
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRC-TP/8225189/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRC-TP/8312253/KIRC-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=KIRC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=KIRC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRC-TP/8312253/KIRC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRC-TP/8225189/transformed.cor.cli.txt"

nPatients in clinical file=523, in cluster file=417, common to both=417
[1]   9 417
[1] "BAP1 MUTATION ANALYSIS"
[1] 3
  BAP1 MUTATED BAP1 WILD-TYPE 
            42            375 
  BAP1 MUTATED BAP1 WILD-TYPE 
            42            375 
[1] "VHL MUTATION ANALYSIS"
[1] 3
  VHL MUTATED VHL WILD-TYPE 
          218           199 
  VHL MUTATED VHL WILD-TYPE 
          218           199 
[1] "SETD2 MUTATION ANALYSIS"
[1] 3
  SETD2 MUTATED SETD2 WILD-TYPE 
             48             369 
  SETD2 MUTATED SETD2 WILD-TYPE 
             48             369 
[1] "PBRM1 MUTATION ANALYSIS"
[1] 3
  PBRM1 MUTATED PBRM1 WILD-TYPE 
            137             280 
  PBRM1 MUTATED PBRM1 WILD-TYPE 
            137             280 
[1] "KDM5C MUTATION ANALYSIS"
[1] 3
  KDM5C MUTATED KDM5C WILD-TYPE 
             27             390 
  KDM5C MUTATED KDM5C WILD-TYPE 
             27             390 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            18            399 
  PTEN MUTATED PTEN WILD-TYPE 
            18            399 
[1] "TSPAN19 MUTATION ANALYSIS"
[1] 3
  TSPAN19 MUTATED TSPAN19 WILD-TYPE 
                5               412 
  TSPAN19 MUTATED TSPAN19 WILD-TYPE 
                5               412 
[1] "TCEB1 MUTATION ANALYSIS"
[1] 3
  TCEB1 MUTATED TCEB1 WILD-TYPE 
              3             414 
  TCEB1 MUTATED TCEB1 WILD-TYPE 
              3             414 
[1] "NEFH MUTATION ANALYSIS"
[1] 3
  NEFH MUTATED NEFH WILD-TYPE 
             6            411 
  NEFH MUTATED NEFH WILD-TYPE 
             6            411 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 417 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 417 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = BAP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        1      7      0
  BAP1 WILD-TYPE     21     14      3
D1V1, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            1             21
  CLUS_2            7             14
  CLUS_3            0              3
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        0      1      7
  BAP1 WILD-TYPE      4     21     13
D1V2, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            0              4
  CLUS_2            1             21
  CLUS_3            7             13
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED       20     13      9
  BAP1 WILD-TYPE    117    172     84
D1V3, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1           20            117
  CLUS_2           13            172
  CLUS_3            9             84
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED       15      1      7
  BAP1 WILD-TYPE     72     97     51
D1V4, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1           15             72
  CLUS_2            1             97
  CLUS_3            7             51
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BAP1 MUTATED        2     11     10      1      2     10
  BAP1 WILD-TYPE     86     64     64     58     36     42
D1V5, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED       10     15     11
  BAP1 WILD-TYPE    155    118     77
D1V6, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1           10            155
  CLUS_2           15            118
  CLUS_3           11             77
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        5      8     29
  BAP1 WILD-TYPE    172     65    136
D1V7, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            5            172
  CLUS_2            8             65
  CLUS_3           29            136
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        5     36      1
  BAP1 WILD-TYPE    183    144     46
D1V8, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            5            183
  CLUS_2           36            144
  CLUS_3            1             46
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        9      6     27
  BAP1 WILD-TYPE     82    174    109
D1V9, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            9             82
  CLUS_2            6            174
  CLUS_3           27            109
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        9     12     21
  BAP1 WILD-TYPE     13    221    131
D1V10, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            9             13
  CLUS_2           12            221
  CLUS_3           21            131
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        3      3      8
  BAP1 WILD-TYPE     36     76     57
D1V11, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            3             36
  CLUS_2            3             76
  CLUS_3            8             57
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAP1 MUTATED        0      2     10      1      1
  BAP1 WILD-TYPE      2     37     59      8     63
D1V12, multiclass

Clustering(2) Variable = VHL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED       16      7      1
  VHL WILD-TYPE      6     14      2
D2V1, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1          16             6
  CLUS_2           7            14
  CLUS_3           1             2
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED        1     16      7
  VHL WILD-TYPE      3      6     13
D2V2, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           1             3
  CLUS_2          16             6
  CLUS_3           7            13
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED       63    109     46
  VHL WILD-TYPE     74     76     47
D2V3, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1          63            74
  CLUS_2         109            76
  CLUS_3          46            47
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED       51     54     31
  VHL WILD-TYPE     36     44     27
D2V4, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1          51            36
  CLUS_2          54            44
  CLUS_3          31            27
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VHL MUTATED       53     41     34     26     21     25
  VHL WILD-TYPE     35     34     40     33     17     27
D2V5, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED       90     66     44
  VHL WILD-TYPE     75     67     44
D2V6, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1          90            75
  CLUS_2          66            67
  CLUS_3          44            44
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED      110     32     75
  VHL WILD-TYPE     67     41     90
D2V7, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1         110            67
  CLUS_2          32            41
  CLUS_3          75            90
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED      113     85     19
  VHL WILD-TYPE     75     95     28
D2V8, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1         113            75
  CLUS_2          85            95
  CLUS_3          19            28
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED       46    106     61
  VHL WILD-TYPE     45     74     75
D2V9, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1          46            45
  CLUS_2         106            74
  CLUS_3          61            75
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED        9    129     75
  VHL WILD-TYPE     13    104     77
D2V10, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           9            13
  CLUS_2         129           104
  CLUS_3          75            77
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED       18     50     32
  VHL WILD-TYPE     21     29     33
D2V11, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1          18            21
  CLUS_2          50            29
  CLUS_3          32            33
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VHL MUTATED        1     18     35      7     39
  VHL WILD-TYPE      1     21     34      2     25
D2V12, multiclass

Clustering(3) Variable = SETD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        2      3      0
  SETD2 WILD-TYPE     20     18      3
D3V1, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             2              20
  CLUS_2             3              18
  CLUS_3             0               3
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        0      2      3
  SETD2 WILD-TYPE      4     20     17
D3V2, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             2              20
  CLUS_3             3              17
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED       16     19     13
  SETD2 WILD-TYPE    121    166     80
D3V3, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            16             121
  CLUS_2            19             166
  CLUS_3            13              80
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED       24      7      0
  SETD2 WILD-TYPE     63     91     58
D3V4, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            24              63
  CLUS_2             7              91
  CLUS_3             0              58
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SETD2 MUTATED       16      6      7      6      3      7
  SETD2 WILD-TYPE     72     69     67     53     35     45
D3V5, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED       15     19     11
  SETD2 WILD-TYPE    150    114     77
D3V6, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            15             150
  CLUS_2            19             114
  CLUS_3            11              77
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED       18      9     21
  SETD2 WILD-TYPE    159     64    144
D3V7, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            18             159
  CLUS_2             9              64
  CLUS_3            21             144
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED       20     23      5
  SETD2 WILD-TYPE    168    157     42
D3V8, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            20             168
  CLUS_2            23             157
  CLUS_3             5              42
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        8     21     17
  SETD2 WILD-TYPE     83    159    119
D3V9, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             8              83
  CLUS_2            21             159
  CLUS_3            17             119
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        1     30     15
  SETD2 WILD-TYPE     21    203    137
D3V10, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             1              21
  CLUS_2            30             203
  CLUS_3            15             137
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        4     10      8
  SETD2 WILD-TYPE     35     69     57
D3V11, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             4              35
  CLUS_2            10              69
  CLUS_3             8              57
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETD2 MUTATED        0      2     11      1      8
  SETD2 WILD-TYPE      2     37     58      8     56
D3V12, multiclass

Clustering(4) Variable = PBRM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED       10      4      1
  PBRM1 WILD-TYPE     12     17      2
D4V1, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            10              12
  CLUS_2             4              17
  CLUS_3             1               2
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED        1     10      4
  PBRM1 WILD-TYPE      3     12     16
D4V2, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             1               3
  CLUS_2            10              12
  CLUS_3             4              16
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED       49     69     19
  PBRM1 WILD-TYPE     88    116     74
D4V3, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            49              88
  CLUS_2            69             116
  CLUS_3            19              74
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED       40     44      7
  PBRM1 WILD-TYPE     47     54     51
D4V4, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            40              47
  CLUS_2            44              54
  CLUS_3             7              51
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PBRM1 MUTATED       46     16     22     17     10     16
  PBRM1 WILD-TYPE     42     59     52     42     28     36
D4V5, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED       53     47     27
  PBRM1 WILD-TYPE    112     86     61
D4V6, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            53             112
  CLUS_2            47              86
  CLUS_3            27              61
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED       72     15     49
  PBRM1 WILD-TYPE    105     58    116
D4V7, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            72             105
  CLUS_2            15              58
  CLUS_3            49             116
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED       74     52     10
  PBRM1 WILD-TYPE    114    128     37
D4V8, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            74             114
  CLUS_2            52             128
  CLUS_3            10              37
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED       20     74     39
  PBRM1 WILD-TYPE     71    106     97
D4V9, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            20              71
  CLUS_2            74             106
  CLUS_3            39              97
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED        4     92     37
  PBRM1 WILD-TYPE     18    141    115
D4V10, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             4              18
  CLUS_2            92             141
  CLUS_3            37             115
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED        3     38     20
  PBRM1 WILD-TYPE     36     41     45
D4V11, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             3              36
  CLUS_2            38              41
  CLUS_3            20              45
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PBRM1 MUTATED        1      7     23      1     29
  PBRM1 WILD-TYPE      1     32     46      8     35
D4V12, multiclass

Clustering(5) Variable = KDM5C MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        0      0      0
  KDM5C WILD-TYPE     22     21      3
D5V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        0      0      0
  KDM5C WILD-TYPE      4     22     20
D5V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED       12     10      5
  KDM5C WILD-TYPE    125    175     88
D5V3, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1            12             125
  CLUS_2            10             175
  CLUS_3             5              88
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED       10      4      4
  KDM5C WILD-TYPE     77     94     54
D5V4, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1            10              77
  CLUS_2             4              94
  CLUS_3             4              54
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KDM5C MUTATED        5      3      6      2      2      6
  KDM5C WILD-TYPE     83     72     68     57     36     46
D5V5, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        8     10      6
  KDM5C WILD-TYPE    157    123     82
D5V6, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             8             157
  CLUS_2            10             123
  CLUS_3             6              82
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        9      2     15
  KDM5C WILD-TYPE    168     71    150
D5V7, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             9             168
  CLUS_2             2              71
  CLUS_3            15             150
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED       11     13      2
  KDM5C WILD-TYPE    177    167     45
D5V8, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1            11             177
  CLUS_2            13             167
  CLUS_3             2              45
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        2      9     16
  KDM5C WILD-TYPE     89    171    120
D5V9, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             2              89
  CLUS_2             9             171
  CLUS_3            16             120
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        2     16      9
  KDM5C WILD-TYPE     20    217    143
D5V10, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             2              20
  CLUS_2            16             217
  CLUS_3             9             143
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        0      5      4
  KDM5C WILD-TYPE     39     74     61
D5V11, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             0              39
  CLUS_2             5              74
  CLUS_3             4              61
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM5C MUTATED        0      1      6      0      2
  KDM5C WILD-TYPE      2     38     63      9     62
D5V12, multiclass

Clustering(6) Variable = PTEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        0      4      0
  PTEN WILD-TYPE     22     17      3
D6V1, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0             22
  CLUS_2            4             17
  CLUS_3            0              3
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        0      0      4
  PTEN WILD-TYPE      4     22     16
D6V2, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0              4
  CLUS_2            0             22
  CLUS_3            4             16
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        9      4      4
  PTEN WILD-TYPE    128    181     89
D6V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            9            128
  CLUS_2            4            181
  CLUS_3            4             89
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        5      1      3
  PTEN WILD-TYPE     82     97     55
D6V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             97
  CLUS_3            3             55
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTEN MUTATED        2      6      2      2      1      5
  PTEN WILD-TYPE     86     69     72     57     37     47
D6V5, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        9      2      7
  PTEN WILD-TYPE    156    131     81
D6V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            9            156
  CLUS_2            2            131
  CLUS_3            7             81
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        1      4     13
  PTEN WILD-TYPE    176     69    152
D6V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1            176
  CLUS_2            4             69
  CLUS_3           13            152
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        4     13      1
  PTEN WILD-TYPE    184    167     46
D6V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            4            184
  CLUS_2           13            167
  CLUS_3            1             46
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        6      3      9
  PTEN WILD-TYPE     85    177    127
D6V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            6             85
  CLUS_2            3            177
  CLUS_3            9            127
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        0      7     11
  PTEN WILD-TYPE     22    226    141
D6V10, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0             22
  CLUS_2            7            226
  CLUS_3           11            141
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        0      0      5
  PTEN WILD-TYPE     39     79     60
D6V11, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0             39
  CLUS_2            0             79
  CLUS_3            5             60
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        0      2      3      0      0
  PTEN WILD-TYPE      2     37     66      9     64
D6V12, multiclass

Clustering(7) Variable = TSPAN19 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        0      1      0
  TSPAN19 WILD-TYPE     22     20      3
D7V1, multiclass
[1] "Remove cluster labels:" "TSPAN19 MUTATED"       
clus
  TSPAN19 MUTATED TSPAN19 WILD-TYPE 
                1                45 
       TCGA-A3-3308        TCGA-A3-3311        TCGA-A3-3316        TCGA-A3-3317 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-A3-3319        TCGA-A3-3320        TCGA-A3-3322        TCGA-A3-3323 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-A3-3326        TCGA-A3-3346        TCGA-A3-3347        TCGA-A3-3349 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-A3-3362        TCGA-A3-3363        TCGA-A3-3365        TCGA-A3-3372 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-A3-3378        TCGA-A3-3380        TCGA-A3-3382        TCGA-A3-3383 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-AK-3444        TCGA-AK-3455        TCGA-AK-3456        TCGA-AS-3778 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-4099        TCGA-B8-4143        TCGA-B8-4148 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-4151        TCGA-B8-4154        TCGA-B8-4620        TCGA-BP-4161 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4162        TCGA-BP-4163        TCGA-BP-4164        TCGA-BP-4167 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4634        TCGA-CJ-4636        TCGA-CJ-4637        TCGA-CJ-4638 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4639        TCGA-CJ-4640        TCGA-CJ-4641        TCGA-CJ-4643 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4644 
"TSPAN19 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        1      0      0
  TSPAN19 WILD-TYPE      3     22     20
D7V2, multiclass
[1] "Remove cluster labels:" "TSPAN19 MUTATED"       
clus
  TSPAN19 MUTATED TSPAN19 WILD-TYPE 
                1                45 
       TCGA-A3-3308        TCGA-A3-3311        TCGA-A3-3316        TCGA-A3-3317 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-A3-3319        TCGA-A3-3320        TCGA-A3-3322        TCGA-A3-3323 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-A3-3326        TCGA-A3-3346        TCGA-A3-3347        TCGA-A3-3349 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-A3-3362        TCGA-A3-3363        TCGA-A3-3365        TCGA-A3-3372 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-A3-3378        TCGA-A3-3380        TCGA-A3-3382        TCGA-A3-3383 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-AK-3444        TCGA-AK-3455        TCGA-AK-3456        TCGA-AS-3778 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-4099        TCGA-B8-4143        TCGA-B8-4148 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-4151        TCGA-B8-4154        TCGA-B8-4620        TCGA-BP-4161 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4162        TCGA-BP-4163        TCGA-BP-4164        TCGA-BP-4167 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4634        TCGA-CJ-4636        TCGA-CJ-4637        TCGA-CJ-4638 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4639        TCGA-CJ-4640        TCGA-CJ-4641        TCGA-CJ-4643 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4644 
"TSPAN19 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        3      1      1
  TSPAN19 WILD-TYPE    134    184     92
D7V3, multiclass
        clus
vv       TSPAN19 MUTATED TSPAN19 WILD-TYPE
  CLUS_1               3               134
  CLUS_2               1               184
  CLUS_3               1                92
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        1      1      0
  TSPAN19 WILD-TYPE     86     97     58
D7V4, multiclass
[1] "Remove cluster labels:" "TSPAN19 MUTATED"       
clus
  TSPAN19 MUTATED TSPAN19 WILD-TYPE 
                2               241 
       TCGA-A3-3357        TCGA-A3-3358        TCGA-A3-3367        TCGA-A3-3370 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-A3-3373        TCGA-A3-3376        TCGA-A3-3385        TCGA-A3-3387 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-AK-3425        TCGA-AK-3428        TCGA-AK-3431        TCGA-AK-3434 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-AK-3445        TCGA-AK-3450        TCGA-AK-3454        TCGA-AK-3458 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-AK-3460        TCGA-AK-3461        TCGA-B0-4690        TCGA-B0-4691 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4693        TCGA-B0-4694        TCGA-B0-4697        TCGA-B0-4700 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4703        TCGA-B0-4706        TCGA-B0-4707        TCGA-B0-4710 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4712        TCGA-B0-4713        TCGA-B0-4714        TCGA-B0-4718 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4810        TCGA-B0-4811        TCGA-B0-4813        TCGA-B0-4814 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4815        TCGA-B0-4816        TCGA-B0-4817        TCGA-B0-4818 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4819        TCGA-B0-4822        TCGA-B0-4823        TCGA-B0-4824 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4827        TCGA-B0-4828        TCGA-B0-4841        TCGA-B0-4842 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4843        TCGA-B0-4844        TCGA-B0-4845        TCGA-B0-4846 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4847        TCGA-B0-4848        TCGA-B0-4849        TCGA-B0-4852 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4945        TCGA-B0-5080        TCGA-B0-5092        TCGA-B0-5094 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5095        TCGA-B0-5096        TCGA-B0-5097        TCGA-B0-5099 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5100        TCGA-B0-5102        TCGA-B0-5104        TCGA-B0-5106 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5107        TCGA-B0-5108        TCGA-B0-5109        TCGA-B0-5110 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5113        TCGA-B0-5116        TCGA-B0-5119        TCGA-B0-5120 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5121        TCGA-B0-5399        TCGA-B0-5400        TCGA-B0-5402 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5691        TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5695        TCGA-B0-5696        TCGA-B0-5697        TCGA-B0-5698 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5699        TCGA-B0-5701        TCGA-B0-5702        TCGA-B0-5703 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5705        TCGA-B0-5706        TCGA-B0-5707        TCGA-B0-5709 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5710        TCGA-B0-5711        TCGA-B0-5713        TCGA-B0-5812 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-4101        TCGA-B2-5633        TCGA-B2-5635 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B2-5641        TCGA-B4-5377        TCGA-B8-4146        TCGA-B8-4153 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-4621        TCGA-B8-4622        TCGA-B8-5158        TCGA-B8-5159 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-5163        TCGA-B8-5164        TCGA-B8-5165        TCGA-B8-5545 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-5546        TCGA-B8-5549        TCGA-B8-5550        TCGA-B8-5551 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-5552        TCGA-B8-5553        TCGA-BP-4770        TCGA-BP-4782 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4801        TCGA-BP-4993        TCGA-BP-5010        TCGA-BP-5168 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-5169        TCGA-BP-5170        TCGA-BP-5173        TCGA-BP-5174 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-5175        TCGA-BP-5176        TCGA-BP-5177        TCGA-BP-5178 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-5180        TCGA-BP-5182        TCGA-BP-5183        TCGA-BP-5184 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-5185        TCGA-BP-5186        TCGA-BP-5187        TCGA-BP-5189 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-5190        TCGA-BP-5191        TCGA-BP-5192        TCGA-BP-5194 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-5195        TCGA-BP-5196        TCGA-BP-5198        TCGA-BP-5199 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-5200        TCGA-BP-5201        TCGA-BP-5202        TCGA-CJ-4882 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4897        TCGA-CJ-4902        TCGA-CJ-4903        TCGA-CJ-4904 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4905        TCGA-CJ-4907        TCGA-CJ-4908        TCGA-CJ-4912 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4913        TCGA-CJ-4916        TCGA-CJ-4918        TCGA-CJ-4920 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4923        TCGA-CJ-5671        TCGA-CJ-5672        TCGA-CJ-5675 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-5676        TCGA-CJ-5677        TCGA-CJ-5678        TCGA-CJ-5679 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-5680        TCGA-CJ-5681        TCGA-CJ-5682        TCGA-CJ-5683 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-5684        TCGA-CJ-5686        TCGA-CJ-6027        TCGA-CJ-6028 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-6030        TCGA-CJ-6031        TCGA-CJ-6032        TCGA-CJ-6033 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CW-5580        TCGA-CW-5581        TCGA-CW-5583        TCGA-CW-5585 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CW-5588        TCGA-CW-5589        TCGA-CW-5591        TCGA-CW-6087 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CW-6090        TCGA-CW-6093        TCGA-CZ-4853        TCGA-CZ-4856 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-4859        TCGA-CZ-4863        TCGA-CZ-4865        TCGA-CZ-4866 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5451        TCGA-CZ-5452        TCGA-CZ-5453        TCGA-CZ-5454 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5455        TCGA-CZ-5456        TCGA-CZ-5457        TCGA-CZ-5458 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5459        TCGA-CZ-5460        TCGA-CZ-5461        TCGA-CZ-5462 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5463        TCGA-CZ-5465        TCGA-CZ-5466        TCGA-CZ-5467 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5468        TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5982 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5984        TCGA-CZ-5985        TCGA-CZ-5986        TCGA-CZ-5987 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5988        TCGA-CZ-5989        TCGA-DV-5565        TCGA-DV-5566 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-DV-5568        TCGA-DV-5569        TCGA-DV-5574        TCGA-DV-5575 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-DV-5576        TCGA-EU-5904        TCGA-EU-5905        TCGA-EU-5906 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-EU-5907 
"TSPAN19 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TSPAN19 MUTATED        1      0      0      3      1      0
  TSPAN19 WILD-TYPE     87     75     74     56     37     52
D7V5, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        4      0      1
  TSPAN19 WILD-TYPE    161    133     87
D7V6, multiclass
        clus
vv       TSPAN19 MUTATED TSPAN19 WILD-TYPE
  CLUS_1               4               161
  CLUS_2               0               133
  CLUS_3               1                87
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        2      0      3
  TSPAN19 WILD-TYPE    175     73    162
D7V7, multiclass
        clus
vv       TSPAN19 MUTATED TSPAN19 WILD-TYPE
  CLUS_1               2               175
  CLUS_2               0                73
  CLUS_3               3               162
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        3      1      1
  TSPAN19 WILD-TYPE    185    179     46
D7V8, multiclass
        clus
vv       TSPAN19 MUTATED TSPAN19 WILD-TYPE
  CLUS_1               3               185
  CLUS_2               1               179
  CLUS_3               1                46
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        1      1      3
  TSPAN19 WILD-TYPE     90    179    133
D7V9, multiclass
        clus
vv       TSPAN19 MUTATED TSPAN19 WILD-TYPE
  CLUS_1               1                90
  CLUS_2               1               179
  CLUS_3               3               133
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        1      2      2
  TSPAN19 WILD-TYPE     21    231    150
D7V10, multiclass
        clus
vv       TSPAN19 MUTATED TSPAN19 WILD-TYPE
  CLUS_1               1                21
  CLUS_2               2               231
  CLUS_3               2               150
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        1      0      1
  TSPAN19 WILD-TYPE     38     79     64
D7V11, multiclass
[1] "Remove cluster labels:" "TSPAN19 MUTATED"       
clus
  TSPAN19 MUTATED TSPAN19 WILD-TYPE 
                2               181 
       TCGA-A3-3317        TCGA-A3-3358        TCGA-A3-3387        TCGA-AK-3458 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4700        TCGA-B0-4706        TCGA-B0-4710        TCGA-B0-4712 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4810        TCGA-B0-4811        TCGA-B0-4815        TCGA-B0-4816 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4818        TCGA-B0-4833        TCGA-B0-4836        TCGA-B0-4837 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4852        TCGA-B0-5075        TCGA-B0-5080        TCGA-B0-5085 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5088        TCGA-B0-5399        TCGA-B0-5400        TCGA-B0-5402 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5691        TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5695        TCGA-B0-5696        TCGA-B0-5697        TCGA-B0-5698 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5699        TCGA-B0-5701        TCGA-B0-5702        TCGA-B0-5703 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5705        TCGA-B0-5706        TCGA-B0-5707        TCGA-B0-5709 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5710        TCGA-B0-5711        TCGA-B0-5713        TCGA-B0-5812 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-5633        TCGA-B2-5635        TCGA-B2-5641 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B4-5377        TCGA-B8-4146        TCGA-B8-4153        TCGA-B8-4621 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-5545        TCGA-B8-5546        TCGA-B8-5549        TCGA-B8-5550 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-5551        TCGA-B8-5552        TCGA-B8-5553        TCGA-BP-4173 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4340        TCGA-BP-4759        TCGA-BP-4761        TCGA-BP-4770 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4771        TCGA-BP-4787        TCGA-BP-4789        TCGA-BP-4790 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4797        TCGA-BP-4804        TCGA-BP-4807        TCGA-BP-4960 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4961        TCGA-BP-4967        TCGA-BP-4968        TCGA-BP-4970 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4971        TCGA-BP-4973        TCGA-BP-4974        TCGA-BP-4975 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4976        TCGA-BP-4977        TCGA-BP-4981        TCGA-BP-4982 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4985        TCGA-BP-4986        TCGA-BP-4987        TCGA-BP-4988 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4992        TCGA-BP-4995        TCGA-BP-4998        TCGA-BP-5000 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-5001        TCGA-BP-5007        TCGA-BP-5008        TCGA-BP-5009 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4635        TCGA-CJ-4870        TCGA-CJ-4875        TCGA-CJ-4876 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4878        TCGA-CJ-4881        TCGA-CJ-4887        TCGA-CJ-4888 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4889        TCGA-CJ-4890        TCGA-CJ-4891        TCGA-CJ-4895 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4899        TCGA-CJ-5671        TCGA-CJ-5672        TCGA-CJ-5675 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-5676        TCGA-CJ-5677        TCGA-CJ-5678        TCGA-CJ-5679 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-5680        TCGA-CJ-5681        TCGA-CJ-5682        TCGA-CJ-5683 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-5684        TCGA-CJ-5686        TCGA-CJ-6027        TCGA-CJ-6028 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-6030        TCGA-CJ-6031        TCGA-CJ-6032        TCGA-CJ-6033 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CW-5580        TCGA-CW-5581        TCGA-CW-5583        TCGA-CW-5585 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CW-5588        TCGA-CW-5589        TCGA-CW-5591        TCGA-CW-6087 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CW-6090        TCGA-CW-6093        TCGA-CZ-4854        TCGA-CZ-4857 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-4858        TCGA-CZ-4863        TCGA-CZ-4865        TCGA-CZ-4866 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5451        TCGA-CZ-5452        TCGA-CZ-5453        TCGA-CZ-5454 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5455        TCGA-CZ-5456        TCGA-CZ-5457        TCGA-CZ-5458 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5459        TCGA-CZ-5460        TCGA-CZ-5461        TCGA-CZ-5462 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5463        TCGA-CZ-5465        TCGA-CZ-5466        TCGA-CZ-5467 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5468        TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5982 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5984        TCGA-CZ-5985        TCGA-CZ-5986        TCGA-CZ-5987 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5988        TCGA-CZ-5989        TCGA-DV-5565        TCGA-DV-5566 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-DV-5568        TCGA-DV-5569        TCGA-DV-5574        TCGA-DV-5575 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-DV-5576        TCGA-EU-5904        TCGA-EU-5905        TCGA-EU-5906 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-EU-5907 
"TSPAN19 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSPAN19 MUTATED        0      1      0      0      1
  TSPAN19 WILD-TYPE      2     38     69      9     63
D7V12, multiclass
[1] "Remove cluster labels:" "TSPAN19 MUTATED"       
clus
  TSPAN19 MUTATED TSPAN19 WILD-TYPE 
                2               181 
       TCGA-A3-3317        TCGA-A3-3358        TCGA-A3-3387        TCGA-AK-3458 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4700        TCGA-B0-4706        TCGA-B0-4710        TCGA-B0-4712 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4810        TCGA-B0-4811        TCGA-B0-4815        TCGA-B0-4816 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4818        TCGA-B0-4833        TCGA-B0-4836        TCGA-B0-4837 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4852        TCGA-B0-5075        TCGA-B0-5080        TCGA-B0-5085 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5088        TCGA-B0-5399        TCGA-B0-5400        TCGA-B0-5402 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5691        TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5695        TCGA-B0-5696        TCGA-B0-5697        TCGA-B0-5698 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5699        TCGA-B0-5701        TCGA-B0-5702        TCGA-B0-5703 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5705        TCGA-B0-5706        TCGA-B0-5707        TCGA-B0-5709 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5710        TCGA-B0-5711        TCGA-B0-5713        TCGA-B0-5812 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-5633        TCGA-B2-5635        TCGA-B2-5641 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B4-5377        TCGA-B8-4146        TCGA-B8-4153        TCGA-B8-4621 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-5545        TCGA-B8-5546        TCGA-B8-5549        TCGA-B8-5550 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-5551        TCGA-B8-5552        TCGA-B8-5553        TCGA-BP-4173 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4340        TCGA-BP-4759        TCGA-BP-4761        TCGA-BP-4770 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4771        TCGA-BP-4787        TCGA-BP-4789        TCGA-BP-4790 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4797        TCGA-BP-4804        TCGA-BP-4807        TCGA-BP-4960 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4961        TCGA-BP-4967        TCGA-BP-4968        TCGA-BP-4970 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4971        TCGA-BP-4973        TCGA-BP-4974        TCGA-BP-4975 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4976        TCGA-BP-4977        TCGA-BP-4981        TCGA-BP-4982 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4985        TCGA-BP-4986        TCGA-BP-4987        TCGA-BP-4988 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4992        TCGA-BP-4995        TCGA-BP-4998        TCGA-BP-5000 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-5001        TCGA-BP-5007        TCGA-BP-5008        TCGA-BP-5009 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4635        TCGA-CJ-4870        TCGA-CJ-4875        TCGA-CJ-4876 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4878        TCGA-CJ-4881        TCGA-CJ-4887        TCGA-CJ-4888 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4889        TCGA-CJ-4890        TCGA-CJ-4891        TCGA-CJ-4895 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4899        TCGA-CJ-5671        TCGA-CJ-5672        TCGA-CJ-5675 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-5676        TCGA-CJ-5677        TCGA-CJ-5678        TCGA-CJ-5679 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-5680        TCGA-CJ-5681        TCGA-CJ-5682        TCGA-CJ-5683 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-5684        TCGA-CJ-5686        TCGA-CJ-6027        TCGA-CJ-6028 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-6030        TCGA-CJ-6031        TCGA-CJ-6032        TCGA-CJ-6033 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CW-5580        TCGA-CW-5581        TCGA-CW-5583        TCGA-CW-5585 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CW-5588        TCGA-CW-5589        TCGA-CW-5591        TCGA-CW-6087 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CW-6090        TCGA-CW-6093        TCGA-CZ-4854        TCGA-CZ-4857 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-4858        TCGA-CZ-4863        TCGA-CZ-4865        TCGA-CZ-4866 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5451        TCGA-CZ-5452        TCGA-CZ-5453        TCGA-CZ-5454 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5455        TCGA-CZ-5456        TCGA-CZ-5457        TCGA-CZ-5458 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5459        TCGA-CZ-5460        TCGA-CZ-5461        TCGA-CZ-5462 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5463        TCGA-CZ-5465        TCGA-CZ-5466        TCGA-CZ-5467 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5468        TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5982 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5984        TCGA-CZ-5985        TCGA-CZ-5986        TCGA-CZ-5987 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5988        TCGA-CZ-5989        TCGA-DV-5565        TCGA-DV-5566 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-DV-5568        TCGA-DV-5569        TCGA-DV-5574        TCGA-DV-5575 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-DV-5576        TCGA-EU-5904        TCGA-EU-5905        TCGA-EU-5906 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-EU-5907 
"TSPAN19 WILD-TYPE" 

Clustering(8) Variable = TCEB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        0      0      0
  TCEB1 WILD-TYPE     22     21      3
D8V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        0      0      0
  TCEB1 WILD-TYPE      4     22     20
D8V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        0      0      3
  TCEB1 WILD-TYPE    137    185     90
D8V3, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             0             137
  CLUS_2             0             185
  CLUS_3             3              90
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        0      1      0
  TCEB1 WILD-TYPE     87     97     58
D8V4, multiclass
[1] "Remove cluster labels:" "TCEB1 MUTATED"         
clus
  TCEB1 MUTATED TCEB1 WILD-TYPE 
              1             242 
     TCGA-A3-3357      TCGA-A3-3358      TCGA-A3-3367      TCGA-A3-3370 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A3-3373      TCGA-A3-3376      TCGA-A3-3385      TCGA-A3-3387 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-AK-3425      TCGA-AK-3428      TCGA-AK-3431      TCGA-AK-3434 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-AK-3445      TCGA-AK-3450      TCGA-AK-3454      TCGA-AK-3458 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-AK-3460      TCGA-AK-3461      TCGA-B0-4690      TCGA-B0-4691 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4693      TCGA-B0-4694      TCGA-B0-4697      TCGA-B0-4700 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4703      TCGA-B0-4706      TCGA-B0-4707      TCGA-B0-4710 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4712      TCGA-B0-4713      TCGA-B0-4714      TCGA-B0-4718 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4810      TCGA-B0-4811      TCGA-B0-4813      TCGA-B0-4814 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4815      TCGA-B0-4816      TCGA-B0-4817      TCGA-B0-4818 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4819      TCGA-B0-4822      TCGA-B0-4823      TCGA-B0-4824 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4827      TCGA-B0-4828      TCGA-B0-4841      TCGA-B0-4842 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4843      TCGA-B0-4844      TCGA-B0-4845      TCGA-B0-4846 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4847      TCGA-B0-4848      TCGA-B0-4849      TCGA-B0-4852 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4945      TCGA-B0-5080      TCGA-B0-5092      TCGA-B0-5094 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5095      TCGA-B0-5096      TCGA-B0-5097      TCGA-B0-5099 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5100      TCGA-B0-5102      TCGA-B0-5104      TCGA-B0-5106 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5107      TCGA-B0-5108      TCGA-B0-5109      TCGA-B0-5110 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5113      TCGA-B0-5115      TCGA-B0-5116      TCGA-B0-5119 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5120      TCGA-B0-5121      TCGA-B0-5399      TCGA-B0-5400 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5402      TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5694      TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5697 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5698      TCGA-B0-5699      TCGA-B0-5701      TCGA-B0-5702 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5703      TCGA-B0-5705      TCGA-B0-5706      TCGA-B0-5707 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5709      TCGA-B0-5710      TCGA-B0-5711      TCGA-B0-5713 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5812      TCGA-B2-3924      TCGA-B2-4101      TCGA-B2-5633 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B2-5635      TCGA-B2-5641      TCGA-B4-5377      TCGA-B8-4146 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-4153      TCGA-B8-4621      TCGA-B8-4622      TCGA-B8-5158 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5159      TCGA-B8-5163      TCGA-B8-5164      TCGA-B8-5165 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5546      TCGA-B8-5549      TCGA-B8-5550      TCGA-B8-5551 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5552      TCGA-B8-5553      TCGA-BP-4770      TCGA-BP-4782 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4801      TCGA-BP-4993      TCGA-BP-5010      TCGA-BP-5168 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5169      TCGA-BP-5170      TCGA-BP-5173      TCGA-BP-5174 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5175      TCGA-BP-5176      TCGA-BP-5177      TCGA-BP-5178 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5180      TCGA-BP-5182      TCGA-BP-5183      TCGA-BP-5184 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5185      TCGA-BP-5186      TCGA-BP-5187      TCGA-BP-5189 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5190      TCGA-BP-5191      TCGA-BP-5192      TCGA-BP-5194 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5195      TCGA-BP-5196      TCGA-BP-5198      TCGA-BP-5199 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5200      TCGA-BP-5201      TCGA-BP-5202      TCGA-CJ-4882 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4897      TCGA-CJ-4901      TCGA-CJ-4902      TCGA-CJ-4903 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4904      TCGA-CJ-4905      TCGA-CJ-4907      TCGA-CJ-4908 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4912      TCGA-CJ-4913      TCGA-CJ-4916      TCGA-CJ-4918 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4920      TCGA-CJ-4923      TCGA-CJ-5671      TCGA-CJ-5672 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5675      TCGA-CJ-5676      TCGA-CJ-5677      TCGA-CJ-5678 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5679      TCGA-CJ-5680      TCGA-CJ-5681      TCGA-CJ-5682 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5683      TCGA-CJ-5684      TCGA-CJ-5686      TCGA-CJ-6027 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-6028      TCGA-CJ-6030      TCGA-CJ-6031      TCGA-CJ-6032 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-6033      TCGA-CW-5580      TCGA-CW-5581      TCGA-CW-5583 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-5585      TCGA-CW-5588      TCGA-CW-5589      TCGA-CW-5591 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-6087      TCGA-CW-6090      TCGA-CW-6093      TCGA-CZ-4853 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-4856      TCGA-CZ-4859      TCGA-CZ-4863      TCGA-CZ-4865 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-4866      TCGA-CZ-5451      TCGA-CZ-5452      TCGA-CZ-5453 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5456      TCGA-CZ-5457 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5458      TCGA-CZ-5459      TCGA-CZ-5460      TCGA-CZ-5461 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5465      TCGA-CZ-5466 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5468      TCGA-CZ-5469      TCGA-CZ-5470 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5982      TCGA-CZ-5984      TCGA-CZ-5985      TCGA-CZ-5986 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5987      TCGA-CZ-5988      TCGA-CZ-5989      TCGA-DV-5565 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DV-5566      TCGA-DV-5568      TCGA-DV-5569      TCGA-DV-5574 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DV-5575      TCGA-DV-5576      TCGA-EU-5904      TCGA-EU-5905 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-EU-5906      TCGA-EU-5907 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TCEB1 MUTATED        0      2      1      0      0      0
  TCEB1 WILD-TYPE     88     73     73     59     38     52
D8V5, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        2      1      0
  TCEB1 WILD-TYPE    163    132     88
D8V6, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             2             163
  CLUS_2             1             132
  CLUS_3             0              88
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        0      2      1
  TCEB1 WILD-TYPE    177     71    164
D8V7, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             0             177
  CLUS_2             2              71
  CLUS_3             1             164
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        0      2      1
  TCEB1 WILD-TYPE    188    178     46
D8V8, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             0             188
  CLUS_2             2             178
  CLUS_3             1              46
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        2      1      0
  TCEB1 WILD-TYPE     89    179    136
D8V9, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             2              89
  CLUS_2             1             179
  CLUS_3             0             136
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        0      1      2
  TCEB1 WILD-TYPE     22    232    150
D8V10, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             0              22
  CLUS_2             1             232
  CLUS_3             2             150
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        2      0      0
  TCEB1 WILD-TYPE     37     79     65
D8V11, multiclass
[1] "Remove cluster labels:" "TCEB1 MUTATED"         
clus
  TCEB1 MUTATED TCEB1 WILD-TYPE 
              2             181 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-AK-3458 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4700      TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4810      TCGA-B0-4811      TCGA-B0-4815      TCGA-B0-4816 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4818      TCGA-B0-4833      TCGA-B0-4836      TCGA-B0-4837 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4852      TCGA-B0-5075      TCGA-B0-5080      TCGA-B0-5085 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5088      TCGA-B0-5399      TCGA-B0-5400      TCGA-B0-5402 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5697      TCGA-B0-5698 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5699      TCGA-B0-5701      TCGA-B0-5702      TCGA-B0-5703 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5705      TCGA-B0-5706      TCGA-B0-5707      TCGA-B0-5709 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5710      TCGA-B0-5711      TCGA-B0-5713      TCGA-B0-5812 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-5633      TCGA-B2-5635      TCGA-B2-5641 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B4-5377      TCGA-B8-4146      TCGA-B8-4153      TCGA-B8-4621 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5546      TCGA-B8-5549      TCGA-B8-5550      TCGA-B8-5551 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5552      TCGA-B8-5553      TCGA-BP-4173      TCGA-BP-4331 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4340      TCGA-BP-4759      TCGA-BP-4761      TCGA-BP-4770 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4771      TCGA-BP-4787      TCGA-BP-4789      TCGA-BP-4790 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4797      TCGA-BP-4804      TCGA-BP-4807      TCGA-BP-4960 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968      TCGA-BP-4970 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4971      TCGA-BP-4973      TCGA-BP-4974      TCGA-BP-4975 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4976      TCGA-BP-4977      TCGA-BP-4981      TCGA-BP-4982 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4985      TCGA-BP-4986      TCGA-BP-4987      TCGA-BP-4988 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4989      TCGA-BP-4992      TCGA-BP-4995      TCGA-BP-4998 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5000      TCGA-BP-5001      TCGA-BP-5007      TCGA-BP-5008 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5009      TCGA-CJ-4635      TCGA-CJ-4870      TCGA-CJ-4875 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4876      TCGA-CJ-4878      TCGA-CJ-4881      TCGA-CJ-4887 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4888      TCGA-CJ-4890      TCGA-CJ-4891      TCGA-CJ-4895 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4899      TCGA-CJ-5671      TCGA-CJ-5672      TCGA-CJ-5675 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5677      TCGA-CJ-5678      TCGA-CJ-5679 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5680      TCGA-CJ-5681      TCGA-CJ-5682      TCGA-CJ-5683 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5684      TCGA-CJ-5686      TCGA-CJ-6027      TCGA-CJ-6028 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-6030      TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CJ-6033 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-5580      TCGA-CW-5581      TCGA-CW-5583      TCGA-CW-5585 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-5588      TCGA-CW-5589      TCGA-CW-5591      TCGA-CW-6087 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-6090      TCGA-CW-6093      TCGA-CZ-4854      TCGA-CZ-4857 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-4858      TCGA-CZ-4863      TCGA-CZ-4865      TCGA-CZ-4866 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5451      TCGA-CZ-5452      TCGA-CZ-5453      TCGA-CZ-5454 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5455      TCGA-CZ-5456      TCGA-CZ-5457      TCGA-CZ-5458 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5460      TCGA-CZ-5461      TCGA-CZ-5462 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5463      TCGA-CZ-5465      TCGA-CZ-5466      TCGA-CZ-5467 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5468      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5982 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5984      TCGA-CZ-5985      TCGA-CZ-5986      TCGA-CZ-5987 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5988      TCGA-CZ-5989      TCGA-DV-5565      TCGA-DV-5566 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DV-5568      TCGA-DV-5569      TCGA-DV-5574      TCGA-DV-5575 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DV-5576      TCGA-EU-5904      TCGA-EU-5905      TCGA-EU-5906 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-EU-5907 
"TCEB1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCEB1 MUTATED        0      2      0      0      0
  TCEB1 WILD-TYPE      2     37     69      9     64
D8V12, multiclass
[1] "Remove cluster labels:" "TCEB1 MUTATED"         
clus
  TCEB1 MUTATED TCEB1 WILD-TYPE 
              2             181 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-AK-3458 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4700      TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4810      TCGA-B0-4811      TCGA-B0-4815      TCGA-B0-4816 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4818      TCGA-B0-4833      TCGA-B0-4836      TCGA-B0-4837 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4852      TCGA-B0-5075      TCGA-B0-5080      TCGA-B0-5085 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5088      TCGA-B0-5399      TCGA-B0-5400      TCGA-B0-5402 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5697      TCGA-B0-5698 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5699      TCGA-B0-5701      TCGA-B0-5702      TCGA-B0-5703 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5705      TCGA-B0-5706      TCGA-B0-5707      TCGA-B0-5709 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5710      TCGA-B0-5711      TCGA-B0-5713      TCGA-B0-5812 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-5633      TCGA-B2-5635      TCGA-B2-5641 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B4-5377      TCGA-B8-4146      TCGA-B8-4153      TCGA-B8-4621 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5546      TCGA-B8-5549      TCGA-B8-5550      TCGA-B8-5551 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5552      TCGA-B8-5553      TCGA-BP-4173      TCGA-BP-4331 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4340      TCGA-BP-4759      TCGA-BP-4761      TCGA-BP-4770 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4771      TCGA-BP-4787      TCGA-BP-4789      TCGA-BP-4790 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4797      TCGA-BP-4804      TCGA-BP-4807      TCGA-BP-4960 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968      TCGA-BP-4970 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4971      TCGA-BP-4973      TCGA-BP-4974      TCGA-BP-4975 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4976      TCGA-BP-4977      TCGA-BP-4981      TCGA-BP-4982 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4985      TCGA-BP-4986      TCGA-BP-4987      TCGA-BP-4988 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4989      TCGA-BP-4992      TCGA-BP-4995      TCGA-BP-4998 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5000      TCGA-BP-5001      TCGA-BP-5007      TCGA-BP-5008 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5009      TCGA-CJ-4635      TCGA-CJ-4870      TCGA-CJ-4875 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4876      TCGA-CJ-4878      TCGA-CJ-4881      TCGA-CJ-4887 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4888      TCGA-CJ-4890      TCGA-CJ-4891      TCGA-CJ-4895 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4899      TCGA-CJ-5671      TCGA-CJ-5672      TCGA-CJ-5675 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5677      TCGA-CJ-5678      TCGA-CJ-5679 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5680      TCGA-CJ-5681      TCGA-CJ-5682      TCGA-CJ-5683 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5684      TCGA-CJ-5686      TCGA-CJ-6027      TCGA-CJ-6028 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-6030      TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CJ-6033 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-5580      TCGA-CW-5581      TCGA-CW-5583      TCGA-CW-5585 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-5588      TCGA-CW-5589      TCGA-CW-5591      TCGA-CW-6087 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-6090      TCGA-CW-6093      TCGA-CZ-4854      TCGA-CZ-4857 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-4858      TCGA-CZ-4863      TCGA-CZ-4865      TCGA-CZ-4866 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5451      TCGA-CZ-5452      TCGA-CZ-5453      TCGA-CZ-5454 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5455      TCGA-CZ-5456      TCGA-CZ-5457      TCGA-CZ-5458 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5460      TCGA-CZ-5461      TCGA-CZ-5462 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5463      TCGA-CZ-5465      TCGA-CZ-5466      TCGA-CZ-5467 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5468      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5982 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5984      TCGA-CZ-5985      TCGA-CZ-5986      TCGA-CZ-5987 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5988      TCGA-CZ-5989      TCGA-DV-5565      TCGA-DV-5566 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DV-5568      TCGA-DV-5569      TCGA-DV-5574      TCGA-DV-5575 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DV-5576      TCGA-EU-5904      TCGA-EU-5905      TCGA-EU-5906 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-EU-5907 
"TCEB1 WILD-TYPE" 

Clustering(9) Variable = NEFH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        0      0      0
  NEFH WILD-TYPE     22     21      3
D9V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        0      0      0
  NEFH WILD-TYPE      4     22     20
D9V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        1      3      2
  NEFH WILD-TYPE    136    182     91
D9V3, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            1            136
  CLUS_2            3            182
  CLUS_3            2             91
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        3      2      0
  NEFH WILD-TYPE     84     96     58
D9V4, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            3             84
  CLUS_2            2             96
  CLUS_3            0             58
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NEFH MUTATED        2      1      1      1      0      1
  NEFH WILD-TYPE     86     74     73     58     38     51
D9V5, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        1      2      3
  NEFH WILD-TYPE    164    131     85
D9V6, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            1            164
  CLUS_2            2            131
  CLUS_3            3             85
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        1      3      2
  NEFH WILD-TYPE    176     70    163
D9V7, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            1            176
  CLUS_2            3             70
  CLUS_3            2            163
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        2      2      2
  NEFH WILD-TYPE    186    178     45
D9V8, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            2            186
  CLUS_2            2            178
  CLUS_3            2             45
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        0      4      2
  NEFH WILD-TYPE     91    176    134
D9V9, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            0             91
  CLUS_2            4            176
  CLUS_3            2            134
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        1      4      1
  NEFH WILD-TYPE     21    229    151
D9V10, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            1             21
  CLUS_2            4            229
  CLUS_3            1            151
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        0      3      1
  NEFH WILD-TYPE     39     76     64
D9V11, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            0             39
  CLUS_2            3             76
  CLUS_3            1             64
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEFH MUTATED        0      1      1      0      2
  NEFH WILD-TYPE      2     38     68      9     62
D9V12, multiclass
> q(save="no")
