOSS WILD-TYPE      9     30     38
D45V4, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               7                 9
  CLUS_2              42                30
  CLUS_3              80                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED      104     89     85
  3P LOSS WILD-TYPE    103     45     67
D45V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1             104               103
  CLUS_2              89                45
  CLUS_3              85                67
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       93     97     88
  3P LOSS WILD-TYPE     47     80     88
D45V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              93                47
  CLUS_2              97                80
  CLUS_3              88                88
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       74    119     91
  3P LOSS WILD-TYPE     71     97     55
D45V7, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              74                71
  CLUS_2             119                97
  CLUS_3              91                55
D45V8, binary
                   cls
clus                  0   1
  3P LOSS MUTATED   120 164
  3P LOSS WILD-TYPE  70 153
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED    120  164
  3P LOSS WILD-TYPE   70  153
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1             120                70
  CLUS_2             164               153
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       97     86     81
  3P LOSS WILD-TYPE     77     73     57
D45V9, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              97                77
  CLUS_2              86                73
  CLUS_3              81                57
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED      100    125     39
  3P LOSS WILD-TYPE     67    105     35
D45V10, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1             100                67
  CLUS_2             125               105
  CLUS_3              39                35

Clustering(46) Variable = 3Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED       30     12     12      6
  3Q LOSS WILD-TYPE    148     90    177     36
D46V1, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              30               148
  CLUS_2              12                90
  CLUS_3              12               177
  CLUS_4               6                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q LOSS MUTATED       10     15     12      5     11      7      0
  3Q LOSS WILD-TYPE     63     80     80     74     60     72     22
D46V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED       10      9      5      5
  3Q LOSS WILD-TYPE     43     42     32     60
D46V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              10                43
  CLUS_2               9                42
  CLUS_3               5                32
  CLUS_4               5                60
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        3     10     16
  3Q LOSS WILD-TYPE     13     62    102
D46V4, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3                13
  CLUS_2              10                62
  CLUS_3              16               102
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       21     18     19
  3Q LOSS WILD-TYPE    186    116    133
D46V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              21               186
  CLUS_2              18               116
  CLUS_3              19               133
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       18     21     19
  3Q LOSS WILD-TYPE    122    156    157
D46V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              18               122
  CLUS_2              21               156
  CLUS_3              19               157
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       16     25     18
  3Q LOSS WILD-TYPE    129    191    128
D46V7, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              16               129
  CLUS_2              25               191
  CLUS_3              18               128
D46V8, binary
                   cls
clus                  0   1
  3Q LOSS MUTATED    22  37
  3Q LOSS WILD-TYPE 168 280
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED     22   37
  3Q LOSS WILD-TYPE  168  280
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              22               168
  CLUS_2              37               280
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       19     23     14
  3Q LOSS WILD-TYPE    155    136    124
D46V9, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              19               155
  CLUS_2              23               136
  CLUS_3              14               124
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       20     29      7
  3Q LOSS WILD-TYPE    147    201     67
D46V10, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              20               147
  CLUS_2              29               201
  CLUS_3               7                67

Clustering(47) Variable = 4P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED       79     68     26     13
  4P LOSS WILD-TYPE     99     34    163     29
D47V1, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              79                99
  CLUS_2              68                34
  CLUS_3              26               163
  CLUS_4              13                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P LOSS MUTATED       37     26     63     22     12     16     10
  4P LOSS WILD-TYPE     36     69     29     57     59     63     12
D47V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED       24     28     11     21
  4P LOSS WILD-TYPE     29     23     26     44
D47V3, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              24                29
  CLUS_2              28                23
  CLUS_3              11                26
  CLUS_4              21                44
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        5     32     47
  4P LOSS WILD-TYPE     11     40     71
D47V4, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               5                11
  CLUS_2              32                40
  CLUS_3              47                71
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       90     55     36
  4P LOSS WILD-TYPE    117     79    116
D47V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              90               117
  CLUS_2              55                79
  CLUS_3              36               116
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       58     43     80
  4P LOSS WILD-TYPE     82    134     96
D47V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              58                82
  CLUS_2              43               134
  CLUS_3              80                96
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       52     85     47
  4P LOSS WILD-TYPE     93    131     99
D47V7, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              52                93
  CLUS_2              85               131
  CLUS_3              47                99
D47V8, binary
                   cls
clus                  0   1
  4P LOSS MUTATED    72 112
  4P LOSS WILD-TYPE 118 205
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     72  112
  4P LOSS WILD-TYPE  118  205
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              72               118
  CLUS_2             112               205
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       48     64     54
  4P LOSS WILD-TYPE    126     95     84
D47V9, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              48               126
  CLUS_2              64                95
  CLUS_3              54                84
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       61     89     16
  4P LOSS WILD-TYPE    106    141     58
D47V10, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              61               106
  CLUS_2              89               141
  CLUS_3              16                58

Clustering(48) Variable = 4Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       58     53     21     12
  4Q LOSS WILD-TYPE    120     49    168     30
D48V1, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              58               120
  CLUS_2              53                49
  CLUS_3              21               168
  CLUS_4              12                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4Q LOSS MUTATED       29     27     45     15     12     12      4
  4Q LOSS WILD-TYPE     44     68     47     64     59     67     18
D48V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       18     21     11     18
  4Q LOSS WILD-TYPE     35     30     26     47
D48V3, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              18                35
  CLUS_2              21                30
  CLUS_3              11                26
  CLUS_4              18                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        3     26     39
  4Q LOSS WILD-TYPE     13     46     79
D48V4, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               3                13
  CLUS_2              26                46
  CLUS_3              39                79
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       67     41     28
  4Q LOSS WILD-TYPE    140     93    124
D48V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              67               140
  CLUS_2              41                93
  CLUS_3              28               124
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       45     33     58
  4Q LOSS WILD-TYPE     95    144    118
D48V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              45                95
  CLUS_2              33               144
  CLUS_3              58               118
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       33     66     43
  4Q LOSS WILD-TYPE    112    150    103
D48V7, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              33               112
  CLUS_2              66               150
  CLUS_3              43               103
D48V8, binary
                   cls
clus                  0   1
  4Q LOSS MUTATED    60  82
  4Q LOSS WILD-TYPE 130 235
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     60   82
  4Q LOSS WILD-TYPE  130  235
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              60               130
  CLUS_2              82               235
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       39     51     44
  4Q LOSS WILD-TYPE    135    108     94
D48V9, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              39               135
  CLUS_2              51               108
  CLUS_3              44                94
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       52     70     12
  4Q LOSS WILD-TYPE    115    160     62
D48V10, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              52               115
  CLUS_2              70               160
  CLUS_3              12                62

Clustering(49) Variable = 5P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED       24     15      4      7
  5P LOSS WILD-TYPE    154     87    185     35
D49V1, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              24               154
  CLUS_2              15                87
  CLUS_3               4               185
  CLUS_4               7                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P LOSS MUTATED       13     15     16      2      2      1      1
  5P LOSS WILD-TYPE     60     80     76     77     69     78     21
D49V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        4      9      4      6
  5P LOSS WILD-TYPE     49     42     33     59
D49V3, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               4                49
  CLUS_2               9                42
  CLUS_3               4                33
  CLUS_4               6                59
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        1     11     11
  5P LOSS WILD-TYPE     15     61    107
D49V4, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                15
  CLUS_2              11                61
  CLUS_3              11               107
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       23     12     13
  5P LOSS WILD-TYPE    184    122    139
D49V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              23               184
  CLUS_2              12               122
  CLUS_3              13               139
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       15     14     19
  5P LOSS WILD-TYPE    125    163    157
D49V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              15               125
  CLUS_2              14               163
  CLUS_3              19               157
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       12     23     15
  5P LOSS WILD-TYPE    133    193    131
D49V7, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              12               133
  CLUS_2              23               193
  CLUS_3              15               131
D49V8, binary
                   cls
clus                  0   1
  5P LOSS MUTATED    23  27
  5P LOSS WILD-TYPE 167 290
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED     23   27
  5P LOSS WILD-TYPE  167  290
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              23               167
  CLUS_2              27               290
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       19     10     18
  5P LOSS WILD-TYPE    155    149    120
D49V9, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              19               155
  CLUS_2              10               149
  CLUS_3              18               120
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       20     19      8
  5P LOSS WILD-TYPE    147    211     66
D49V10, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              20               147
  CLUS_2              19               211
  CLUS_3               8                66

Clustering(50) Variable = 5Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED       79     56     15     10
  5Q LOSS WILD-TYPE     99     46    174     32
D50V1, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              79                99
  CLUS_2              56                46
  CLUS_3              15               174
  CLUS_4              10                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q LOSS MUTATED       41     40     46      8      3     14      8
  5Q LOSS WILD-TYPE     32     55     46     71     68     65     14
D50V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED       15     22      9     23
  5Q LOSS WILD-TYPE     38     29     28     42
D50V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              15                38
  CLUS_2              22                29
  CLUS_3               9                28
  CLUS_4              23                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        2     23     44
  5Q LOSS WILD-TYPE     14     49     74
D50V4, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               2                14
  CLUS_2              23                49
  CLUS_3              44                74
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       72     45     40
  5Q LOSS WILD-TYPE    135     89    112
D50V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              72               135
  CLUS_2              45                89
  CLUS_3              40               112
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       49     39     69
  5Q LOSS WILD-TYPE     91    138    107
D50V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              49                91
  CLUS_2              39               138
  CLUS_3              69               107
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       42     69     47
  5Q LOSS WILD-TYPE    103    147     99
D50V7, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              42               103
  CLUS_2              69               147
  CLUS_3              47                99
D50V8, binary
                   cls
clus                  0   1
  5Q LOSS MUTATED    68  90
  5Q LOSS WILD-TYPE 122 227
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     68   90
  5Q LOSS WILD-TYPE  122  227
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              68               122
  CLUS_2              90               227
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       54     46     46
  5Q LOSS WILD-TYPE    120    113     92
D50V9, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              54               120
  CLUS_2              46               113
  CLUS_3              46                92
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       56     69     21
  5Q LOSS WILD-TYPE    111    161     53
D50V10, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              56               111
  CLUS_2              69               161
  CLUS_3              21                53

Clustering(51) Variable = 6P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED       28     23     11      5
  6P LOSS WILD-TYPE    150     79    178     37
D51V1, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              28               150
  CLUS_2              23                79
  CLUS_3              11               178
  CLUS_4               5                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P LOSS MUTATED        9     13     23     11      4      4      3
  6P LOSS WILD-TYPE     64     82     69     68     67     75     19
D51V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED       12     11      1      9
  6P LOSS WILD-TYPE     41     40     36     56
D51V3, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              12                41
  CLUS_2              11                40
  CLUS_3               1                36
  CLUS_4               9                56
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        4     11     18
  6P LOSS WILD-TYPE     12     61    100
D51V4, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               4                12
  CLUS_2              11                61
  CLUS_3              18               100
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       34     18     11
  6P LOSS WILD-TYPE    173    116    141
D51V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              34               173
  CLUS_2              18               116
  CLUS_3              11               141
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       16     16     31
  6P LOSS WILD-TYPE    124    161    145
D51V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              16               124
  CLUS_2              16               161
  CLUS_3              31               145
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       15     34     18
  6P LOSS WILD-TYPE    130    182    128
D51V7, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              15               130
  CLUS_2              34               182
  CLUS_3              18               128
D51V8, binary
                   cls
clus                  0   1
  6P LOSS MUTATED    22  45
  6P LOSS WILD-TYPE 168 272
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED     22   45
  6P LOSS WILD-TYPE  168  272
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              22               168
  CLUS_2              45               272
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       19     26     15
  6P LOSS WILD-TYPE    155    133    123
D51V9, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              19               155
  CLUS_2              26               133
  CLUS_3              15               123
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       18     34      8
  6P LOSS WILD-TYPE    149    196     66
D51V10, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              18               149
  CLUS_2              34               196
  CLUS_3               8                66

Clustering(52) Variable = 6Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED       23     20     17      7
  6Q LOSS WILD-TYPE    155     82    172     35
D52V1, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              23               155
  CLUS_2              20                82
  CLUS_3              17               172
  CLUS_4               7                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q LOSS MUTATED       12      9     16     15      6      3      6
  6Q LOSS WILD-TYPE     61     86     76     64     65     76     16
D52V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        9     12      2      9
  6Q LOSS WILD-TYPE     44     39     35     56
D52V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               9                44
  CLUS_2              12                39
  CLUS_3               2                35
  CLUS_4               9                56
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        3      8     21
  6Q LOSS WILD-TYPE     13     64     97
D52V4, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               3                13
  CLUS_2               8                64
  CLUS_3              21                97
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       28     18     17
  6Q LOSS WILD-TYPE    179    116    135
D52V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              28               179
  CLUS_2              18               116
  CLUS_3              17               135
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       17     17     29
  6Q LOSS WILD-TYPE    123    160    147
D52V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              17               123
  CLUS_2              17               160
  CLUS_3              29               147
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       16     31     19
  6Q LOSS WILD-TYPE    129    185    127
D52V7, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              16               129
  CLUS_2              31               185
  CLUS_3              19               127
D52V8, binary
                   cls
clus                  0   1
  6Q LOSS MUTATED    22  44
  6Q LOSS WILD-TYPE 168 273
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     22   44
  6Q LOSS WILD-TYPE  168  273
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              22               168
  CLUS_2              44               273
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       18     25     17
  6Q LOSS WILD-TYPE    156    134    121
D52V9, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              18               156
  CLUS_2              25               134
  CLUS_3              17               121
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       18     32     10
  6Q LOSS WILD-TYPE    149    198     64
D52V10, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              18               149
  CLUS_2              32               198
  CLUS_3              10                64

Clustering(53) Variable = 7P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        7     10      6      5
  7P LOSS WILD-TYPE    171     92    183     37
D53V1, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               7               171
  CLUS_2              10                92
  CLUS_3               6               183
  CLUS_4               5                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7P LOSS MUTATED        5      5      7      9      0      2      0
  7P LOSS WILD-TYPE     68     90     85     70     71     77     22
D53V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        0      6      2      1
  7P LOSS WILD-TYPE     53     45     35     64
D53V3, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               0                53
  CLUS_2               6                45
  CLUS_3               2                35
  CLUS_4               1                64
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        2      2      5
  7P LOSS WILD-TYPE     14     70    113
D53V4, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2                14
  CLUS_2               2                70
  CLUS_3               5               113
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED       14      5      7
  7P LOSS WILD-TYPE    193    129    145
D53V5, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              14               193
  CLUS_2               5               129
  CLUS_3               7               145
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        5      7     14
  7P LOSS WILD-TYPE    135    170    162
D53V6, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               5               135
  CLUS_2               7               170
  CLUS_3              14               162
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED       11     12      5
  7P LOSS WILD-TYPE    134    204    141
D53V7, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              11               134
  CLUS_2              12               204
  CLUS_3               5               141
D53V8, binary
                   cls
clus                  0   1
  7P LOSS MUTATED    11  17
  7P LOSS WILD-TYPE 179 300
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED     11   17
  7P LOSS WILD-TYPE  179  300
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              11               179
  CLUS_2              17               300
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED       13     11      3
  7P LOSS WILD-TYPE    161    148    135
D53V9, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              13               161
  CLUS_2              11               148
  CLUS_3               3               135
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        9     15      3
  7P LOSS WILD-TYPE    158    215     71
D53V10, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               9               158
  CLUS_2              15               215
  CLUS_3               3                71

Clustering(54) Variable = 7Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED       14     11     11      6
  7Q LOSS WILD-TYPE    164     91    178     36
D54V1, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              14               164
  CLUS_2              11                91
  CLUS_3              11               178
  CLUS_4               6                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q LOSS MUTATED       10      9      5      8      3      6      1
  7Q LOSS WILD-TYPE     63     86     87     71     68     73     21
D54V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        4      7      4      4
  7Q LOSS WILD-TYPE     49     44     33     61
D54V3, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               4                49
  CLUS_2               7                44
  CLUS_3               4                33
  CLUS_4               4                61
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        3      7      9
  7Q LOSS WILD-TYPE     13     65    109
D54V4, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               3                13
  CLUS_2               7                65
  CLUS_3               9               109
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED       15      9     17
  7Q LOSS WILD-TYPE    192    125    135
D54V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              15               192
  CLUS_2               9               125
  CLUS_3              17               135
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED       10     14     17
  7Q LOSS WILD-TYPE    130    163    159
D54V6, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              10               130
  CLUS_2              14               163
  CLUS_3              17               159
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED       18     11     13
  7Q LOSS WILD-TYPE    127    205    133
D54V7, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              18               127
  CLUS_2              11               205
  CLUS_3              13               133
D54V8, binary
                   cls
clus                  0   1
  7Q LOSS MUTATED    18  24
  7Q LOSS WILD-TYPE 172 293
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED     18   24
  7Q LOSS WILD-TYPE  172  293
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              18               172
  CLUS_2              24               293
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED       13     10     11
  7Q LOSS WILD-TYPE    161    149    127
D54V9, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              13               161
  CLUS_2              10               149
  CLUS_3              11               127
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED       13     15      6
  7Q LOSS WILD-TYPE    154    215     68
D54V10, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              13               154
  CLUS_2              15               215
  CLUS_3               6                68

Clustering(55) Variable = 8P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED      100     27     42     15
  8P LOSS WILD-TYPE     78     75    147     27
D55V1, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1             100                78
  CLUS_2              27                75
  CLUS_3              42               147
  CLUS_4              15                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P LOSS MUTATED       23     53     39     11     21     30      7
  8P LOSS WILD-TYPE     50     42     53     68     50     49     15
D55V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED       22     17     11     27
  8P LOSS WILD-TYPE     31     34     26     38
D55V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              22                31
  CLUS_2              17                34
  CLUS_3              11                26
  CLUS_4              27                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        3     29     45
  8P LOSS WILD-TYPE     13     43     73
D55V4, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               3                13
  CLUS_2              29                43
  CLUS_3              45                73
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       63     59     57
  8P LOSS WILD-TYPE    144     75     95
D55V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              63               144
  CLUS_2              59                75
  CLUS_3              57                95
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       64     69     46
  8P LOSS WILD-TYPE     76    108    130
D55V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              64                76
  CLUS_2              69               108
  CLUS_3              46               130
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       60     64     59
  8P LOSS WILD-TYPE     85    152     87
D55V7, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              60                85
  CLUS_2              64               152
  CLUS_3              59                87
D55V8, binary
                   cls
clus                  0   1
  8P LOSS MUTATED    87  96
  8P LOSS WILD-TYPE 103 221
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     87   96
  8P LOSS WILD-TYPE  103  221
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              87               103
  CLUS_2              96               221
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       66     41     64
  8P LOSS WILD-TYPE    108    118     74
D55V9, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              66               108
  CLUS_2              41               118
  CLUS_3              64                74
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       74     64     33
  8P LOSS WILD-TYPE     93    166     41
D55V10, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              74                93
  CLUS_2              64               166
  CLUS_3              33                41

Clustering(56) Variable = 8Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED       15      7      5      3
  8Q LOSS WILD-TYPE    163     95    184     39
D56V1, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              15               163
  CLUS_2               7                95
  CLUS_3               5               184
  CLUS_4               3                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q LOSS MUTATED        8      5      7      3      2      2      3
  8Q LOSS WILD-TYPE     65     90     85     76     69     77     19
D56V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        3      4      1      5
  8Q LOSS WILD-TYPE     50     47     36     60
D56V3, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               3                50
  CLUS_2               4                47
  CLUS_3               1                36
  CLUS_4               5                60
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        2      3      8
  8Q LOSS WILD-TYPE     14     69    110
D56V4, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               2                14
  CLUS_2               3                69
  CLUS_3               8               110
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       11      7     11
  8Q LOSS WILD-TYPE    196    127    141
D56V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              11               196
  CLUS_2               7               127
  CLUS_3              11               141
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        7     12     10
  8Q LOSS WILD-TYPE    133    165    166
D56V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               7               133
  CLUS_2              12               165
  CLUS_3              10               166
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       12     13      5
  8Q LOSS WILD-TYPE    133    203    141
D56V7, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              12               133
  CLUS_2              13               203
  CLUS_3               5               141
D56V8, binary
                   cls
clus                  0   1
  8Q LOSS MUTATED    11  19
  8Q LOSS WILD-TYPE 179 298
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED     11   19
  8Q LOSS WILD-TYPE  179  298
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              11               179
  CLUS_2              19               298
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       11      9      6
  8Q LOSS WILD-TYPE    163    150    132
D56V9, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              11               163
  CLUS_2               9               150
  CLUS_3               6               132
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        8     11      7
  8Q LOSS WILD-TYPE    159    219     67
D56V10, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               8               159
  CLUS_2              11               219
  CLUS_3               7                67

Clustering(57) Variable = 9P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       99     53     23      1
  9P LOSS WILD-TYPE     79     49    166     41
D57V1, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              99                79
  CLUS_2              53                49
  CLUS_3              23               166
  CLUS_4               1                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P LOSS MUTATED       45     38     51      9      7     16     10
  9P LOSS WILD-TYPE     28     57     41     70     64     63     12
D57V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       17     22     13     24
  9P LOSS WILD-TYPE     36     29     24     41
D57V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              17                36
  CLUS_2              22                29
  CLUS_3              13                24
  CLUS_4              24                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        5     21     50
  9P LOSS WILD-TYPE     11     51     68
D57V4, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               5                11
  CLUS_2              21                51
  CLUS_3              50                68
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       79     47     46
  9P LOSS WILD-TYPE    128     87    106
D57V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              79               128
  CLUS_2              47                87
  CLUS_3              46               106
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       45     58     69
  9P LOSS WILD-TYPE     95    119    107
D57V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              45                95
  CLUS_2              58               119
  CLUS_3              69               107
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       45     81     48
  9P LOSS WILD-TYPE    100    135     98
D57V7, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              45               100
  CLUS_2              81               135
  CLUS_3              48                98
D57V8, binary
                   cls
clus                  0   1
  9P LOSS MUTATED    64 110
  9P LOSS WILD-TYPE 126 207
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     64  110
  9P LOSS WILD-TYPE  126  207
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              64               126
  CLUS_2             110               207
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       52     55     52
  9P LOSS WILD-TYPE    122    104     86
D57V9, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              52               122
  CLUS_2              55               104
  CLUS_3              52                86
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       54     76     29
  9P LOSS WILD-TYPE    113    154     45
D57V10, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              54               113
  CLUS_2              76               154
  CLUS_3              29                45

Clustering(58) Variable = 9Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       52     19     12      0
  9Q LOSS WILD-TYPE    126     83    177     42
D58V1, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              52               126
  CLUS_2              19                83
  CLUS_3              12               177
  CLUS_4               0                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q LOSS MUTATED       21     18     26      4      4      5      5
  9Q LOSS WILD-TYPE     52     77     66     75     67     74     17
D58V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        8      9      6     11
  9Q LOSS WILD-TYPE     45     42     31     54
D58V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               8                45
  CLUS_2               9                42
  CLUS_3               6                31
  CLUS_4              11                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        2     12     20
  9Q LOSS WILD-TYPE     14     60     98
D58V4, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               2                14
  CLUS_2              12                60
  CLUS_3              20                98
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       33     25     22
  9Q LOSS WILD-TYPE    174    109    130
D58V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              33               174
  CLUS_2              25               109
  CLUS_3              22               130
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       22     31     27
  9Q LOSS WILD-TYPE    118    146    149
D58V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              22               118
  CLUS_2              31               146
  CLUS_3              27               149
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       23     33     26
  9Q LOSS WILD-TYPE    122    183    120
D58V7, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              23               122
  CLUS_2              33               183
  CLUS_3              26               120
D58V8, binary
                   cls
clus                  0   1
  9Q LOSS MUTATED    33  49
  9Q LOSS WILD-TYPE 157 268
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     33   49
  9Q LOSS WILD-TYPE  157  268
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              33               157
  CLUS_2              49               268
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       25     24     31
  9Q LOSS WILD-TYPE    149    135    107
D58V9, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              25               149
  CLUS_2              24               135
  CLUS_3              31               107
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       29     34     17
  9Q LOSS WILD-TYPE    138    196     57
D58V10, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              29               138
  CLUS_2              34               196
  CLUS_3              17                57

Clustering(59) Variable = 10P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       72     31     34     14
  10P LOSS WILD-TYPE    106     71    155     28
D59V1, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               72                106
  CLUS_2               31                 71
  CLUS_3               34                155
  CLUS_4               14                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P LOSS MUTATED       21     41     34     15     18     13      9
  10P LOSS WILD-TYPE     52     54     58     64     53     66     13
D59V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       20     14     15     17
  10P LOSS WILD-TYPE     33     37     22     48
D59V3, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               20                 33
  CLUS_2               14                 37
  CLUS_3               15                 22
  CLUS_4               17                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        4     30     32
  10P LOSS WILD-TYPE     12     42     86
D59V4, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                4                 12
  CLUS_2               30                 42
  CLUS_3               32                 86
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       57     51     39
  10P LOSS WILD-TYPE    150     83    113
D59V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               57                150
  CLUS_2               51                 83
  CLUS_3               39                113
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       51     49     47
  10P LOSS WILD-TYPE     89    128    129
D59V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               51                 89
  CLUS_2               49                128
  CLUS_3               47                129
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       33     67     49
  10P LOSS WILD-TYPE    112    149     97
D59V7, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               33                112
  CLUS_2               67                149
  CLUS_3               49                 97
D59V8, binary
                    cls
clus                   0   1
  10P LOSS MUTATED    64  85
  10P LOSS WILD-TYPE 126 232
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     64   85
  10P LOSS WILD-TYPE  126  232
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               64                126
  CLUS_2               85                232
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       44     50     46
  10P LOSS WILD-TYPE    130    109     92
D59V9, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               44                130
  CLUS_2               50                109
  CLUS_3               46                 92
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       56     61     23
  10P LOSS WILD-TYPE    111    169     51
D59V10, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               56                111
  CLUS_2               61                169
  CLUS_3               23                 51

Clustering(60) Variable = 10Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       50     30     22      7
  10Q LOSS WILD-TYPE    128     72    167     35
D60V1, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               50                128
  CLUS_2               30                 72
  CLUS_3               22                167
  CLUS_4                7                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q LOSS MUTATED       16     26     31     14      9      7      6
  10Q LOSS WILD-TYPE     57     69     61     65     62     72     16
D60V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       13     16      7     10
  10Q LOSS WILD-TYPE     40     35     30     55
D60V3, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               13                 40
  CLUS_2               16                 35
  CLUS_3                7                 30
  CLUS_4               10                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        4     20     22
  10Q LOSS WILD-TYPE     12     52     96
D60V4, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                4                 12
  CLUS_2               20                 52
  CLUS_3               22                 96
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       54     31     21
  10Q LOSS WILD-TYPE    153    103    131
D60V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               54                153
  CLUS_2               31                103
  CLUS_3               21                131
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       33     29     44
  10Q LOSS WILD-TYPE    107    148    132
D60V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               33                107
  CLUS_2               29                148
  CLUS_3               44                132
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       21     57     28
  10Q LOSS WILD-TYPE    124    159    118
D60V7, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               21                124
  CLUS_2               57                159
  CLUS_3               28                118
D60V8, binary
                    cls
clus                   0   1
  10Q LOSS MUTATED    41  65
  10Q LOSS WILD-TYPE 149 252
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     41   65
  10Q LOSS WILD-TYPE  149  252
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               41                149
  CLUS_2               65                252
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       30     39     30
  10Q LOSS WILD-TYPE    144    120    108
D60V9, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               30                144
  CLUS_2               39                120
  CLUS_3               30                108
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       38     46     15
  10Q LOSS WILD-TYPE    129    184     59
D60V10, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               38                129
  CLUS_2               46                184
  CLUS_3               15                 59

Clustering(61) Variable = 11P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED       62     41     27      4
  11P LOSS WILD-TYPE    116     61    162     38
D61V1, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               62                116
  CLUS_2               41                 61
  CLUS_3               27                162
  CLUS_4                4                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P LOSS MUTATED       23     20     38     21      6     21      5
  11P LOSS WILD-TYPE     50     75     54     58     65     58     17
D61V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED       14     18     10     13
  11P LOSS WILD-TYPE     39     33     27     52
D61V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               14                 39
  CLUS_2               18                 33
  CLUS_3               10                 27
  CLUS_4               13                 52
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        5     19     31
  11P LOSS WILD-TYPE     11     53     87
D61V4, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                5                 11
  CLUS_2               19                 53
  CLUS_3               31                 87
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       68     34     27
  11P LOSS WILD-TYPE    139    100    125
D61V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               68                139
  CLUS_2               34                100
  CLUS_3               27                125
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       33     38     58
  11P LOSS WILD-TYPE    107    139    118
D61V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               33                107
  CLUS_2               38                139
  CLUS_3               58                118
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       27     72     35
  11P LOSS WILD-TYPE    118    144    111
D61V7, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               27                118
  CLUS_2               72                144
  CLUS_3               35                111
D61V8, binary
                    cls
clus                   0   1
  11P LOSS MUTATED    48  86
  11P LOSS WILD-TYPE 142 231
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     48   86
  11P LOSS WILD-TYPE  142  231
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               48                142
  CLUS_2               86                231
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       40     47     35
  11P LOSS WILD-TYPE    134    112    103
D61V9, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               40                134
  CLUS_2               47                112
  CLUS_3               35                103
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       40     68     14
  11P LOSS WILD-TYPE    127    162     60
D61V10, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               40                127
  CLUS_2               68                162
  CLUS_3               14                 60

Clustering(62) Variable = 11Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED       73     41     41      9
  11Q LOSS WILD-TYPE    105     61    148     33
D62V1, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               73                105
  CLUS_2               41                 61
  CLUS_3               41                148
  CLUS_4                9                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q LOSS MUTATED       19     28     39     44      9     20      5
  11Q LOSS WILD-TYPE     54     67     53     35     62     59     17
D62V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED       18     21     10     16
  11Q LOSS WILD-TYPE     35     30     27     49
D62V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               18                 35
  CLUS_2               21                 30
  CLUS_3               10                 27
  CLUS_4               16                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        7     24     34
  11Q LOSS WILD-TYPE      9     48     84
D62V4, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                7                  9
  CLUS_2               24                 48
  CLUS_3               34                 84
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       82     40     36
  11Q LOSS WILD-TYPE    125     94    116
D62V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               82                125
  CLUS_2               40                 94
  CLUS_3               36                116
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       42     44     72
  11Q LOSS WILD-TYPE     98    133    104
D62V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               42                 98
  CLUS_2               44                133
  CLUS_3               72                104
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       42     78     43
  11Q LOSS WILD-TYPE    103    138    103
D62V7, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               42                103
  CLUS_2               78                138
  CLUS_3               43                103
D62V8, binary
                    cls
clus                   0   1
  11Q LOSS MUTATED    59 104
  11Q LOSS WILD-TYPE 131 213
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     59  104
  11Q LOSS WILD-TYPE  131  213
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               59                131
  CLUS_2              104                213
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       49     56     43
  11Q LOSS WILD-TYPE    125    103     95
D62V9, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               49                125
  CLUS_2               56                103
  CLUS_3               43                 95
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       51     75     22
  11Q LOSS WILD-TYPE    116    155     52
D62V10, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               51                116
  CLUS_2               75                155
  CLUS_3               22                 52

Clustering(63) Variable = 12P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED       15      8     10      3
  12P LOSS WILD-TYPE    163     94    179     39
D63V1, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               15                163
  CLUS_2                8                 94
  CLUS_3               10                179
  CLUS_4                3                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12P LOSS MUTATED        4      8      6      9      3      2      4
  12P LOSS WILD-TYPE     69     87     86     70     68     77     18
D63V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        3      3      4      3
  12P LOSS WILD-TYPE     50     48     33     62
D63V3, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                3                 50
  CLUS_2                3                 48
  CLUS_3                4                 33
  CLUS_4                3                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        1      6      6
  12P LOSS WILD-TYPE     15     66    112
D63V4, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                6                 66
  CLUS_3                6                112
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       15     11     10
  12P LOSS WILD-TYPE    192    123    142
D63V5, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               15                192
  CLUS_2               11                123
  CLUS_3               10                142
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       11     12     13
  12P LOSS WILD-TYPE    129    165    163
D63V6, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               11                129
  CLUS_2               12                165
  CLUS_3               13                163
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       10     15     10
  12P LOSS WILD-TYPE    135    201    136
D63V7, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               10                135
  CLUS_2               15                201
  CLUS_3               10                136
D63V8, binary
                    cls
clus                   0   1
  12P LOSS MUTATED    15  20
  12P LOSS WILD-TYPE 175 297
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED     15   20
  12P LOSS WILD-TYPE  175  297
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               15                175
  CLUS_2               20                297
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        8     13     10
  12P LOSS WILD-TYPE    166    146    128
D63V9, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                8                166
  CLUS_2               13                146
  CLUS_3               10                128
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       11     17      3
  12P LOSS WILD-TYPE    156    213     71
D63V10, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               11                156
  CLUS_2               17                213
  CLUS_3                3                 71

Clustering(64) Variable = 12Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED       19      6      5      2
  12Q LOSS WILD-TYPE    159     96    184     40
D64V1, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               19                159
  CLUS_2                6                 96
  CLUS_3                5                184
  CLUS_4                2                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q LOSS MUTATED        5      7     11      5      0      1      3
  12Q LOSS WILD-TYPE     68     88     81     74     71     78     19
D64V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        3      4      3      3
  12Q LOSS WILD-TYPE     50     47     34     62
D64V3, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                3                 50
  CLUS_2                4                 47
  CLUS_3                3                 34
  CLUS_4                3                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        1      7      5
  12Q LOSS WILD-TYPE     15     65    113
D64V4, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                7                 65
  CLUS_3                5                113
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       14      6     12
  12Q LOSS WILD-TYPE    193    128    140
D64V5, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               14                193
  CLUS_2                6                128
  CLUS_3               12                140
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        6     12     14
  12Q LOSS WILD-TYPE    134    165    162
D64V6, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                6                134
  CLUS_2               12                165
  CLUS_3               14                162
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        9     13      8
  12Q LOSS WILD-TYPE    136    203    138
D64V7, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                9                136
  CLUS_2               13                203
  CLUS_3                8                138
D64V8, binary
                    cls
clus                   0   1
  12Q LOSS MUTATED    10  20
  12Q LOSS WILD-TYPE 180 297
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED     10   20
  12Q LOSS WILD-TYPE  180  297
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               10                180
  CLUS_2               20                297
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        7     14      7
  12Q LOSS WILD-TYPE    167    145    131
D64V9, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                7                167
  CLUS_2               14                145
  CLUS_3                7                131
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        8     17      3
  12Q LOSS WILD-TYPE    159    213     71
D64V10, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                8                159
  CLUS_2               17                213
  CLUS_3                3                 71

Clustering(65) Variable = 13Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       52     66     31     13
  13Q LOSS WILD-TYPE    126     36    158     29
D65V1, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               52                126
  CLUS_2               66                 36
  CLUS_3               31                158
  CLUS_4               13                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q LOSS MUTATED       34     30     44     25     11     17      1
  13Q LOSS WILD-TYPE     39     65     48     54     60     62     21
D65V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       16     21     11     17
  13Q LOSS WILD-TYPE     37     30     26     48
D65V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               16                 37
  CLUS_2               21                 30
  CLUS_3               11                 26
  CLUS_4               17                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        6     23     36
  13Q LOSS WILD-TYPE     10     49     82
D65V4, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                6                 10
  CLUS_2               23                 49
  CLUS_3               36                 82
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       81     42     34
  13Q LOSS WILD-TYPE    126     92    118
D65V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               81                126
  CLUS_2               42                 92
  CLUS_3               34                118
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       44     39     74
  13Q LOSS WILD-TYPE     96    138    102
D65V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               44                 96
  CLUS_2               39                138
  CLUS_3               74                102
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       40     82     39
  13Q LOSS WILD-TYPE    105    134    107
D65V7, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               40                105
  CLUS_2               82                134
  CLUS_3               39                107
D65V8, binary
                    cls
clus                   0   1
  13Q LOSS MUTATED    56 105
  13Q LOSS WILD-TYPE 134 212
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     56  105
  13Q LOSS WILD-TYPE  134  212
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               56                134
  CLUS_2              105                212
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       48     55     46
  13Q LOSS WILD-TYPE    126    104     92
D65V9, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               48                126
  CLUS_2               55                104
  CLUS_3               46                 92
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       48     84     17
  13Q LOSS WILD-TYPE    119    146     57
D65V10, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               48                119
  CLUS_2               84                146
  CLUS_3               17                 57

Clustering(66) Variable = 14Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED       14     21     17      2
  14Q LOSS WILD-TYPE    164     81    172     40
D66V1, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               14                164
  CLUS_2               21                 81
  CLUS_3               17                172
  CLUS_4                2                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q LOSS MUTATED       11      6     15     15      4      2      1
  14Q LOSS WILD-TYPE     62     89     77     64     67     77     21
D66V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        4     11      1      6
  14Q LOSS WILD-TYPE     49     40     36     59
D66V3, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                4                 49
  CLUS_2               11                 40
  CLUS_3                1                 36
  CLUS_4                6                 59
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        3      6     13
  14Q LOSS WILD-TYPE     13     66    105
D66V4, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                3                 13
  CLUS_2                6                 66
  CLUS_3               13                105
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       37     10      6
  14Q LOSS WILD-TYPE    170    124    146
D66V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               37                170
  CLUS_2               10                124
  CLUS_3                6                146
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       12     10     31
  14Q LOSS WILD-TYPE    128    167    145
D66V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               12                128
  CLUS_2               10                167
  CLUS_3               31                145
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        9     34     10
  14Q LOSS WILD-TYPE    136    182    136
D66V7, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                9                136
  CLUS_2               34                182
  CLUS_3               10                136
D66V8, binary
                    cls
clus                   0   1
  14Q LOSS MUTATED    13  40
  14Q LOSS WILD-TYPE 177 277
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED     13   40
  14Q LOSS WILD-TYPE  177  277
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               13                177
  CLUS_2               40                277
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       15     23     14
  14Q LOSS WILD-TYPE    159    136    124
D66V9, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               15                159
  CLUS_2               23                136
  CLUS_3               14                124
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       12     34      6
  14Q LOSS WILD-TYPE    155    196     68
D66V10, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               12                155
  CLUS_2               34                196
  CLUS_3                6                 68

Clustering(67) Variable = 15Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED       48     20     14     16
  15Q LOSS WILD-TYPE    130     82    175     26
D67V1, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               48                130
  CLUS_2               20                 82
  CLUS_3               14                175
  CLUS_4               16                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q LOSS MUTATED       16     24     20     10     10     12      6
  15Q LOSS WILD-TYPE     57     71     72     69     61     67     16
D67V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED       11     14      6     16
  15Q LOSS WILD-TYPE     42     37     31     49
D67V3, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               11                 42
  CLUS_2               14                 37
  CLUS_3                6                 31
  CLUS_4               16                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        3     13     31
  15Q LOSS WILD-TYPE     13     59     87
D67V4, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                3                 13
  CLUS_2               13                 59
  CLUS_3               31                 87
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       39     34     24
  15Q LOSS WILD-TYPE    168    100    128
D67V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               39                168
  CLUS_2               34                100
  CLUS_3               24                128
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       35     26     36
  15Q LOSS WILD-TYPE    105    151    140
D67V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               35                105
  CLUS_2               26                151
  CLUS_3               36                140
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       31     39     28
  15Q LOSS WILD-TYPE    114    177    118
D67V7, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               31                114
  CLUS_2               39                177
  CLUS_3               28                118
D67V8, binary
                    cls
clus                   0   1
  15Q LOSS MUTATED    42  56
  15Q LOSS WILD-TYPE 148 261
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     42   56
  15Q LOSS WILD-TYPE  148  261
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               42                148
  CLUS_2               56                261
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       38     27     26
  15Q LOSS WILD-TYPE    136    132    112
D67V9, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               38                136
  CLUS_2               27                132
  CLUS_3               26                112
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       38     39     14
  15Q LOSS WILD-TYPE    129    191     60
D67V10, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               38                129
  CLUS_2               39                191
  CLUS_3               14                 60

Clustering(68) Variable = 16P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED       25     17      9      9
  16P LOSS WILD-TYPE    153     85    180     33
D68V1, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               25                153
  CLUS_2               17                 85
  CLUS_3                9                180
  CLUS_4                9                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P LOSS MUTATED        8     10     20     10      3      5      4
  16P LOSS WILD-TYPE     65     85     72     69     68     74     18
D68V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        5      5      2      7
  16P LOSS WILD-TYPE     48     46     35     58
D68V3, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                5                 48
  CLUS_2                5                 46
  CLUS_3                2                 35
  CLUS_4                7                 58
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        2      7     10
  16P LOSS WILD-TYPE     14     65    108
D68V4, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                2                 14
  CLUS_2                7                 65
  CLUS_3               10                108
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       32     18      8
  16P LOSS WILD-TYPE    175    116    144
D68V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               32                175
  CLUS_2               18                116
  CLUS_3                8                144
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       16     14     28
  16P LOSS WILD-TYPE    124    163    148
D68V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               16                124
  CLUS_2               14                163
  CLUS_3               28                148
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       17     26     16
  16P LOSS WILD-TYPE    128    190    130
D68V7, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               17                128
  CLUS_2               26                190
  CLUS_3               16                130
D68V8, binary
                    cls
clus                   0   1
  16P LOSS MUTATED    26  33
  16P LOSS WILD-TYPE 164 284
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     26   33
  16P LOSS WILD-TYPE  164  284
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               26                164
  CLUS_2               33                284
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       18     19     17
  16P LOSS WILD-TYPE    156    140    121
D68V9, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               18                156
  CLUS_2               19                140
  CLUS_3               17                121
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       21     27      6
  16P LOSS WILD-TYPE    146    203     68
D68V10, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               21                146
  CLUS_2               27                203
  CLUS_3                6                 68

Clustering(69) Variable = 16Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED       17     25     27      9
  16Q LOSS WILD-TYPE    161     77    162     33
D69V1, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               17                161
  CLUS_2               25                 77
  CLUS_3               27                162
  CLUS_4                9                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q LOSS MUTATED       11      4     25     27      4      4      3
  16Q LOSS WILD-TYPE     62     91     67     52     67     75     19
D69V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        5     10      4      8
  16Q LOSS WILD-TYPE     48     41     33     57
D69V3, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                5                 48
  CLUS_2               10                 41
  CLUS_3                4                 33
  CLUS_4                8                 57
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        5      7     15
  16Q LOSS WILD-TYPE     11     65    103
D69V4, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                5                 11
  CLUS_2                7                 65
  CLUS_3               15                103
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       57     15      5
  16Q LOSS WILD-TYPE    150    119    147
D69V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               57                150
  CLUS_2               15                119
  CLUS_3                5                147
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       17      9     51
  16Q LOSS WILD-TYPE    123    168    125
D69V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               17                123
  CLUS_2                9                168
  CLUS_3               51                125
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       15     47     15
  16Q LOSS WILD-TYPE    130    169    131
D69V7, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               15                130
  CLUS_2               47                169
  CLUS_3               15                131
D69V8, binary
                    cls
clus                   0   1
  16Q LOSS MUTATED    19  58
  16Q LOSS WILD-TYPE 171 259
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     19   58
  16Q LOSS WILD-TYPE  171  259
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               19                171
  CLUS_2               58                259
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       15     37     16
  16Q LOSS WILD-TYPE    159    122    122
D69V9, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               15                159
  CLUS_2               37                122
  CLUS_3               16                122
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       16     48      4
  16Q LOSS WILD-TYPE    151    182     70
D69V10, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               16                151
  CLUS_2               48                182
  CLUS_3                4                 70

Clustering(70) Variable = 17P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       43     32     20      8
  17P LOSS WILD-TYPE    135     70    169     34
D70V1, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               43                135
  CLUS_2               32                 70
  CLUS_3               20                169
  CLUS_4                8                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P LOSS MUTATED       25     23     19     17      7      8      4
  17P LOSS WILD-TYPE     48     72     73     62     64     71     18
D70V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       17     10      7     14
  17P LOSS WILD-TYPE     36     41     30     51
D70V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               17                 36
  CLUS_2               10                 41
  CLUS_3                7                 30
  CLUS_4               14                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        6     18     24
  17P LOSS WILD-TYPE     10     54     94
D70V4, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                6                 10
  CLUS_2               18                 54
  CLUS_3               24                 94
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       47     27     27
  17P LOSS WILD-TYPE    160    107    125
D70V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               47                160
  CLUS_2               27                107
  CLUS_3               27                125
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       28     28     45
  17P LOSS WILD-TYPE    112    149    131
D70V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               28                112
  CLUS_2               28                149
  CLUS_3               45                131
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       27     49     27
  17P LOSS WILD-TYPE    118    167    119
D70V7, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               27                118
  CLUS_2               49                167
  CLUS_3               27                119
D70V8, binary
                    cls
clus                   0   1
  17P LOSS MUTATED    38  65
  17P LOSS WILD-TYPE 152 252
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     38   65
  17P LOSS WILD-TYPE  152  252
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               38                152
  CLUS_2               65                252
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       30     39     27
  17P LOSS WILD-TYPE    144    120    111
D70V9, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               30                144
  CLUS_2               39                120
  CLUS_3               27                111
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       33     51     12
  17P LOSS WILD-TYPE    134    179     62
D70V10, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               33                134
  CLUS_2               51                179
  CLUS_3               12                 62

Clustering(71) Variable = 17Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED       17      6      4      7
  17Q LOSS WILD-TYPE    161     96    185     35
D71V1, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               17                161
  CLUS_2                6                 96
  CLUS_3                4                185
  CLUS_4                7                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q LOSS MUTATED        2      8     10      6      3      3      2
  17Q LOSS WILD-TYPE     71     87     82     73     68     76     20
D71V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        4      3      3      3
  17Q LOSS WILD-TYPE     49     48     34     62
D71V3, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                4                 49
  CLUS_2                3                 48
  CLUS_3                3                 34
  CLUS_4                3                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        4      6      3
  17Q LOSS WILD-TYPE     12     66    115
D71V4, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                4                 12
  CLUS_2                6                 66
  CLUS_3                3                115
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       13     12      8
  17Q LOSS WILD-TYPE    194    122    144
D71V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               13                194
  CLUS_2               12                122
  CLUS_3                8                144
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       11     11     11
  17Q LOSS WILD-TYPE    129    166    165
D71V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               11                129
  CLUS_2               11                166
  CLUS_3               11                165
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       10     13     10
  17Q LOSS WILD-TYPE    135    203    136
D71V7, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               10                135
  CLUS_2               13                203
  CLUS_3               10                136
D71V8, binary
                    cls
clus                   0   1
  17Q LOSS MUTATED    15  18
  17Q LOSS WILD-TYPE 175 299
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED     15   18
  17Q LOSS WILD-TYPE  175  299
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               15                175
  CLUS_2               18                299
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       11     11      9
  17Q LOSS WILD-TYPE    163    148    129
D71V9, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               11                163
  CLUS_2               11                148
  CLUS_3                9                129
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       14     12      5
  17Q LOSS WILD-TYPE    153    218     69
D71V10, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               14                153
  CLUS_2               12                218
  CLUS_3                5                 69

Clustering(72) Variable = 18P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED       41     19     27     14
  18P LOSS WILD-TYPE    137     83    162     28
D72V1, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               41                137
  CLUS_2               19                 83
  CLUS_3               27                162
  CLUS_4               14                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P LOSS MUTATED       14     24     29      2     10     17      5
  18P LOSS WILD-TYPE     59     71     63     77     61     62     17
D72V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED       12      9      8     19
  18P LOSS WILD-TYPE     41     42     29     46
D72V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               12                 41
  CLUS_2                9                 42
  CLUS_3                8                 29
  CLUS_4               19                 46
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        1     16     31
  18P LOSS WILD-TYPE     15     56     87
D72V4, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                1                 15
  CLUS_2               16                 56
  CLUS_3               31                 87
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       40     33     26
  18P LOSS WILD-TYPE    167    101    126
D72V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               40                167
  CLUS_2               33                101
  CLUS_3               26                126
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       34     38     27
  18P LOSS WILD-TYPE    106    139    149
D72V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               34                106
  CLUS_2               38                139
  CLUS_3               27                149
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       26     40     32
  18P LOSS WILD-TYPE    119    176    114
D72V7, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               26                119
  CLUS_2               40                176
  CLUS_3               32                114
D72V8, binary
                    cls
clus                   0   1
  18P LOSS MUTATED    42  56
  18P LOSS WILD-TYPE 148 261
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     42   56
  18P LOSS WILD-TYPE  148  261
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               42                148
  CLUS_2               56                261
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       34     31     30
  18P LOSS WILD-TYPE    140    128    108
D72V9, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               34                140
  CLUS_2               31                128
  CLUS_3               30                108
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       39     40     16
  18P LOSS WILD-TYPE    128    190     58
D72V10, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               39                128
  CLUS_2               40                190
  CLUS_3               16                 58

Clustering(73) Variable = 18Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED      113     37     36     22
  18Q LOSS WILD-TYPE     65     65    153     20
D73V1, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1              113                 65
  CLUS_2               37                 65
  CLUS_3               36                153
  CLUS_4               22                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q LOSS MUTATED       39     57     48      2     20     32     10
  18Q LOSS WILD-TYPE     34     38     44     77     51     47     12
D73V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       27     18     19     32
  18Q LOSS WILD-TYPE     26     33     18     33
D73V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               27                 26
  CLUS_2               18                 33
  CLUS_3               19                 18
  CLUS_4               32                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        2     36     58
  18Q LOSS WILD-TYPE     14     36     60
D73V4, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                2                 14
  CLUS_2               36                 36
  CLUS_3               58                 60
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       67     68     68
  18Q LOSS WILD-TYPE    140     66     84
D73V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               67                140
  CLUS_2               68                 66
  CLUS_3               68                 84
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       72     77     54
  18Q LOSS WILD-TYPE     68    100    122
D73V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               72                 68
  CLUS_2               77                100
  CLUS_3               54                122
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       64     69     73
  18Q LOSS WILD-TYPE     81    147     73
D73V7, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               64                 81
  CLUS_2               69                147
  CLUS_3               73                 73
D73V8, binary
                    cls
clus                   0   1
  18Q LOSS MUTATED    97 109
  18Q LOSS WILD-TYPE  93 208
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     97  109
  18Q LOSS WILD-TYPE   93  208
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               97                 93
  CLUS_2              109                208
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       76     54     59
  18Q LOSS WILD-TYPE     98    105     79
D73V9, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               76                 98
  CLUS_2               54                105
  CLUS_3               59                 79
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       75     78     36
  18Q LOSS WILD-TYPE     92    152     38
D73V10, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               75                 92
  CLUS_2               78                152
  CLUS_3               36                 38

Clustering(74) Variable = 19P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED       48     16     19     10
  19P LOSS WILD-TYPE    130     86    170     32
D74V1, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               48                130
  CLUS_2               16                 86
  CLUS_3               19                170
  CLUS_4               10                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P LOSS MUTATED       12     33     20      7      8      7      6
  19P LOSS WILD-TYPE     61     62     72     72     63     72     16
D74V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED       14     10      9     12
  19P LOSS WILD-TYPE     39     41     28     53
D74V3, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               14                 39
  CLUS_2               10                 41
  CLUS_3                9                 28
  CLUS_4               12                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        1     19     25
  19P LOSS WILD-TYPE     15     53     93
D74V4, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 15
  CLUS_2               19                 53
  CLUS_3               25                 93
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       31     35     23
  19P LOSS WILD-TYPE    176     99    129
D74V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               31                176
  CLUS_2               35                 99
  CLUS_3               23                129
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       32     33     24
  19P LOSS WILD-TYPE    108    144    152
D74V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               32                108
  CLUS_2               33                144
  CLUS_3               24                152
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       24     31     36
  19P LOSS WILD-TYPE    121    185    110
D74V7, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               24                121
  CLUS_2               31                185
  CLUS_3               36                110
D74V8, binary
                    cls
clus                   0   1
  19P LOSS MUTATED    47  44
  19P LOSS WILD-TYPE 143 273
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     47   44
  19P LOSS WILD-TYPE  143  273
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               47                143
  CLUS_2               44                273
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       30     26     28
  19P LOSS WILD-TYPE    144    133    110
D74V9, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               30                144
  CLUS_2               26                133
  CLUS_3               28                110
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       34     35     15
  19P LOSS WILD-TYPE    133    195     59
D74V10, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               34                133
  CLUS_2               35                195
  CLUS_3               15                 59

Clustering(75) Variable = 19Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED       39     21     13      9
  19Q LOSS WILD-TYPE    139     81    176     33
D75V1, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               39                139
  CLUS_2               21                 81
  CLUS_3               13                176
  CLUS_4                9                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q LOSS MUTATED       12     27     23      5      7      5      3
  19Q LOSS WILD-TYPE     61     68     69     74     64     74     19
D75V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        9     14      8      7
  19Q LOSS WILD-TYPE     44     37     29     58
D75V3, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                9                 44
  CLUS_2               14                 37
  CLUS_3                8                 29
  CLUS_4                7                 58
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        3     16     19
  19Q LOSS WILD-TYPE     13     56     99
D75V4, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                3                 13
  CLUS_2               16                 56
  CLUS_3               19                 99
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       30     28     21
  19Q LOSS WILD-TYPE    177    106    131
D75V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               30                177
  CLUS_2               28                106
  CLUS_3               21                131
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       25     29     25
  19Q LOSS WILD-TYPE    115    148    151
D75V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               25                115
  CLUS_2               29                148
  CLUS_3               25                151
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       19     33     28
  19Q LOSS WILD-TYPE    126    183    118
D75V7, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               19                126
  CLUS_2               33                183
  CLUS_3               28                118
D75V8, binary
                    cls
clus                   0   1
  19Q LOSS MUTATED    39  41
  19Q LOSS WILD-TYPE 151 276
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED     39   41
  19Q LOSS WILD-TYPE  151  276
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               39                151
  CLUS_2               41                276
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       30     23     22
  19Q LOSS WILD-TYPE    144    136    116
D75V9, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               30                144
  CLUS_2               23                136
  CLUS_3               22                116
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       29     33     13
  19Q LOSS WILD-TYPE    138    197     61
D75V10, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               29                138
  CLUS_2               33                197
  CLUS_3               13                 61

Clustering(76) Variable = 20P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED       22     16      6      2
  20P LOSS WILD-TYPE    156     86    183     40
D76V1, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               22                156
  CLUS_2               16                 86
  CLUS_3                6                183
  CLUS_4                2                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P LOSS MUTATED       11      6     16      6      4      3      0
  20P LOSS WILD-TYPE     62     89     76     73     67     76     22
D76V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        5      8      2      6
  20P LOSS WILD-TYPE     48     43     35     59
D76V3, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                5                 48
  CLUS_2                8                 43
  CLUS_3                2                 35
  CLUS_4                6                 59
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        3      7     11
  20P LOSS WILD-TYPE     13     65    107
D76V4, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                3                 13
  CLUS_2                7                 65
  CLUS_3               11                107
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       26     10      9
  20P LOSS WILD-TYPE    181    124    143
D76V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               26                181
  CLUS_2               10                124
  CLUS_3                9                143
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       10     12     23
  20P LOSS WILD-TYPE    130    165    153
D76V6, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               10                130
  CLUS_2               12                165
  CLUS_3               23                153
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       13     23      9
  20P LOSS WILD-TYPE    132    193    137
D76V7, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               13                132
  CLUS_2               23                193
  CLUS_3                9                137
D76V8, binary
                    cls
clus                   0   1
  20P LOSS MUTATED    10  35
  20P LOSS WILD-TYPE 180 282
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED     10   35
  20P LOSS WILD-TYPE  180  282
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               10                180
  CLUS_2               35                282
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        6     23     13
  20P LOSS WILD-TYPE    168    136    125
D76V9, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                6                168
  CLUS_2               23                136
  CLUS_3               13                125
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       10     27      5
  20P LOSS WILD-TYPE    157    203     69
D76V10, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               10                157
  CLUS_2               27                203
  CLUS_3                5                 69

Clustering(77) Variable = 20Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        8     13      6      1
  20Q LOSS WILD-TYPE    170     89    183     41
D77V1, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                8                170
  CLUS_2               13                 89
  CLUS_3                6                183
  CLUS_4                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q LOSS MUTATED        6      1     10      7      2      1      1
  20Q LOSS WILD-TYPE     67     94     82     72     69     78     21
D77V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        4      5      0      6
  20Q LOSS WILD-TYPE     49     46     37     59
D77V3, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                4                 49
  CLUS_2                5                 46
  CLUS_3                0                 37
  CLUS_4                6                 59
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        3      4      8
  20Q LOSS WILD-TYPE     13     68    110
D77V4, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                3                 13
  CLUS_2                4                 68
  CLUS_3                8                110
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED       19      4      5
  20Q LOSS WILD-TYPE    188    130    147
D77V5, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               19                188
  CLUS_2                4                130
  CLUS_3                5                147
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        5      5     18
  20Q LOSS WILD-TYPE    135    172    158
D77V6, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                5                135
  CLUS_2                5                172
  CLUS_3               18                158
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        4     19      5
  20Q LOSS WILD-TYPE    141    197    141
D77V7, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                4                141
  CLUS_2               19                197
  CLUS_3                5                141
D77V8, binary
                    cls
clus                   0   1
  20Q LOSS MUTATED     5  23
  20Q LOSS WILD-TYPE 185 294
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      5   23
  20Q LOSS WILD-TYPE  185  294
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                5                185
  CLUS_2               23                294
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        2     18      6
  20Q LOSS WILD-TYPE    172    141    132
D77V9, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                172
  CLUS_2               18                141
  CLUS_3                6                132
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        4     20      2
  20Q LOSS WILD-TYPE    163    210     72
D77V10, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                4                163
  CLUS_2               20                210
  CLUS_3                2                 72

Clustering(78) Variable = 21Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED       81     47     30     21
  21Q LOSS WILD-TYPE     97     55    159     21
D78V1, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               81                 97
  CLUS_2               47                 55
  CLUS_3               30                159
  CLUS_4               21                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q LOSS MUTATED       26     50     49     10     18     18      8
  21Q LOSS WILD-TYPE     47     45     43     69     53     61     14
D78V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED       21     16     16     28
  21Q LOSS WILD-TYPE     32     35     21     37
D78V3, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               21                 32
  CLUS_2               16                 35
  CLUS_3               16                 21
  CLUS_4               28                 37
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        4     29     48
  21Q LOSS WILD-TYPE     12     43     70
D78V4, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                4                 12
  CLUS_2               29                 43
  CLUS_3               48                 70
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       61     58     54
  21Q LOSS WILD-TYPE    146     76     98
D78V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               61                146
  CLUS_2               58                 76
  CLUS_3               54                 98
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       59     58     56
  21Q LOSS WILD-TYPE     81    119    120
D78V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               59                 81
  CLUS_2               58                119
  CLUS_3               56                120
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       53     70     55
  21Q LOSS WILD-TYPE     92    146     91
D78V7, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               53                 92
  CLUS_2               70                146
  CLUS_3               55                 91
D78V8, binary
                    cls
clus                   0   1
  21Q LOSS MUTATED    76 102
  21Q LOSS WILD-TYPE 114 215
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     76  102
  21Q LOSS WILD-TYPE  114  215
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               76                114
  CLUS_2              102                215
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       64     54     53
  21Q LOSS WILD-TYPE    110    105     85
D78V9, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               64                110
  CLUS_2               54                105
  CLUS_3               53                 85
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       69     75     27
  21Q LOSS WILD-TYPE     98    155     47
D78V10, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               69                 98
  CLUS_2               75                155
  CLUS_3               27                 47

Clustering(79) Variable = 22Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       32     14     15     11
  22Q LOSS WILD-TYPE    146     88    174     31
D79V1, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               32                146
  CLUS_2               14                 88
  CLUS_3               15                174
  CLUS_4               11                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q LOSS MUTATED        9     25      8     10     10      5      5
  22Q LOSS WILD-TYPE     64     70     84     69     61     74     17
D79V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        8      6      7      7
  22Q LOSS WILD-TYPE     45     45     30     58
D79V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                8                 45
  CLUS_2                6                 45
  CLUS_3                7                 30
  CLUS_4                7                 58
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        3     11     14
  22Q LOSS WILD-TYPE     13     61    104
D79V4, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                3                 13
  CLUS_2               11                 61
  CLUS_3               14                104
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       18     18     34
  22Q LOSS WILD-TYPE    189    116    118
D79V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               18                189
  CLUS_2               18                116
  CLUS_3               34                118
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       23     28     19
  22Q LOSS WILD-TYPE    117    149    157
D79V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               23                117
  CLUS_2               28                149
  CLUS_3               19                157
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       34     20     16
  22Q LOSS WILD-TYPE    111    196    130
D79V7, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               34                111
  CLUS_2               20                196
  CLUS_3               16                130
D79V8, binary
                    cls
clus                   0   1
  22Q LOSS MUTATED    32  38
  22Q LOSS WILD-TYPE 158 279
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     32   38
  22Q LOSS WILD-TYPE  158  279
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               32                158
  CLUS_2               38                279
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       36     16     12
  22Q LOSS WILD-TYPE    138    143    126
D79V9, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               36                138
  CLUS_2               16                143
  CLUS_3               12                126
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       27     27     10
  22Q LOSS WILD-TYPE    140    203     64
D79V10, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               27                140
  CLUS_2               27                203
  CLUS_3               10                 64

Clustering(80) Variable = XQ LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED       36     26     19      1
  XQ LOSS WILD-TYPE    142     76    170     41
D80V1, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              36               142
  CLUS_2              26                76
  CLUS_3              19               170
  CLUS_4               1                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ LOSS MUTATED       12     20     28     12      2      6      2
  XQ LOSS WILD-TYPE     61     75     64     67     69     73     20
D80V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        6      9      2     15
  XQ LOSS WILD-TYPE     47     42     35     50
D80V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               6                47
  CLUS_2               9                42
  CLUS_3               2                35
  CLUS_4              15                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        1      6     25
  XQ LOSS WILD-TYPE     15     66     93
D80V4, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               1                15
  CLUS_2               6                66
  CLUS_3              25                93
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       44     19     17
  XQ LOSS WILD-TYPE    163    115    135
D80V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              44               163
  CLUS_2              19               115
  CLUS_3              17               135
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       21     20     39
  XQ LOSS WILD-TYPE    119    157    137
D80V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              21               119
  CLUS_2              20               157
  CLUS_3              39               137
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       18     46     16
  XQ LOSS WILD-TYPE    127    170    130
D80V7, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              18               127
  CLUS_2              46               170
  CLUS_3              16               130
D80V8, binary
                   cls
clus                  0   1
  XQ LOSS MUTATED    26  54
  XQ LOSS WILD-TYPE 164 263
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED     26   54
  XQ LOSS WILD-TYPE  164  263
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              26               164
  CLUS_2              54               263
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       26     31     16
  XQ LOSS WILD-TYPE    148    128    122
D80V9, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              26               148
  CLUS_2              31               128
  CLUS_3              16               122
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       20     42     11
  XQ LOSS WILD-TYPE    147    188     63
D80V10, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              20               147
  CLUS_2              42               188
  CLUS_3              11                63
> q(save="no")
