
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRC-TP/8312253/KIRC-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/KIRC-TP/8142901/KIRC-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=.05", "-cQ=0.25", "-MF=ALL", "-oT=KIRC-TP", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=KIRC-TP"
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/KIRC-TP/8142901/KIRC-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRC-TP/8312253/KIRC-TP.mergedcluster.txt"

nPatients in clinical file=507, in cluster file=523, common to both=507
[1]  12 507
[1] "MRNA_CNMF"
[1] 3
 1  2  3 
34 24 14 
 1  2  3 
34 24 14 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3 
15 33 24 
 1  2  3 
15 33 24 
[1] "CN_CNMF"
[1] 3
  1   2   3 
158 214 126 
  1   2   3 
158 214 126 
[1] "METHLYATION_CNMF"
[1] 3
  1   2   3 
 97 114  74 
  1   2   3 
 97 114  74 
[1] "RPPA_CNMF"
[1] 3
  1   2   3   4   5   6 
101  90  86  76  44  57 
  1   2   3   4   5   6 
101  90  86  76  44  57 
[1] "RPPA_CHIERARCHICAL"
[1] 3
  1   2   3 
189 153 112 
  1   2   3 
189 153 112 
[1] "MRNASEQ_CNMF"
[1] 3
  1   2   3 
211 108 184 
  1   2   3 
211 108 184 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
221 201  81 
  1   2   3 
221 201  81 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
109 206 171 
  1   2   3 
109 206 171 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 44 263 179 
  1   2   3 
 44 263 179 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
 1  2  3 
45 96 83 
 1  2  3 
45 96 83 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
 1  2  3  4  5 
10 49 77 10 78 
 1  2  3  4  5 
10 49 77 10 78 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "RADIATIONTHERAPY"                      
[15] "KARNOFSKYPERFORMANCESCORE"             
[16] "HISTOLOGICALTYPE"                      
[17] "RADIATIONS.RADIATION.REGIMENINDICATION"
[18] "NUMBERPACKYEARSSMOKED"                 
[19] "YEAROFTOBACCOSMOKINGONSET"             
[20] "GLEASON_SCORE"                         
[21] "PSA_VALUE"                             
[22] "DAYS_TO_PSA"                           
[23] "BATCHNUMBER"                           

Input Data has 23 rows and 507 columns.

[1] "Batch" "23"   
[1] "Last Follow UP"
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3313 TCGA-A3-3316 
        1120         1436           16           NA          735         1493 
TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3323 TCGA-A3-3324 
        1491         1130         1508         1478         1106         1186 
TCGA-A3-3325 TCGA-A3-3326 TCGA-A3-3328 TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3335 
         751         1137         1385          706         1485          665 
TCGA-A3-3336 TCGA-A3-3343 TCGA-A3-3346 TCGA-A3-3347 TCGA-A3-3349 TCGA-A3-3351 
        1043          945           NA         1610         1385          910 
TCGA-A3-3352 TCGA-A3-3357 TCGA-A3-3358 TCGA-A3-3359 TCGA-A3-3362 TCGA-A3-3363 
          NA         2688         1307         2504         1559          319 
TCGA-A3-3365 TCGA-A3-3367 TCGA-A3-3370 TCGA-A3-3372 TCGA-A3-3373 TCGA-A3-3374 
         873         2270         2274          735         1621         1314 
TCGA-A3-3376 TCGA-A3-3378 TCGA-A3-3380 TCGA-A3-3382 TCGA-A3-3383 TCGA-A3-3385 
        1070          630          567          574          861         1993 
TCGA-A3-3387 TCGA-AK-3425 TCGA-AK-3426 TCGA-AK-3427 TCGA-AK-3428 TCGA-AK-3429 
         617         3343           NA         2566         2223         2017 
TCGA-AK-3430 TCGA-AK-3431 TCGA-AK-3433 TCGA-AK-3434 TCGA-AK-3436 TCGA-AK-3440 
         480         1853         2192         2087         2044         1745 
TCGA-AK-3443 TCGA-AK-3444 TCGA-AK-3445 TCGA-AK-3447 TCGA-AK-3450 TCGA-AK-3451 
        1423         1471         1280         1217         1779         1481 
TCGA-AK-3453 TCGA-AK-3454 TCGA-AK-3455 TCGA-AK-3456 TCGA-AK-3458 TCGA-AK-3460 
        1397          874           NA         1143         1168          951 
TCGA-AK-3461 TCGA-AK-3465 TCGA-AS-3777 TCGA-AS-3778 TCGA-B0-4688 TCGA-B0-4690 
         853          369         1238           NA           NA           NA 
TCGA-B0-4691 TCGA-B0-4693 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4697 TCGA-B0-4698 
          NA           NA           NA           NA           NA           NA 
TCGA-B0-4699 TCGA-B0-4700 TCGA-B0-4701 TCGA-B0-4703 TCGA-B0-4706 TCGA-B0-4707 
         110           NA           NA           NA           26           NA 
TCGA-B0-4710 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4810 
          96           NA           NA           NA          616           NA 
TCGA-B0-4811 TCGA-B0-4813 TCGA-B0-4814 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 
          NA           18           NA           NA           NA           NA 
TCGA-B0-4818 TCGA-B0-4819 TCGA-B0-4821 TCGA-B0-4822 TCGA-B0-4823 TCGA-B0-4824 
          NA          183           NA           NA           NA           NA 
TCGA-B0-4827 TCGA-B0-4828 TCGA-B0-4833 TCGA-B0-4834 TCGA-B0-4836 TCGA-B0-4837 
          NA           NA           NA           NA           NA           NA 
TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4841 TCGA-B0-4842 TCGA-B0-4843 TCGA-B0-4844 
          NA           NA           NA           NA           NA           NA 
TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4848 TCGA-B0-4849 TCGA-B0-4852 
          NA           NA           NA           NA           NA           NA 
TCGA-B0-4945 TCGA-B0-5075 TCGA-B0-5077 TCGA-B0-5080 TCGA-B0-5081 TCGA-B0-5083 
          NA           NA           NA           NA           NA           NA 
TCGA-B0-5084 TCGA-B0-5085 TCGA-B0-5088 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5095 
          NA           NA           NA           NA           NA           NA 
TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5098 TCGA-B0-5099 TCGA-B0-5100 TCGA-B0-5102 
          NA          665           NA           NA           NA           NA 
TCGA-B0-5104 TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5108 TCGA-B0-5109 TCGA-B0-5110 
          NA           NA           NA          911           NA         1092 
TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5116 TCGA-B0-5117 TCGA-B0-5119 TCGA-B0-5120 
         359          797          657          535           59          493 
TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5400 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5691 
         554          652         1132          449         2408         3431 
TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5697 
        1487         3076           NA         1420         1727         1835 
TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5701 TCGA-B0-5702 TCGA-B0-5703 
        2583         2741         1082         1732         1605         1203 
TCGA-B0-5705 TCGA-B0-5706 TCGA-B0-5707 TCGA-B0-5709 TCGA-B0-5710 TCGA-B0-5711 
        3668         2414         2828         3117         1459         2931 
TCGA-B0-5712 TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-3923 TCGA-B2-3924 TCGA-B2-4098 
        2722         1865         2963          992         1092           51 
TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5636 
         374          648          952          358          315          919 
TCGA-B2-5639 TCGA-B2-5641 TCGA-B2-A4SR TCGA-B4-5377 TCGA-B4-5378 TCGA-B4-5832 
         417          656          507          291          175            7 
TCGA-B4-5834 TCGA-B4-5835 TCGA-B4-5836 TCGA-B4-5838 TCGA-B4-5843 TCGA-B4-5844 
          38           16          141          166           11            7 
TCGA-B8-4143 TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 TCGA-B8-4153 TCGA-B8-4154 
          NA          511          826          838          762          750 
TCGA-B8-4619 TCGA-B8-4620 TCGA-B8-4621 TCGA-B8-4622 TCGA-B8-5158 TCGA-B8-5159 
         523          777          788          700          636          722 
TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5164 TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5546 
          36          822           26          737          522          505 
TCGA-B8-5549 TCGA-B8-5550 TCGA-B8-5551 TCGA-B8-5552 TCGA-B8-5553 TCGA-B8-A54I 
         194          434           15          392          435          150 
TCGA-B8-A54J TCGA-BP-4158 TCGA-BP-4159 TCGA-BP-4160 TCGA-BP-4161 TCGA-BP-4162 
          66         3377           NA         2881         2746         3074 
TCGA-BP-4163 TCGA-BP-4164 TCGA-BP-4165 TCGA-BP-4166 TCGA-BP-4167 TCGA-BP-4169 
        2839           NA         3037           13         2718          701 
TCGA-BP-4170 TCGA-BP-4173 TCGA-BP-4174 TCGA-BP-4176 TCGA-BP-4177 TCGA-BP-4325 
          NA         1893         1879         1955         1670         2964 
TCGA-BP-4326 TCGA-BP-4327 TCGA-BP-4329 TCGA-BP-4330 TCGA-BP-4331 TCGA-BP-4332 
        1625           NA          845         1888           NA         1133 
TCGA-BP-4334 TCGA-BP-4335 TCGA-BP-4337 TCGA-BP-4338 TCGA-BP-4340 TCGA-BP-4341 
         645          461           NA         2859           NA           NA 
TCGA-BP-4342 TCGA-BP-4343 TCGA-BP-4344 TCGA-BP-4345 TCGA-BP-4346 TCGA-BP-4347 
          NA           NA         1666         1516           NA         1367 
TCGA-BP-4349 TCGA-BP-4351 TCGA-BP-4352 TCGA-BP-4353 TCGA-BP-4354 TCGA-BP-4355 
         372          970           NA           NA           NA           NA 
TCGA-BP-4756 TCGA-BP-4758 TCGA-BP-4759 TCGA-BP-4760 TCGA-BP-4761 TCGA-BP-4762 
         374         2208         2372         2361          182           NA 
TCGA-BP-4763 TCGA-BP-4765 TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4769 TCGA-BP-4770 
          NA         2184         1462          400         1876           NA 
TCGA-BP-4771 TCGA-BP-4774 TCGA-BP-4775 TCGA-BP-4776 TCGA-BP-4777 TCGA-BP-4781 
          NA         1885         1843          411         1731         2080 
TCGA-BP-4782 TCGA-BP-4784 TCGA-BP-4787 TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4795 
         354         1854           NA         1489           NA          620 
TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4799 TCGA-BP-4801 TCGA-BP-4803 TCGA-BP-4804 
        1107           NA           NA         1124          204         1459 
TCGA-BP-4807 TCGA-BP-4959 TCGA-BP-4960 TCGA-BP-4961 TCGA-BP-4962 TCGA-BP-4963 
         211         2660         2172         1935         1785         1834 
TCGA-BP-4964 TCGA-BP-4965 TCGA-BP-4967 TCGA-BP-4968 TCGA-BP-4969 TCGA-BP-4970 
        1862         1871          205         1746         1794          433 
TCGA-BP-4971 TCGA-BP-4972 TCGA-BP-4973 TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 
        1487         1502         1384           NA         1433         1632 
TCGA-BP-4977 TCGA-BP-4981 TCGA-BP-4982 TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4986 
         454           NA         1014         1413           NA          785 
TCGA-BP-4987 TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4991 TCGA-BP-4992 TCGA-BP-4993 
        1124           NA          118         1413          501          177 
TCGA-BP-4994 TCGA-BP-4995 TCGA-BP-4998 TCGA-BP-4999 TCGA-BP-5000 TCGA-BP-5001 
        1308         1371          932         1266          563         1177 
TCGA-BP-5004 TCGA-BP-5006 TCGA-BP-5007 TCGA-BP-5008 TCGA-BP-5009 TCGA-BP-5010 
        1126          840         1140         1071           NA           NA 
TCGA-BP-5168 TCGA-BP-5169 TCGA-BP-5170 TCGA-BP-5173 TCGA-BP-5174 TCGA-BP-5175 
          NA          193         2412           NA         2257          932 
TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5181 TCGA-BP-5182 
          NA          293           NA         2263         1495         1165 
TCGA-BP-5183 TCGA-BP-5184 TCGA-BP-5185 TCGA-BP-5186 TCGA-BP-5187 TCGA-BP-5189 
        1291         1133         1132          693          406          822 
TCGA-BP-5190 TCGA-BP-5191 TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5195 TCGA-BP-5196 
        1011          967          714          408          749         1018 
TCGA-BP-5198 TCGA-BP-5199 TCGA-BP-5200 TCGA-BP-5201 TCGA-BP-5202 TCGA-CJ-4634 
         603         1355         1063          951           29         1820 
TCGA-CJ-4635 TCGA-CJ-4636 TCGA-CJ-4637 TCGA-CJ-4638 TCGA-CJ-4639 TCGA-CJ-4640 
        1416         1924           NA           NA         2308         1998 
TCGA-CJ-4641 TCGA-CJ-4642 TCGA-CJ-4643 TCGA-CJ-4644 TCGA-CJ-4868 TCGA-CJ-4869 
          NA         1628         1793           NA          646         2554 
TCGA-CJ-4870 TCGA-CJ-4871 TCGA-CJ-4872 TCGA-CJ-4873 TCGA-CJ-4874 TCGA-CJ-4875 
        1498         2423         1435         2259         2283         2353 
TCGA-CJ-4876 TCGA-CJ-4878 TCGA-CJ-4881 TCGA-CJ-4882 TCGA-CJ-4884 TCGA-CJ-4885 
        1955         2186         2014         1883         1759         2125 
TCGA-CJ-4886 TCGA-CJ-4887 TCGA-CJ-4888 TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4891 
        1952           NA           NA         1946         2085           NA 
TCGA-CJ-4892 TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4895 TCGA-CJ-4897 TCGA-CJ-4899 
        1521          750          841           NA         1808         1528 
TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4902 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 
          NA         1450         1520         1560         1792         1496 
TCGA-CJ-4907 TCGA-CJ-4908 TCGA-CJ-4912 TCGA-CJ-4913 TCGA-CJ-4916 TCGA-CJ-4918 
        1499         1531         1657           NA         1373           NA 
TCGA-CJ-4920 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5672 TCGA-CJ-5675 TCGA-CJ-5676 
          NA           NA         1943           NA         2430         2575 
TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5680 TCGA-CJ-5681 TCGA-CJ-5682 
          NA           NA           NA           NA          552         1883 
TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-5686 TCGA-CJ-5689 TCGA-CJ-6027 TCGA-CJ-6028 
        1889         2231         2038           NA         1855           NA 
TCGA-CJ-6030 TCGA-CJ-6031 TCGA-CJ-6032 TCGA-CJ-6033 TCGA-CW-5580 TCGA-CW-5581 
          NA         1906         2548           NA         1964         2799 
TCGA-CW-5583 TCGA-CW-5584 TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-5588 TCGA-CW-5589 
        2489          164         2609         2226         2016         2377 
TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6087 TCGA-CW-6088 TCGA-CW-6090 TCGA-CW-6093 
          NA         2270           41         3222         2552         3146 
TCGA-CW-6096 TCGA-CW-6097 TCGA-CZ-4853 TCGA-CZ-4854 TCGA-CZ-4856 TCGA-CZ-4857 
        2701          570          774         1404           18           NA 
TCGA-CZ-4858 TCGA-CZ-4859 TCGA-CZ-4860 TCGA-CZ-4861 TCGA-CZ-4862 TCGA-CZ-4863 
        1943         1787           NA           NA         1843         1928 
TCGA-CZ-4864 TCGA-CZ-4865 TCGA-CZ-4866 TCGA-CZ-5451 TCGA-CZ-5452 TCGA-CZ-5453 
        2830           NA         1868         1929         1789           25 
TCGA-CZ-5454 TCGA-CZ-5455 TCGA-CZ-5456 TCGA-CZ-5457 TCGA-CZ-5458 TCGA-CZ-5459 
          NA           NA         1712         1683         1732         1683 
TCGA-CZ-5460 TCGA-CZ-5461 TCGA-CZ-5462 TCGA-CZ-5463 TCGA-CZ-5464 TCGA-CZ-5465 
        1430          330           NA          662         1740         1446 
TCGA-CZ-5466 TCGA-CZ-5467 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5470 TCGA-CZ-5982 
         685           NA           59          946          386         2439 
TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5986 TCGA-CZ-5987 TCGA-CZ-5988 TCGA-CZ-5989 
        2067         1997          373          435          693         1905 
TCGA-DV-5565 TCGA-DV-5566 TCGA-DV-5567 TCGA-DV-5568 TCGA-DV-5569 TCGA-DV-5573 
        1329         1398         1470          370          355         1130 
TCGA-DV-5574 TCGA-DV-5575 TCGA-DV-5576 TCGA-EU-5904 TCGA-EU-5905 TCGA-EU-5906 
         723         1729           NA          551          119          206 
TCGA-EU-5907 TCGA-G6-A5PC TCGA-GK-A6C7 
         127           NA           61 
Variable 1:'AGE':	nDistinctValues=59,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=159,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=339,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=65,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 14:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 16:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 17:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 18:'NUMBERPACKYEARSSMOKED':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=2,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 20:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 21:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 23:'BATCH.NUMBER':	nDistinctValues=15,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                         "NEOPLASM.DISEASESTAGE"      
[3] "PATHOLOGY.T.STAGE"           "PATHOLOGY.N.STAGE"          
[5] "PATHOLOGY.M.STAGE"           "GENDER"                     
[7] "KARNOFSKY.PERFORMANCE.SCORE" "NUMBERPACKYEARSSMOKED"      
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 507 columns, 1 survival variables, and 8 non-survival variables.
AGE, nv=59, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=4, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
252  66 178  11 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
252  66 178  11 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T1  T2  T3  T4 
252  66 178  11 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
252  66 178  11 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=5, binary=FALSE, numeric=TRUE
NUMBERPACKYEARSSMOKED, nv=4, binary=FALSE, numeric=TRUE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 29  4
  subtype2 15  9
  subtype3 13  1
subtype1 subtype2 subtype3 
      33       24       14 
subtype1 subtype2 subtype3 
       4        9        1 
$subtype1
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3325 
       36.82        47.21        49.58        48.59        38.99        24.69 
TCGA-A3-3326 TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3349 TCGA-A3-3351 
       37.38        23.21        48.82        31.07        45.53        29.92 
TCGA-A3-3352 TCGA-A3-3359 TCGA-A3-3362 TCGA-A3-3365 TCGA-A3-3372 TCGA-A3-3380 
       18.44        82.32        51.25        28.70        24.16        18.64 
TCGA-A3-3383 TCGA-AK-3444 TCGA-AK-3455 TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4102 
       28.31        48.36        22.45        35.90        12.30        31.30 
TCGA-B8-4151 TCGA-B8-4154 TCGA-B8-4619 TCGA-BP-4162 TCGA-BP-4164 TCGA-CJ-4634 
       27.55        24.66        17.19       101.06        32.61        59.84 
TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4644 
       75.88        58.95        11.05 

$subtype2
TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3323 
        0.53        39.16        49.08        49.02        37.15        36.36 
TCGA-A3-3335 TCGA-A3-3346 TCGA-A3-3347 TCGA-A3-3374 TCGA-A3-3378 TCGA-A3-3382 
       21.86         4.50        52.93        43.20        20.71        18.87 
TCGA-AK-3426 TCGA-B2-4098 TCGA-B8-4143 TCGA-B8-4620 TCGA-BP-4161 TCGA-BP-4163 
       29.10         1.68        23.31        25.55        90.28        93.34 
TCGA-BP-4167 TCGA-CJ-4636 TCGA-CJ-4637 TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 
       89.36        63.25        73.22        14.17        65.69        54.61 

$subtype3
TCGA-A3-3313 TCGA-A3-3328 TCGA-A3-3336 TCGA-A3-3363 TCGA-AK-3427 TCGA-AK-3440 
       24.16        45.53        34.29        10.49        84.36        57.37 
TCGA-AK-3443 TCGA-AK-3447 TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3465 TCGA-AS-3777 
       46.78        40.01        45.93        37.58        12.13        40.70 
TCGA-B2-3923 TCGA-B8-4148 
       32.61        27.16 

subtype1 subtype2 subtype3 
   11.05     0.53    10.49 
subtype1 subtype2 subtype3 
  101.06    93.34    84.36 
subtype1 subtype2 subtype3 
  32.610   38.155   38.795 
[1] "11.1 - 101.1 (32.6)" "0.5 - 93.3 (38.2)"   "10.5 - 84.4 (38.8)" 
 [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
D1V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      23        4         6        1
  subtype2       9        3         8        4
  subtype3       8        6         0        0
D1V3, multiclass
          vv
clus       T1 T2 T3
  subtype1 23  4  7
  subtype2 10  4 10
  subtype3  8  6  0
D1V4, multiclass
D1V5, binary
          cls
clus        0  1
  subtype1 18  0
  subtype2 10  3
  subtype3  7  0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   18    0
  subtype2   10    3
  subtype3    7    0
   clus
vv  subtype1 subtype2 subtype3
  0       18       10        7
  1        0        3        0
          vv
clus       M0 M1
  subtype1 33  1
  subtype2 20  4
  subtype3 14  0
D1V6, multiclass
    clus
vv   subtype1 subtype2 subtype3
  M0       33       20       14
  M1        1        4        0
D1V7, binary
          cls
clus        0  1
  subtype1 15 19
  subtype2 10 14
  subtype3  4 10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   19
  subtype2   10   14
  subtype3    4   10
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       15       10        4
  MALE         19       14       10
D1V8, continuous
[1] "Remove cluster labels:" "subtype2"              
clus
subtype2 
       1 
character(0)
D1V9, continuous

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2       0  1
  subtype1 13  2
  subtype2 28  4
  subtype3 16  8
subtype1 subtype2 subtype3 
      15       32       24 
subtype1 subtype2 subtype3 
       2        4        8 
$subtype1
TCGA-A3-3313 TCGA-A3-3328 TCGA-A3-3336 TCGA-A3-3363 TCGA-AK-3427 TCGA-AK-3440 
       24.16        45.53        34.29        10.49        84.36        57.37 
TCGA-AK-3443 TCGA-AK-3447 TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3465 TCGA-AS-3777 
       46.78        40.01        45.93        37.58        12.13        40.70 
TCGA-B2-3923 TCGA-B2-4098 TCGA-B8-4148 
       32.61         1.68        27.16 

$subtype2
TCGA-A3-3307 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3325 TCGA-A3-3326 
       47.21        49.58        48.59        38.99        24.69        37.38 
TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3349 TCGA-A3-3351 TCGA-A3-3352 
       23.21        48.82        31.07        45.53        29.92        18.44 
TCGA-A3-3359 TCGA-A3-3362 TCGA-A3-3365 TCGA-A3-3372 TCGA-A3-3380 TCGA-A3-3383 
       82.32        51.25        28.70        24.16        18.64        28.31 
TCGA-AK-3444 TCGA-AK-3455 TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4102 TCGA-B8-4151 
       48.36        22.45        35.90        12.30        31.30        27.55 
TCGA-B8-4154 TCGA-B8-4619 TCGA-BP-4162 TCGA-BP-4164 TCGA-CJ-4634 TCGA-CJ-4639 
       24.66        17.19       101.06        32.61        59.84        75.88 
TCGA-CJ-4643 TCGA-CJ-4644 
       58.95        11.05 

$subtype3
TCGA-A3-3306 TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3319 
       36.82         0.53        39.16        49.08        49.02        37.15 
TCGA-A3-3323 TCGA-A3-3335 TCGA-A3-3346 TCGA-A3-3347 TCGA-A3-3374 TCGA-A3-3378 
       36.36        21.86         4.50        52.93        43.20        20.71 
TCGA-A3-3382 TCGA-AK-3426 TCGA-B8-4143 TCGA-B8-4620 TCGA-BP-4161 TCGA-BP-4163 
       18.87        29.10        23.31        25.55        90.28        93.34 
TCGA-BP-4167 TCGA-CJ-4636 TCGA-CJ-4637 TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 
       89.36        63.25        73.22        14.17        65.69        54.61 

subtype1 subtype2 subtype3 
    1.68    11.05     0.53 
subtype1 subtype2 subtype3 
   84.36   101.06    93.34 
subtype1 subtype2 subtype3 
  37.580   31.955   38.155 
[1] "1.7 - 84.4 (37.6)"   "11.1 - 101.1 (32.0)" "0.5 - 93.3 (38.2)"  
 [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[19] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[31] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[55] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[61] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[19] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[31] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[55] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[61] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[19] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[31] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[55] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[61] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
D2V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1       9        6         0        0
  subtype2      22        4         6        1
  subtype3       9        3         8        4
D2V3, multiclass
          vv
clus       T1 T2 T3
  subtype1  9  6  0
  subtype2 22  4  7
  subtype3 10  4 10
D2V4, multiclass
D2V5, binary
          cls
clus        0  1
  subtype1  7  0
  subtype2 17  0
  subtype3 11  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7    0
  subtype2   17    0
  subtype3   11    3
   clus
vv  subtype1 subtype2 subtype3
  0        7       17       11
  1        0        0        3
          vv
clus       M0 M1
  subtype1 15  0
  subtype2 32  1
  subtype3 20  4
D2V6, multiclass
    clus
vv   subtype1 subtype2 subtype3
  M0       15       32       20
  M1        0        1        4
D2V7, binary
          cls
clus        0  1
  subtype1  5 10
  subtype2 15 18
  subtype3  9 15
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   10
  subtype2   15   18
  subtype3    9   15
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        5       15        9
  MALE         10       18       15
D2V8, continuous
[1] "Remove cluster labels:" "subtype3"              
clus
subtype3 
       1 
character(0)
D2V9, continuous

Clustering(3) Variable = CN_CNMF
D3V1, survival
          sevent
clus2        0   1
  subtype1  87  71
  subtype2 164  49
  subtype3  80  46
subtype1 subtype2 subtype3 
     158      213      126 
subtype1 subtype2 subtype3 
      71       49       46 
$subtype1
TCGA-A3-3306 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3320 
       36.82        39.16        49.08        49.02        37.15        49.58 
TCGA-A3-3325 TCGA-A3-3336 TCGA-A3-3346 TCGA-A3-3347 TCGA-A3-3352 TCGA-A3-3372 
       24.69        34.29         4.50        52.93        18.44        24.16 
TCGA-A3-3382 TCGA-AK-3425 TCGA-AK-3430 TCGA-AK-3434 TCGA-AK-3436 TCGA-AK-3445 
       18.87       109.91        15.78        68.61        67.20        42.08 
TCGA-AK-3450 TCGA-AK-3454 TCGA-AK-3461 TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 
       58.49        28.73        28.04         1.41         4.57         3.48 
TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4813 TCGA-B0-4815 TCGA-B0-4821 
       19.73        43.96         6.64         0.59        52.21        40.44 
TCGA-B0-4822 TCGA-B0-4828 TCGA-B0-4836 TCGA-B0-4838 TCGA-B0-4842 TCGA-B0-4845 
       36.53        10.09        40.70        27.42        56.68        65.29 
TCGA-B0-4848 TCGA-B0-5084 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5095 TCGA-B0-5096 
       29.03         7.30        15.09        10.95         8.05         2.24 
TCGA-B0-5098 TCGA-B0-5102 TCGA-B0-5109 TCGA-B0-5113 TCGA-B0-5116 TCGA-B0-5402 
       52.08        90.87        19.30        11.80        21.60        14.76 
TCGA-B0-5694 TCGA-B0-5701 TCGA-B0-5703 TCGA-B2-5641 TCGA-B4-5832 TCGA-B4-5835 
       15.78        56.94        39.55        21.57         0.23         0.53 
TCGA-B4-5843 TCGA-B8-4143 TCGA-B8-4620 TCGA-B8-5163 TCGA-B8-5549 TCGA-B8-5551 
        0.36        23.31        25.55        27.02         6.38         0.49 
TCGA-B8-A54I TCGA-BP-4161 TCGA-BP-4164 TCGA-BP-4174 TCGA-BP-4176 TCGA-BP-4325 
        4.93        90.28        32.61        61.78        64.27        97.45 
TCGA-BP-4331 TCGA-BP-4338 TCGA-BP-4342 TCGA-BP-4343 TCGA-BP-4351 TCGA-BP-4352 
       80.68        93.99        74.17        62.86        31.89        11.31 
TCGA-BP-4353 TCGA-BP-4756 TCGA-BP-4761 TCGA-BP-4763 TCGA-BP-4766 TCGA-BP-4768 
       12.33        12.30         5.98        41.75        48.07        13.15 
TCGA-BP-4771 TCGA-BP-4777 TCGA-BP-4781 TCGA-BP-4787 TCGA-BP-4797 TCGA-BP-4798 
        5.33        56.91        68.38        15.78        36.39        10.98 
TCGA-BP-4803 TCGA-BP-4959 TCGA-BP-4960 TCGA-BP-4962 TCGA-BP-4963 TCGA-BP-4985 
        6.71        87.45        71.41        58.68        60.30        31.30 
TCGA-BP-4986 TCGA-BP-4989 TCGA-BP-4992 TCGA-BP-5000 TCGA-BP-5010 TCGA-BP-5169 
       25.81         3.88        16.47        18.51        28.87         6.35 
TCGA-BP-5173 TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5183 TCGA-BP-5185 
        1.78        30.64        62.86        74.40        42.44        37.22 
TCGA-BP-5189 TCGA-BP-5191 TCGA-BP-5198 TCGA-BP-5201 TCGA-CJ-4635 TCGA-CJ-4638 
       27.02        31.79        19.82        31.27        46.55        14.17 
TCGA-CJ-4640 TCGA-CJ-4644 TCGA-CJ-4871 TCGA-CJ-4873 TCGA-CJ-4876 TCGA-CJ-4881 
       65.69        11.05        79.66        74.27        64.27        66.21 
TCGA-CJ-4893 TCGA-CJ-4895 TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4903 TCGA-CJ-4912 
       24.66        39.45        56.35        47.67        51.29        54.48 
TCGA-CJ-5675 TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5680 TCGA-CJ-5682 
       79.89        25.71        18.87        22.32        25.25        61.91 
TCGA-CJ-5689 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 TCGA-CJ-6032 TCGA-CJ-6033 
       53.26        60.99        53.42        75.58        83.77         7.36 
TCGA-CW-5580 TCGA-CW-5584 TCGA-CW-5591 TCGA-CW-6090 TCGA-CZ-4854 TCGA-CZ-4857 
       64.57         5.39        74.63        83.90        46.16        47.08 
TCGA-CZ-4858 TCGA-CZ-4860 TCGA-CZ-4864 TCGA-CZ-5452 TCGA-CZ-5456 TCGA-CZ-5460 
       63.88         6.77        93.04        58.82        56.28        47.01 
TCGA-CZ-5461 TCGA-CZ-5462 TCGA-CZ-5464 TCGA-CZ-5465 TCGA-CZ-5466 TCGA-CZ-5468 
       10.85        10.22        57.21        47.54        22.52         1.94 
TCGA-CZ-5469 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5987 TCGA-DV-5565 TCGA-DV-5575 
       31.10        67.96        65.65        14.30        43.69        56.84 
TCGA-EU-5907 TCGA-G6-A5PC 
        4.18         7.96 

$subtype2
TCGA-A3-3307 TCGA-A3-3322 TCGA-A3-3323 TCGA-A3-3324 TCGA-A3-3326 TCGA-A3-3331 
       47.21        48.59        36.36        38.99        37.38        48.82 
TCGA-A3-3335 TCGA-A3-3343 TCGA-A3-3351 TCGA-A3-3357 TCGA-A3-3358 TCGA-A3-3359 
       21.86        31.07        29.92        88.37        42.97        82.32 
TCGA-A3-3362 TCGA-A3-3365 TCGA-A3-3367 TCGA-A3-3370 TCGA-A3-3373 TCGA-A3-3378 
       51.25        28.70        74.63        74.76        53.29        20.71 
TCGA-A3-3380 TCGA-A3-3383 TCGA-A3-3387 TCGA-AK-3428 TCGA-AK-3429 TCGA-AK-3431 
       18.64        28.31        20.28        73.08        66.31        60.92 
TCGA-AK-3444 TCGA-AK-3451 TCGA-AK-3455 TCGA-AK-3458 TCGA-AK-3460 TCGA-B0-4693 
       48.36        48.69        22.45        38.40        31.27         2.53 
TCGA-B0-4703 TCGA-B0-4706 TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4810 TCGA-B0-4814 
        5.98         0.85         3.25        20.25        15.72         5.52 
TCGA-B0-4818 TCGA-B0-4823 TCGA-B0-4824 TCGA-B0-4827 TCGA-B0-4833 TCGA-B0-4837 
       16.77        14.93        54.48        29.10        78.44        45.30 
TCGA-B0-4841 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 TCGA-B0-4945 TCGA-B0-5075 
        6.71        39.45        26.07         2.27        70.52        20.94 
TCGA-B0-5077 TCGA-B0-5085 TCGA-B0-5088 TCGA-B0-5099 TCGA-B0-5104 TCGA-B0-5110 
       43.30        25.32        18.51        15.95        90.48        35.90 
TCGA-B0-5115 TCGA-B0-5119 TCGA-B0-5120 TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5690 
       26.20         1.94        16.21        18.21        21.44        79.17 
TCGA-B0-5691 TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5697 
      112.80        48.89       101.13        46.68        56.78        60.33 
TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5705 TCGA-B0-5706 TCGA-B0-5710 TCGA-B0-5711 
       84.92        90.12       120.59        79.36        47.97        96.36 
TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 
       61.32        97.41        35.90        12.30        21.30        31.30 
TCGA-B2-5633 TCGA-B2-5639 TCGA-B2-A4SR TCGA-B4-5377 TCGA-B4-5834 TCGA-B4-5836 
       11.77        13.71        16.67         9.57         1.25         4.64 
TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 TCGA-B8-4153 TCGA-B8-4154 
        0.23        16.80        27.16        27.55        25.05        24.66 
TCGA-B8-5159 TCGA-B8-5162 TCGA-B8-5164 TCGA-B8-5552 TCGA-B8-5553 TCGA-B8-A54J 
       23.74         1.18         0.85        12.89        14.30         2.17 
TCGA-BP-4158 TCGA-BP-4159 TCGA-BP-4160 TCGA-BP-4162 TCGA-BP-4163 TCGA-BP-4165 
      111.02        85.51        94.72       101.06        93.34        99.85 
TCGA-BP-4166 TCGA-BP-4169 TCGA-BP-4170 TCGA-BP-4326 TCGA-BP-4327 TCGA-BP-4329 
        0.43        23.05        77.03        53.42         3.58        27.78 
TCGA-BP-4330 TCGA-BP-4332 TCGA-BP-4335 TCGA-BP-4340 TCGA-BP-4341 TCGA-BP-4344 
       62.07        37.25        15.16        18.48        52.24        54.77 
TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4349 TCGA-BP-4355 TCGA-BP-4758 TCGA-BP-4765 
       49.08        44.94        12.23        31.33        72.59        71.80 
TCGA-BP-4774 TCGA-BP-4776 TCGA-BP-4789 TCGA-BP-4801 TCGA-BP-4807 TCGA-BP-4965 
       61.97        13.51        48.95        36.95         6.94        61.51 
TCGA-BP-4969 TCGA-BP-4972 TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4977 TCGA-BP-4981 
       58.98        49.38         7.23        47.11        14.93        36.07 
TCGA-BP-4982 TCGA-BP-4987 TCGA-BP-4991 TCGA-BP-4993 TCGA-BP-4995 TCGA-BP-4999 
       33.34        36.95        46.45         5.82        45.07        41.62 
TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5006 TCGA-BP-5007 TCGA-BP-5008 TCGA-BP-5168 
       38.70        37.02        27.62        37.48        35.21        48.10 
TCGA-BP-5170 TCGA-BP-5174 TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5181 TCGA-BP-5182 
       79.30        74.20        52.27         9.63        49.15        38.30 
TCGA-BP-5184 TCGA-BP-5186 TCGA-BP-5187 TCGA-BP-5190 TCGA-BP-5192 TCGA-BP-5194 
       37.25        22.78        13.35        33.24        23.47        13.41 
TCGA-BP-5195 TCGA-BP-5199 TCGA-BP-5200 TCGA-BP-5202 TCGA-CJ-4634 TCGA-CJ-4636 
       24.62        44.55        34.95         0.95        59.84        63.25 
TCGA-CJ-4639 TCGA-CJ-4642 TCGA-CJ-4643 TCGA-CJ-4868 TCGA-CJ-4870 TCGA-CJ-4874 
       75.88        53.52        58.95        21.24        49.25        75.06 
TCGA-CJ-4878 TCGA-CJ-4884 TCGA-CJ-4885 TCGA-CJ-4886 TCGA-CJ-4887 TCGA-CJ-4892 
       71.87        57.83        69.86        64.18        30.64        50.01 
TCGA-CJ-4894 TCGA-CJ-4899 TCGA-CJ-4902 TCGA-CJ-4904 TCGA-CJ-4908 TCGA-CJ-4916 
       27.65        50.24        49.97        58.92        50.33        45.14 
TCGA-CJ-5672 TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CW-5581 TCGA-CW-5583 TCGA-CW-5585 
       72.00        62.10        73.35        92.02        81.83        85.78 
TCGA-CW-5587 TCGA-CW-5589 TCGA-CW-6088 TCGA-CZ-4853 TCGA-CZ-4856 TCGA-CZ-4859 
       73.18        78.15       105.93        25.45         0.59        58.75 
TCGA-CZ-4861 TCGA-CZ-4865 TCGA-CZ-5451 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 
       14.66         5.46        63.42         0.82        23.74        18.44 
TCGA-CZ-5458 TCGA-CZ-5459 TCGA-CZ-5463 TCGA-CZ-5467 TCGA-CZ-5982 TCGA-CZ-5986 
       56.94        55.33        21.76         2.40        80.19        12.26 
TCGA-CZ-5988 TCGA-CZ-5989 TCGA-DV-5566 TCGA-DV-5568 TCGA-DV-5569 TCGA-DV-5573 
       22.78        62.63        45.96        12.16        11.67        37.15 
TCGA-EU-5904 TCGA-EU-5906 TCGA-GK-A6C7 
       18.12         6.77         2.01 

$subtype3
TCGA-A3-3308 TCGA-A3-3313 TCGA-A3-3349 TCGA-A3-3363 TCGA-A3-3374 TCGA-A3-3376 
        0.53        24.16        45.53        10.49        43.20        35.18 
TCGA-A3-3385 TCGA-AK-3426 TCGA-AK-3427 TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3443 
       65.52        29.10        84.36        72.07        57.37        46.78 
TCGA-AK-3447 TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3465 TCGA-AS-3777 TCGA-B0-4688 
       40.01        45.93        37.58        12.13        40.70         3.32 
TCGA-B0-4696 TCGA-B0-4697 TCGA-B0-4698 TCGA-B0-4699 TCGA-B0-4700 TCGA-B0-4701 
       28.47        19.00         1.38         3.62        65.10         7.82 
TCGA-B0-4710 TCGA-B0-4811 TCGA-B0-4816 TCGA-B0-4817 TCGA-B0-4819 TCGA-B0-4834 
        3.16        46.59        45.07        33.50         6.02        68.71 
TCGA-B0-4839 TCGA-B0-4843 TCGA-B0-4844 TCGA-B0-4852 TCGA-B0-5080 TCGA-B0-5081 
       53.88        11.64        10.29        36.85        11.24        11.90 
TCGA-B0-5097 TCGA-B0-5100 TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5108 TCGA-B0-5117 
       21.86        62.89        52.54        30.48        29.95        17.59 
TCGA-B0-5400 TCGA-B0-5702 TCGA-B0-5709 TCGA-B0-5712 TCGA-B2-3923 TCGA-B2-4098 
       37.22        52.77       102.48        89.49        32.61         1.68 
TCGA-B2-5635 TCGA-B4-5378 TCGA-B4-5838 TCGA-B8-4619 TCGA-B8-4621 TCGA-B8-4622 
       10.36         5.75         5.46        17.19        25.91        23.01 
TCGA-B8-5158 TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5546 TCGA-B8-5550 TCGA-BP-4167 
       20.91        24.23        17.16        16.60        14.27        89.36 
TCGA-BP-4173 TCGA-BP-4177 TCGA-BP-4334 TCGA-BP-4337 TCGA-BP-4354 TCGA-BP-4759 
       62.24        54.90        21.21         0.07        33.99        77.98 
TCGA-BP-4760 TCGA-BP-4762 TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4775 TCGA-BP-4782 
       77.62        44.15        61.68        10.82        60.59        11.64 
TCGA-BP-4784 TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4799 TCGA-BP-4804 TCGA-BP-4961 
       60.95        36.53        20.38        37.25        47.97        63.62 
TCGA-BP-4964 TCGA-BP-4967 TCGA-BP-4968 TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4973 
       61.22         6.74        57.40        14.24        48.89        45.50 
TCGA-BP-4976 TCGA-BP-4983 TCGA-BP-4988 TCGA-BP-4994 TCGA-BP-4998 TCGA-BP-5009 
       53.65        46.45        27.22        43.00        30.64        36.23 
TCGA-BP-5196 TCGA-CJ-4637 TCGA-CJ-4641 TCGA-CJ-4869 TCGA-CJ-4872 TCGA-CJ-4875 
       33.47        73.22        54.61        83.97        47.18        77.36 
TCGA-CJ-4882 TCGA-CJ-4888 TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4891 TCGA-CJ-4897 
       61.91        51.52        63.98        68.55        26.93        59.44 
TCGA-CJ-4905 TCGA-CJ-4907 TCGA-CJ-4913 TCGA-CJ-4918 TCGA-CJ-4920 TCGA-CJ-4923 
       49.18        49.28        38.56         3.06         4.57        18.81 
TCGA-CJ-5671 TCGA-CJ-5676 TCGA-CJ-5681 TCGA-CJ-5686 TCGA-CJ-6031 TCGA-CW-5588 
       63.88        84.66        18.15        67.00        62.66        66.28 
TCGA-CW-6087 TCGA-CW-6093 TCGA-CW-6097 TCGA-CZ-4862 TCGA-CZ-4863 TCGA-CZ-4866 
        1.35       103.43        18.74        60.59        63.39        61.41 
TCGA-CZ-5457 TCGA-CZ-5470 TCGA-DV-5567 TCGA-DV-5574 TCGA-DV-5576 TCGA-EU-5905 
       55.33        12.69        48.33        23.77        23.90         3.91 

subtype1 subtype2 subtype3 
    0.23     0.23     0.07 
subtype1 subtype2 subtype3 
  109.91   120.59   103.43 
subtype1 subtype2 subtype3 
  33.450   37.250   37.415 
[1] "0.2 - 109.9 (33.5)" "0.2 - 120.6 (37.2)" "0.1 - 103.4 (37.4)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [55] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [97] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[187] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[211] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[223] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[229] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[235] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[241] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[247] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[253] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[259] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[271] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[277] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[283] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[289] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[295] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[301] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[307] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[313] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[319] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[331] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[337] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[343] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[349] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[355] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[361] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[367] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[373] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[379] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[385] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[391] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[397] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[403] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[409] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[415] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[421] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[427] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[433] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[439] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[445] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[451] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[457] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[463] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[469] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[475] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[481] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[487] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[493] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [55] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [97] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[187] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[211] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[223] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[229] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[235] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[241] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[247] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[253] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[259] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[271] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[277] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[283] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[289] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[295] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[301] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[307] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[313] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[319] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[331] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[337] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[343] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[349] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[355] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[361] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[367] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[373] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[379] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[385] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[391] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[397] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[403] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[409] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[415] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[421] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[427] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[433] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[439] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[445] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[451] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[457] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[463] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[469] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[475] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[481] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[487] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[493] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [55] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [97] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[187] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[211] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[223] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[229] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[235] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[241] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[247] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[253] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[259] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[271] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[277] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[283] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[289] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[295] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[301] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[307] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[313] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[319] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[331] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[337] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[343] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[349] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[355] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[361] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[367] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[373] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[379] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[385] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[391] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[397] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[403] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[409] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[415] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[421] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[427] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[433] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[439] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[445] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[451] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[457] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[463] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[469] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[475] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[481] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[487] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[493] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
D3V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      57       17        45       39
  subtype2     125       27        45       17
  subtype3      57       11        35       23
D3V3, multiclass
          vv
clus        T1  T2  T3  T4
  subtype1  62  21  71   4
  subtype2 125  30  58   1
  subtype3  58  15  47   6
D3V4, multiclass
D3V5, binary
          cls
clus         0   1
  subtype1  69   9
  subtype2 103   2
  subtype3  57   7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   69    9
  subtype2  103    2
  subtype3   57    7
   clus
vv  subtype1 subtype2 subtype3
  0       69      103       57
  1        9        2        7
          vv
clus        M0  M1  MX
  subtype1 118  39   1
  subtype2 194  18   2
  subtype3 105  21   0
D3V6, multiclass
D3V7, binary
          cls
clus         0   1
  subtype1  40 118
  subtype2  86 128
  subtype3  47  79
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   40  118
  subtype2   86  128
  subtype3   47   79
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       40       86       47
  MALE        118      128       79
D3V8, continuous
D3V9, continuous
[1] "Remove cluster labels:" "subtype1"               "subtype2"              
[4] "subtype3"              
clus
subtype1 subtype2 subtype3 
       1        2        2 
character(0)

Clustering(4) Variable = METHLYATION_CNMF
D4V1, survival
          sevent
clus2       0  1
  subtype1 48 49
  subtype2 94 20
  subtype3 46 28
subtype1 subtype2 subtype3 
      97      114       74 
subtype1 subtype2 subtype3 
      49       20       28 
$subtype1
TCGA-A3-3357 TCGA-A3-3367 TCGA-A3-3387 TCGA-AK-3434 TCGA-AK-3445 TCGA-B0-4688 
       88.37        74.63        20.28        68.61        42.08         3.32 
TCGA-B0-4691 TCGA-B0-4693 TCGA-B0-4696 TCGA-B0-4701 TCGA-B0-4703 TCGA-B0-4706 
        4.57         2.53        28.47         7.82         5.98         0.85 
TCGA-B0-4707 TCGA-B0-4710 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4714 TCGA-B0-4718 
       19.73         3.16        43.96         6.64         3.25        20.25 
TCGA-B0-4810 TCGA-B0-4811 TCGA-B0-4813 TCGA-B0-4814 TCGA-B0-4821 TCGA-B0-4822 
       15.72        46.59         0.59         5.52        40.44        36.53 
TCGA-B0-4827 TCGA-B0-4828 TCGA-B0-4843 TCGA-B0-4844 TCGA-B0-4845 TCGA-B0-4848 
       29.10        10.09        11.64        10.29        65.29        29.03 
TCGA-B0-5094 TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5099 TCGA-B0-5100 TCGA-B0-5106 
       10.95         2.24        21.86        15.95        62.89        52.54 
TCGA-B0-5107 TCGA-B0-5116 TCGA-B0-5121 TCGA-B0-5402 TCGA-B0-5694 TCGA-B0-5696 
       30.48        21.60        18.21        14.76        15.78        56.78 
TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5701 TCGA-B0-5706 TCGA-B0-5712 TCGA-B4-5838 
       84.92        90.12        56.94        79.36        89.49         5.46 
TCGA-B8-4153 TCGA-B8-4622 TCGA-B8-5158 TCGA-BP-5010 TCGA-BP-5169 TCGA-BP-5178 
       25.05        23.01        20.91        28.87         6.35        62.86 
TCGA-BP-5180 TCGA-BP-5189 TCGA-BP-5190 TCGA-BP-5198 TCGA-BP-5201 TCGA-CJ-4901 
       74.40        27.02        33.24        19.82        31.27        47.67 
TCGA-CJ-4902 TCGA-CJ-4907 TCGA-CJ-4912 TCGA-CJ-4913 TCGA-CJ-4920 TCGA-CJ-5671 
       49.97        49.28        54.48        38.56         4.57        63.88 
TCGA-CJ-5675 TCGA-CJ-5676 TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5680 
       79.89        84.66        25.71        18.87        22.32        25.25 
TCGA-CJ-5682 TCGA-CJ-5689 TCGA-CJ-6027 TCGA-CJ-6030 TCGA-CJ-6033 TCGA-CW-5580 
       61.91        53.26        60.99        75.58         7.36        64.57 
TCGA-CW-5584 TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6090 TCGA-CZ-4853 TCGA-CZ-4866 
        5.39        35.34        74.63        83.90        25.45        61.41 
TCGA-CZ-5456 TCGA-CZ-5457 TCGA-CZ-5460 TCGA-CZ-5461 TCGA-CZ-5464 TCGA-CZ-5465 
       56.28        55.33        47.01        10.85        57.21        47.54 
TCGA-CZ-5466 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5470 TCGA-CZ-5985 TCGA-CZ-5987 
       22.52         1.94        31.10        12.69        65.65        14.30 
TCGA-EU-5907 
        4.18 

$subtype2
TCGA-A3-3358 TCGA-A3-3370 TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3385 TCGA-AK-3428 
       42.97        74.76        53.29        35.18        65.52        73.08 
TCGA-AK-3431 TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3450 TCGA-AK-3453 TCGA-AK-3454 
       60.92        72.07        57.37        58.49        45.93        28.73 
TCGA-AK-3458 TCGA-AK-3460 TCGA-AK-3461 TCGA-B0-4818 TCGA-B0-4823 TCGA-B0-4824 
       38.40        31.27        28.04        16.77        14.93        54.48 
TCGA-B0-4841 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-5102 
        6.71        39.45        26.07         2.27        36.85        90.87 
TCGA-B0-5104 TCGA-B0-5110 TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5117 TCGA-B0-5119 
       90.48        35.90        11.80        26.20        17.59         1.94 
TCGA-B0-5120 TCGA-B0-5399 TCGA-B0-5690 TCGA-B0-5691 TCGA-B0-5693 TCGA-B0-5695 
       16.21        21.44        79.17       112.80       101.13        46.68 
TCGA-B0-5700 TCGA-B0-5703 TCGA-B0-5705 TCGA-B0-5707 TCGA-B0-5710 TCGA-B0-5711 
       35.57        39.55       120.59        92.98        47.97        96.36 
TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-3924 TCGA-B2-4101 TCGA-B2-5639 TCGA-B2-A4SR 
       61.32        97.41        35.90        21.30        13.71        16.67 
TCGA-B4-5377 TCGA-B4-5834 TCGA-B4-5836 TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 
        9.57         1.25         4.64         0.36         0.23        16.80 
TCGA-B8-5159 TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5546 TCGA-B8-5549 TCGA-B8-5552 
       23.74        24.23        17.16        16.60         6.38        12.89 
TCGA-B8-5553 TCGA-BP-4801 TCGA-BP-4993 TCGA-BP-5168 TCGA-BP-5173 TCGA-BP-5174 
       14.30        36.95         5.82        48.10         1.78        74.20 
TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5181 TCGA-BP-5183 TCGA-BP-5184 TCGA-BP-5185 
       52.27         9.63        49.15        42.44        37.25        37.22 
TCGA-BP-5186 TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5199 TCGA-BP-5200 TCGA-BP-5202 
       22.78        23.47        13.41        44.55        34.95         0.95 
TCGA-CJ-4897 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 TCGA-CJ-4908 TCGA-CJ-5681 
       59.44        51.29        58.92        49.18        50.33        18.15 
TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-6032 TCGA-CW-5581 TCGA-CW-5583 TCGA-CW-5585 
       62.10        73.35        83.77        92.02        81.83        85.78 
TCGA-CW-5589 TCGA-CW-6088 TCGA-CW-6093 TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4864 
       78.15       105.93       103.43         0.59        58.75        93.04 
TCGA-CZ-5451 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 TCGA-CZ-5459 TCGA-CZ-5463 
       63.42         0.82        23.74        18.44        55.33        21.76 
TCGA-CZ-5467 TCGA-CZ-5982 TCGA-CZ-5986 TCGA-CZ-5988 TCGA-CZ-5989 TCGA-DV-5565 
        2.40        80.19        12.26        22.78        62.63        43.69 
TCGA-DV-5566 TCGA-DV-5569 TCGA-DV-5573 TCGA-DV-5575 TCGA-EU-5904 TCGA-EU-5906 
       45.96        11.67        37.15        56.84        18.12         6.77 

$subtype3
TCGA-AK-3425 TCGA-B0-4690 TCGA-B0-4694 TCGA-B0-4697 TCGA-B0-4698 TCGA-B0-4699 
      109.91         1.41         3.48        19.00         1.38         3.62 
TCGA-B0-4700 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 TCGA-B0-4819 TCGA-B0-4842 
       65.10        52.21        45.07        33.50         6.02        56.68 
TCGA-B0-4945 TCGA-B0-5080 TCGA-B0-5083 TCGA-B0-5092 TCGA-B0-5095 TCGA-B0-5098 
       70.52        11.24        34.36        15.09         8.05        52.08 
TCGA-B0-5108 TCGA-B0-5109 TCGA-B0-5400 TCGA-B0-5692 TCGA-B0-5697 TCGA-B0-5702 
       29.95        19.30        37.22        48.89        60.33        52.77 
TCGA-B0-5709 TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5636 TCGA-B2-5641 TCGA-B4-5378 
      102.48        11.77        10.36        30.21        21.57         5.75 
TCGA-B4-5832 TCGA-B4-5835 TCGA-B8-4621 TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5164 
        0.23         0.53        25.91         1.18        27.02         0.85 
TCGA-B8-5550 TCGA-B8-5551 TCGA-BP-4177 TCGA-BP-4760 TCGA-BP-4770 TCGA-BP-4782 
       14.27         0.49        54.90        77.62        10.82        11.64 
TCGA-BP-4795 TCGA-BP-5170 TCGA-BP-5175 TCGA-BP-5182 TCGA-BP-5187 TCGA-BP-5191 
       20.38        79.30        30.64        38.30        13.35        31.79 
TCGA-BP-5195 TCGA-BP-5196 TCGA-CJ-4869 TCGA-CJ-4882 TCGA-CJ-4916 TCGA-CJ-4918 
       24.62        33.47        83.97        61.91        45.14         3.06 
TCGA-CJ-4923 TCGA-CJ-5672 TCGA-CJ-5686 TCGA-CJ-6028 TCGA-CJ-6031 TCGA-CW-5587 
       18.81        72.00        67.00        53.42        62.66        73.18 
TCGA-CW-5588 TCGA-CW-6087 TCGA-CW-6097 TCGA-CZ-4863 TCGA-CZ-4865 TCGA-CZ-5452 
       66.28         1.35        18.74        63.39         5.46        58.82 
TCGA-CZ-5458 TCGA-CZ-5462 TCGA-CZ-5984 TCGA-DV-5567 TCGA-DV-5568 TCGA-DV-5574 
       56.94        10.22        67.96        48.33        12.16        23.77 
TCGA-DV-5576 TCGA-EU-5905 
       23.90         3.91 

subtype1 subtype2 subtype3 
    0.59     0.23     0.23 
subtype1 subtype2 subtype3 
   90.12   120.59   109.91 
subtype1 subtype2 subtype3 
  28.870   37.185   28.485 
[1] "0.6 - 90.1 (28.9)"  "0.2 - 120.6 (37.2)" "0.2 - 109.9 (28.5)"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [91] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [97] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[103] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[157] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[187] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[193] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[217] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[223] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[229] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[247] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[253] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[259] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[265] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[277] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[283] "subtype3" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [91] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [97] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[103] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[157] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[187] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[193] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[217] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[223] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[229] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[247] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[253] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[259] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[265] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[277] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[283] "subtype3" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [91] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [97] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[103] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[157] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[187] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[193] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[217] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[223] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[229] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[247] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[253] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[259] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[265] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[277] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[283] "subtype3" "subtype2" "subtype1"
D4V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      19        9        39       30
  subtype2      76       16        12       10
  subtype3      35        3        22       14
D4V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 20 14 60  3
  subtype2 76 19 19  0
  subtype3 37  4 28  5
D4V4, multiclass
D4V5, binary
          cls
clus        0  1
  subtype1 41  5
  subtype2 51  1
  subtype3 35  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   41    5
  subtype2   51    1
  subtype3   35    3
   clus
vv  subtype1 subtype2 subtype3
  0       41       51       35
  1        5        1        3
          vv
clus        M0  M1
  subtype1  68  29
  subtype2 103  11
  subtype3  62  12
D4V6, multiclass
    clus
vv   subtype1 subtype2 subtype3
  M0       68      103       62
  M1       29       11       12
D4V7, binary
          cls
clus        0  1
  subtype1 20 77
  subtype2 51 63
  subtype3 25 49
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   20   77
  subtype2   51   63
  subtype3   25   49
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       20       51       25
  MALE         77       63       49
D4V8, continuous
D4V9, continuous
[1] "Remove cluster labels:" "subtype1"               "subtype2"              
[4] "subtype3"              
clus
subtype1 subtype2 subtype3 
       1        1        2 
character(0)

Clustering(5) Variable = RPPA_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 74 27
  subtype2 54 36
  subtype3 62 24
  subtype4 52 24
  subtype5 36  8
  subtype6 18 39
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
     101       90       86       76       44       57 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
      27       36       24       24        8       39 
$subtype1
TCGA-A3-3306 TCGA-A3-3320 TCGA-A3-3329 TCGA-A3-3352 TCGA-A3-3367 TCGA-A3-3380 
       36.82        49.58        23.21        18.44        74.63        18.64 
TCGA-A3-3383 TCGA-A3-3385 TCGA-AK-3434 TCGA-B0-4706 TCGA-B0-4811 TCGA-B0-4816 
       28.31        65.52        68.61         0.85        46.59        45.07 
TCGA-B0-4818 TCGA-B0-4824 TCGA-B0-4833 TCGA-B0-4841 TCGA-B0-4845 TCGA-B0-4846 
       16.77        54.48        78.44         6.71        65.29        39.45 
TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-5085 TCGA-B0-5102 TCGA-B0-5110 TCGA-B0-5115 
        2.27        36.85        25.32        90.87        35.90        26.20 
TCGA-B0-5119 TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5693 
        1.94        18.21        21.44        14.76        79.17       101.13 
TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5705 TCGA-B0-5711 
       15.78        46.68        84.92        90.12       120.59        96.36 
TCGA-B0-5712 TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-4099 TCGA-B2-4101 TCGA-B4-5377 
       89.49        61.32        97.41        12.30        21.30         9.57 
TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4153 TCGA-BP-4158 TCGA-BP-4161 TCGA-BP-4164 
        0.36         0.23        25.05       111.02        90.28        32.61 
TCGA-BP-4325 TCGA-BP-4327 TCGA-BP-4329 TCGA-BP-4330 TCGA-BP-4335 TCGA-BP-4342 
       97.45         3.58        27.78        62.07        15.16        74.17 
TCGA-BP-4758 TCGA-BP-4759 TCGA-BP-4768 TCGA-BP-4774 TCGA-BP-4776 TCGA-BP-4961 
       72.59        77.98        13.15        61.97        13.51        63.62 
TCGA-BP-4975 TCGA-BP-4981 TCGA-BP-4991 TCGA-BP-4995 TCGA-BP-4999 TCGA-BP-5001 
       47.11        36.07        46.45        45.07        41.62        38.70 
TCGA-BP-5007 TCGA-BP-5168 TCGA-BP-5170 TCGA-BP-5176 TCGA-BP-5180 TCGA-BP-5181 
       37.48        48.10        79.30        52.27        74.40        49.15 
TCGA-BP-5192 TCGA-BP-5201 TCGA-CJ-4634 TCGA-CJ-4870 TCGA-CJ-4871 TCGA-CJ-4874 
       23.47        31.27        59.84        49.25        79.66        75.06 
TCGA-CJ-4878 TCGA-CJ-4897 TCGA-CJ-4904 TCGA-CJ-4916 TCGA-CJ-5675 TCGA-CJ-5676 
       71.87        59.44        58.92        45.14        79.89        84.66 
TCGA-CJ-5678 TCGA-CJ-5680 TCGA-CJ-5683 TCGA-CW-5583 TCGA-CW-5585 TCGA-CW-5587 
       18.87        25.25        62.10        81.83        85.78        73.18 
TCGA-CZ-4859 TCGA-CZ-5451 TCGA-CZ-5455 TCGA-CZ-5465 TCGA-CZ-5467 TCGA-CZ-5982 
       58.75        63.42        18.44        47.54         2.40        80.19 
TCGA-CZ-5986 TCGA-CZ-5989 TCGA-DV-5565 TCGA-DV-5575 TCGA-EU-5906 
       12.26        62.63        43.69        56.84         6.77 

$subtype2
TCGA-A3-3308 TCGA-A3-3316 TCGA-A3-3349 TCGA-A3-3365 TCGA-A3-3376 TCGA-AK-3451 
        0.53        49.08        45.53        28.70        35.18        48.69 
TCGA-B0-4688 TCGA-B0-4697 TCGA-B0-4700 TCGA-B0-4701 TCGA-B0-4703 TCGA-B0-4815 
        3.32        19.00        65.10         7.82         5.98        52.21 
TCGA-B0-4819 TCGA-B0-4823 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4843 TCGA-B0-5080 
        6.02        14.93        40.70        45.30        11.64        11.24 
TCGA-B0-5088 TCGA-B0-5095 TCGA-B0-5097 TCGA-B0-5100 TCGA-B0-5104 TCGA-B0-5106 
       18.51         8.05        21.86        62.89        90.48        52.54 
TCGA-B0-5108 TCGA-B0-5120 TCGA-B0-5706 TCGA-B0-5710 TCGA-B2-5636 TCGA-B4-5378 
       29.95        16.21        79.36        47.97        30.21         5.75 
TCGA-B4-5834 TCGA-B4-5836 TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5545 TCGA-B8-5551 
        1.25         4.64         1.18        27.02        17.16         0.49 
TCGA-BP-4169 TCGA-BP-4337 TCGA-BP-4345 TCGA-BP-4349 TCGA-BP-4355 TCGA-BP-4762 
       23.05         0.07        49.84        12.23        31.33        44.15 
TCGA-BP-4765 TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4784 TCGA-BP-4804 TCGA-BP-4960 
       71.80        61.68        10.82        60.95        47.97        71.41 
TCGA-BP-4962 TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4974 TCGA-BP-4998 TCGA-BP-5010 
       58.68        14.24        48.89         7.23        30.64        28.87 
TCGA-BP-5177 TCGA-BP-5196 TCGA-BP-5199 TCGA-BP-5200 TCGA-CJ-4868 TCGA-CJ-4872 
        9.63        33.47        44.55        34.95        21.24        47.18 
TCGA-CJ-4882 TCGA-CJ-4886 TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4892 TCGA-CJ-4894 
       61.91        64.18        63.98        68.55        50.01        27.65 
TCGA-CJ-4895 TCGA-CJ-4899 TCGA-CJ-4900 TCGA-CJ-4902 TCGA-CJ-4905 TCGA-CJ-4908 
       39.45        50.24        56.35        49.97        49.18        50.33 
TCGA-CJ-4918 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5682 TCGA-CJ-5684 TCGA-CJ-5686 
        3.06        18.81        63.88        61.91        73.35        67.00 
TCGA-CJ-5689 TCGA-CJ-6033 TCGA-CW-6088 TCGA-CW-6090 TCGA-CW-6097 TCGA-CZ-4856 
       53.26         7.36       105.93        83.90        18.74         0.59 
TCGA-CZ-4860 TCGA-CZ-5454 TCGA-CZ-5988 TCGA-DV-5567 TCGA-DV-5574 TCGA-EU-5904 
        6.77        23.74        22.78        48.33        23.77        18.12 

$subtype3
TCGA-A3-3311 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3323 TCGA-A3-3335 TCGA-A3-3336 
       39.16        49.02        37.15        36.36        21.86        34.29 
TCGA-A3-3347 TCGA-A3-3351 TCGA-A3-3372 TCGA-A3-3387 TCGA-B0-4838 TCGA-B0-4839 
       52.93        29.92        24.16        20.28        27.42        53.88 
TCGA-B0-4847 TCGA-B0-4945 TCGA-B0-5075 TCGA-B0-5081 TCGA-B0-5691 TCGA-B0-5692 
       26.07        70.52        20.94        11.90       112.80        48.89 
TCGA-B0-5697 TCGA-B0-5701 TCGA-B0-5707 TCGA-B2-4102 TCGA-B2-5633 TCGA-B2-5635 
       60.33        56.94        92.98        31.30        11.77        10.36 
TCGA-B2-5639 TCGA-B2-5641 TCGA-B4-5832 TCGA-B4-5835 TCGA-B8-4143 TCGA-B8-5159 
       13.71        21.57         0.23         0.53        23.31        23.74 
TCGA-B8-5164 TCGA-B8-5546 TCGA-B8-5550 TCGA-B8-5553 TCGA-BP-4343 TCGA-BP-4346 
        0.85        16.60        14.27        14.30        62.86        49.08 
TCGA-BP-4351 TCGA-BP-4756 TCGA-BP-4803 TCGA-BP-4963 TCGA-BP-4968 TCGA-BP-4973 
       31.89        12.30         6.71        60.30        57.40        45.50 
TCGA-BP-4977 TCGA-BP-5189 TCGA-BP-5190 TCGA-BP-5191 TCGA-BP-5195 TCGA-CJ-4635 
       14.93        27.02        33.24        31.79        24.62        46.55 
TCGA-CJ-4640 TCGA-CJ-4873 TCGA-CJ-4876 TCGA-CJ-4884 TCGA-CJ-4887 TCGA-CJ-4888 
       65.69        74.27        64.27        57.83        30.64        51.52 
TCGA-CJ-4893 TCGA-CJ-4903 TCGA-CJ-4907 TCGA-CJ-4912 TCGA-CJ-5672 TCGA-CJ-5677 
       24.66        51.29        49.28        54.48        72.00        25.71 
TCGA-CJ-6030 TCGA-CW-5580 TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5588 TCGA-CW-5590 
       75.58        64.57        92.02         5.39        66.28        35.34 
TCGA-CW-5591 TCGA-CZ-4853 TCGA-CZ-4862 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-4866 
       74.63        25.45        60.59        63.39        93.04        61.41 
TCGA-CZ-5452 TCGA-CZ-5456 TCGA-CZ-5458 TCGA-CZ-5461 TCGA-CZ-5463 TCGA-CZ-5464 
       58.82        56.28        56.94        10.85        21.76        57.21 
TCGA-CZ-5466 TCGA-CZ-5469 TCGA-CZ-5470 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-DV-5573 
       22.52        31.10        12.69        67.96        65.65        37.15 
TCGA-EU-5905 TCGA-EU-5907 
        3.91         4.18 

$subtype4
TCGA-A3-3313 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3326 TCGA-A3-3346 TCGA-A3-3357 
       24.16        48.59        38.99        37.38         4.50        88.37 
TCGA-A3-3362 TCGA-A3-3363 TCGA-A3-3373 TCGA-A3-3374 TCGA-A3-3378 TCGA-A3-3382 
       51.25        10.49        53.29        43.20        20.71        18.87 
TCGA-AK-3427 TCGA-AK-3428 TCGA-AK-3444 TCGA-AK-3456 TCGA-B0-4699 TCGA-B0-4714 
       84.36        73.08        48.36        37.58         3.62         3.25 
TCGA-B0-4817 TCGA-B0-4834 TCGA-B0-5077 TCGA-B0-5084 TCGA-B0-5096 TCGA-B0-5098 
       33.50        68.71        43.30         7.30         2.24        52.08 
TCGA-B0-5109 TCGA-B0-5117 TCGA-B0-5400 TCGA-B0-5700 TCGA-B0-5702 TCGA-B0-5703 
       19.30        17.59        37.22        35.57        52.77        39.55 
TCGA-B2-3923 TCGA-B2-3924 TCGA-B2-4098 TCGA-B8-4146 TCGA-B8-4620 TCGA-B8-4621 
       32.61        35.90         1.68        16.80        25.55        25.91 
TCGA-B8-5549 TCGA-BP-4165 TCGA-BP-4170 TCGA-BP-4174 TCGA-BP-4332 TCGA-BP-4334 
        6.38        99.85        77.03        61.78        37.25        21.21 
TCGA-BP-4338 TCGA-BP-4341 TCGA-BP-4353 TCGA-BP-4766 TCGA-BP-4777 TCGA-BP-4799 
       93.99        52.24        12.33        48.07        56.91        37.25 
TCGA-BP-4801 TCGA-BP-4959 TCGA-BP-4964 TCGA-BP-4967 TCGA-BP-4969 TCGA-BP-4972 
       36.95        87.45        61.22         6.74        58.98        49.38 
TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4993 TCGA-BP-4994 TCGA-BP-5004 TCGA-BP-5169 
       27.22         3.88         5.82        43.00        37.02         6.35 
TCGA-BP-5178 TCGA-BP-5185 TCGA-BP-5187 TCGA-BP-5194 TCGA-BP-5198 TCGA-CJ-4885 
       62.86        37.22        13.35        13.41        19.82        69.86 
TCGA-CJ-4901 TCGA-CJ-5681 TCGA-CJ-6028 TCGA-CJ-6031 TCGA-CZ-4861 TCGA-CZ-4865 
       47.67        18.15        53.42        62.66        14.66         5.46 
TCGA-CZ-5453 TCGA-CZ-5457 TCGA-CZ-5459 TCGA-CZ-5462 
        0.82        55.33        55.33        10.22 

$subtype5
TCGA-A3-3331 TCGA-A3-3370 TCGA-B0-4693 TCGA-B0-4710 TCGA-B0-5099 TCGA-B0-5113 
       48.82        74.76         2.53         3.16        15.95        11.80 
TCGA-B0-5116 TCGA-B8-5165 TCGA-B8-5552 TCGA-BP-4331 TCGA-BP-4344 TCGA-BP-4347 
       21.60        24.23        12.89        80.68        54.77        44.94 
TCGA-BP-4760 TCGA-BP-4763 TCGA-BP-4775 TCGA-BP-4781 TCGA-BP-4789 TCGA-BP-4790 
       77.62        41.75        60.59        68.38        48.95        36.53 
TCGA-BP-4797 TCGA-BP-4807 TCGA-BP-4965 TCGA-BP-4976 TCGA-BP-4982 TCGA-BP-4986 
       36.39         6.94        61.51        53.65        33.34        25.81 
TCGA-BP-4987 TCGA-BP-5006 TCGA-BP-5008 TCGA-BP-5009 TCGA-BP-5173 TCGA-BP-5174 
       36.95        27.62        35.21        36.23         1.78        74.20 
TCGA-BP-5182 TCGA-BP-5183 TCGA-BP-5184 TCGA-BP-5186 TCGA-BP-5202 TCGA-CJ-4642 
       38.30        42.44        37.25        22.78         0.95        53.52 
TCGA-CJ-6032 TCGA-CW-5589 TCGA-CW-6093 TCGA-CW-6096 TCGA-DV-5566 TCGA-DV-5568 
       83.77        78.15       103.43        88.80        45.96        12.16 
TCGA-DV-5569 TCGA-DV-5576 
       11.67        23.90 

$subtype6
TCGA-AK-3436 TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4698 
       67.20         1.41         4.57         3.48        28.47         1.38 
TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4718 TCGA-B0-4810 TCGA-B0-4813 
       19.73        43.96         6.64        20.25        15.72         0.59 
TCGA-B0-4814 TCGA-B0-4821 TCGA-B0-4822 TCGA-B0-4827 TCGA-B0-4828 TCGA-B0-4842 
        5.52        40.44        36.53        29.10        10.09        56.68 
TCGA-B0-4844 TCGA-B0-4848 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5107 TCGA-B0-5696 
       10.29        29.03        15.09        10.95        30.48        56.78 
TCGA-B0-5709 TCGA-B4-5838 TCGA-B8-4622 TCGA-B8-5158 TCGA-BP-4173 TCGA-BP-4326 
      102.48         5.46        23.01        20.91        62.24        53.42 
TCGA-BP-4352 TCGA-BP-4354 TCGA-BP-4761 TCGA-BP-4771 TCGA-BP-4787 TCGA-BP-4798 
       11.31        33.99         5.98         5.33        15.78        10.98 
TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4992 TCGA-BP-5000 TCGA-BP-5175 TCGA-CJ-4638 
       46.45        31.30        16.47        18.51        30.64        14.17 
TCGA-CJ-4869 TCGA-CJ-4875 TCGA-CJ-4881 TCGA-CJ-4891 TCGA-CJ-4913 TCGA-CJ-4920 
       83.97        77.36        66.21        26.93        38.56         4.57 
TCGA-CJ-5679 TCGA-CJ-6027 TCGA-CW-6087 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 
       22.32        60.99         1.35        46.16        47.08        63.88 
TCGA-CZ-5460 TCGA-CZ-5468 TCGA-CZ-5987 
       47.01         1.94        14.30 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
    0.23     0.07     0.23     0.82     0.95     0.59 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
  120.59   105.93   112.80    99.85   103.43   102.48 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
   47.11    32.40    35.85    37.22    37.10    22.32 
[1] "0.2 - 120.6 (47.1)" "0.1 - 105.9 (32.4)" "0.2 - 112.8 (35.9)"
[4] "0.8 - 99.8 (37.2)"  "0.9 - 103.4 (37.1)" "0.6 - 102.5 (22.3)"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype2" "subtype3"
  [7] "subtype3" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
 [13] "subtype1" "subtype5" "subtype3" "subtype3" "subtype4" "subtype3"
 [19] "subtype2" "subtype3" "subtype1" "subtype4" "subtype4" "subtype4"
 [25] "subtype2" "subtype1" "subtype5" "subtype3" "subtype4" "subtype4"
 [31] "subtype2" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
 [37] "subtype3" "subtype4" "subtype4" "subtype1" "subtype6" "subtype4"
 [43] "subtype2" "subtype4" "subtype2" "subtype6" "subtype6" "subtype5"
 [49] "subtype6" "subtype6" "subtype2" "subtype6" "subtype4" "subtype2"
 [55] "subtype2" "subtype2" "subtype1" "subtype6" "subtype5" "subtype6"
 [61] "subtype6" "subtype4" "subtype6" "subtype6" "subtype1" "subtype6"
 [67] "subtype6" "subtype2" "subtype1" "subtype4" "subtype1" "subtype2"
 [73] "subtype6" "subtype6" "subtype2" "subtype1" "subtype6" "subtype6"
 [79] "subtype1" "subtype4" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype1" "subtype6" "subtype2" "subtype6" "subtype1" "subtype1"
 [91] "subtype3" "subtype6" "subtype1" "subtype1" "subtype3" "subtype3"
 [97] "subtype4" "subtype2" "subtype3" "subtype4" "subtype1" "subtype2"
[103] "subtype6" "subtype6" "subtype2" "subtype4" "subtype2" "subtype4"
[109] "subtype5" "subtype2" "subtype1" "subtype2" "subtype2" "subtype6"
[115] "subtype2" "subtype4" "subtype1" "subtype5" "subtype1" "subtype5"
[121] "subtype4" "subtype1" "subtype2" "subtype1" "subtype1" "subtype4"
[127] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype6" "subtype3" "subtype1" "subtype1" "subtype4"
[139] "subtype3" "subtype4" "subtype4" "subtype1" "subtype2" "subtype3"
[145] "subtype6" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
[157] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype6"
[169] "subtype1" "subtype1" "subtype3" "subtype4" "subtype1" "subtype4"
[175] "subtype4" "subtype6" "subtype6" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype5" "subtype2" "subtype3" "subtype4" "subtype3"
[187] "subtype2" "subtype5" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype4" "subtype2" "subtype4" "subtype6" "subtype4" "subtype1"
[199] "subtype6" "subtype1" "subtype1" "subtype1" "subtype5" "subtype4"
[205] "subtype4" "subtype1" "subtype2" "subtype4" "subtype4" "subtype1"
[211] "subtype3" "subtype5" "subtype2" "subtype3" "subtype5" "subtype2"
[217] "subtype3" "subtype6" "subtype4" "subtype6" "subtype2" "subtype3"
[223] "subtype1" "subtype1" "subtype5" "subtype6" "subtype2" "subtype5"
[229] "subtype2" "subtype4" "subtype1" "subtype2" "subtype2" "subtype6"
[235] "subtype1" "subtype5" "subtype1" "subtype4" "subtype5" "subtype2"
[241] "subtype6" "subtype5" "subtype5" "subtype5" "subtype6" "subtype4"
[247] "subtype4" "subtype3" "subtype2" "subtype5" "subtype4" "subtype2"
[253] "subtype1" "subtype2" "subtype3" "subtype4" "subtype5" "subtype4"
[259] "subtype3" "subtype4" "subtype2" "subtype2" "subtype4" "subtype3"
[265] "subtype2" "subtype1" "subtype5" "subtype3" "subtype1" "subtype5"
[271] "subtype6" "subtype6" "subtype5" "subtype5" "subtype4" "subtype4"
[277] "subtype1" "subtype6" "subtype4" "subtype4" "subtype1" "subtype2"
[283] "subtype1" "subtype6" "subtype1" "subtype4" "subtype5" "subtype1"
[289] "subtype5" "subtype5" "subtype2" "subtype1" "subtype4" "subtype1"
[295] "subtype5" "subtype5" "subtype6" "subtype1" "subtype2" "subtype4"
[301] "subtype1" "subtype1" "subtype5" "subtype5" "subtype5" "subtype4"
[307] "subtype5" "subtype4" "subtype3" "subtype3" "subtype3" "subtype1"
[313] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype2"
[319] "subtype1" "subtype5" "subtype1" "subtype3" "subtype6" "subtype3"
[325] "subtype5" "subtype2" "subtype6" "subtype1" "subtype1" "subtype2"
[331] "subtype3" "subtype1" "subtype6" "subtype3" "subtype1" "subtype6"
[337] "subtype2" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
[343] "subtype2" "subtype2" "subtype6" "subtype2" "subtype3" "subtype2"
[349] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype2"
[355] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[361] "subtype6" "subtype1" "subtype2" "subtype6" "subtype2" "subtype2"
[367] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype6"
[373] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
[379] "subtype2" "subtype6" "subtype4" "subtype3" "subtype4" "subtype5"
[385] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[391] "subtype1" "subtype3" "subtype5" "subtype3" "subtype3" "subtype6"
[397] "subtype2" "subtype2" "subtype5" "subtype5" "subtype2" "subtype3"
[403] "subtype6" "subtype2" "subtype6" "subtype6" "subtype1" "subtype2"
[409] "subtype4" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[415] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype3"
[421] "subtype4" "subtype3" "subtype4" "subtype6" "subtype3" "subtype4"
[427] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype6"
[433] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[439] "subtype6" "subtype2" "subtype1" "subtype1" "subtype5" "subtype2"
[445] "subtype5" "subtype5" "subtype3" "subtype2" "subtype1" "subtype5"
[451] "subtype2" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype2" "subtype3"
  [7] "subtype3" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
 [13] "subtype1" "subtype5" "subtype3" "subtype3" "subtype4" "subtype3"
 [19] "subtype2" "subtype3" "subtype1" "subtype4" "subtype4" "subtype4"
 [25] "subtype2" "subtype1" "subtype5" "subtype3" "subtype4" "subtype4"
 [31] "subtype2" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
 [37] "subtype3" "subtype4" "subtype4" "subtype1" "subtype6" "subtype4"
 [43] "subtype2" "subtype4" "subtype2" "subtype6" "subtype6" "subtype5"
 [49] "subtype6" "subtype6" "subtype2" "subtype6" "subtype4" "subtype2"
 [55] "subtype2" "subtype2" "subtype1" "subtype6" "subtype5" "subtype6"
 [61] "subtype6" "subtype4" "subtype6" "subtype6" "subtype1" "subtype6"
 [67] "subtype6" "subtype2" "subtype1" "subtype4" "subtype1" "subtype2"
 [73] "subtype6" "subtype6" "subtype2" "subtype1" "subtype6" "subtype6"
 [79] "subtype1" "subtype4" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype1" "subtype6" "subtype2" "subtype6" "subtype1" "subtype1"
 [91] "subtype3" "subtype6" "subtype1" "subtype1" "subtype3" "subtype3"
 [97] "subtype4" "subtype2" "subtype3" "subtype4" "subtype1" "subtype2"
[103] "subtype6" "subtype6" "subtype2" "subtype4" "subtype2" "subtype4"
[109] "subtype5" "subtype2" "subtype1" "subtype2" "subtype2" "subtype6"
[115] "subtype2" "subtype4" "subtype1" "subtype5" "subtype1" "subtype5"
[121] "subtype4" "subtype1" "subtype2" "subtype1" "subtype1" "subtype4"
[127] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype6" "subtype3" "subtype1" "subtype1" "subtype4"
[139] "subtype3" "subtype4" "subtype4" "subtype1" "subtype2" "subtype3"
[145] "subtype6" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
[157] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype6"
[169] "subtype1" "subtype1" "subtype3" "subtype4" "subtype1" "subtype4"
[175] "subtype4" "subtype6" "subtype6" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype5" "subtype2" "subtype3" "subtype4" "subtype3"
[187] "subtype2" "subtype5" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype4" "subtype2" "subtype4" "subtype6" "subtype4" "subtype1"
[199] "subtype6" "subtype1" "subtype1" "subtype1" "subtype5" "subtype4"
[205] "subtype4" "subtype1" "subtype2" "subtype4" "subtype4" "subtype1"
[211] "subtype3" "subtype5" "subtype2" "subtype3" "subtype5" "subtype2"
[217] "subtype3" "subtype6" "subtype4" "subtype6" "subtype2" "subtype3"
[223] "subtype1" "subtype1" "subtype5" "subtype6" "subtype2" "subtype5"
[229] "subtype2" "subtype4" "subtype1" "subtype2" "subtype2" "subtype6"
[235] "subtype1" "subtype5" "subtype1" "subtype4" "subtype5" "subtype2"
[241] "subtype6" "subtype5" "subtype5" "subtype5" "subtype6" "subtype4"
[247] "subtype4" "subtype3" "subtype2" "subtype5" "subtype4" "subtype2"
[253] "subtype1" "subtype2" "subtype3" "subtype4" "subtype5" "subtype4"
[259] "subtype3" "subtype4" "subtype2" "subtype2" "subtype4" "subtype3"
[265] "subtype2" "subtype1" "subtype5" "subtype3" "subtype1" "subtype5"
[271] "subtype6" "subtype6" "subtype5" "subtype5" "subtype4" "subtype4"
[277] "subtype1" "subtype6" "subtype4" "subtype4" "subtype1" "subtype2"
[283] "subtype1" "subtype6" "subtype1" "subtype4" "subtype5" "subtype1"
[289] "subtype5" "subtype5" "subtype2" "subtype1" "subtype4" "subtype1"
[295] "subtype5" "subtype5" "subtype6" "subtype1" "subtype2" "subtype4"
[301] "subtype1" "subtype1" "subtype5" "subtype5" "subtype5" "subtype4"
[307] "subtype5" "subtype4" "subtype3" "subtype3" "subtype3" "subtype1"
[313] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype2"
[319] "subtype1" "subtype5" "subtype1" "subtype3" "subtype6" "subtype3"
[325] "subtype5" "subtype2" "subtype6" "subtype1" "subtype1" "subtype2"
[331] "subtype3" "subtype1" "subtype6" "subtype3" "subtype1" "subtype6"
[337] "subtype2" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
[343] "subtype2" "subtype2" "subtype6" "subtype2" "subtype3" "subtype2"
[349] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype2"
[355] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[361] "subtype6" "subtype1" "subtype2" "subtype6" "subtype2" "subtype2"
[367] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype6"
[373] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
[379] "subtype2" "subtype6" "subtype4" "subtype3" "subtype4" "subtype5"
[385] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[391] "subtype1" "subtype3" "subtype5" "subtype3" "subtype3" "subtype6"
[397] "subtype2" "subtype2" "subtype5" "subtype5" "subtype2" "subtype3"
[403] "subtype6" "subtype2" "subtype6" "subtype6" "subtype1" "subtype2"
[409] "subtype4" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[415] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype3"
[421] "subtype4" "subtype3" "subtype4" "subtype6" "subtype3" "subtype4"
[427] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype6"
[433] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[439] "subtype6" "subtype2" "subtype1" "subtype1" "subtype5" "subtype2"
[445] "subtype5" "subtype5" "subtype3" "subtype2" "subtype1" "subtype5"
[451] "subtype2" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype2" "subtype3"
  [7] "subtype3" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
 [13] "subtype1" "subtype5" "subtype3" "subtype3" "subtype4" "subtype3"
 [19] "subtype2" "subtype3" "subtype1" "subtype4" "subtype4" "subtype4"
 [25] "subtype2" "subtype1" "subtype5" "subtype3" "subtype4" "subtype4"
 [31] "subtype2" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
 [37] "subtype3" "subtype4" "subtype4" "subtype1" "subtype6" "subtype4"
 [43] "subtype2" "subtype4" "subtype2" "subtype6" "subtype6" "subtype5"
 [49] "subtype6" "subtype6" "subtype2" "subtype6" "subtype4" "subtype2"
 [55] "subtype2" "subtype2" "subtype1" "subtype6" "subtype5" "subtype6"
 [61] "subtype6" "subtype4" "subtype6" "subtype6" "subtype1" "subtype6"
 [67] "subtype6" "subtype2" "subtype1" "subtype4" "subtype1" "subtype2"
 [73] "subtype6" "subtype6" "subtype2" "subtype1" "subtype6" "subtype6"
 [79] "subtype1" "subtype4" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype1" "subtype6" "subtype2" "subtype6" "subtype1" "subtype1"
 [91] "subtype3" "subtype6" "subtype1" "subtype1" "subtype3" "subtype3"
 [97] "subtype4" "subtype2" "subtype3" "subtype4" "subtype1" "subtype2"
[103] "subtype6" "subtype6" "subtype2" "subtype4" "subtype2" "subtype4"
[109] "subtype5" "subtype2" "subtype1" "subtype2" "subtype2" "subtype6"
[115] "subtype2" "subtype4" "subtype1" "subtype5" "subtype1" "subtype5"
[121] "subtype4" "subtype1" "subtype2" "subtype1" "subtype1" "subtype4"
[127] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype6" "subtype3" "subtype1" "subtype1" "subtype4"
[139] "subtype3" "subtype4" "subtype4" "subtype1" "subtype2" "subtype3"
[145] "subtype6" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
[157] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype6"
[169] "subtype1" "subtype1" "subtype3" "subtype4" "subtype1" "subtype4"
[175] "subtype4" "subtype6" "subtype6" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype5" "subtype2" "subtype3" "subtype4" "subtype3"
[187] "subtype2" "subtype5" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype4" "subtype2" "subtype4" "subtype6" "subtype4" "subtype1"
[199] "subtype6" "subtype1" "subtype1" "subtype1" "subtype5" "subtype4"
[205] "subtype4" "subtype1" "subtype2" "subtype4" "subtype4" "subtype1"
[211] "subtype3" "subtype5" "subtype2" "subtype3" "subtype5" "subtype2"
[217] "subtype3" "subtype6" "subtype4" "subtype6" "subtype2" "subtype3"
[223] "subtype1" "subtype1" "subtype5" "subtype6" "subtype2" "subtype5"
[229] "subtype2" "subtype4" "subtype1" "subtype2" "subtype2" "subtype6"
[235] "subtype1" "subtype5" "subtype1" "subtype4" "subtype5" "subtype2"
[241] "subtype6" "subtype5" "subtype5" "subtype5" "subtype6" "subtype4"
[247] "subtype4" "subtype3" "subtype2" "subtype5" "subtype4" "subtype2"
[253] "subtype1" "subtype2" "subtype3" "subtype4" "subtype5" "subtype4"
[259] "subtype3" "subtype4" "subtype2" "subtype2" "subtype4" "subtype3"
[265] "subtype2" "subtype1" "subtype5" "subtype3" "subtype1" "subtype5"
[271] "subtype6" "subtype6" "subtype5" "subtype5" "subtype4" "subtype4"
[277] "subtype1" "subtype6" "subtype4" "subtype4" "subtype1" "subtype2"
[283] "subtype1" "subtype6" "subtype1" "subtype4" "subtype5" "subtype1"
[289] "subtype5" "subtype5" "subtype2" "subtype1" "subtype4" "subtype1"
[295] "subtype5" "subtype5" "subtype6" "subtype1" "subtype2" "subtype4"
[301] "subtype1" "subtype1" "subtype5" "subtype5" "subtype5" "subtype4"
[307] "subtype5" "subtype4" "subtype3" "subtype3" "subtype3" "subtype1"
[313] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype2"
[319] "subtype1" "subtype5" "subtype1" "subtype3" "subtype6" "subtype3"
[325] "subtype5" "subtype2" "subtype6" "subtype1" "subtype1" "subtype2"
[331] "subtype3" "subtype1" "subtype6" "subtype3" "subtype1" "subtype6"
[337] "subtype2" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
[343] "subtype2" "subtype2" "subtype6" "subtype2" "subtype3" "subtype2"
[349] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype2"
[355] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[361] "subtype6" "subtype1" "subtype2" "subtype6" "subtype2" "subtype2"
[367] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype6"
[373] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
[379] "subtype2" "subtype6" "subtype4" "subtype3" "subtype4" "subtype5"
[385] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[391] "subtype1" "subtype3" "subtype5" "subtype3" "subtype3" "subtype6"
[397] "subtype2" "subtype2" "subtype5" "subtype5" "subtype2" "subtype3"
[403] "subtype6" "subtype2" "subtype6" "subtype6" "subtype1" "subtype2"
[409] "subtype4" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[415] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype3"
[421] "subtype4" "subtype3" "subtype4" "subtype6" "subtype3" "subtype4"
[427] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype6"
[433] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[439] "subtype6" "subtype2" "subtype1" "subtype1" "subtype5" "subtype2"
[445] "subtype5" "subtype5" "subtype3" "subtype2" "subtype1" "subtype5"
[451] "subtype2" "subtype3" "subtype1" "subtype3"
D5V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      54       11        22       14
  subtype2      42        9        19       20
  subtype3      39       12        24       11
  subtype4      44        7        17        8
  subtype5      33        2         9        0
  subtype6       7        3        24       23
D5V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 54 15 31  1
  subtype2 43 10 32  5
  subtype3 41 12 33  0
  subtype4 45  7 23  1
  subtype5 33  2  9  0
  subtype6  8  8 37  4
D5V4, multiclass
D5V5, binary
          cls
clus        0  1
  subtype1 48  1
  subtype2 46  2
  subtype3 43  2
  subtype4 35  3
  subtype5 13  0
  subtype6 23  8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   48    1
  subtype2   46    2
  subtype3   43    2
  subtype4   35    3
  subtype5   13    0
  subtype6   23    8
          vv
clus       M0 M1
  subtype1 87 14
  subtype2 71 19
  subtype3 75 11
  subtype4 68  8
  subtype5 44  0
  subtype6 34 23
D5V6, multiclass
D5V7, binary
          cls
clus        0  1
  subtype1 44 57
  subtype2 29 61
  subtype3 27 59
  subtype4 18 58
  subtype5 18 26
  subtype6 15 42
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   44   57
  subtype2   29   61
  subtype3   27   59
  subtype4   18   58
  subtype5   18   26
  subtype6   15   42
D5V8, continuous
[1] "Remove cluster labels:" "subtype4"              
clus
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
       7        8       10        2        4        3 
 [1] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [7] "subtype3" "subtype2" "subtype6" "subtype1" "subtype1" "subtype6"
[13] "subtype2" "subtype6" "subtype2" "subtype3" "subtype3" "subtype1"
[19] "subtype3" "subtype1" "subtype1" "subtype5" "subtype2" "subtype5"
[25] "subtype5" "subtype3" "subtype2" "subtype1" "subtype5" "subtype2"
[31] "subtype3" "subtype3"
D5V9, continuous
[1] "Remove cluster labels:" "subtype3"               "subtype4"              
[4] "subtype6"              
clus
subtype3 subtype4 subtype6 
       1        1        1 
character(0)

Clustering(6) Variable = RPPA_CHIERARCHICAL
D6V1, survival
          sevent
clus2        0   1
  subtype1 145  44
  subtype2 101  52
  subtype3  50  62
subtype1 subtype2 subtype3 
     189      153      112 
subtype1 subtype2 subtype3 
      44       52       62 
$subtype1
TCGA-A3-3308 TCGA-A3-3316 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3329 
        0.53        49.08        49.58        48.59        38.99        23.21 
TCGA-A3-3331 TCGA-A3-3349 TCGA-A3-3357 TCGA-A3-3362 TCGA-A3-3365 TCGA-A3-3370 
       48.82        45.53        88.37        51.25        28.70        74.76 
TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3380 TCGA-A3-3382 TCGA-AK-3444 TCGA-AK-3451 
       53.29        35.18        18.64        18.87        48.36        48.69 
TCGA-B0-4697 TCGA-B0-4698 TCGA-B0-4701 TCGA-B0-4703 TCGA-B0-4710 TCGA-B0-4819 
       19.00         1.38         7.82         5.98         3.16         6.02 
TCGA-B0-4823 TCGA-B0-4837 TCGA-B0-4843 TCGA-B0-5080 TCGA-B0-5088 TCGA-B0-5095 
       14.93        45.30        11.64        11.24        18.51         8.05 
TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5099 TCGA-B0-5100 TCGA-B0-5106 TCGA-B0-5108 
        2.24        21.86        15.95        62.89        52.54        29.95 
TCGA-B0-5110 TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5120 TCGA-B0-5693 TCGA-B0-5702 
       35.90        11.80        26.20        16.21       101.13        52.77 
TCGA-B0-5706 TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5712 TCGA-B2-3924 TCGA-B2-4098 
       79.36        47.97        96.36        89.49        35.90         1.68 
TCGA-B2-4099 TCGA-B2-5633 TCGA-B2-5636 TCGA-B4-5378 TCGA-B4-5834 TCGA-B8-4146 
       12.30        11.77        30.21         5.75         1.25        16.80 
TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5549 TCGA-B8-5552 
        1.18        27.02        24.23        17.16         6.38        12.89 
TCGA-B8-5553 TCGA-BP-4165 TCGA-BP-4169 TCGA-BP-4170 TCGA-BP-4174 TCGA-BP-4326 
       14.30        99.85        23.05        77.03        61.78        53.42 
TCGA-BP-4331 TCGA-BP-4332 TCGA-BP-4341 TCGA-BP-4342 TCGA-BP-4344 TCGA-BP-4349 
       80.68        37.25        52.24        74.17        54.77        12.23 
TCGA-BP-4353 TCGA-BP-4355 TCGA-BP-4758 TCGA-BP-4759 TCGA-BP-4760 TCGA-BP-4762 
       12.33        31.33        72.59        77.98        77.62        44.15 
TCGA-BP-4763 TCGA-BP-4765 TCGA-BP-4769 TCGA-BP-4774 TCGA-BP-4775 TCGA-BP-4777 
       41.75        71.80        61.68        61.97        60.59        56.91 
TCGA-BP-4781 TCGA-BP-4784 TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4797 TCGA-BP-4799 
       68.38        60.95        48.95        36.53        36.39        37.25 
TCGA-BP-4801 TCGA-BP-4803 TCGA-BP-4804 TCGA-BP-4807 TCGA-BP-4959 TCGA-BP-4961 
       36.95         6.71        47.97         6.94        87.45        63.62 
TCGA-BP-4962 TCGA-BP-4964 TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4972 TCGA-BP-4974 
       58.68        61.22        14.24        48.89        49.38         7.23 
TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4982 TCGA-BP-4986 TCGA-BP-4987 TCGA-BP-4991 
       47.11        53.65        33.34        25.81        36.95        46.45 
TCGA-BP-4993 TCGA-BP-4995 TCGA-BP-4998 TCGA-BP-4999 TCGA-BP-5006 TCGA-BP-5007 
        5.82        45.07        30.64        41.62        27.62        37.48 
TCGA-BP-5008 TCGA-BP-5009 TCGA-BP-5010 TCGA-BP-5168 TCGA-BP-5177 TCGA-BP-5181 
       35.21        36.23        28.87        48.10         9.63        49.15 
TCGA-BP-5182 TCGA-BP-5184 TCGA-BP-5186 TCGA-BP-5187 TCGA-BP-5192 TCGA-BP-5194 
       38.30        37.25        22.78        13.35        23.47        13.41 
TCGA-BP-5196 TCGA-BP-5198 TCGA-BP-5199 TCGA-BP-5200 TCGA-BP-5202 TCGA-CJ-4634 
       33.47        19.82        44.55        34.95         0.95        59.84 
TCGA-CJ-4642 TCGA-CJ-4868 TCGA-CJ-4870 TCGA-CJ-4871 TCGA-CJ-4872 TCGA-CJ-4878 
       53.52        21.24        49.25        79.66        47.18        71.87 
TCGA-CJ-4886 TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4899 
       64.18        63.98        68.55        24.66        27.65        50.24 
TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4902 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 
       56.35        47.67        49.97        51.29        58.92        49.18 
TCGA-CJ-4908 TCGA-CJ-4918 TCGA-CJ-4920 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5676 
       50.33         3.06         4.57        18.81        63.88        84.66 
TCGA-CJ-5682 TCGA-CJ-5684 TCGA-CJ-6032 TCGA-CW-5583 TCGA-CW-5588 TCGA-CW-5589 
       61.91        73.35        83.77        81.83        66.28        78.15 
TCGA-CW-5590 TCGA-CW-6088 TCGA-CW-6090 TCGA-CW-6093 TCGA-CZ-4856 TCGA-CZ-4859 
       35.34       105.93        83.90       103.43         0.59        58.75 
TCGA-CZ-4865 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5457 TCGA-CZ-5459 TCGA-CZ-5461 
        5.46         0.82        23.74        55.33        55.33        10.85 
TCGA-CZ-5463 TCGA-CZ-5465 TCGA-CZ-5982 TCGA-CZ-5988 TCGA-DV-5566 TCGA-DV-5567 
       21.76        47.54        80.19        22.78        45.96        48.33 
TCGA-DV-5568 TCGA-DV-5569 TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5575 TCGA-DV-5576 
       12.16        11.67        37.15        23.77        56.84        23.90 
TCGA-EU-5904 TCGA-EU-5905 TCGA-EU-5907 
       18.12         3.91         4.18 

$subtype2
TCGA-A3-3306 TCGA-A3-3311 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3323 TCGA-A3-3326 
       36.82        39.16        49.02        37.15        36.36        37.38 
TCGA-A3-3336 TCGA-A3-3347 TCGA-A3-3351 TCGA-A3-3352 TCGA-A3-3367 TCGA-A3-3372 
       34.29        52.93        29.92        18.44        74.63        24.16 
TCGA-A3-3383 TCGA-A3-3385 TCGA-A3-3387 TCGA-B0-4691 TCGA-B0-4693 TCGA-B0-4712 
       28.31        65.52        20.28         4.57         2.53        43.96 
TCGA-B0-4811 TCGA-B0-4816 TCGA-B0-4818 TCGA-B0-4822 TCGA-B0-4824 TCGA-B0-4836 
       46.59        45.07        16.77        36.53        54.48        40.70 
TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 
       27.42        53.88        65.29        39.45        26.07         2.27 
TCGA-B0-4852 TCGA-B0-5075 TCGA-B0-5077 TCGA-B0-5081 TCGA-B0-5085 TCGA-B0-5092 
       36.85        20.94        43.30        11.90        25.32        15.09 
TCGA-B0-5104 TCGA-B0-5116 TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5692 
       90.48        21.60        21.44        14.76        79.17        48.89 
TCGA-B0-5694 TCGA-B0-5697 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5701 TCGA-B0-5705 
       15.78        60.33        84.92        90.12        56.94       120.59 
TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5635 TCGA-B2-5639 
       61.32        97.41        21.30        31.30        10.36        13.71 
TCGA-B2-5641 TCGA-B4-5377 TCGA-B4-5832 TCGA-B4-5835 TCGA-B4-5843 TCGA-B8-4143 
       21.57         9.57         0.23         0.53         0.36        23.31 
TCGA-B8-4153 TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5546 TCGA-B8-5550 TCGA-B8-5551 
       25.05        23.74         0.85        16.60        14.27         0.49 
TCGA-BP-4158 TCGA-BP-4161 TCGA-BP-4164 TCGA-BP-4173 TCGA-BP-4325 TCGA-BP-4330 
      111.02        90.28        32.61        62.24        97.45        62.07 
TCGA-BP-4343 TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4351 TCGA-BP-4768 TCGA-BP-4776 
       62.86        49.08        44.94        31.89        13.15        13.51 
TCGA-BP-4963 TCGA-BP-4965 TCGA-BP-4967 TCGA-BP-4968 TCGA-BP-4973 TCGA-BP-4977 
       60.30        61.51         6.74        57.40        45.50        14.93 
TCGA-BP-4981 TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4992 TCGA-BP-5000 TCGA-BP-5001 
       36.07        46.45        31.30        16.47        18.51        38.70 
TCGA-BP-5173 TCGA-BP-5174 TCGA-BP-5176 TCGA-BP-5183 TCGA-BP-5185 TCGA-BP-5189 
        1.78        74.20        52.27        42.44        37.22        27.02 
TCGA-BP-5190 TCGA-BP-5191 TCGA-BP-5195 TCGA-BP-5201 TCGA-CJ-4635 TCGA-CJ-4640 
       33.24        31.79        24.62        31.27        46.55        65.69 
TCGA-CJ-4869 TCGA-CJ-4873 TCGA-CJ-4874 TCGA-CJ-4875 TCGA-CJ-4876 TCGA-CJ-4881 
       83.97        74.27        75.06        77.36        64.27        66.21 
TCGA-CJ-4884 TCGA-CJ-4887 TCGA-CJ-4895 TCGA-CJ-4897 TCGA-CJ-4907 TCGA-CJ-4912 
       57.83        30.64        39.45        59.44        49.28        54.48 
TCGA-CJ-4916 TCGA-CJ-5672 TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5683 
       45.14        72.00        25.71        18.87        22.32        62.10 
TCGA-CJ-5686 TCGA-CJ-6027 TCGA-CJ-6030 TCGA-CW-5580 TCGA-CW-5581 TCGA-CW-5584 
       67.00        60.99        75.58        64.57        92.02         5.39 
TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-5591 TCGA-CW-6087 TCGA-CW-6096 TCGA-CW-6097 
       85.78        73.18        74.63         1.35        88.80        18.74 
TCGA-CZ-4853 TCGA-CZ-4862 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-4866 TCGA-CZ-5451 
       25.45        60.59        63.39        93.04        61.41        63.42 
TCGA-CZ-5452 TCGA-CZ-5455 TCGA-CZ-5456 TCGA-CZ-5458 TCGA-CZ-5464 TCGA-CZ-5466 
       58.82        18.44        56.28        56.94        57.21        22.52 
TCGA-CZ-5467 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5986 
        2.40         1.94        31.10        67.96        65.65        12.26 
TCGA-CZ-5989 TCGA-DV-5565 TCGA-EU-5906 
       62.63        43.69         6.77 

$subtype3
TCGA-A3-3313 TCGA-A3-3335 TCGA-A3-3346 TCGA-A3-3363 TCGA-A3-3374 TCGA-A3-3378 
       24.16        21.86         4.50        10.49        43.20        20.71 
TCGA-AK-3427 TCGA-AK-3428 TCGA-AK-3434 TCGA-AK-3436 TCGA-AK-3456 TCGA-B0-4688 
       84.36        73.08        68.61        67.20        37.58         3.32 
TCGA-B0-4690 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4699 TCGA-B0-4700 TCGA-B0-4706 
        1.41         3.48        28.47         3.62        65.10         0.85 
TCGA-B0-4707 TCGA-B0-4713 TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4810 TCGA-B0-4813 
       19.73         6.64         3.25        20.25        15.72         0.59 
TCGA-B0-4814 TCGA-B0-4815 TCGA-B0-4817 TCGA-B0-4821 TCGA-B0-4827 TCGA-B0-4828 
        5.52        52.21        33.50        40.44        29.10        10.09 
TCGA-B0-4833 TCGA-B0-4834 TCGA-B0-4841 TCGA-B0-4842 TCGA-B0-4844 TCGA-B0-4848 
       78.44        68.71         6.71        56.68        10.29        29.03 
TCGA-B0-4945 TCGA-B0-5084 TCGA-B0-5094 TCGA-B0-5098 TCGA-B0-5102 TCGA-B0-5107 
       70.52         7.30        10.95        52.08        90.87        30.48 
TCGA-B0-5109 TCGA-B0-5117 TCGA-B0-5119 TCGA-B0-5121 TCGA-B0-5400 TCGA-B0-5691 
       19.30        17.59         1.94        18.21        37.22       112.80 
TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5700 TCGA-B0-5703 TCGA-B0-5707 TCGA-B0-5709 
       46.68        56.78        35.57        39.55        92.98       102.48 
TCGA-B2-3923 TCGA-B4-5836 TCGA-B4-5838 TCGA-B4-5844 TCGA-B8-4620 TCGA-B8-4621 
       32.61         4.64         5.46         0.23        25.55        25.91 
TCGA-B8-4622 TCGA-B8-5158 TCGA-BP-4327 TCGA-BP-4329 TCGA-BP-4334 TCGA-BP-4335 
       23.01        20.91         3.58        27.78        21.21        15.16 
TCGA-BP-4337 TCGA-BP-4338 TCGA-BP-4345 TCGA-BP-4352 TCGA-BP-4354 TCGA-BP-4756 
        0.07        93.99        49.84        11.31        33.99        12.30 
TCGA-BP-4761 TCGA-BP-4766 TCGA-BP-4770 TCGA-BP-4771 TCGA-BP-4787 TCGA-BP-4798 
        5.98        48.07        10.82         5.33        15.78        10.98 
TCGA-BP-4960 TCGA-BP-4969 TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4994 TCGA-BP-5004 
       71.41        58.98        27.22         3.88        43.00        37.02 
TCGA-BP-5169 TCGA-BP-5170 TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 TCGA-CJ-4638 
        6.35        79.30        30.64        62.86        74.40        14.17 
TCGA-CJ-4882 TCGA-CJ-4885 TCGA-CJ-4888 TCGA-CJ-4891 TCGA-CJ-4892 TCGA-CJ-4913 
       61.91        69.86        51.52        26.93        50.01        38.56 
TCGA-CJ-5675 TCGA-CJ-5680 TCGA-CJ-5681 TCGA-CJ-5689 TCGA-CJ-6028 TCGA-CJ-6031 
       79.89        25.25        18.15        53.26        53.42        62.66 
TCGA-CJ-6033 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4860 TCGA-CZ-4861 
        7.36        46.16        47.08        63.88         6.77        14.66 
TCGA-CZ-5460 TCGA-CZ-5462 TCGA-CZ-5470 TCGA-CZ-5987 
       47.01        10.22        12.69        14.30 

subtype1 subtype2 subtype3 
    0.53     0.23     0.07 
subtype1 subtype2 subtype3 
  105.93   120.59   112.80 
subtype1 subtype2 subtype3 
  37.480   39.450   27.075 
[1] "0.5 - 105.9 (37.5)" "0.2 - 120.6 (39.5)" "0.1 - 112.8 (27.1)"
  [1] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[103] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[127] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[145] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[151] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[217] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[229] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[235] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[241] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[253] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[259] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[271] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[277] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[283] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[295] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[301] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[313] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[325] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[331] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[337] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[343] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[349] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[355] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[361] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[367] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[373] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[379] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[385] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[391] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[397] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[403] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[409] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[415] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[421] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[439] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[445] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[451] "subtype1" "subtype1" "subtype2" "subtype1"
  [1] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[103] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[127] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[145] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[151] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[217] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[229] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[235] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[241] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[253] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[259] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[271] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[277] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[283] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[295] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[301] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[313] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[325] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[331] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[337] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[343] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[349] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[355] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[361] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[367] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[373] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[379] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[385] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[391] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[397] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[403] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[409] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[415] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[421] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[439] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[445] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[451] "subtype1" "subtype1" "subtype2" "subtype1"
  [1] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[103] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[127] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[145] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[151] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[217] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[229] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[235] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[241] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[253] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[259] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[271] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[277] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[283] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[295] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[301] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[313] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[325] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[331] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[337] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[343] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[349] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[355] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[361] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[367] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[373] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[379] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[385] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[391] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[397] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[403] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[409] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[415] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[421] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[439] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[445] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[451] "subtype1" "subtype1" "subtype2" "subtype1"
D6V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1     118       16        36       19
  subtype2      65       17        47       24
  subtype3      36       11        32       33
D6V3, multiclass
          vv
clus        T1  T2  T3  T4
  subtype1 120  19  48   2
  subtype2  67  20  65   1
  subtype3  37  15  52   8
D6V4, multiclass
D6V5, binary
          cls
clus        0  1
  subtype1 72  4
  subtype2 76  4
  subtype3 60  8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   72    4
  subtype2   76    4
  subtype3   60    8
   clus
vv  subtype1 subtype2 subtype3
  0       72       76       60
  1        4        4        8
          vv
clus        M0  M1
  subtype1 170  19
  subtype2 130  23
  subtype3  79  33
D6V6, multiclass
    clus
vv   subtype1 subtype2 subtype3
  M0      170      130       79
  M1       19       23       33
D6V7, binary
          cls
clus         0   1
  subtype1  68 121
  subtype2  47 106
  subtype3  36  76
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   68  121
  subtype2   47  106
  subtype3   36   76
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       68       47       36
  MALE        121      106       76
D6V8, continuous
D6V9, continuous
[1] "Remove cluster labels:" "subtype2"               "subtype3"              
clus
subtype2 subtype3 
       1        2 
character(0)

Clustering(7) Variable = MRNASEQ_CNMF
D7V1, survival
          sevent
clus2        0   1
  subtype1 164  46
  subtype2  75  33
  subtype3  97  87
subtype1 subtype2 subtype3 
     210      108      184 
subtype1 subtype2 subtype3 
      46       33       87 
$subtype1
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3311 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 
       36.82        47.21        39.16        49.58        48.59        38.99 
TCGA-A3-3325 TCGA-A3-3326 TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3351 
       24.69        37.38        23.21        48.82        31.07        29.92 
TCGA-A3-3352 TCGA-A3-3358 TCGA-A3-3359 TCGA-A3-3367 TCGA-A3-3370 TCGA-A3-3372 
       18.44        42.97        82.32        74.63        74.76        24.16 
TCGA-A3-3373 TCGA-A3-3380 TCGA-A3-3383 TCGA-A3-3385 TCGA-AK-3429 TCGA-AK-3434 
       53.29        18.64        28.31        65.52        66.31        68.61 
TCGA-AK-3444 TCGA-AK-3450 TCGA-AK-3454 TCGA-AK-3455 TCGA-AK-3458 TCGA-AK-3460 
       48.36        58.49        28.73        22.45        38.40        31.27 
TCGA-B0-4693 TCGA-B0-4701 TCGA-B0-4710 TCGA-B0-4714 TCGA-B0-4814 TCGA-B0-4818 
        2.53         7.82         3.16         3.25         5.52        16.77 
TCGA-B0-4824 TCGA-B0-4828 TCGA-B0-4833 TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4845 
       54.48        10.09        78.44        27.42        53.88        65.29 
TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-4945 TCGA-B0-5077 
       39.45        26.07         2.27        36.85        70.52        43.30 
TCGA-B0-5085 TCGA-B0-5088 TCGA-B0-5099 TCGA-B0-5102 TCGA-B0-5104 TCGA-B0-5110 
       25.32        18.51        15.95        90.87        90.48        35.90 
TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5119 TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5402 
       11.80        26.20         1.94        18.21        21.44        14.76 
TCGA-B0-5690 TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5698 
       79.17        48.89       101.13        46.68        56.78        84.92 
TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5703 TCGA-B0-5705 TCGA-B0-5710 TCGA-B0-5711 
       90.12        35.57        39.55       120.59        47.97        96.36 
TCGA-B0-5712 TCGA-B0-5713 TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 
       89.49        61.32        35.90        12.30        21.30        31.30 
TCGA-B2-5635 TCGA-B2-5639 TCGA-B2-A4SR TCGA-B4-5377 TCGA-B4-5834 TCGA-B4-5836 
       10.36        13.71        16.67         9.57         1.25         4.64 
TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 TCGA-B8-4153 
        0.36         0.23        16.80        27.16        27.55        25.05 
TCGA-B8-4154 TCGA-B8-4622 TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5549 TCGA-B8-5553 
       24.66        23.01        23.74         0.85         6.38        14.30 
TCGA-B8-A54J TCGA-BP-4158 TCGA-BP-4160 TCGA-BP-4162 TCGA-BP-4164 TCGA-BP-4165 
        2.17       111.02        94.72       101.06        32.61        99.85 
TCGA-BP-4170 TCGA-BP-4325 TCGA-BP-4327 TCGA-BP-4330 TCGA-BP-4331 TCGA-BP-4335 
       77.03        97.45         3.58        62.07        80.68        15.16 
TCGA-BP-4340 TCGA-BP-4341 TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4349 TCGA-BP-4351 
       18.48        52.24        49.08        44.94        12.23        31.89 
TCGA-BP-4756 TCGA-BP-4758 TCGA-BP-4765 TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4774 
       12.30        72.59        71.80        48.07        13.15        61.97 
TCGA-BP-4775 TCGA-BP-4776 TCGA-BP-4777 TCGA-BP-4782 TCGA-BP-4807 TCGA-BP-4961 
       60.59        13.51        56.91        11.64         6.94        63.62 
TCGA-BP-4964 TCGA-BP-4965 TCGA-BP-4968 TCGA-BP-4969 TCGA-BP-4973 TCGA-BP-4974 
       61.22        61.51        57.40        58.98        45.50         7.23 
TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4981 TCGA-BP-4982 TCGA-BP-4987 TCGA-BP-4991 
       47.11        53.65        36.07        33.34        36.95        46.45 
TCGA-BP-4993 TCGA-BP-4999 TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5006 TCGA-BP-5007 
        5.82        41.62        38.70        37.02        27.62        37.48 
TCGA-BP-5168 TCGA-BP-5173 TCGA-BP-5174 TCGA-BP-5176 TCGA-BP-5181 TCGA-BP-5183 
       48.10         1.78        74.20        52.27        49.15        42.44 
TCGA-BP-5184 TCGA-BP-5185 TCGA-BP-5186 TCGA-BP-5190 TCGA-BP-5192 TCGA-BP-5194 
       37.25        37.22        22.78        33.24        23.47        13.41 
TCGA-BP-5200 TCGA-BP-5201 TCGA-BP-5202 TCGA-CJ-4634 TCGA-CJ-4639 TCGA-CJ-4643 
       34.95        31.27         0.95        59.84        75.88        58.95 
TCGA-CJ-4644 TCGA-CJ-4870 TCGA-CJ-4874 TCGA-CJ-4875 TCGA-CJ-4876 TCGA-CJ-4878 
       11.05        49.25        75.06        77.36        64.27        71.87 
TCGA-CJ-4885 TCGA-CJ-4886 TCGA-CJ-4887 TCGA-CJ-4892 TCGA-CJ-4893 TCGA-CJ-4894 
       69.86        64.18        30.64        50.01        24.66        27.65 
TCGA-CJ-4897 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4908 TCGA-CJ-4916 TCGA-CJ-5672 
       59.44        51.29        58.92        50.33        45.14        72.00 
TCGA-CJ-5675 TCGA-CJ-5684 TCGA-CJ-6032 TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5585 
       79.89        73.35        83.77        92.02         5.39        85.78 
TCGA-CW-5587 TCGA-CW-6088 TCGA-CW-6093 TCGA-CZ-4853 TCGA-CZ-4856 TCGA-CZ-4859 
       73.18       105.93       103.43        25.45         0.59        58.75 
TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-5451 TCGA-CZ-5453 TCGA-CZ-5455 TCGA-CZ-5457 
       63.39        93.04        63.42         0.82        18.44        55.33 
TCGA-CZ-5458 TCGA-CZ-5460 TCGA-CZ-5463 TCGA-CZ-5465 TCGA-CZ-5982 TCGA-CZ-5986 
       56.94        47.01        21.76        47.54        80.19        12.26 
TCGA-CZ-5989 TCGA-DV-5566 TCGA-DV-5575 TCGA-EU-5904 TCGA-EU-5906 TCGA-GK-A6C7 
       62.63        45.96        56.84        18.12         6.77         2.01 

$subtype2
TCGA-A3-3308 TCGA-A3-3313 TCGA-A3-3317 TCGA-A3-3328 TCGA-A3-3349 TCGA-A3-3362 
        0.53        24.16        49.02        45.53        45.53        51.25 
TCGA-A3-3363 TCGA-A3-3365 TCGA-A3-3374 TCGA-A3-3376 TCGA-AK-3427 TCGA-AK-3428 
       10.49        28.70        43.20        35.18        84.36        73.08 
TCGA-AK-3431 TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3447 TCGA-AK-3453 
       60.92        72.07        57.37        46.78        40.01        45.93 
TCGA-AK-3456 TCGA-AK-3461 TCGA-AK-3465 TCGA-AS-3777 TCGA-B0-4688 TCGA-B0-4696 
       37.58        28.04        12.13        40.70         3.32        28.47 
TCGA-B0-4699 TCGA-B0-4703 TCGA-B0-4706 TCGA-B0-4811 TCGA-B0-4823 TCGA-B0-4834 
        3.62         5.98         0.85        46.59        14.93        68.71 
TCGA-B0-4841 TCGA-B0-5080 TCGA-B0-5083 TCGA-B0-5100 TCGA-B0-5109 TCGA-B0-5117 
        6.71        11.24        34.36        62.89        19.30        17.59 
TCGA-B0-5120 TCGA-B0-5691 TCGA-B0-5697 TCGA-B0-5702 TCGA-B0-5707 TCGA-B0-5709 
       16.21       112.80        60.33        52.77        92.98       102.48 
TCGA-B0-5812 TCGA-B2-3923 TCGA-B2-5636 TCGA-B4-5378 TCGA-B4-5838 TCGA-B8-4619 
       97.41        32.61        30.21         5.75         5.46        17.19 
TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5546 TCGA-B8-5552 TCGA-BP-4159 TCGA-BP-4163 
       24.23        17.16        16.60        12.89        85.51        93.34 
TCGA-BP-4166 TCGA-BP-4169 TCGA-BP-4177 TCGA-BP-4329 TCGA-BP-4332 TCGA-BP-4334 
        0.43        23.05        54.90        27.78        37.25        21.21 
TCGA-BP-4337 TCGA-BP-4344 TCGA-BP-4345 TCGA-BP-4355 TCGA-BP-4759 TCGA-BP-4760 
        0.07        54.77        49.84        31.33        77.98        77.62 
TCGA-BP-4762 TCGA-BP-4763 TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4784 TCGA-BP-4789 
       44.15        41.75        61.68        10.82        60.95        48.95 
TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4801 TCGA-BP-4970 TCGA-BP-4972 TCGA-BP-4994 
       36.53        20.38        36.95        14.24        49.38        43.00 
TCGA-BP-4995 TCGA-BP-4998 TCGA-BP-5008 TCGA-BP-5010 TCGA-BP-5177 TCGA-BP-5182 
       45.07        30.64        35.21        28.87         9.63        38.30 
TCGA-BP-5187 TCGA-BP-5199 TCGA-CJ-4642 TCGA-CJ-4889 TCGA-CJ-4899 TCGA-CJ-4905 
       13.35        44.55        53.52        63.98        50.24        49.18 
TCGA-CJ-4907 TCGA-CJ-4918 TCGA-CJ-5680 TCGA-CJ-5681 TCGA-CJ-5682 TCGA-CJ-5683 
       49.28         3.06        25.25        18.15        61.91        62.10 
TCGA-CJ-5689 TCGA-CW-5580 TCGA-CW-5583 TCGA-CW-5589 TCGA-CW-5591 TCGA-CZ-5467 
       53.26        64.57        81.83        78.15        74.63         2.40 
TCGA-DV-5565 TCGA-DV-5567 TCGA-DV-5569 TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5576 
       43.69        48.33        11.67        37.15        23.77        23.90 

$subtype3
TCGA-A3-3316 TCGA-A3-3319 TCGA-A3-3323 TCGA-A3-3335 TCGA-A3-3346 TCGA-A3-3347 
       49.08        37.15        36.36        21.86         4.50        52.93 
TCGA-A3-3357 TCGA-A3-3378 TCGA-A3-3382 TCGA-A3-3387 TCGA-AK-3425 TCGA-AK-3426 
       88.37        20.71        18.87        20.28       109.91        29.10 
TCGA-AK-3436 TCGA-AK-3445 TCGA-AK-3451 TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 
       67.20        42.08        48.69         1.41         4.57         3.48 
TCGA-B0-4697 TCGA-B0-4698 TCGA-B0-4700 TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4713 
       19.00         1.38        65.10        19.73        43.96         6.64 
TCGA-B0-4718 TCGA-B0-4810 TCGA-B0-4813 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 
       20.25        15.72         0.59        52.21        45.07        33.50 
TCGA-B0-4819 TCGA-B0-4821 TCGA-B0-4822 TCGA-B0-4827 TCGA-B0-4836 TCGA-B0-4837 
        6.02        40.44        36.53        29.10        40.70        45.30 
TCGA-B0-4842 TCGA-B0-4843 TCGA-B0-4844 TCGA-B0-4848 TCGA-B0-5075 TCGA-B0-5081 
       56.68        11.64        10.29        29.03        20.94        11.90 
TCGA-B0-5084 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5095 TCGA-B0-5096 TCGA-B0-5097 
        7.30        15.09        10.95         8.05         2.24        21.86 
TCGA-B0-5098 TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5108 TCGA-B0-5116 TCGA-B0-5400 
       52.08        52.54        30.48        29.95        21.60        37.22 
TCGA-B0-5694 TCGA-B0-5701 TCGA-B0-5706 TCGA-B2-4098 TCGA-B2-5633 TCGA-B2-5641 
       15.78        56.94        79.36         1.68        11.77        21.57 
TCGA-B4-5832 TCGA-B4-5835 TCGA-B8-4143 TCGA-B8-4620 TCGA-B8-4621 TCGA-B8-5158 
        0.23         0.53        23.31        25.55        25.91        20.91 
TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5550 TCGA-B8-5551 TCGA-B8-A54I TCGA-BP-4161 
        1.18        27.02        14.27         0.49         4.93        90.28 
TCGA-BP-4167 TCGA-BP-4173 TCGA-BP-4174 TCGA-BP-4176 TCGA-BP-4326 TCGA-BP-4338 
       89.36        62.24        61.78        64.27        53.42        93.99 
TCGA-BP-4342 TCGA-BP-4343 TCGA-BP-4352 TCGA-BP-4353 TCGA-BP-4354 TCGA-BP-4761 
       74.17        62.86        11.31        12.33        33.99         5.98 
TCGA-BP-4771 TCGA-BP-4781 TCGA-BP-4787 TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4799 
        5.33        68.38        15.78        36.39        10.98        37.25 
TCGA-BP-4803 TCGA-BP-4804 TCGA-BP-4959 TCGA-BP-4960 TCGA-BP-4962 TCGA-BP-4963 
        6.71        47.97        87.45        71.41        58.68        60.30 
TCGA-BP-4967 TCGA-BP-4971 TCGA-BP-4977 TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4986 
        6.74        48.89        14.93        46.45        31.30        25.81 
TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4992 TCGA-BP-5000 TCGA-BP-5009 TCGA-BP-5169 
       27.22         3.88        16.47        18.51        36.23         6.35 
TCGA-BP-5170 TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5189 TCGA-BP-5191 
       79.30        30.64        62.86        74.40        27.02        31.79 
TCGA-BP-5195 TCGA-BP-5196 TCGA-BP-5198 TCGA-CJ-4635 TCGA-CJ-4636 TCGA-CJ-4637 
       24.62        33.47        19.82        46.55        63.25        73.22 
TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 TCGA-CJ-4868 TCGA-CJ-4869 TCGA-CJ-4871 
       14.17        65.69        54.61        21.24        83.97        79.66 
TCGA-CJ-4872 TCGA-CJ-4873 TCGA-CJ-4881 TCGA-CJ-4882 TCGA-CJ-4884 TCGA-CJ-4888 
       47.18        74.27        66.21        61.91        57.83        51.52 
TCGA-CJ-4890 TCGA-CJ-4891 TCGA-CJ-4895 TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4902 
       68.55        26.93        39.45        56.35        47.67        49.97 
TCGA-CJ-4912 TCGA-CJ-4920 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5676 TCGA-CJ-5677 
       54.48         4.57        18.81        63.88        84.66        25.71 
TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5686 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 
       18.87        22.32        67.00        60.99        53.42        75.58 
TCGA-CJ-6031 TCGA-CJ-6033 TCGA-CW-5588 TCGA-CW-5590 TCGA-CW-6087 TCGA-CW-6090 
       62.66         7.36        66.28        35.34         1.35        83.90 
TCGA-CW-6097 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4860 TCGA-CZ-4861 
       18.74        46.16        47.08        63.88         6.77        14.66 
TCGA-CZ-4862 TCGA-CZ-4865 TCGA-CZ-4866 TCGA-CZ-5452 TCGA-CZ-5454 TCGA-CZ-5456 
       60.59         5.46        61.41        58.82        23.74        56.28 
TCGA-CZ-5459 TCGA-CZ-5461 TCGA-CZ-5462 TCGA-CZ-5464 TCGA-CZ-5466 TCGA-CZ-5468 
       55.33        10.85        10.22        57.21        22.52         1.94 
TCGA-CZ-5469 TCGA-CZ-5470 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5987 TCGA-CZ-5988 
       31.10        12.69        67.96        65.65        14.30        22.78 
TCGA-DV-5568 TCGA-EU-5905 TCGA-EU-5907 TCGA-G6-A5PC 
       12.16         3.91         4.18         7.96 

subtype1 subtype2 subtype3 
    0.23     0.07     0.23 
subtype1 subtype2 subtype3 
  120.59   112.80   109.91 
subtype1 subtype2 subtype3 
  39.305   37.940   30.870 
[1] "0.2 - 120.6 (39.3)" "0.1 - 112.8 (37.9)" "0.2 - 109.9 (30.9)"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
  [7] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [25] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [79] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [85] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [91] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[115] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[121] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[145] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[157] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[163] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[169] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[181] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[187] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[193] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[205] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[211] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[223] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[229] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[235] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[241] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[247] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[253] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[259] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[265] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[283] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[289] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[295] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[301] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[307] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[313] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[319] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[325] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[331] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[337] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[343] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[349] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[355] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[361] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[367] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[373] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[379] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[385] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[391] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[397] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[403] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[409] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[415] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[421] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[427] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[433] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[439] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[445] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[451] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[457] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[463] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[469] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[475] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[481] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[487] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[493] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[499] "subtype1" "subtype3" "subtype3" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
  [7] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [25] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [79] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [85] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [91] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[115] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[121] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[145] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[157] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[163] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[169] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[181] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[187] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[193] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[205] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[211] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[223] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[229] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[235] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[241] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[247] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[253] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[259] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[265] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[283] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[289] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[295] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[301] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[307] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[313] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[319] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[325] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[331] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[337] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[343] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[349] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[355] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[361] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[367] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[373] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[379] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[385] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[391] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[397] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[403] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[409] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[415] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[421] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[427] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[433] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[439] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[445] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[451] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[457] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[463] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[469] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[475] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[481] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[487] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[493] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[499] "subtype1" "subtype3" "subtype3" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
  [7] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [25] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [79] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [85] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [91] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[115] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[121] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[145] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[157] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[163] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[169] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[181] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[187] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[193] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[205] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[211] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[223] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[229] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[235] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[241] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[247] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[253] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[259] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[265] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[283] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[289] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[295] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[301] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[307] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[313] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[319] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[325] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[331] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[337] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[343] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[349] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[355] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[361] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[367] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[373] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[379] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[385] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[391] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[397] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[403] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[409] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[415] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[421] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[427] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[433] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[439] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[445] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[451] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[457] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[463] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[469] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[475] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[481] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[487] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[493] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[499] "subtype1" "subtype3" "subtype3" "subtype1"
D7V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1     125       22        41       23
  subtype2      62       12        22       12
  subtype3      57       21        61       45
D7V3, multiclass
          vv
clus        T1  T2  T3  T4
  subtype1 125  25  59   2
  subtype2  63  13  29   3
  subtype3  62  28  88   6
D7V4, multiclass
D7V5, binary
          cls
clus         0   1
  subtype1 100   2
  subtype2  51   3
  subtype3  84  12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  100    2
  subtype2   51    3
  subtype3   84   12
   clus
vv  subtype1 subtype2 subtype3
  0      100       51       84
  1        2        3       12
          vv
clus        M0  M1  MX
  subtype1 186  23   2
  subtype2  97  11   0
  subtype3 138  45   1
D7V6, multiclass
D7V7, binary
          cls
clus         0   1
  subtype1  94 117
  subtype2  35  73
  subtype3  43 141
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   94  117
  subtype2   35   73
  subtype3   43  141
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       94       35       43
  MALE        117       73      141
D7V8, continuous
D7V9, continuous
[1] "Remove cluster labels:" "subtype1"              
clus
subtype1 subtype3 
       2        3 
[1] "subtype3" "subtype3" "subtype3"

Clustering(8) Variable = MRNASEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2        0   1
  subtype1 174  46
  subtype2  99 102
  subtype3  63  18
subtype1 subtype2 subtype3 
     220      201       81 
subtype1 subtype2 subtype3 
      46      102       18 
$subtype1
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3325 
       36.82        47.21        49.58        48.59        38.99        24.69 
TCGA-A3-3326 TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3349 TCGA-A3-3351 
       37.38        23.21        48.82        31.07        45.53        29.92 
TCGA-A3-3352 TCGA-A3-3358 TCGA-A3-3359 TCGA-A3-3365 TCGA-A3-3367 TCGA-A3-3370 
       18.44        42.97        82.32        28.70        74.63        74.76 
TCGA-A3-3372 TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3380 TCGA-A3-3383 TCGA-A3-3385 
       24.16        53.29        35.18        18.64        28.31        65.52 
TCGA-AK-3429 TCGA-AK-3434 TCGA-AK-3444 TCGA-AK-3450 TCGA-AK-3454 TCGA-AK-3455 
       66.31        68.61        48.36        58.49        28.73        22.45 
TCGA-AK-3458 TCGA-AK-3460 TCGA-AK-3461 TCGA-B0-4693 TCGA-B0-4701 TCGA-B0-4706 
       38.40        31.27        28.04         2.53         7.82         0.85 
TCGA-B0-4710 TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4811 TCGA-B0-4818 TCGA-B0-4824 
        3.16         3.25        20.25        46.59        16.77        54.48 
TCGA-B0-4828 TCGA-B0-4833 TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4845 TCGA-B0-4846 
       10.09        78.44        27.42        53.88        65.29        39.45 
TCGA-B0-4847 TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-4945 TCGA-B0-5077 TCGA-B0-5085 
       26.07         2.27        36.85        70.52        43.30        25.32 
TCGA-B0-5099 TCGA-B0-5102 TCGA-B0-5104 TCGA-B0-5106 TCGA-B0-5110 TCGA-B0-5113 
       15.95        90.87        90.48        52.54        35.90        11.80 
TCGA-B0-5115 TCGA-B0-5119 TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5690 TCGA-B0-5692 
       26.20         1.94        18.21        21.44        79.17        48.89 
TCGA-B0-5693 TCGA-B0-5696 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5703 TCGA-B0-5705 
      101.13        56.78        84.92        90.12        39.55       120.59 
TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5712 TCGA-B0-5713 TCGA-B2-3924 TCGA-B2-4099 
       47.97        96.36        89.49        61.32        35.90        12.30 
TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5635 TCGA-B2-A4SR TCGA-B4-5377 TCGA-B4-5834 
       21.30        31.30        10.36        16.67         9.57         1.25 
TCGA-B4-5836 TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 
        4.64         0.36         0.23        16.80        27.16        27.55 
TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-4622 TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5553 
       25.05        24.66        23.01        23.74         0.85        14.30 
TCGA-B8-A54J TCGA-BP-4158 TCGA-BP-4161 TCGA-BP-4162 TCGA-BP-4164 TCGA-BP-4165 
        2.17       111.02        90.28       101.06        32.61        99.85 
TCGA-BP-4170 TCGA-BP-4173 TCGA-BP-4174 TCGA-BP-4325 TCGA-BP-4327 TCGA-BP-4330 
       77.03        62.24        61.78        97.45         3.58        62.07 
TCGA-BP-4331 TCGA-BP-4332 TCGA-BP-4335 TCGA-BP-4340 TCGA-BP-4341 TCGA-BP-4344 
       80.68        37.25        15.16        18.48        52.24        54.77 
TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4349 TCGA-BP-4351 TCGA-BP-4355 TCGA-BP-4758 
       49.08        44.94        12.23        31.89        31.33        72.59 
TCGA-BP-4765 TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4774 TCGA-BP-4775 TCGA-BP-4776 
       71.80        48.07        13.15        61.97        60.59        13.51 
TCGA-BP-4777 TCGA-BP-4789 TCGA-BP-4961 TCGA-BP-4963 TCGA-BP-4965 TCGA-BP-4968 
       56.91        48.95        63.62        60.30        61.51        57.40 
TCGA-BP-4969 TCGA-BP-4973 TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4977 
       58.98        45.50         7.23        47.11        53.65        14.93 
TCGA-BP-4981 TCGA-BP-4982 TCGA-BP-4987 TCGA-BP-4989 TCGA-BP-4991 TCGA-BP-4993 
       36.07        33.34        36.95         3.88        46.45         5.82 
TCGA-BP-4999 TCGA-BP-5000 TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5006 TCGA-BP-5007 
       41.62        18.51        38.70        37.02        27.62        37.48 
TCGA-BP-5168 TCGA-BP-5173 TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5181 TCGA-BP-5183 
       48.10         1.78        52.27         9.63        49.15        42.44 
TCGA-BP-5184 TCGA-BP-5185 TCGA-BP-5186 TCGA-BP-5190 TCGA-BP-5192 TCGA-BP-5194 
       37.25        37.22        22.78        33.24        23.47        13.41 
TCGA-BP-5200 TCGA-BP-5201 TCGA-BP-5202 TCGA-CJ-4634 TCGA-CJ-4639 TCGA-CJ-4643 
       34.95        31.27         0.95        59.84        75.88        58.95 
TCGA-CJ-4644 TCGA-CJ-4870 TCGA-CJ-4874 TCGA-CJ-4875 TCGA-CJ-4876 TCGA-CJ-4878 
       11.05        49.25        75.06        77.36        64.27        71.87 
TCGA-CJ-4885 TCGA-CJ-4886 TCGA-CJ-4887 TCGA-CJ-4892 TCGA-CJ-4893 TCGA-CJ-4894 
       69.86        64.18        30.64        50.01        24.66        27.65 
TCGA-CJ-4897 TCGA-CJ-4899 TCGA-CJ-4902 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 
       59.44        50.24        49.97        51.29        58.92        49.18 
TCGA-CJ-4908 TCGA-CJ-4916 TCGA-CJ-5675 TCGA-CJ-5678 TCGA-CJ-5686 TCGA-CJ-6032 
       50.33        45.14        79.89        18.87        67.00        83.77 
TCGA-CW-5583 TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-6088 TCGA-CW-6093 TCGA-CZ-4853 
       81.83        85.78        73.18       105.93       103.43        25.45 
TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-5451 TCGA-CZ-5453 
        0.59        58.75        63.39        93.04        63.42         0.82 
TCGA-CZ-5455 TCGA-CZ-5457 TCGA-CZ-5459 TCGA-CZ-5460 TCGA-CZ-5463 TCGA-CZ-5465 
       18.44        55.33        55.33        47.01        21.76        47.54 
TCGA-CZ-5470 TCGA-CZ-5982 TCGA-CZ-5986 TCGA-CZ-5989 TCGA-DV-5568 TCGA-DV-5575 
       12.69        80.19        12.26        62.63        12.16        56.84 
TCGA-EU-5904 TCGA-EU-5906 TCGA-EU-5907 TCGA-GK-A6C7 
       18.12         6.77         4.18         2.01 

$subtype2
TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3323 
        0.53        39.16        49.08        49.02        37.15        36.36 
TCGA-A3-3335 TCGA-A3-3346 TCGA-A3-3347 TCGA-A3-3357 TCGA-A3-3378 TCGA-A3-3382 
       21.86         4.50        52.93        88.37        20.71        18.87 
TCGA-A3-3387 TCGA-AK-3425 TCGA-AK-3426 TCGA-AK-3436 TCGA-AK-3445 TCGA-AK-3451 
       20.28       109.91        29.10        67.20        42.08        48.69 
TCGA-B0-4688 TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4697 
        3.32         1.41         4.57         3.48        28.47        19.00 
TCGA-B0-4698 TCGA-B0-4700 TCGA-B0-4703 TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4713 
        1.38        65.10         5.98        19.73        43.96         6.64 
TCGA-B0-4810 TCGA-B0-4813 TCGA-B0-4814 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 
       15.72         0.59         5.52        52.21        45.07        33.50 
TCGA-B0-4819 TCGA-B0-4821 TCGA-B0-4822 TCGA-B0-4827 TCGA-B0-4836 TCGA-B0-4837 
        6.02        40.44        36.53        29.10        40.70        45.30 
TCGA-B0-4842 TCGA-B0-4843 TCGA-B0-4844 TCGA-B0-4848 TCGA-B0-5075 TCGA-B0-5080 
       56.68        11.64        10.29        29.03        20.94        11.24 
TCGA-B0-5081 TCGA-B0-5084 TCGA-B0-5088 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5095 
       11.90         7.30        18.51        15.09        10.95         8.05 
TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5098 TCGA-B0-5107 TCGA-B0-5108 TCGA-B0-5109 
        2.24        21.86        52.08        30.48        29.95        19.30 
TCGA-B0-5116 TCGA-B0-5120 TCGA-B0-5400 TCGA-B0-5402 TCGA-B0-5694 TCGA-B0-5701 
       21.60        16.21        37.22        14.76        15.78        56.94 
TCGA-B0-5706 TCGA-B0-5709 TCGA-B2-5633 TCGA-B2-5641 TCGA-B4-5832 TCGA-B4-5838 
       79.36       102.48        11.77        21.57         0.23         5.46 
TCGA-B8-4143 TCGA-B8-4620 TCGA-B8-5158 TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5545 
       23.31        25.55        20.91         1.18        27.02        17.16 
TCGA-B8-5549 TCGA-B8-5550 TCGA-B8-5551 TCGA-B8-A54I TCGA-BP-4163 TCGA-BP-4166 
        6.38        14.27         0.49         4.93        93.34         0.43 
TCGA-BP-4167 TCGA-BP-4169 TCGA-BP-4176 TCGA-BP-4326 TCGA-BP-4329 TCGA-BP-4337 
       89.36        23.05        64.27        53.42        27.78         0.07 
TCGA-BP-4338 TCGA-BP-4342 TCGA-BP-4343 TCGA-BP-4345 TCGA-BP-4352 TCGA-BP-4353 
       93.99        74.17        62.86        49.84        11.31        12.33 
TCGA-BP-4354 TCGA-BP-4761 TCGA-BP-4770 TCGA-BP-4771 TCGA-BP-4781 TCGA-BP-4782 
       33.99         5.98        10.82         5.33        68.38        11.64 
TCGA-BP-4787 TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4799 TCGA-BP-4803 TCGA-BP-4804 
       15.78        36.39        10.98        37.25         6.71        47.97 
TCGA-BP-4959 TCGA-BP-4960 TCGA-BP-4962 TCGA-BP-4964 TCGA-BP-4967 TCGA-BP-4971 
       87.45        71.41        58.68        61.22         6.74        48.89 
TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4988 TCGA-BP-4992 TCGA-BP-5009 
       46.45        31.30        25.81        27.22        16.47        36.23 
TCGA-BP-5010 TCGA-BP-5169 TCGA-BP-5170 TCGA-BP-5174 TCGA-BP-5175 TCGA-BP-5178 
       28.87         6.35        79.30        74.20        30.64        62.86 
TCGA-BP-5180 TCGA-BP-5187 TCGA-BP-5189 TCGA-BP-5191 TCGA-BP-5195 TCGA-BP-5196 
       74.40        13.35        27.02        31.79        24.62        33.47 
TCGA-BP-5198 TCGA-BP-5199 TCGA-CJ-4635 TCGA-CJ-4636 TCGA-CJ-4637 TCGA-CJ-4638 
       19.82        44.55        46.55        63.25        73.22        14.17 
TCGA-CJ-4640 TCGA-CJ-4641 TCGA-CJ-4868 TCGA-CJ-4869 TCGA-CJ-4871 TCGA-CJ-4872 
       65.69        54.61        21.24        83.97        79.66        47.18 
TCGA-CJ-4873 TCGA-CJ-4881 TCGA-CJ-4882 TCGA-CJ-4884 TCGA-CJ-4888 TCGA-CJ-4890 
       74.27        66.21        61.91        57.83        51.52        68.55 
TCGA-CJ-4891 TCGA-CJ-4895 TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4912 TCGA-CJ-4918 
       26.93        39.45        56.35        47.67        54.48         3.06 
TCGA-CJ-4920 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5672 TCGA-CJ-5676 TCGA-CJ-5677 
        4.57        18.81        63.88        72.00        84.66        25.71 
TCGA-CJ-5679 TCGA-CJ-5680 TCGA-CJ-5682 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 
       22.32        25.25        61.91        60.99        53.42        75.58 
TCGA-CJ-6031 TCGA-CJ-6033 TCGA-CW-5580 TCGA-CW-5588 TCGA-CW-5590 TCGA-CW-6087 
       62.66         7.36        64.57        66.28        35.34         1.35 
TCGA-CW-6090 TCGA-CW-6097 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4860 
       83.90        18.74        46.16        47.08        63.88         6.77 
TCGA-CZ-4861 TCGA-CZ-4862 TCGA-CZ-4865 TCGA-CZ-4866 TCGA-CZ-5452 TCGA-CZ-5454 
       14.66        60.59         5.46        61.41        58.82        23.74 
TCGA-CZ-5456 TCGA-CZ-5458 TCGA-CZ-5461 TCGA-CZ-5462 TCGA-CZ-5464 TCGA-CZ-5466 
       56.28        56.94        10.85        10.22        57.21        22.52 
TCGA-CZ-5467 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5987 
        2.40         1.94        31.10        67.96        65.65        14.30 
TCGA-CZ-5988 TCGA-EU-5905 TCGA-G6-A5PC 
       22.78         3.91         7.96 

$subtype3
TCGA-A3-3313 TCGA-A3-3328 TCGA-A3-3362 TCGA-A3-3363 TCGA-A3-3374 TCGA-AK-3427 
       24.16        45.53        51.25        10.49        43.20        84.36 
TCGA-AK-3428 TCGA-AK-3431 TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3447 
       73.08        60.92        72.07        57.37        46.78        40.01 
TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3465 TCGA-AS-3777 TCGA-B0-4699 TCGA-B0-4823 
       45.93        37.58        12.13        40.70         3.62        14.93 
TCGA-B0-4834 TCGA-B0-4841 TCGA-B0-5083 TCGA-B0-5100 TCGA-B0-5117 TCGA-B0-5691 
       68.71         6.71        34.36        62.89        17.59       112.80 
TCGA-B0-5695 TCGA-B0-5697 TCGA-B0-5700 TCGA-B0-5702 TCGA-B0-5707 TCGA-B0-5812 
       46.68        60.33        35.57        52.77        92.98        97.41 
TCGA-B2-3923 TCGA-B2-4098 TCGA-B2-5636 TCGA-B2-5639 TCGA-B4-5378 TCGA-B4-5835 
       32.61         1.68        30.21        13.71         5.75         0.53 
TCGA-B8-4619 TCGA-B8-4621 TCGA-B8-5165 TCGA-B8-5546 TCGA-B8-5552 TCGA-BP-4159 
       17.19        25.91        24.23        16.60        12.89        85.51 
TCGA-BP-4160 TCGA-BP-4177 TCGA-BP-4334 TCGA-BP-4756 TCGA-BP-4759 TCGA-BP-4760 
       94.72        54.90        21.21        12.30        77.98        77.62 
TCGA-BP-4762 TCGA-BP-4763 TCGA-BP-4769 TCGA-BP-4784 TCGA-BP-4790 TCGA-BP-4795 
       44.15        41.75        61.68        60.95        36.53        20.38 
TCGA-BP-4801 TCGA-BP-4807 TCGA-BP-4970 TCGA-BP-4972 TCGA-BP-4994 TCGA-BP-4995 
       36.95         6.94        14.24        49.38        43.00        45.07 
TCGA-BP-4998 TCGA-BP-5008 TCGA-BP-5182 TCGA-CJ-4642 TCGA-CJ-4889 TCGA-CJ-4907 
       30.64        35.21        38.30        53.52        63.98        49.28 
TCGA-CJ-5681 TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-5689 TCGA-CW-5581 TCGA-CW-5584 
       18.15        62.10        73.35        53.26        92.02         5.39 
TCGA-CW-5589 TCGA-CW-5591 TCGA-DV-5565 TCGA-DV-5566 TCGA-DV-5567 TCGA-DV-5569 
       78.15        74.63        43.69        45.96        48.33        11.67 
TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5576 
       37.15        23.77        23.90 

subtype1 subtype2 subtype3 
    0.23     0.07     0.53 
subtype1 subtype2 subtype3 
  120.59   109.91   112.80 
subtype1 subtype2 subtype3 
    39.5     29.1     43.0 
[1] "0.2 - 120.6 (39.5)" "0.1 - 109.9 (29.1)" "0.5 - 112.8 (43.0)"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [37] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[103] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[115] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[145] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[151] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[157] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[169] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[175] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[181] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[187] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[193] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[205] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[211] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[217] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[223] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[229] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[235] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[241] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[247] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[253] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[259] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[265] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[271] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[283] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[289] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[295] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[301] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[307] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[313] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[319] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[325] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[331] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[337] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[343] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[349] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[355] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[361] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[373] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[379] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[385] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[391] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[397] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[403] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[409] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[415] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[421] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[427] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[433] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[439] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[445] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[451] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[457] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[463] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[469] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[475] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[481] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[487] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[493] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[499] "subtype1" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [37] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[103] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[115] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[145] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[151] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[157] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[169] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[175] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[181] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[187] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[193] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[205] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[211] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[217] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[223] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[229] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[235] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[241] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[247] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[253] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[259] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[265] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[271] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[283] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[289] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[295] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[301] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[307] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[313] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[319] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[325] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[331] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[337] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[343] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[349] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[355] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[361] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[373] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[379] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[385] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[391] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[397] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[403] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[409] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[415] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[421] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[427] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[433] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[439] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[445] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[451] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[457] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[463] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[469] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[475] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[481] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[487] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[493] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[499] "subtype1" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [37] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[103] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[115] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[145] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[151] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[157] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[169] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[175] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[181] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[187] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[193] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[205] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[211] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[217] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[223] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[229] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[235] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[241] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[247] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[253] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[259] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[265] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[271] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[283] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[289] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[295] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[301] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[307] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[313] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[319] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[325] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[331] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[337] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[343] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[349] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[355] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[361] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[373] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[379] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[385] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[391] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[397] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[403] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[409] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[415] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[421] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[427] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[433] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[439] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[445] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[451] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[457] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[463] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[469] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[475] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[481] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[487] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[493] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[499] "subtype1" "subtype1" "subtype2" "subtype1"
D8V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1     129       25        46       21
  subtype2      57       21        69       54
  subtype3      58        9         9        5
D8V3, multiclass
          vv
clus        T1  T2  T3  T4
  subtype1 129  29  63   0
  subtype2  62  27 102  10
  subtype3  59  10  11   1
D8V4, multiclass
D8V5, binary
          cls
clus         0   1
  subtype1 102   1
  subtype2  99  14
  subtype3  34   2
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  102    1
  subtype2   99   14
  subtype3   34    2
   clus
vv  subtype1 subtype2 subtype3
  0      102       99       34
  1        1       14        2
          vv
clus        M0  M1  MX
  subtype1 197  22   2
  subtype2 148  52   1
  subtype3  76   5   0
D8V6, multiclass
D8V7, binary
          cls
clus         0   1
  subtype1  96 125
  subtype2  52 149
  subtype3  24  57
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   96  125
  subtype2   52  149
  subtype3   24   57
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       96       52       24
  MALE        125      149       57
D8V8, continuous
D8V9, continuous
[1] "Remove cluster labels:" "subtype1"               "subtype2"              
[4] "subtype3"              
clus
subtype1 subtype2 subtype3 
       2        2        1 
character(0)

Clustering(9) Variable = MIRSEQ_CNMF
D9V1, survival
          sevent
clus2        0   1
  subtype1  77  32
  subtype2 157  49
  subtype3  88  83
subtype1 subtype2 subtype3 
     109      206      171 
subtype1 subtype2 subtype3 
      32       49       83 
$subtype1
TCGA-A3-3308 TCGA-A3-3313 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3347 TCGA-A3-3349 
        0.53        24.16        49.08        49.02        52.93        45.53 
TCGA-A3-3362 TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3387 TCGA-AK-3425 TCGA-AK-3431 
       51.25        53.29        35.18        20.28       109.91        60.92 
TCGA-AK-3461 TCGA-AK-3465 TCGA-B0-4688 TCGA-B0-4697 TCGA-B0-4700 TCGA-B0-4703 
       28.04        12.13         3.32        19.00        65.10         5.98 
TCGA-B0-4811 TCGA-B0-4816 TCGA-B0-4823 TCGA-B0-4827 TCGA-B0-4839 TCGA-B0-4843 
       46.59        45.07        14.93        29.10        53.88        11.64 
TCGA-B0-4945 TCGA-B0-5080 TCGA-B0-5095 TCGA-B0-5100 TCGA-B0-5108 TCGA-B0-5119 
       70.52        11.24         8.05        62.89        29.95         1.94 
TCGA-B0-5120 TCGA-B0-5691 TCGA-B0-5702 TCGA-B0-5709 TCGA-B0-5710 TCGA-B0-5812 
       16.21       112.80        52.77       102.48        47.97        97.41 
TCGA-B2-5636 TCGA-B4-5836 TCGA-B4-5838 TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5545 
       30.21         4.64         5.46         1.18        27.02        17.16 
TCGA-B8-5550 TCGA-B8-5552 TCGA-BP-4160 TCGA-BP-4166 TCGA-BP-4167 TCGA-BP-4169 
       14.27        12.89        94.72         0.43        89.36        23.05 
TCGA-BP-4173 TCGA-BP-4177 TCGA-BP-4331 TCGA-BP-4332 TCGA-BP-4337 TCGA-BP-4341 
       62.24        54.90        80.68        37.25         0.07        52.24 
TCGA-BP-4343 TCGA-BP-4345 TCGA-BP-4353 TCGA-BP-4760 TCGA-BP-4762 TCGA-BP-4763 
       62.86        49.84        12.33        77.62        44.15        41.75 
TCGA-BP-4765 TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4795 
       71.80        61.68        10.82        48.95        36.53        20.38 
TCGA-BP-4801 TCGA-BP-4804 TCGA-BP-4807 TCGA-BP-4969 TCGA-BP-4970 TCGA-BP-4971 
       36.95        47.97         6.94        58.98        14.24        48.89 
TCGA-BP-4972 TCGA-BP-5010 TCGA-BP-5170 TCGA-BP-5177 TCGA-BP-5182 TCGA-BP-5184 
       49.38        28.87        79.30         9.63        38.30        37.25 
TCGA-BP-5186 TCGA-BP-5196 TCGA-BP-5198 TCGA-BP-5199 TCGA-CJ-4634 TCGA-CJ-4636 
       22.78        33.47        19.82        44.55        59.84        63.25 
TCGA-CJ-4642 TCGA-CJ-4872 TCGA-CJ-4882 TCGA-CJ-4886 TCGA-CJ-4889 TCGA-CJ-4890 
       53.52        47.18        61.91        64.18        63.98        68.55 
TCGA-CJ-4902 TCGA-CJ-4905 TCGA-CJ-4907 TCGA-CJ-4908 TCGA-CJ-4918 TCGA-CJ-5671 
       49.97        49.18        49.28        50.33         3.06        63.88 
TCGA-CJ-5680 TCGA-CJ-6031 TCGA-CW-5583 TCGA-CW-5588 TCGA-CW-6088 TCGA-CW-6090 
       25.25        62.66        81.83        66.28       105.93        83.90 
TCGA-CZ-4860 TCGA-CZ-5988 TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5575 TCGA-DV-5576 
        6.77        22.78        37.15        23.77        56.84        23.90 
TCGA-EU-5905 
        3.91 

$subtype2
TCGA-A3-3307 TCGA-A3-3311 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3323 TCGA-A3-3324 
       47.21        39.16        49.58        48.59        36.36        38.99 
TCGA-A3-3326 TCGA-A3-3331 TCGA-A3-3351 TCGA-A3-3358 TCGA-A3-3365 TCGA-A3-3367 
       37.38        48.82        29.92        42.97        28.70        74.63 
TCGA-A3-3370 TCGA-A3-3372 TCGA-A3-3380 TCGA-A3-3383 TCGA-A3-3385 TCGA-AK-3428 
       74.76        24.16        18.64        28.31        65.52        73.08 
TCGA-AK-3429 TCGA-AK-3434 TCGA-AK-3444 TCGA-AK-3450 TCGA-AK-3454 TCGA-AK-3455 
       66.31        68.61        48.36        58.49        28.73        22.45 
TCGA-AK-3460 TCGA-B0-4693 TCGA-B0-4701 TCGA-B0-4706 TCGA-B0-4710 TCGA-B0-4714 
       31.27         2.53         7.82         0.85         3.16         3.25 
TCGA-B0-4814 TCGA-B0-4818 TCGA-B0-4824 TCGA-B0-4828 TCGA-B0-4833 TCGA-B0-4838 
        5.52        16.77        54.48        10.09        78.44        27.42 
TCGA-B0-4841 TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 TCGA-B0-4852 
        6.71        65.29        39.45        26.07         2.27        36.85 
TCGA-B0-5077 TCGA-B0-5085 TCGA-B0-5099 TCGA-B0-5102 TCGA-B0-5104 TCGA-B0-5110 
       43.30        25.32        15.95        90.87        90.48        35.90 
TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5116 TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5402 
       11.80        26.20        21.60        18.21        21.44        14.76 
TCGA-B0-5690 TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5696 
       79.17        48.89       101.13        15.78        46.68        56.78 
TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5703 TCGA-B0-5705 TCGA-B0-5711 
       84.92        90.12        35.57        39.55       120.59        96.36 
TCGA-B0-5712 TCGA-B0-5713 TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 
       89.49        61.32        35.90        12.30        21.30        31.30 
TCGA-B2-5639 TCGA-B2-A4SR TCGA-B4-5377 TCGA-B4-5834 TCGA-B4-5843 TCGA-B4-5844 
       13.71        16.67         9.57         1.25         0.36         0.23 
TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-4622 
       16.80        27.16        27.55        25.05        24.66        23.01 
TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5165 TCGA-B8-5546 TCGA-B8-5549 TCGA-B8-5553 
       23.74         0.85        24.23        16.60         6.38        14.30 
TCGA-B8-A54J TCGA-BP-4158 TCGA-BP-4159 TCGA-BP-4161 TCGA-BP-4162 TCGA-BP-4164 
        2.17       111.02        85.51        90.28       101.06        32.61 
TCGA-BP-4165 TCGA-BP-4174 TCGA-BP-4325 TCGA-BP-4327 TCGA-BP-4329 TCGA-BP-4330 
       99.85        61.78        97.45         3.58        27.78        62.07 
TCGA-BP-4335 TCGA-BP-4340 TCGA-BP-4344 TCGA-BP-4347 TCGA-BP-4355 TCGA-BP-4756 
       15.16        18.48        54.77        44.94        31.33        12.30 
TCGA-BP-4758 TCGA-BP-4759 TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4775 TCGA-BP-4776 
       72.59        77.98        48.07        13.15        60.59        13.51 
TCGA-BP-4961 TCGA-BP-4965 TCGA-BP-4973 TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 
       63.62        61.51        45.50         7.23        47.11        53.65 
TCGA-BP-4981 TCGA-BP-4982 TCGA-BP-4987 TCGA-BP-4991 TCGA-BP-4992 TCGA-BP-4993 
       36.07        33.34        36.95        46.45        16.47         5.82 
TCGA-BP-4995 TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5007 TCGA-BP-5168 TCGA-BP-5173 
       45.07        38.70        37.02        37.48        48.10         1.78 
TCGA-BP-5174 TCGA-BP-5176 TCGA-BP-5181 TCGA-BP-5183 TCGA-BP-5185 TCGA-BP-5187 
       74.20        52.27        49.15        42.44        37.22        13.35 
TCGA-BP-5190 TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5195 TCGA-BP-5200 TCGA-BP-5201 
       33.24        23.47        13.41        24.62        34.95        31.27 
TCGA-BP-5202 TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4644 TCGA-CJ-4870 TCGA-CJ-4875 
        0.95        75.88        58.95        11.05        49.25        77.36 
TCGA-CJ-4878 TCGA-CJ-4885 TCGA-CJ-4892 TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4897 
       71.87        69.86        50.01        24.66        27.65        59.44 
TCGA-CJ-4899 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4916 TCGA-CJ-4920 TCGA-CJ-5672 
       50.24        51.29        58.92        45.14         4.57        72.00 
TCGA-CJ-5675 TCGA-CJ-5681 TCGA-CJ-5682 TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-5686 
       79.89        18.15        61.91        62.10        73.35        67.00 
TCGA-CJ-6032 TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-5589 
       83.77        92.02         5.39        85.78        73.18        78.15 
TCGA-CW-6093 TCGA-CZ-4853 TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4862 TCGA-CZ-4863 
      103.43        25.45         0.59        58.75        60.59        63.39 
TCGA-CZ-4864 TCGA-CZ-4865 TCGA-CZ-4866 TCGA-CZ-5451 TCGA-CZ-5453 TCGA-CZ-5454 
       93.04         5.46        61.41        63.42         0.82        23.74 
TCGA-CZ-5455 TCGA-CZ-5457 TCGA-CZ-5458 TCGA-CZ-5459 TCGA-CZ-5460 TCGA-CZ-5462 
       18.44        55.33        56.94        55.33        47.01        10.22 
TCGA-CZ-5463 TCGA-CZ-5465 TCGA-CZ-5467 TCGA-CZ-5982 TCGA-CZ-5986 TCGA-CZ-5989 
       21.76        47.54         2.40        80.19        12.26        62.63 
TCGA-DV-5565 TCGA-DV-5566 TCGA-DV-5568 TCGA-DV-5569 TCGA-EU-5904 TCGA-EU-5906 
       43.69        45.96        12.16        11.67        18.12         6.77 
TCGA-EU-5907 TCGA-GK-A6C7 
        4.18         2.01 

$subtype3
TCGA-A3-3319 TCGA-A3-3346 TCGA-A3-3357 TCGA-A3-3363 TCGA-A3-3374 TCGA-A3-3378 
       37.15         4.50        88.37        10.49        43.20        20.71 
TCGA-A3-3382 TCGA-AK-3426 TCGA-AK-3427 TCGA-AK-3430 TCGA-AK-3433 TCGA-AK-3436 
       18.87        29.10        84.36        15.78        72.07        67.20 
TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3445 TCGA-AK-3447 TCGA-AK-3451 TCGA-AK-3453 
       57.37        46.78        42.08        40.01        48.69        45.93 
TCGA-AK-3456 TCGA-AK-3458 TCGA-AS-3777 TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 
       37.58        38.40        40.70         1.41         4.57         3.48 
TCGA-B0-4696 TCGA-B0-4698 TCGA-B0-4699 TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4713 
       28.47         1.38         3.62        19.73        43.96         6.64 
TCGA-B0-4718 TCGA-B0-4810 TCGA-B0-4813 TCGA-B0-4815 TCGA-B0-4817 TCGA-B0-4819 
       20.25        15.72         0.59        52.21        33.50         6.02 
TCGA-B0-4821 TCGA-B0-4822 TCGA-B0-4834 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4842 
       40.44        36.53        68.71        40.70        45.30        56.68 
TCGA-B0-4844 TCGA-B0-4848 TCGA-B0-5075 TCGA-B0-5081 TCGA-B0-5083 TCGA-B0-5084 
       10.29        29.03        20.94        11.90        34.36         7.30 
TCGA-B0-5088 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5098 
       18.51        15.09        10.95         2.24        21.86        52.08 
TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5109 TCGA-B0-5117 TCGA-B0-5400 TCGA-B0-5697 
       52.54        30.48        19.30        17.59        37.22        60.33 
TCGA-B0-5701 TCGA-B0-5706 TCGA-B0-5707 TCGA-B2-3923 TCGA-B2-4098 TCGA-B2-5633 
       56.94        79.36        92.98        32.61         1.68        11.77 
TCGA-B2-5635 TCGA-B2-5641 TCGA-B4-5378 TCGA-B4-5832 TCGA-B4-5835 TCGA-B8-4143 
       10.36        21.57         5.75         0.23         0.53        23.31 
TCGA-B8-4619 TCGA-B8-4620 TCGA-B8-4621 TCGA-B8-5158 TCGA-B8-5551 TCGA-B8-A54I 
       17.19        25.55        25.91        20.91         0.49         4.93 
TCGA-BP-4163 TCGA-BP-4176 TCGA-BP-4326 TCGA-BP-4334 TCGA-BP-4338 TCGA-BP-4342 
       93.34        64.27        53.42        21.21        93.99        74.17 
TCGA-BP-4346 TCGA-BP-4351 TCGA-BP-4352 TCGA-BP-4354 TCGA-BP-4761 TCGA-BP-4771 
       49.08        31.89        11.31        33.99         5.98         5.33 
TCGA-BP-4777 TCGA-BP-4781 TCGA-BP-4782 TCGA-BP-4787 TCGA-BP-4797 TCGA-BP-4798 
       56.91        68.38        11.64        15.78        36.39        10.98 
TCGA-BP-4799 TCGA-BP-4803 TCGA-BP-4959 TCGA-BP-4960 TCGA-BP-4962 TCGA-BP-4963 
       37.25         6.71        87.45        71.41        58.68        60.30 
TCGA-BP-4967 TCGA-BP-4968 TCGA-BP-4977 TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4986 
        6.74        57.40        14.93        46.45        31.30        25.81 
TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4994 TCGA-BP-4998 TCGA-BP-5000 TCGA-BP-5008 
       27.22         3.88        43.00        30.64        18.51        35.21 
TCGA-BP-5009 TCGA-BP-5169 TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5189 
       36.23         6.35        30.64        62.86        74.40        27.02 
TCGA-BP-5191 TCGA-CJ-4635 TCGA-CJ-4637 TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 
       31.79        46.55        73.22        14.17        65.69        54.61 
TCGA-CJ-4869 TCGA-CJ-4871 TCGA-CJ-4873 TCGA-CJ-4876 TCGA-CJ-4881 TCGA-CJ-4884 
       83.97        79.66        74.27        64.27        66.21        57.83 
TCGA-CJ-4887 TCGA-CJ-4888 TCGA-CJ-4891 TCGA-CJ-4895 TCGA-CJ-4900 TCGA-CJ-4901 
       30.64        51.52        26.93        39.45        56.35        47.67 
TCGA-CJ-4912 TCGA-CJ-4923 TCGA-CJ-5676 TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 
       54.48        18.81        84.66        25.71        18.87        22.32 
TCGA-CJ-5689 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 TCGA-CJ-6033 TCGA-CW-5580 
       53.26        60.99        53.42        75.58         7.36        64.57 
TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6087 TCGA-CW-6097 TCGA-CZ-4854 TCGA-CZ-4857 
       35.34        74.63         1.35        18.74        46.16        47.08 
TCGA-CZ-4858 TCGA-CZ-4861 TCGA-CZ-5452 TCGA-CZ-5456 TCGA-CZ-5461 TCGA-CZ-5464 
       63.88        14.66        58.82        56.28        10.85        57.21 
TCGA-CZ-5466 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5470 TCGA-CZ-5984 TCGA-CZ-5985 
       22.52         1.94        31.10        12.69        67.96        65.65 
TCGA-CZ-5987 TCGA-DV-5567 TCGA-G6-A5PC 
       14.30        48.33         7.96 

subtype1 subtype2 subtype3 
    0.07     0.23     0.23 
subtype1 subtype2 subtype3 
  112.80   120.59    93.99 
subtype1 subtype2 subtype3 
   45.07    37.12    33.50 
[1] "0.1 - 112.8 (45.1)" "0.2 - 120.6 (37.1)" "0.2 - 94.0 (33.5)" 
  [1] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [31] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [85] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[103] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[157] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[175] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[187] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[199] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[205] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[211] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[217] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[223] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[229] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[235] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[241] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[247] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[253] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[259] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[265] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[271] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[277] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[283] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[289] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[301] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[307] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[313] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[319] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[325] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[331] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[337] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[343] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[349] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[355] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[361] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[367] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[373] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[379] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[385] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[391] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[397] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[403] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[409] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[415] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[421] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[427] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[433] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[439] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[445] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[451] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[457] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[463] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[469] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[475] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[481] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
  [1] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [31] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [85] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[103] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[157] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[175] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[187] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[199] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[205] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[211] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[217] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[223] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[229] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[235] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[241] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[247] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[253] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[259] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[265] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[271] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[277] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[283] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[289] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[301] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[307] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[313] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[319] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[325] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[331] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[337] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[343] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[349] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[355] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[361] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[367] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[373] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[379] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[385] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[391] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[397] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[403] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[409] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[415] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[421] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[427] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[433] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[439] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[445] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[451] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[457] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[463] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[469] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[475] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[481] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
  [1] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [31] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [85] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[103] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[157] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[175] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[187] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[199] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[205] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[211] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[217] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[223] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[229] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[235] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[241] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[247] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[253] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[259] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[265] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[271] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[277] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[283] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[289] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[301] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[307] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[313] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[319] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[325] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[331] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[337] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[343] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[349] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[355] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[361] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[367] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[373] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[379] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[385] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[391] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[397] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[403] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[409] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[415] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[421] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[427] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[433] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[439] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[445] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[451] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[457] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[463] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[469] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[475] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[481] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
D9V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      61        9        29       10
  subtype2     113       21        45       27
  subtype3      56       23        50       42
D9V3, multiclass
          vv
clus        T1  T2  T3  T4
  subtype1  63   9  33   4
  subtype2 114  26  64   2
  subtype3  59  29  78   5
D9V4, multiclass
D9V5, binary
          cls
clus        0  1
  subtype1 54  3
  subtype2 87  2
  subtype3 82 13
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   54    3
  subtype2   87    2
  subtype3   82   13
   clus
vv  subtype1 subtype2 subtype3
  0       54       87       82
  1        3        2       13
          vv
clus        M0  M1  MX
  subtype1 100   9   0
  subtype2 177  27   2
  subtype3 128  42   1
D9V6, multiclass
D9V7, binary
          cls
clus         0   1
  subtype1  37  72
  subtype2  86 120
  subtype3  42 129
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   37   72
  subtype2   86  120
  subtype3   42  129
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       37       86       42
  MALE         72      120      129
D9V8, continuous
D9V9, continuous
[1] "Remove cluster labels:" "subtype2"              
clus
subtype2 subtype3 
       2        3 
[1] "subtype3" "subtype3" "subtype3"

Clustering(10) Variable = MIRSEQ_CHIERARCHICAL
D10V1, survival
          sevent
clus2        0   1
  subtype1  27  17
  subtype2 190  73
  subtype3 105  74
subtype1 subtype2 subtype3 
      44      263      179 
subtype1 subtype2 subtype3 
      17       73       74 
$subtype1
TCGA-A3-3313 TCGA-A3-3363 TCGA-A3-3374 TCGA-A3-3382 TCGA-AK-3427 TCGA-AK-3433 
       24.16        10.49        43.20        18.87        84.36        72.07 
TCGA-AK-3436 TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3447 TCGA-AK-3451 TCGA-AK-3453 
       67.20        57.37        46.78        40.01        48.69        45.93 
TCGA-AK-3465 TCGA-AS-3777 TCGA-B0-4699 TCGA-B0-4713 TCGA-B0-4834 TCGA-B0-4842 
       12.13        40.70         3.62         6.64        68.71        56.68 
TCGA-B0-5083 TCGA-B0-5117 TCGA-B0-5707 TCGA-B2-3923 TCGA-B2-4098 TCGA-B8-4619 
       34.36        17.59        92.98        32.61         1.68        17.19 
TCGA-BP-4163 TCGA-BP-4334 TCGA-BP-4761 TCGA-BP-4962 TCGA-BP-4994 TCGA-BP-5000 
       93.34        21.21         5.98        58.68        43.00        18.51 
TCGA-BP-5190 TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 TCGA-CJ-4869 TCGA-CJ-4888 
       33.24        14.17        65.69        54.61        83.97        51.52 
TCGA-CJ-4891 TCGA-CJ-4900 TCGA-CJ-5677 TCGA-CJ-5680 TCGA-CZ-4866 TCGA-CZ-5464 
       26.93        56.35        25.71        25.25        61.41        57.21 
TCGA-CZ-5469 TCGA-G6-A5PC 
       31.10         7.96 

$subtype2
TCGA-A3-3307 TCGA-A3-3311 TCGA-A3-3319 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3323 
       47.21        39.16        37.15        49.58        48.59        36.36 
TCGA-A3-3324 TCGA-A3-3326 TCGA-A3-3331 TCGA-A3-3346 TCGA-A3-3351 TCGA-A3-3357 
       38.99        37.38        48.82         4.50        29.92        88.37 
TCGA-A3-3358 TCGA-A3-3365 TCGA-A3-3367 TCGA-A3-3370 TCGA-A3-3372 TCGA-A3-3378 
       42.97        28.70        74.63        74.76        24.16        20.71 
TCGA-A3-3380 TCGA-A3-3383 TCGA-A3-3385 TCGA-AK-3428 TCGA-AK-3429 TCGA-AK-3430 
       18.64        28.31        65.52        73.08        66.31        15.78 
TCGA-AK-3434 TCGA-AK-3444 TCGA-AK-3450 TCGA-AK-3454 TCGA-AK-3455 TCGA-AK-3456 
       68.61        48.36        58.49        28.73        22.45        37.58 
TCGA-AK-3458 TCGA-AK-3460 TCGA-B0-4693 TCGA-B0-4696 TCGA-B0-4701 TCGA-B0-4706 
       38.40        31.27         2.53        28.47         7.82         0.85 
TCGA-B0-4710 TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4814 TCGA-B0-4817 TCGA-B0-4818 
        3.16         3.25        20.25         5.52        33.50        16.77 
TCGA-B0-4824 TCGA-B0-4828 TCGA-B0-4833 TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4841 
       54.48        10.09        78.44        27.42        53.88         6.71 
TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-4945 
       65.29        39.45        26.07         2.27        36.85        70.52 
TCGA-B0-5075 TCGA-B0-5077 TCGA-B0-5085 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5099 
       20.94        43.30        25.32        15.09        10.95        15.95 
TCGA-B0-5102 TCGA-B0-5104 TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5110 TCGA-B0-5113 
       90.87        90.48        52.54        30.48        35.90        11.80 
TCGA-B0-5115 TCGA-B0-5116 TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 
       26.20        21.60        18.21        21.44        14.76        79.17 
TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5697 
       48.89       101.13        15.78        46.68        56.78        60.33 
TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5701 TCGA-B0-5703 TCGA-B0-5705 
       84.92        90.12        35.57        56.94        39.55       120.59 
TCGA-B0-5706 TCGA-B0-5711 TCGA-B0-5712 TCGA-B0-5713 TCGA-B2-3924 TCGA-B2-4099 
       79.36        96.36        89.49        61.32        35.90        12.30 
TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5639 TCGA-B2-A4SR 
       21.30        31.30        11.77        10.36        13.71        16.67 
TCGA-B4-5377 TCGA-B4-5832 TCGA-B4-5834 TCGA-B4-5835 TCGA-B4-5836 TCGA-B4-5843 
        9.57         0.23         1.25         0.53         4.64         0.36 
TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 TCGA-B8-4153 TCGA-B8-4154 
        0.23        16.80        27.16        27.55        25.05        24.66 
TCGA-B8-4621 TCGA-B8-4622 TCGA-B8-5158 TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5165 
       25.91        23.01        20.91        23.74         0.85        24.23 
TCGA-B8-5546 TCGA-B8-5549 TCGA-B8-5553 TCGA-B8-A54J TCGA-BP-4158 TCGA-BP-4159 
       16.60         6.38        14.30         2.17       111.02        85.51 
TCGA-BP-4161 TCGA-BP-4162 TCGA-BP-4164 TCGA-BP-4165 TCGA-BP-4166 TCGA-BP-4174 
       90.28       101.06        32.61        99.85         0.43        61.78 
TCGA-BP-4325 TCGA-BP-4327 TCGA-BP-4329 TCGA-BP-4330 TCGA-BP-4331 TCGA-BP-4335 
       97.45         3.58        27.78        62.07        80.68        15.16 
TCGA-BP-4338 TCGA-BP-4340 TCGA-BP-4341 TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4351 
       93.99        18.48        52.24        49.08        44.94        31.89 
TCGA-BP-4756 TCGA-BP-4758 TCGA-BP-4759 TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4771 
       12.30        72.59        77.98        48.07        13.15         5.33 
TCGA-BP-4775 TCGA-BP-4776 TCGA-BP-4777 TCGA-BP-4781 TCGA-BP-4803 TCGA-BP-4961 
       60.59        13.51        56.91        68.38         6.71        63.62 
TCGA-BP-4963 TCGA-BP-4969 TCGA-BP-4973 TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 
       60.30        58.98        45.50         7.23        47.11        53.65 
TCGA-BP-4977 TCGA-BP-4981 TCGA-BP-4982 TCGA-BP-4987 TCGA-BP-4991 TCGA-BP-4992 
       14.93        36.07        33.34        36.95        46.45        16.47 
TCGA-BP-4993 TCGA-BP-4995 TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5007 TCGA-BP-5009 
        5.82        45.07        38.70        37.02        37.48        36.23 
TCGA-BP-5168 TCGA-BP-5173 TCGA-BP-5174 TCGA-BP-5175 TCGA-BP-5176 TCGA-BP-5178 
       48.10         1.78        74.20        30.64        52.27        62.86 
TCGA-BP-5180 TCGA-BP-5181 TCGA-BP-5183 TCGA-BP-5184 TCGA-BP-5185 TCGA-BP-5186 
       74.40        49.15        42.44        37.25        37.22        22.78 
TCGA-BP-5189 TCGA-BP-5191 TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5195 TCGA-BP-5201 
       27.02        31.79        23.47        13.41        24.62        31.27 
TCGA-BP-5202 TCGA-CJ-4634 TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4644 TCGA-CJ-4870 
        0.95        59.84        75.88        58.95        11.05        49.25 
TCGA-CJ-4873 TCGA-CJ-4875 TCGA-CJ-4876 TCGA-CJ-4878 TCGA-CJ-4884 TCGA-CJ-4885 
       74.27        77.36        64.27        71.87        57.83        69.86 
TCGA-CJ-4887 TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4897 TCGA-CJ-4899 TCGA-CJ-4903 
       30.64        24.66        27.65        59.44        50.24        51.29 
TCGA-CJ-4904 TCGA-CJ-4912 TCGA-CJ-4916 TCGA-CJ-5672 TCGA-CJ-5675 TCGA-CJ-5676 
       58.92        54.48        45.14        72.00        79.89        84.66 
TCGA-CJ-5678 TCGA-CJ-5681 TCGA-CJ-5682 TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-5686 
       18.87        18.15        61.91        62.10        73.35        67.00 
TCGA-CJ-6028 TCGA-CJ-6032 TCGA-CW-5580 TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5585 
       53.42        83.77        64.57        92.02         5.39        85.78 
TCGA-CW-5587 TCGA-CW-5589 TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6093 TCGA-CZ-4853 
       73.18        78.15        35.34        74.63       103.43        25.45 
TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4861 TCGA-CZ-4862 TCGA-CZ-4863 TCGA-CZ-4864 
        0.59        58.75        14.66        60.59        63.39        93.04 
TCGA-CZ-5451 TCGA-CZ-5452 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 TCGA-CZ-5457 
       63.42        58.82         0.82        23.74        18.44        55.33 
TCGA-CZ-5458 TCGA-CZ-5459 TCGA-CZ-5460 TCGA-CZ-5461 TCGA-CZ-5462 TCGA-CZ-5463 
       56.94        55.33        47.01        10.85        10.22        21.76 
TCGA-CZ-5465 TCGA-CZ-5466 TCGA-CZ-5467 TCGA-CZ-5468 TCGA-CZ-5470 TCGA-CZ-5982 
       47.54        22.52         2.40         1.94        12.69        80.19 
TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5986 TCGA-CZ-5987 TCGA-CZ-5989 TCGA-DV-5566 
       67.96        65.65        12.26        14.30        62.63        45.96 
TCGA-DV-5568 TCGA-DV-5569 TCGA-EU-5906 TCGA-EU-5907 TCGA-GK-A6C7 
       12.16        11.67         6.77         4.18         2.01 

$subtype3
TCGA-A3-3308 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3347 TCGA-A3-3349 TCGA-A3-3362 
        0.53        49.08        49.02        52.93        45.53        51.25 
TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3387 TCGA-AK-3425 TCGA-AK-3426 TCGA-AK-3431 
       53.29        35.18        20.28       109.91        29.10        60.92 
TCGA-AK-3445 TCGA-AK-3461 TCGA-B0-4688 TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 
       42.08        28.04         3.32         1.41         4.57         3.48 
TCGA-B0-4697 TCGA-B0-4698 TCGA-B0-4700 TCGA-B0-4703 TCGA-B0-4707 TCGA-B0-4712 
       19.00         1.38        65.10         5.98        19.73        43.96 
TCGA-B0-4810 TCGA-B0-4811 TCGA-B0-4813 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4819 
       15.72        46.59         0.59        52.21        45.07         6.02 
TCGA-B0-4821 TCGA-B0-4822 TCGA-B0-4823 TCGA-B0-4827 TCGA-B0-4836 TCGA-B0-4837 
       40.44        36.53        14.93        29.10        40.70        45.30 
TCGA-B0-4843 TCGA-B0-4844 TCGA-B0-4848 TCGA-B0-5080 TCGA-B0-5081 TCGA-B0-5084 
       11.64        10.29        29.03        11.24        11.90         7.30 
TCGA-B0-5088 TCGA-B0-5095 TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5098 TCGA-B0-5100 
       18.51         8.05         2.24        21.86        52.08        62.89 
TCGA-B0-5108 TCGA-B0-5109 TCGA-B0-5119 TCGA-B0-5120 TCGA-B0-5400 TCGA-B0-5691 
       29.95        19.30         1.94        16.21        37.22       112.80 
TCGA-B0-5702 TCGA-B0-5709 TCGA-B0-5710 TCGA-B0-5812 TCGA-B2-5636 TCGA-B2-5641 
       52.77       102.48        47.97        97.41        30.21        21.57 
TCGA-B4-5378 TCGA-B4-5838 TCGA-B8-4143 TCGA-B8-4620 TCGA-B8-5162 TCGA-B8-5163 
        5.75         5.46        23.31        25.55         1.18        27.02 
TCGA-B8-5545 TCGA-B8-5550 TCGA-B8-5551 TCGA-B8-5552 TCGA-B8-A54I TCGA-BP-4160 
       17.16        14.27         0.49        12.89         4.93        94.72 
TCGA-BP-4167 TCGA-BP-4169 TCGA-BP-4173 TCGA-BP-4176 TCGA-BP-4177 TCGA-BP-4326 
       89.36        23.05        62.24        64.27        54.90        53.42 
TCGA-BP-4332 TCGA-BP-4337 TCGA-BP-4342 TCGA-BP-4343 TCGA-BP-4344 TCGA-BP-4345 
       37.25         0.07        74.17        62.86        54.77        49.84 
TCGA-BP-4352 TCGA-BP-4353 TCGA-BP-4354 TCGA-BP-4355 TCGA-BP-4760 TCGA-BP-4762 
       11.31        12.33        33.99        31.33        77.62        44.15 
TCGA-BP-4763 TCGA-BP-4765 TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4782 TCGA-BP-4787 
       41.75        71.80        61.68        10.82        11.64        15.78 
TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4799 
       48.95        36.53        20.38        36.39        10.98        37.25 
TCGA-BP-4801 TCGA-BP-4804 TCGA-BP-4807 TCGA-BP-4959 TCGA-BP-4960 TCGA-BP-4965 
       36.95        47.97         6.94        87.45        71.41        61.51 
TCGA-BP-4967 TCGA-BP-4968 TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4972 TCGA-BP-4983 
        6.74        57.40        14.24        48.89        49.38        46.45 
TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4998 TCGA-BP-5008 
       31.30        25.81        27.22         3.88        30.64        35.21 
TCGA-BP-5010 TCGA-BP-5169 TCGA-BP-5170 TCGA-BP-5177 TCGA-BP-5182 TCGA-BP-5187 
       28.87         6.35        79.30         9.63        38.30        13.35 
TCGA-BP-5196 TCGA-BP-5198 TCGA-BP-5199 TCGA-BP-5200 TCGA-CJ-4635 TCGA-CJ-4636 
       33.47        19.82        44.55        34.95        46.55        63.25 
TCGA-CJ-4637 TCGA-CJ-4642 TCGA-CJ-4871 TCGA-CJ-4872 TCGA-CJ-4881 TCGA-CJ-4882 
       73.22        53.52        79.66        47.18        66.21        61.91 
TCGA-CJ-4886 TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4892 TCGA-CJ-4895 TCGA-CJ-4901 
       64.18        63.98        68.55        50.01        39.45        47.67 
TCGA-CJ-4902 TCGA-CJ-4905 TCGA-CJ-4907 TCGA-CJ-4908 TCGA-CJ-4918 TCGA-CJ-4920 
       49.97        49.18        49.28        50.33         3.06         4.57 
TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5679 TCGA-CJ-5689 TCGA-CJ-6027 TCGA-CJ-6030 
       18.81        63.88        22.32        53.26        60.99        75.58 
TCGA-CJ-6031 TCGA-CJ-6033 TCGA-CW-5583 TCGA-CW-5588 TCGA-CW-6087 TCGA-CW-6088 
       62.66         7.36        81.83        66.28         1.35       105.93 
TCGA-CW-6090 TCGA-CW-6097 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4860 
       83.90        18.74        46.16        47.08        63.88         6.77 
TCGA-CZ-4865 TCGA-CZ-5456 TCGA-CZ-5988 TCGA-DV-5565 TCGA-DV-5567 TCGA-DV-5573 
        5.46        56.28        22.78        43.69        48.33        37.15 
TCGA-DV-5574 TCGA-DV-5575 TCGA-DV-5576 TCGA-EU-5904 TCGA-EU-5905 
       23.77        56.84        23.90        18.12         3.91 

subtype1 subtype2 subtype3 
    1.68     0.23     0.07 
subtype1 subtype2 subtype3 
   93.34   120.59   112.80 
subtype1 subtype2 subtype3 
  40.355   37.020   36.950 
[1] "1.7 - 93.3 (40.4)"  "0.2 - 120.6 (37.0)" "0.1 - 112.8 (37.0)"
  [1] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [37] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[187] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[199] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[211] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[235] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[241] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[247] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[253] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[259] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[271] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[277] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[283] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[289] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[301] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[307] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[313] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[319] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[331] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[337] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[343] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[349] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[355] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[361] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[373] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[379] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[385] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[391] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[397] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[403] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[409] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[415] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[421] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[427] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[433] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[439] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[445] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[451] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[457] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[469] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[475] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[481] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
  [1] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [37] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[187] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[199] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[211] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[235] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[241] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[247] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[253] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[259] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[271] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[277] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[283] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[289] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[301] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[307] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[313] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[319] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[331] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[337] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[343] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[349] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[355] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[361] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[373] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[379] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[385] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[391] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[397] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[403] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[409] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[415] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[421] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[427] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[433] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[439] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[445] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[451] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[457] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[469] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[475] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[481] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
  [1] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [37] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[187] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[199] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[211] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[235] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[241] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[247] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[253] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[259] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[271] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[277] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[283] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[289] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[301] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[307] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[313] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[319] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[331] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[337] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[343] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[349] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[355] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[361] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[373] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[379] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[385] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[391] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[397] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[403] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[409] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[415] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[421] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[427] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[433] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[439] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[445] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[451] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[457] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[469] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[475] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[481] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
D10V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      17        9         8       10
  subtype2     131       29        62       41
  subtype3      82       15        54       28
D10V3, multiclass
          vv
clus        T1  T2  T3  T4
  subtype1  18  11  13   2
  subtype2 134  36  91   2
  subtype3  84  17  71   7
D10V4, multiclass
D10V5, binary
          cls
clus         0   1
  subtype1  20   4
  subtype2 122   4
  subtype3  81  10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   20    4
  subtype2  122    4
  subtype3   81   10
   clus
vv  subtype1 subtype2 subtype3
  0       20      122       81
  1        4        4       10
          vv
clus        M0  M1  MX
  subtype1  34  10   0
  subtype2 220  41   2
  subtype3 151  27   1
D10V6, multiclass
D10V7, binary
          cls
clus         0   1
  subtype1  17  27
  subtype2  94 169
  subtype3  54 125
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17   27
  subtype2   94  169
  subtype3   54  125
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       17       94       54
  MALE         27      169      125
D10V8, continuous
[1] "Remove cluster labels:" "subtype1"              
clus
subtype1 subtype2 subtype3 
       1       20       15 
 [1] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[13] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
D10V9, continuous
[1] "Remove cluster labels:" "subtype1"              
clus
subtype1 subtype2 
       1        4 
[1] "subtype2" "subtype2" "subtype2" "subtype2"

Clustering(11) Variable = MIRSEQ_MATURE_CNMF
D11V1, survival
          sevent
clus2       0  1
  subtype1 34 11
  subtype2 78 18
  subtype3 43 40
subtype1 subtype2 subtype3 
      45       96       83 
subtype1 subtype2 subtype3 
      11       18       40 
$subtype1
TCGA-A3-3317 TCGA-A3-3387 TCGA-AK-3465 TCGA-B0-4700 TCGA-B0-4811 TCGA-B0-5080 
       49.02        20.28        12.13        65.10        46.59        11.24 
TCGA-B0-5088 TCGA-B0-5691 TCGA-B0-5702 TCGA-B0-5709 TCGA-B0-5812 TCGA-B2-5636 
       18.51       112.80        52.77       102.48        97.41        30.21 
TCGA-B4-5838 TCGA-B8-5545 TCGA-B8-5550 TCGA-B8-5552 TCGA-BP-4173 TCGA-BP-4331 
        5.46        17.16        14.27        12.89        62.24        80.68 
TCGA-BP-4770 TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4804 TCGA-BP-4807 TCGA-BP-4970 
       10.82        48.95        36.53        47.97         6.94        14.24 
TCGA-BP-4982 TCGA-BP-4998 TCGA-BP-5008 TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-5671 
       33.34        30.64        35.21        63.98        68.55        63.88 
TCGA-CJ-5680 TCGA-CJ-5682 TCGA-CJ-6031 TCGA-CW-5583 TCGA-CW-5588 TCGA-CW-6088 
       25.25        61.91        62.66        81.83        66.28       105.93 
TCGA-CW-6090 TCGA-CZ-4860 TCGA-CZ-4865 TCGA-CZ-5988 TCGA-DV-5573 TCGA-DV-5574 
       83.90         6.77         5.46        22.78        37.15        23.77 
TCGA-DV-5575 TCGA-DV-5576 TCGA-EU-5905 
       56.84        23.90         3.91 

$subtype2
TCGA-A3-3358 TCGA-B0-4706 TCGA-B0-4710 TCGA-B0-4816 TCGA-B0-4818 TCGA-B0-4833 
       42.97         0.85         3.16        45.07        16.77        78.44 
TCGA-B0-4852 TCGA-B0-5085 TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5692 
       36.85        25.32        21.44        14.76        79.17        48.89 
TCGA-B0-5693 TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5698 TCGA-B0-5699 
      101.13        15.78        46.68        56.78        84.92        90.12 
TCGA-B0-5700 TCGA-B0-5703 TCGA-B0-5705 TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5712 
       35.57        39.55       120.59        47.97        96.36        89.49 
TCGA-B0-5713 TCGA-B2-3924 TCGA-B2-5639 TCGA-B2-A4SR TCGA-B4-5377 TCGA-B4-5378 
       61.32        35.90        13.71        16.67         9.57         5.75 
TCGA-B4-5834 TCGA-B4-5836 TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4153 
        1.25         4.64         0.36         0.23        16.80        25.05 
TCGA-B8-5546 TCGA-B8-5549 TCGA-B8-5553 TCGA-B8-A54J TCGA-BP-4340 TCGA-BP-4759 
       16.60         6.38        14.30         2.17        18.48        77.98 
TCGA-BP-4961 TCGA-BP-4965 TCGA-BP-4968 TCGA-BP-4969 TCGA-BP-4973 TCGA-BP-4974 
       63.62        61.51        57.40        58.98        45.50         7.23 
TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4981 TCGA-BP-4987 TCGA-BP-4992 TCGA-BP-4995 
       47.11        53.65        36.07        36.95        16.47        45.07 
TCGA-BP-5001 TCGA-BP-5007 TCGA-CJ-4870 TCGA-CJ-4875 TCGA-CJ-4878 TCGA-CJ-4899 
       38.70        37.48        49.25        77.36        71.87        50.24 
TCGA-CJ-5675 TCGA-CJ-5678 TCGA-CJ-5681 TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-5686 
       79.89        18.87        18.15        62.10        73.35        67.00 
TCGA-CJ-6032 TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-5589 
       83.77        92.02         5.39        85.78        73.18        78.15 
TCGA-CW-6093 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-4866 TCGA-CZ-5451 TCGA-CZ-5453 
      103.43        63.39        93.04        61.41        63.42         0.82 
TCGA-CZ-5454 TCGA-CZ-5455 TCGA-CZ-5457 TCGA-CZ-5458 TCGA-CZ-5459 TCGA-CZ-5460 
       23.74        18.44        55.33        56.94        55.33        47.01 
TCGA-CZ-5463 TCGA-CZ-5465 TCGA-CZ-5467 TCGA-CZ-5982 TCGA-CZ-5986 TCGA-CZ-5989 
       21.76        47.54         2.40        80.19        12.26        62.63 
TCGA-DV-5565 TCGA-DV-5566 TCGA-DV-5569 TCGA-EU-5904 TCGA-EU-5906 TCGA-GK-A6C7 
       43.69        45.96        11.67        18.12         6.77         2.01 

$subtype3
TCGA-AK-3440 TCGA-AK-3458 TCGA-B0-4698 TCGA-B0-4712 TCGA-B0-4810 TCGA-B0-4815 
       57.37        38.40         1.38        43.96        15.72        52.21 
TCGA-B0-4821 TCGA-B0-4834 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-5075 TCGA-B0-5084 
       40.44        68.71        40.70        45.30        20.94         7.30 
TCGA-B0-5400 TCGA-B0-5697 TCGA-B0-5701 TCGA-B0-5706 TCGA-B0-5707 TCGA-B2-3923 
       37.22        60.33        56.94        79.36        92.98        32.61 
TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5641 TCGA-B4-5832 TCGA-B4-5835 TCGA-B8-4621 
       11.77        10.36        21.57         0.23         0.53        25.91 
TCGA-B8-5551 TCGA-B8-A54I TCGA-BP-4761 TCGA-BP-4771 TCGA-BP-4787 TCGA-BP-4797 
        0.49         4.93         5.98         5.33        15.78        36.39 
TCGA-BP-4959 TCGA-BP-4960 TCGA-BP-4967 TCGA-BP-4971 TCGA-BP-4977 TCGA-BP-4985 
       87.45        71.41         6.74        48.89        14.93        31.30 
TCGA-BP-4986 TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4994 TCGA-BP-5000 TCGA-BP-5009 
       25.81        27.22         3.88        43.00        18.51        36.23 
TCGA-CJ-4635 TCGA-CJ-4876 TCGA-CJ-4881 TCGA-CJ-4887 TCGA-CJ-4888 TCGA-CJ-4891 
       46.55        64.27        66.21        30.64        51.52        26.93 
TCGA-CJ-4895 TCGA-CJ-4900 TCGA-CJ-5672 TCGA-CJ-5676 TCGA-CJ-5677 TCGA-CJ-5679 
       39.45        56.35        72.00        84.66        25.71        22.32 
TCGA-CJ-5689 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 TCGA-CJ-6033 TCGA-CW-5580 
       53.26        60.99        53.42        75.58         7.36        64.57 
TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6087 TCGA-CW-6097 TCGA-CZ-4854 TCGA-CZ-4857 
       35.34        74.63         1.35        18.74        46.16        47.08 
TCGA-CZ-4858 TCGA-CZ-5452 TCGA-CZ-5456 TCGA-CZ-5461 TCGA-CZ-5462 TCGA-CZ-5464 
       63.88        58.82        56.28        10.85        10.22        57.21 
TCGA-CZ-5466 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5470 TCGA-CZ-5984 TCGA-CZ-5985 
       22.52         1.94        31.10        12.69        67.96        65.65 
TCGA-CZ-5987 TCGA-DV-5567 TCGA-DV-5568 TCGA-EU-5907 TCGA-G6-A5PC 
       14.30        48.33        12.16         4.18         7.96 

subtype1 subtype2 subtype3 
    3.91     0.23     0.23 
subtype1 subtype2 subtype3 
  112.80   120.59    92.98 
subtype1 subtype2 subtype3 
   36.53    45.07    36.23 
[1] "3.9 - 112.8 (36.5)" "0.2 - 120.6 (45.1)" "0.2 - 93.0 (36.2)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [67] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [79] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [85] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [91] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[103] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[121] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[127] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[163] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[169] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[205] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[211] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[217] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[223] "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [67] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [79] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [85] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [91] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[103] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[121] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[127] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[163] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[169] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[205] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[211] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[217] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[223] "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [67] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [79] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [85] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [91] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[103] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[121] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[127] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[163] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[169] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[205] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[211] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[217] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[223] "subtype3" "subtype2"
D11V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      31        2         5        7
  subtype2      48       14        22       12
  subtype3      29       10        20       24
D11V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 32  2  8  3
  subtype2 48 17 30  1
  subtype3 32 10 39  2
D11V4, multiclass
D11V5, binary
          cls
clus        0  1
  subtype1 15  2
  subtype2 43  1
  subtype3 39  5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15    2
  subtype2   43    1
  subtype3   39    5
   clus
vv  subtype1 subtype2 subtype3
  0       15       43       39
  1        2        1        5
          vv
clus       M0 M1 MX
  subtype1 39  6  0
  subtype2 83 11  2
  subtype3 59 23  1
D11V6, multiclass
D11V7, binary
          cls
clus        0  1
  subtype1 13 32
  subtype2 39 57
  subtype3 15 68
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13   32
  subtype2   39   57
  subtype3   15   68
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       13       39       15
  MALE         32       57       68
D11V8, continuous
D11V9, continuous
[1] "Remove cluster labels:" "subtype2"               "subtype3"              
clus
subtype2 subtype3 
       1        2 
character(0)

Clustering(12) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D12V1, survival
          sevent
clus2       0  1
  subtype1  7  3
  subtype2 32 17
  subtype3 46 31
  subtype4  7  3
  subtype5 63 15
subtype1 subtype2 subtype3 subtype4 subtype5 
      10       49       77       10       78 
subtype1 subtype2 subtype3 subtype4 subtype5 
       3       17       31        3       15 
$subtype1
TCGA-AK-3440 TCGA-AK-3465 TCGA-B0-4834 TCGA-B2-3923 TCGA-B2-5636 TCGA-B4-5378 
       57.37        12.13        68.71        32.61        30.21         5.75 
TCGA-BP-4994 TCGA-CJ-6033 TCGA-DV-5567 TCGA-DV-5576 
       43.00         7.36        48.33        23.90 

$subtype2
TCGA-A3-3317 TCGA-A3-3387 TCGA-B0-4698 TCGA-B0-4700 TCGA-B0-4810 TCGA-B0-4816 
       49.02        20.28         1.38        65.10        15.72        45.07 
TCGA-B0-4821 TCGA-B0-5080 TCGA-B0-5084 TCGA-B0-5400 TCGA-B0-5691 TCGA-B0-5702 
       40.44        11.24         7.30        37.22       112.80        52.77 
TCGA-B0-5709 TCGA-B4-5838 TCGA-B8-5545 TCGA-B8-5550 TCGA-B8-5551 TCGA-B8-5552 
      102.48         5.46        17.16        14.27         0.49        12.89 
TCGA-B8-A54I TCGA-BP-4173 TCGA-BP-4770 TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4804 
        4.93        62.24        10.82        48.95        36.53        47.97 
TCGA-BP-4960 TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4985 TCGA-BP-4988 TCGA-BP-4989 
       71.41        14.24        48.89        31.30        27.22         3.88 
TCGA-BP-4998 TCGA-BP-5008 TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-5671 TCGA-CJ-5689 
       30.64        35.21        63.98        68.55        63.88        53.26 
TCGA-CJ-6031 TCGA-CW-5588 TCGA-CW-6087 TCGA-CW-6088 TCGA-CW-6097 TCGA-CZ-4858 
       62.66        66.28         1.35       105.93        18.74        63.88 
TCGA-CZ-4860 TCGA-CZ-4865 TCGA-CZ-5456 TCGA-CZ-5464 TCGA-CZ-5988 TCGA-DV-5574 
        6.77         5.46        56.28        57.21        22.78        23.77 
TCGA-EU-5905 
        3.91 

$subtype3
TCGA-A3-3358 TCGA-AK-3458 TCGA-B0-4712 TCGA-B0-4815 TCGA-B0-4836 TCGA-B0-4837 
       42.97        38.40        43.96        52.21        40.70        45.30 
TCGA-B0-4852 TCGA-B0-5075 TCGA-B0-5402 TCGA-B0-5692 TCGA-B0-5696 TCGA-B0-5697 
       36.85        20.94        14.76        48.89        56.78        60.33 
TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5701 TCGA-B0-5703 TCGA-B0-5706 TCGA-B0-5707 
       84.92        90.12        56.94        39.55        79.36        92.98 
TCGA-B2-5639 TCGA-B2-5641 TCGA-B4-5832 TCGA-B4-5835 TCGA-B4-5836 TCGA-B4-5843 
       13.71        21.57         0.23         0.53         4.64         0.36 
TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4621 TCGA-B8-5546 TCGA-BP-4761 TCGA-BP-4771 
        0.23        16.80        25.91        16.60         5.98         5.33 
TCGA-BP-4787 TCGA-BP-4973 TCGA-BP-4986 TCGA-BP-5000 TCGA-BP-5009 TCGA-CJ-4635 
       15.78        45.50        25.81        18.51        36.23        46.55 
TCGA-CJ-4876 TCGA-CJ-4881 TCGA-CJ-4887 TCGA-CJ-4888 TCGA-CJ-4891 TCGA-CJ-4895 
       64.27        66.21        30.64        51.52        26.93        39.45 
TCGA-CJ-5675 TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5680 TCGA-CJ-5681 
       79.89        25.71        18.87        22.32        25.25        18.15 
TCGA-CJ-5686 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 TCGA-CW-5580 TCGA-CW-5581 
       67.00        60.99        53.42        75.58        64.57        92.02 
TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6090 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4866 
       35.34        74.63        83.90        46.16        47.08        61.41 
TCGA-CZ-5452 TCGA-CZ-5454 TCGA-CZ-5455 TCGA-CZ-5458 TCGA-CZ-5462 TCGA-CZ-5466 
       58.82        23.74        18.44        56.94        10.22        22.52 
TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5470 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5986 
        1.94        31.10        12.69        67.96        65.65        12.26 
TCGA-CZ-5987 TCGA-CZ-5989 TCGA-DV-5568 TCGA-DV-5573 TCGA-EU-5907 
       14.30        62.63        12.16        37.15         4.18 

$subtype4
TCGA-B0-5088 TCGA-BP-4807 TCGA-BP-4959 TCGA-BP-4967 TCGA-BP-4968 TCGA-BP-4974 
       18.51         6.94        87.45         6.74        57.40         7.23 
TCGA-BP-4977 TCGA-CJ-5672 TCGA-CW-5589 TCGA-CZ-5459 
       14.93        72.00        78.15        55.33 

$subtype5
TCGA-B0-4706 TCGA-B0-4710 TCGA-B0-4811 TCGA-B0-4818 TCGA-B0-4833 TCGA-B0-5085 
        0.85         3.16        46.59        16.77        78.44        25.32 
TCGA-B0-5399 TCGA-B0-5690 TCGA-B0-5693 TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5700 
       21.44        79.17       101.13        15.78        46.68        35.57 
TCGA-B0-5705 TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5712 TCGA-B0-5713 TCGA-B0-5812 
      120.59        47.97        96.36        89.49        61.32        97.41 
TCGA-B2-3924 TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-A4SR TCGA-B4-5377 TCGA-B4-5834 
       35.90        11.77        10.36        16.67         9.57         1.25 
TCGA-B8-4153 TCGA-B8-5549 TCGA-B8-5553 TCGA-B8-A54J TCGA-BP-4331 TCGA-BP-4340 
       25.05         6.38        14.30         2.17        80.68        18.48 
TCGA-BP-4759 TCGA-BP-4797 TCGA-BP-4961 TCGA-BP-4965 TCGA-BP-4969 TCGA-BP-4975 
       77.98        36.39        63.62        61.51        58.98        47.11 
TCGA-BP-4976 TCGA-BP-4981 TCGA-BP-4982 TCGA-BP-4987 TCGA-BP-4992 TCGA-BP-4995 
       53.65        36.07        33.34        36.95        16.47        45.07 
TCGA-BP-5001 TCGA-BP-5007 TCGA-CJ-4870 TCGA-CJ-4875 TCGA-CJ-4878 TCGA-CJ-4899 
       38.70        37.48        49.25        77.36        71.87        50.24 
TCGA-CJ-4900 TCGA-CJ-5676 TCGA-CJ-5682 TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-6032 
       56.35        84.66        61.91        62.10        73.35        83.77 
TCGA-CW-5583 TCGA-CW-5584 TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-6093 TCGA-CZ-4863 
       81.83         5.39        85.78        73.18       103.43        63.39 
TCGA-CZ-4864 TCGA-CZ-5451 TCGA-CZ-5453 TCGA-CZ-5457 TCGA-CZ-5460 TCGA-CZ-5461 
       93.04        63.42         0.82        55.33        47.01        10.85 
TCGA-CZ-5463 TCGA-CZ-5465 TCGA-CZ-5467 TCGA-CZ-5982 TCGA-DV-5565 TCGA-DV-5566 
       21.76        47.54         2.40        80.19        43.69        45.96 
TCGA-DV-5569 TCGA-DV-5575 TCGA-EU-5904 TCGA-EU-5906 TCGA-G6-A5PC TCGA-GK-A6C7 
       11.67        56.84        18.12         6.77         7.96         2.01 

subtype1 subtype2 subtype3 subtype4 subtype5 
    5.75     0.49     0.23     6.74     0.82 
subtype1 subtype2 subtype3 subtype4 subtype5 
   68.71   112.80    92.98    87.45   120.59 
subtype1 subtype2 subtype3 subtype4 subtype5 
  31.410   35.210   37.150   36.920   46.635 
[1] "5.8 - 68.7 (31.4)"  "0.5 - 112.8 (35.2)" "0.2 - 93.0 (37.1)" 
[4] "6.7 - 87.5 (36.9)"  "0.8 - 120.6 (46.6)"
  [1] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
  [7] "subtype2" "subtype2" "subtype5" "subtype5" "subtype3" "subtype2"
 [13] "subtype5" "subtype3" "subtype2" "subtype5" "subtype2" "subtype5"
 [19] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [25] "subtype2" "subtype5" "subtype4" "subtype5" "subtype2" "subtype3"
 [31] "subtype5" "subtype2" "subtype3" "subtype5" "subtype5" "subtype5"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype5" "subtype3"
 [43] "subtype2" "subtype3" "subtype5" "subtype3" "subtype3" "subtype2"
 [49] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype1"
 [55] "subtype5" "subtype5" "subtype5" "subtype1" "subtype3" "subtype3"
 [61] "subtype5" "subtype5" "subtype1" "subtype3" "subtype5" "subtype3"
 [67] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype5"
 [73] "subtype3" "subtype2" "subtype3" "subtype5" "subtype2" "subtype2"
 [79] "subtype2" "subtype5" "subtype2" "subtype5" "subtype2" "subtype5"
 [85] "subtype5" "subtype5" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype5" "subtype2" "subtype4" "subtype4"
 [97] "subtype2" "subtype5" "subtype5" "subtype4" "subtype4" "subtype5"
[103] "subtype2" "subtype2" "subtype3" "subtype4" "subtype5" "subtype5"
[109] "subtype4" "subtype5" "subtype5" "subtype2" "subtype3" "subtype5"
[115] "subtype2" "subtype2" "subtype5" "subtype1" "subtype5" "subtype2"
[121] "subtype3" "subtype5" "subtype5" "subtype2" "subtype3" "subtype3"
[127] "subtype5" "subtype5" "subtype3" "subtype5" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype5"
[139] "subtype5" "subtype2" "subtype4" "subtype3" "subtype5" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype5" "subtype5"
[151] "subtype5" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[157] "subtype2" "subtype5" "subtype1" "subtype3" "subtype3" "subtype5"
[163] "subtype5" "subtype5" "subtype5" "subtype2" "subtype4" "subtype3"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype5" "subtype2"
[175] "subtype3" "subtype3" "subtype2" "subtype2" "subtype5" "subtype5"
[181] "subtype2" "subtype3" "subtype5" "subtype3" "subtype5" "subtype3"
[187] "subtype3" "subtype2" "subtype5" "subtype3" "subtype4" "subtype5"
[193] "subtype5" "subtype3" "subtype5" "subtype2" "subtype5" "subtype3"
[199] "subtype5" "subtype3" "subtype3" "subtype3" "subtype5" "subtype3"
[205] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype5"
[211] "subtype5" "subtype1" "subtype3" "subtype5" "subtype3" "subtype2"
[217] "subtype5" "subtype1" "subtype5" "subtype2" "subtype5" "subtype3"
[223] "subtype5" "subtype5"
  [1] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
  [7] "subtype2" "subtype2" "subtype5" "subtype5" "subtype3" "subtype2"
 [13] "subtype5" "subtype3" "subtype2" "subtype5" "subtype2" "subtype5"
 [19] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [25] "subtype2" "subtype5" "subtype4" "subtype5" "subtype2" "subtype3"
 [31] "subtype5" "subtype2" "subtype3" "subtype5" "subtype5" "subtype5"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype5" "subtype3"
 [43] "subtype2" "subtype3" "subtype5" "subtype3" "subtype3" "subtype2"
 [49] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype1"
 [55] "subtype5" "subtype5" "subtype5" "subtype1" "subtype3" "subtype3"
 [61] "subtype5" "subtype5" "subtype1" "subtype3" "subtype5" "subtype3"
 [67] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype5"
 [73] "subtype3" "subtype2" "subtype3" "subtype5" "subtype2" "subtype2"
 [79] "subtype2" "subtype5" "subtype2" "subtype5" "subtype2" "subtype5"
 [85] "subtype5" "subtype5" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype5" "subtype2" "subtype4" "subtype4"
 [97] "subtype2" "subtype5" "subtype5" "subtype4" "subtype4" "subtype5"
[103] "subtype2" "subtype2" "subtype3" "subtype4" "subtype5" "subtype5"
[109] "subtype4" "subtype5" "subtype5" "subtype2" "subtype3" "subtype5"
[115] "subtype2" "subtype2" "subtype5" "subtype1" "subtype5" "subtype2"
[121] "subtype3" "subtype5" "subtype5" "subtype2" "subtype3" "subtype3"
[127] "subtype5" "subtype5" "subtype3" "subtype5" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype5"
[139] "subtype5" "subtype2" "subtype4" "subtype3" "subtype5" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype5" "subtype5"
[151] "subtype5" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[157] "subtype2" "subtype5" "subtype1" "subtype3" "subtype3" "subtype5"
[163] "subtype5" "subtype5" "subtype5" "subtype2" "subtype4" "subtype3"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype5" "subtype2"
[175] "subtype3" "subtype3" "subtype2" "subtype2" "subtype5" "subtype5"
[181] "subtype2" "subtype3" "subtype5" "subtype3" "subtype5" "subtype3"
[187] "subtype3" "subtype2" "subtype5" "subtype3" "subtype4" "subtype5"
[193] "subtype5" "subtype3" "subtype5" "subtype2" "subtype5" "subtype3"
[199] "subtype5" "subtype3" "subtype3" "subtype3" "subtype5" "subtype3"
[205] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype5"
[211] "subtype5" "subtype1" "subtype3" "subtype5" "subtype3" "subtype2"
[217] "subtype5" "subtype1" "subtype5" "subtype2" "subtype5" "subtype3"
[223] "subtype5" "subtype5"
  [1] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
  [7] "subtype2" "subtype2" "subtype5" "subtype5" "subtype3" "subtype2"
 [13] "subtype5" "subtype3" "subtype2" "subtype5" "subtype2" "subtype5"
 [19] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [25] "subtype2" "subtype5" "subtype4" "subtype5" "subtype2" "subtype3"
 [31] "subtype5" "subtype2" "subtype3" "subtype5" "subtype5" "subtype5"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype5" "subtype3"
 [43] "subtype2" "subtype3" "subtype5" "subtype3" "subtype3" "subtype2"
 [49] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype1"
 [55] "subtype5" "subtype5" "subtype5" "subtype1" "subtype3" "subtype3"
 [61] "subtype5" "subtype5" "subtype1" "subtype3" "subtype5" "subtype3"
 [67] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype5"
 [73] "subtype3" "subtype2" "subtype3" "subtype5" "subtype2" "subtype2"
 [79] "subtype2" "subtype5" "subtype2" "subtype5" "subtype2" "subtype5"
 [85] "subtype5" "subtype5" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype5" "subtype2" "subtype4" "subtype4"
 [97] "subtype2" "subtype5" "subtype5" "subtype4" "subtype4" "subtype5"
[103] "subtype2" "subtype2" "subtype3" "subtype4" "subtype5" "subtype5"
[109] "subtype4" "subtype5" "subtype5" "subtype2" "subtype3" "subtype5"
[115] "subtype2" "subtype2" "subtype5" "subtype1" "subtype5" "subtype2"
[121] "subtype3" "subtype5" "subtype5" "subtype2" "subtype3" "subtype3"
[127] "subtype5" "subtype5" "subtype3" "subtype5" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype5"
[139] "subtype5" "subtype2" "subtype4" "subtype3" "subtype5" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype5" "subtype5"
[151] "subtype5" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[157] "subtype2" "subtype5" "subtype1" "subtype3" "subtype3" "subtype5"
[163] "subtype5" "subtype5" "subtype5" "subtype2" "subtype4" "subtype3"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype5" "subtype2"
[175] "subtype3" "subtype3" "subtype2" "subtype2" "subtype5" "subtype5"
[181] "subtype2" "subtype3" "subtype5" "subtype3" "subtype5" "subtype3"
[187] "subtype3" "subtype2" "subtype5" "subtype3" "subtype4" "subtype5"
[193] "subtype5" "subtype3" "subtype5" "subtype2" "subtype5" "subtype3"
[199] "subtype5" "subtype3" "subtype3" "subtype3" "subtype5" "subtype3"
[205] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype5"
[211] "subtype5" "subtype1" "subtype3" "subtype5" "subtype3" "subtype2"
[217] "subtype5" "subtype1" "subtype5" "subtype2" "subtype5" "subtype3"
[223] "subtype5" "subtype5"
D12V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1       8        1         0        1
  subtype2      23        6        11        9
  subtype3      30       10        14       23
  subtype4       7        0         2        1
  subtype5      40        9        20        9
D12V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  8  1  1  0
  subtype2 24  6 15  4
  subtype3 31 12 33  1
  subtype4  7  0  3  0
  subtype5 42 10 25  1
D12V4, multiclass
D12V5, binary
          cls
clus        0  1
  subtype1  3  0
  subtype2 22  5
  subtype3 39  1
  subtype4  4  0
  subtype5 29  2
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3    0
  subtype2   22    5
  subtype3   39    1
  subtype4    4    0
  subtype5   29    2
          vv
clus       M0 M1 MX
  subtype1  9  1  0
  subtype2 41  7  1
  subtype3 55 22  0
  subtype4  9  1  0
  subtype5 67  9  2
D12V6, multiclass
D12V7, binary
          cls
clus        0  1
  subtype1  4  6
  subtype2 11 38
  subtype3 19 58
  subtype4  0 10
  subtype5 33 45
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4    6
  subtype2   11   38
  subtype3   19   58
  subtype4    0   10
  subtype5   33   45
D12V8, continuous
D12V9, continuous
[1] "Remove cluster labels:" "subtype3"               "subtype5"              
clus
subtype3 subtype5 
       1        2 
character(0)
> q(save="no")
