
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRP-TP/8278651/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/KIRP-TP/8142887/KIRP-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=KIRP-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=KIRP-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/KIRP-TP/8142887/KIRP-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRP-TP/8278651/transformed.cor.cli.txt"

nPatients in clinical file=166, in cluster file=197, common to both=163
[1]  28 163
[1] "AMP PEAK 1(2P23.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE 
                          32                          131 
  AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE 
                          32                          131 
[1] "AMP PEAK 2(2Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE 
                          39                          124 
  AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE 
                          39                          124 
[1] "AMP PEAK 3(3Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 3(3Q22.3) MUTATED AMP PEAK 3(3Q22.3) WILD-TYPE 
                          56                          107 
  AMP PEAK 3(3Q22.3) MUTATED AMP PEAK 3(3Q22.3) WILD-TYPE 
                          56                          107 
[1] "AMP PEAK 4(7Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 4(7Q22.1) MUTATED AMP PEAK 4(7Q22.1) WILD-TYPE 
                          97                           66 
  AMP PEAK 4(7Q22.1) MUTATED AMP PEAK 4(7Q22.1) WILD-TYPE 
                          97                           66 
[1] "AMP PEAK 5(17Q25.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 5(17Q25.2) MUTATED AMP PEAK 5(17Q25.2) WILD-TYPE 
                          120                            43 
  AMP PEAK 5(17Q25.2) MUTATED AMP PEAK 5(17Q25.2) WILD-TYPE 
                          120                            43 
[1] "AMP PEAK 6(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 6(19P13.2) MUTATED AMP PEAK 6(19P13.2) WILD-TYPE 
                           19                           144 
  AMP PEAK 6(19P13.2) MUTATED AMP PEAK 6(19P13.2) WILD-TYPE 
                           19                           144 
[1] "DEL PEAK  1(1P36.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            35                            128 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            35                            128 
[1] "DEL PEAK  2(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE 
                            8                           155 
  DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE 
                            8                           155 
[1] "DEL PEAK  3(3P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE 
                           15                           148 
  DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE 
                           15                           148 
[1] "DEL PEAK  4(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE 
                           18                           145 
  DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE 
                           18                           145 
[1] "DEL PEAK  5(5P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE 
                           10                           153 
  DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE 
                           10                           153 
[1] "DEL PEAK  6(5Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE 
                         11                         152 
  DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE 
                         11                         152 
[1] "DEL PEAK  7(5Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5Q35.2) MUTATED DEL PEAK  7(5Q35.2) WILD-TYPE 
                           10                           153 
  DEL PEAK  7(5Q35.2) MUTATED DEL PEAK  7(5Q35.2) WILD-TYPE 
                           10                           153 
[1] "DEL PEAK  8(6Q21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(6Q21) MUTATED DEL PEAK  8(6Q21) WILD-TYPE 
                         16                         147 
  DEL PEAK  8(6Q21) MUTATED DEL PEAK  8(6Q21) WILD-TYPE 
                         16                         147 
[1] "DEL PEAK  9(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE 
                            17                            146 
  DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE 
                            17                            146 
[1] "DEL PEAK 10(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE 
                           24                           139 
  DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE 
                           24                           139 
[1] "DEL PEAK 11(10P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE 
                             11                             152 
  DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE 
                             11                             152 
[1] "DEL PEAK 12(11Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE 
                            17                            146 
  DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE 
                            17                            146 
[1] "DEL PEAK 13(11Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE 
                            17                            146 
  DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE 
                            17                            146 
[1] "DEL PEAK 14(14Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE 
                            34                            129 
  DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE 
                            34                            129 
[1] "DEL PEAK 15(14Q32.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(14Q32.2) MUTATED DEL PEAK 15(14Q32.2) WILD-TYPE 
                            34                            129 
  DEL PEAK 15(14Q32.2) MUTATED DEL PEAK 15(14Q32.2) WILD-TYPE 
                            34                            129 
[1] "DEL PEAK 16(15Q15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(15Q15.2) MUTATED DEL PEAK 16(15Q15.2) WILD-TYPE 
                            21                            142 
  DEL PEAK 16(15Q15.2) MUTATED DEL PEAK 16(15Q15.2) WILD-TYPE 
                            21                            142 
[1] "DEL PEAK 17(16Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(16Q24.1) MUTATED DEL PEAK 17(16Q24.1) WILD-TYPE 
                             7                            156 
  DEL PEAK 17(16Q24.1) MUTATED DEL PEAK 17(16Q24.1) WILD-TYPE 
                             7                            156 
[1] "DEL PEAK 18(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(19P13.3) MUTATED DEL PEAK 18(19P13.3) WILD-TYPE 
                            16                            147 
  DEL PEAK 18(19P13.3) MUTATED DEL PEAK 18(19P13.3) WILD-TYPE 
                            16                            147 
[1] "DEL PEAK 19(19Q13.42) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(19Q13.42) MUTATED DEL PEAK 19(19Q13.42) WILD-TYPE 
                             15                             148 
  DEL PEAK 19(19Q13.42) MUTATED DEL PEAK 19(19Q13.42) WILD-TYPE 
                             15                             148 
[1] "DEL PEAK 20(21Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(21Q22.3) MUTATED DEL PEAK 20(21Q22.3) WILD-TYPE 
                            31                            132 
  DEL PEAK 20(21Q22.3) MUTATED DEL PEAK 20(21Q22.3) WILD-TYPE 
                            31                            132 
[1] "DEL PEAK 21(XP11.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE 
                            18                            145 
  DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE 
                            18                            145 
[1] "DEL PEAK 22(XQ28) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE 
                         17                         146 
  DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE 
                         17                         146 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "RADIATIONTHERAPY"                      
[15] "KARNOFSKYPERFORMANCESCORE"             
[16] "HISTOLOGICALTYPE"                      
[17] "RADIATIONS.RADIATION.REGIMENINDICATION"
[18] "NUMBERPACKYEARSSMOKED"                 
[19] "YEAROFTOBACCOSMOKINGONSET"             
[20] "GLEASON_SCORE"                         
[21] "PSA_VALUE"                             
[22] "DAYS_TO_PSA"                           
[23] "BATCHNUMBER"                           

Input Data has 23 rows and 163 columns.

[1] "Batch" "23"   
[1] "Last Follow UP"
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7584 TCGA-A4-7585 
         554           21          493            3           NA           NA 
TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7828 TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 
         582           27           NA            7           49            2 
TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 TCGA-A4-8312 TCGA-A4-8515 TCGA-A4-8516 
         140            1            2           NA           21           23 
TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A4ZT TCGA-A4-A57E 
           1            3            9            1           NA           NA 
TCGA-A4-A5DU TCGA-A4-A5XZ TCGA-A4-A5Y0 TCGA-A4-A5Y1 TCGA-A4-A6HP TCGA-AL-3466 
          NA            2          118           87            4           NA 
TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 
        1778         1636          412          923          763         1357 
TCGA-B1-5398 TCGA-B1-7332 TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 
         595          223         1029          307          930         1049 
TCGA-B3-8121 TCGA-B3-A6W5 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 
         379           85         1536          857          803          627 
TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A44B 
          14           35          460         1338          671           64 
TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5876 
         278          207            5          102         2639          586 
TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 
         270         1938           NA           NA         1454           NA 
TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 
        1242          792          921          792          771          403 
TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 
          NA          233           29          364           NA           84 
TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 
        3760           NA         2948         2839           NA         1864 
TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 
        1533         1516          799          612           NA          232 
TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 
         214          218          116          353          414         3950 
TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 
        1093         1142          744          419          114          445 
TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 
          92          876         2429         2460           NA         1856 
TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A4JJ TCGA-F9-A7VF 
        1670         1040          578          757           97            7 
TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 
         208         1575         1479           NA         1194         1059 
TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-7502 TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 
         765          446          786          279         5925          393 
TCGA-GL-7966 TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T TCGA-HE-7128 
         112          236           32          178           91           NA 
TCGA-HE-7129 TCGA-HE-7130 TCGA-HE-A5NF TCGA-HE-A5NH TCGA-HE-A5NL TCGA-IA-A40U 
          NA           NA           NA           NA           NA          511 
TCGA-IA-A40X TCGA-IA-A40Y TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 
         430           62          677          649          146            2 
TCGA-J7-6720 TCGA-J7-8537 TCGA-KV-A6GD TCGA-KV-A6GE TCGA-KV-A74V TCGA-MH-A55W 
          NA            4          160          506          161          398 
TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5E6 
         391          543          438          292          148         3035 
TCGA-P4-A5E7 TCGA-P4-A5EA TCGA-P4-A5EB TCGA-P4-A5ED TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 
        2653           NA         2584         2816          113          174 
TCGA-Q2-A5QZ 
          57 
Variable 1:'AGE':	nDistinctValues=49,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=128,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=15,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 14:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 16:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 17:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 18:'NUMBERPACKYEARSSMOKED':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 21:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 23:'BATCH.NUMBER':	nDistinctValues=14,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                         "NEOPLASM.DISEASESTAGE"      
[3] "PATHOLOGY.T.STAGE"           "PATHOLOGY.N.STAGE"          
[5] "PATHOLOGY.M.STAGE"           "GENDER"                     
[7] "KARNOFSKY.PERFORMANCE.SCORE" "NUMBERPACKYEARSSMOKED"      
[9] "YEAROFTOBACCOSMOKINGONSET"  
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 163 columns, 1 survival variables, and 9 non-survival variables.
AGE, nv=49, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=4, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
102  17  43   1 
[1] "table(vv)"
vv
   T1    T2 T3+T4 
  102    17    44 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T1  T2  T3  T4 
102  17  43   1 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


   T1    T2 T3+T4 
  102    17    44 
PATHOLOGY.N.STAGE, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 
27 16  4 
[1] "table(vv)"
vv
N0 N1 N2 
27 16  4 
$ClinVariableName
[1] "PATHOLOGY.N.STAGE"

$Table
vv
N0 N1 N2 
27 16  4 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


N0 N1 N2 
27 16  4 
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=6, binary=FALSE, numeric=TRUE
NUMBERPACKYEARSSMOKED, nv=8, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=6, binary=FALSE, numeric=TRUE

Clustering(1) Variable = AMP PEAK 1(2P23.2) MUTATION ANALYSIS
D1V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 1(2P23.2) MUTATED    24   4
  AMP PEAK 1(2P23.2) WILD-TYPE 109  13
  AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE 
                          28                          122 
  AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE 
                           4                           13 
$`AMP PEAK 1(2P23.2) MUTATED`
TCGA-A4-A5XZ TCGA-A4-A5Y0 TCGA-AL-3466 TCGA-AL-3471 TCGA-B1-7332 TCGA-B3-A6W5 
        0.07         3.88         9.63        13.55         7.33         2.79 
TCGA-B9-4117 TCGA-B9-A44B TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7046 
        0.46         2.10        11.97         7.92         2.76        96.92 
TCGA-DW-5561 TCGA-DZ-6133 TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6795 TCGA-GL-7966 
       13.61        51.19         4.01        51.78        39.25         3.68 
TCGA-GL-A59T TCGA-IA-A40U TCGA-IA-A40Y TCGA-KV-A6GD TCGA-KV-A6GE TCGA-KV-A74V 
        2.99        16.80         2.04         5.26        16.64         5.29 
TCGA-MH-A55W TCGA-P4-A5EB TCGA-PJ-A5Z9 TCGA-Q2-A5QZ 
       13.08        84.95         5.72         1.87 

$`AMP PEAK 1(2P23.2) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 
       18.21         0.69        16.21         0.10        35.18        19.13 
TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 
        0.89         0.23         1.61         0.07         4.60         0.03 
TCGA-A4-8311 TCGA-A4-8515 TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 
        0.07         0.69         0.76         0.03         0.10         0.30 
TCGA-A4-A48D TCGA-A4-A5Y1 TCGA-A4-A6HP TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3472 
        0.03         2.86         0.13        58.45        53.79        30.35 
TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 
       25.08        44.61        19.56        33.83        10.09        30.58 
TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 
       34.49        12.46        50.50        28.18        26.40        20.61 
TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A5W7 TCGA-B9-A5W8 
        1.15        15.12        43.99        22.06         9.14         6.81 
TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 
        0.16         3.35        86.76        19.27         8.88        63.72 
TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 
       22.92        43.20        47.80        21.63        40.83        26.04 
TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 
       30.28        26.04        25.35        13.25        10.88         7.66 
TCGA-BQ-5891 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 
        0.95       123.62        48.26        93.34        44.84        61.28 
TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 
       50.40        49.84        26.27        20.12        11.28         7.63 
TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-7834 TCGA-DW-7836 
        7.04         7.17         3.81        11.61       129.86        35.93 
TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 
       37.55        24.46        13.78         3.75        14.63         3.02 
TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 
       28.80        79.86        80.88        61.02        54.90        34.19 
TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A4JJ TCGA-F9-A7VF TCGA-G7-6792 TCGA-G7-6793 
       19.00        24.89         3.19         0.23        48.62        11.05 
TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-7502 TCGA-G7-A4TM TCGA-GL-6846 
       34.82        25.15        14.66        25.84         9.17       194.79 
TCGA-GL-7773 TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R TCGA-IA-A40X TCGA-IZ-8195 
       12.92         7.76         1.05         5.85        14.14        22.26 
TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-J7-8537 TCGA-MH-A55Z TCGA-MH-A560 
       21.34         4.80         0.07         0.13        12.85        17.85 
TCGA-MH-A561 TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EA 
       14.40         9.60         4.87        99.78        87.22         6.61 
TCGA-P4-A5ED TCGA-PJ-A5Z8 
       92.58         3.72 

  AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE 
                        0.07                         0.03 
  AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE 
                       96.92                       194.79 
  AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE 
                       6.525                       18.030 
[1] "0.1 - 96.9 (6.5)"   "0.0 - 194.8 (18.0)"
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-7997 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-8098                   TCGA-A4-8310 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-8311                   TCGA-A4-8515 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-8516                   TCGA-A4-8517 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-8518                   TCGA-A4-8630 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-A48D                   TCGA-A4-A5XZ 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-A4-A5Y0                   TCGA-A4-A5Y1 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-A6HP                   TCGA-AL-3466 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-AL-3467                   TCGA-AL-3468 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-AL-3471                   TCGA-AL-3472 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-AL-3473                   TCGA-AL-7173 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B1-5398                   TCGA-B1-7332 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-B3-3925                   TCGA-B3-3926 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B3-4103                   TCGA-B3-4104 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B3-8121                   TCGA-B3-A6W5 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B9-5155                   TCGA-B9-5156 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B9-7268                   TCGA-B9-A44B 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-B9-A5W7                   TCGA-B9-A5W8 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B9-A5W9                   TCGA-B9-A69E 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5875                   TCGA-BQ-5876 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5877                   TCGA-BQ-5878 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5879                   TCGA-BQ-5880 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5881                   TCGA-BQ-5882 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5883                   TCGA-BQ-5884 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5885                   TCGA-BQ-5886 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5887                   TCGA-BQ-5888 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5889                   TCGA-BQ-5890 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5891                   TCGA-BQ-5892 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-BQ-5893                   TCGA-BQ-5894 
  "AMP PEAK 1(2P23.2) MUTATED"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-BQ-7044                   TCGA-BQ-7045 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7046                   TCGA-BQ-7048 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7049                   TCGA-BQ-7050 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7051                   TCGA-BQ-7053 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7055                   TCGA-BQ-7056 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7058                   TCGA-BQ-7059 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7060                   TCGA-BQ-7061 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7062                   TCGA-DW-5560 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DW-5561                   TCGA-DW-7834 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DW-7836                   TCGA-DW-7837 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DW-7838                   TCGA-DW-7839 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DW-7840                   TCGA-DW-7841 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DW-7842                   TCGA-DW-7963 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-F9-A4JJ                   TCGA-F9-A7VF 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
  "AMP PEAK 1(2P23.2) MUTATED"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-G7-A4TM 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-GL-6846                   TCGA-GL-7773 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-GL-7966                   TCGA-GL-8500 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-GL-A4EM                   TCGA-GL-A59R 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-GL-A59T                   TCGA-IA-A40U 
  "AMP PEAK 1(2P23.2) MUTATED"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-IA-A40X                   TCGA-IA-A40Y 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-IZ-8195                   TCGA-IZ-8196 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-IZ-A6M8                   TCGA-IZ-A6M9 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-J7-8537                   TCGA-KV-A6GD 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-KV-A6GE                   TCGA-KV-A74V 
  "AMP PEAK 1(2P23.2) MUTATED"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-MH-A55W                   TCGA-MH-A55Z 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-MH-A560                   TCGA-MH-A561 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-MH-A562                   TCGA-O9-A75Z 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-P4-A5E6                   TCGA-P4-A5E7 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-P4-A5EA                   TCGA-P4-A5EB 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-P4-A5ED                   TCGA-PJ-A5Z8 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-PJ-A5Z9                   TCGA-Q2-A5QZ 
  "AMP PEAK 1(2P23.2) MUTATED"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-7997 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-8098                   TCGA-A4-8310 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-8311                   TCGA-A4-8515 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-8516                   TCGA-A4-8517 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-8518                   TCGA-A4-8630 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-A48D                   TCGA-A4-A5XZ 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-A4-A5Y0                   TCGA-A4-A5Y1 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-A6HP                   TCGA-AL-3466 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-AL-3467                   TCGA-AL-3468 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-AL-3471                   TCGA-AL-3472 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-AL-3473                   TCGA-AL-7173 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B1-5398                   TCGA-B1-7332 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-B3-3925                   TCGA-B3-3926 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B3-4103                   TCGA-B3-4104 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B3-8121                   TCGA-B3-A6W5 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B9-5155                   TCGA-B9-5156 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B9-7268                   TCGA-B9-A44B 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-B9-A5W7                   TCGA-B9-A5W8 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B9-A5W9                   TCGA-B9-A69E 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5875                   TCGA-BQ-5876 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5877                   TCGA-BQ-5878 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5879                   TCGA-BQ-5880 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5881                   TCGA-BQ-5882 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5883                   TCGA-BQ-5884 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5885                   TCGA-BQ-5886 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5887                   TCGA-BQ-5888 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5889                   TCGA-BQ-5890 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5891                   TCGA-BQ-5892 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-BQ-5893                   TCGA-BQ-5894 
  "AMP PEAK 1(2P23.2) MUTATED"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-BQ-7044                   TCGA-BQ-7045 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7046                   TCGA-BQ-7048 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7049                   TCGA-BQ-7050 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7051                   TCGA-BQ-7053 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7055                   TCGA-BQ-7056 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7058                   TCGA-BQ-7059 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7060                   TCGA-BQ-7061 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7062                   TCGA-DW-5560 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DW-5561                   TCGA-DW-7834 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DW-7836                   TCGA-DW-7837 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DW-7838                   TCGA-DW-7839 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DW-7840                   TCGA-DW-7841 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DW-7842                   TCGA-DW-7963 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-F9-A4JJ                   TCGA-F9-A7VF 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
  "AMP PEAK 1(2P23.2) MUTATED"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-G7-A4TM 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-GL-6846                   TCGA-GL-7773 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-GL-7966                   TCGA-GL-8500 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-GL-A4EM                   TCGA-GL-A59R 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-GL-A59T                   TCGA-IA-A40U 
  "AMP PEAK 1(2P23.2) MUTATED"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-IA-A40X                   TCGA-IA-A40Y 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-IZ-8195                   TCGA-IZ-8196 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-IZ-A6M8                   TCGA-IZ-A6M9 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-J7-8537                   TCGA-KV-A6GD 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-KV-A6GE                   TCGA-KV-A74V 
  "AMP PEAK 1(2P23.2) MUTATED"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-MH-A55W                   TCGA-MH-A55Z 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-MH-A560                   TCGA-MH-A561 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-MH-A562                   TCGA-O9-A75Z 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-P4-A5E6                   TCGA-P4-A5E7 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-P4-A5EA                   TCGA-P4-A5EB 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-P4-A5ED                   TCGA-PJ-A5Z8 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-PJ-A5Z9                   TCGA-Q2-A5QZ 
  "AMP PEAK 1(2P23.2) MUTATED"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-7997 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-8098                   TCGA-A4-8310 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-8311                   TCGA-A4-8515 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-8516                   TCGA-A4-8517 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-8518                   TCGA-A4-8630 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-A48D                   TCGA-A4-A5XZ 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-A4-A5Y0                   TCGA-A4-A5Y1 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-A4-A6HP                   TCGA-AL-3466 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-AL-3467                   TCGA-AL-3468 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-AL-3471                   TCGA-AL-3472 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-AL-3473                   TCGA-AL-7173 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B1-5398                   TCGA-B1-7332 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-B3-3925                   TCGA-B3-3926 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B3-4103                   TCGA-B3-4104 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B3-8121                   TCGA-B3-A6W5 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B9-5155                   TCGA-B9-5156 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B9-7268                   TCGA-B9-A44B 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-B9-A5W7                   TCGA-B9-A5W8 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-B9-A5W9                   TCGA-B9-A69E 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5875                   TCGA-BQ-5876 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5877                   TCGA-BQ-5878 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5879                   TCGA-BQ-5880 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5881                   TCGA-BQ-5882 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5883                   TCGA-BQ-5884 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5885                   TCGA-BQ-5886 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5887                   TCGA-BQ-5888 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5889                   TCGA-BQ-5890 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-5891                   TCGA-BQ-5892 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-BQ-5893                   TCGA-BQ-5894 
  "AMP PEAK 1(2P23.2) MUTATED"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-BQ-7044                   TCGA-BQ-7045 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7046                   TCGA-BQ-7048 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7049                   TCGA-BQ-7050 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7051                   TCGA-BQ-7053 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7055                   TCGA-BQ-7056 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7058                   TCGA-BQ-7059 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7060                   TCGA-BQ-7061 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-BQ-7062                   TCGA-DW-5560 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DW-5561                   TCGA-DW-7834 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DW-7836                   TCGA-DW-7837 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DW-7838                   TCGA-DW-7839 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DW-7840                   TCGA-DW-7841 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DW-7842                   TCGA-DW-7963 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-F9-A4JJ                   TCGA-F9-A7VF 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
  "AMP PEAK 1(2P23.2) MUTATED"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-G7-A4TM 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-GL-6846                   TCGA-GL-7773 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-GL-7966                   TCGA-GL-8500 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-GL-A4EM                   TCGA-GL-A59R 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-GL-A59T                   TCGA-IA-A40U 
  "AMP PEAK 1(2P23.2) MUTATED"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-IA-A40X                   TCGA-IA-A40Y 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-IZ-8195                   TCGA-IZ-8196 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-IZ-A6M8                   TCGA-IZ-A6M9 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-J7-8537                   TCGA-KV-A6GD 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-KV-A6GE                   TCGA-KV-A74V 
  "AMP PEAK 1(2P23.2) MUTATED"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-MH-A55W                   TCGA-MH-A55Z 
  "AMP PEAK 1(2P23.2) MUTATED" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-MH-A560                   TCGA-MH-A561 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-MH-A562                   TCGA-O9-A75Z 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-P4-A5E6                   TCGA-P4-A5E7 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-P4-A5EA                   TCGA-P4-A5EB 
"AMP PEAK 1(2P23.2) WILD-TYPE"   "AMP PEAK 1(2P23.2) MUTATED" 
                  TCGA-P4-A5ED                   TCGA-PJ-A5Z8 
"AMP PEAK 1(2P23.2) WILD-TYPE" "AMP PEAK 1(2P23.2) WILD-TYPE" 
                  TCGA-PJ-A5Z9                   TCGA-Q2-A5QZ 
  "AMP PEAK 1(2P23.2) MUTATED"   "AMP PEAK 1(2P23.2) MUTATED" 
[1] "hr=" "1.9"
D1V2, continuous
                              vv
clus                           STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 1(2P23.2) MUTATED        19        2         6        4
  AMP PEAK 1(2P23.2) WILD-TYPE      76        9        31        6
D1V3, multiclass
           clus
vv          AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  STAGE I                           19                           76
  STAGE II                           2                            9
  STAGE III                          6                           31
  STAGE IV                           4                            6
                              vv
clus                           T1 T2 T3+T4
  AMP PEAK 1(2P23.2) MUTATED   19  3    10
  AMP PEAK 1(2P23.2) WILD-TYPE 83 14    34
D1V4, multiclass
       clus
vv      AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  T1                            19                           83
  T2                             3                           14
  T3+T4                         10                           34
                              vv
clus                           N0 N1 N2
  AMP PEAK 1(2P23.2) MUTATED    4  5  1
  AMP PEAK 1(2P23.2) WILD-TYPE 23 11  3
D1V5, multiclass
    clus
vv   AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  N0                          4                           23
  N1                          5                           11
  N2                          1                            3
                              vv
clus                           M0 M1 MX
  AMP PEAK 1(2P23.2) MUTATED    7  3 19
  AMP PEAK 1(2P23.2) WILD-TYPE 55  3 63
D1V6, multiclass
    clus
vv   AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  M0                          7                           55
  M1                          3                            3
  MX                         19                           63
D1V7, binary
                              cls
clus                            0  1
  AMP PEAK 1(2P23.2) MUTATED   13 19
  AMP PEAK 1(2P23.2) WILD-TYPE 36 95
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 1(2P23.2) MUTATED     13   19
  AMP PEAK 1(2P23.2) WILD-TYPE   36   95
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  FEMALE                         13                           36
  MALE                           19                           95
D1V8, continuous
D1V9, continuous
D1V10, continuous

Clustering(2) Variable = AMP PEAK 2(2Q32.1) MUTATION ANALYSIS
D2V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 2(2Q32.1) MUTATED    30   5
  AMP PEAK 2(2Q32.1) WILD-TYPE 103  12
  AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE 
                          35                          115 
  AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE 
                           5                           12 
$`AMP PEAK 2(2Q32.1) MUTATED`
TCGA-A4-7585 TCGA-A4-A5XZ TCGA-A4-A5Y0 TCGA-AL-3466 TCGA-AL-3471 TCGA-AL-7173 
       35.18         0.07         3.88         9.63        13.55        44.61 
TCGA-B1-7332 TCGA-B3-A6W5 TCGA-B9-4117 TCGA-B9-A44B TCGA-B9-A69E TCGA-BQ-5878 
        7.33         2.79         0.46         2.10         3.35        63.72 
TCGA-BQ-5885 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7046 TCGA-DW-5561 
       30.28        11.97         7.92         2.76        96.92        13.61 
TCGA-DZ-6131 TCGA-DZ-6133 TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6795 TCGA-G7-7502 
       79.86        51.19         4.01        51.78        39.25        25.84 
TCGA-GL-7966 TCGA-GL-A59T TCGA-IA-A40U TCGA-IA-A40Y TCGA-KV-A6GD TCGA-KV-A6GE 
        3.68         2.99        16.80         2.04         5.26        16.64 
TCGA-KV-A74V TCGA-MH-A55W TCGA-P4-A5EB TCGA-PJ-A5Z9 TCGA-Q2-A5QZ 
        5.29        13.08        84.95         5.72         1.87 

$`AMP PEAK 2(2Q32.1) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7732 TCGA-A4-7734 
       18.21         0.69        16.21         0.10        19.13         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 
        0.23         1.61         0.07         4.60         0.03         0.07 
TCGA-A4-8515 TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D 
        0.69         0.76         0.03         0.10         0.30         0.03 
TCGA-A4-A5Y1 TCGA-A4-A6HP TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3472 TCGA-AL-3473 
        2.86         0.13        58.45        53.79        30.35        25.08 
TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 
       19.56        33.83        10.09        30.58        34.49        12.46 
TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4617 TCGA-B9-5155 
       50.50        28.18        26.40        20.61         1.15        15.12 
TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 TCGA-BQ-5875 
       43.99        22.06         9.14         6.81         0.16        86.76 
TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 
       19.27         8.88        22.92        43.20        47.80        21.63 
TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 
       40.83        26.04        26.04        25.35        13.25        10.88 
TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7048 TCGA-BQ-7049 
        7.66         0.95       123.62        48.26        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 
       61.28        50.40        49.84        26.27        20.12        11.28 
TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-7834 
        7.63         7.04         7.17         3.81        11.61       129.86 
TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 
       35.93        37.55        24.46        13.78         3.75        14.63 
TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6132 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 
        3.02        28.80        80.88        61.02        54.90        34.19 
TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A4JJ TCGA-F9-A7VF TCGA-G7-6792 TCGA-G7-6793 
       19.00        24.89         3.19         0.23        48.62        11.05 
TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 
       34.82        25.15        14.66         9.17       194.79        12.92 
TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R TCGA-IA-A40X TCGA-IZ-8195 TCGA-IZ-8196 
        7.76         1.05         5.85        14.14        22.26        21.34 
TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-J7-8537 TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 
        4.80         0.07         0.13        12.85        17.85        14.40 
TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EA TCGA-P4-A5ED 
        9.60         4.87        99.78        87.22         6.61        92.58 
TCGA-PJ-A5Z8 
        3.72 

  AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE 
                        0.07                         0.03 
  AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE 
                       96.92                       194.79 
  AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE 
                        9.63                        15.12 
[1] "0.1 - 96.9 (9.6)"   "0.0 - 194.8 (15.1)"
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-7997 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-8098                   TCGA-A4-8310 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-8311                   TCGA-A4-8515 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-8516                   TCGA-A4-8517 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-8518                   TCGA-A4-8630 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-A48D                   TCGA-A4-A5XZ 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-A4-A5Y0                   TCGA-A4-A5Y1 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-A6HP                   TCGA-AL-3466 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-AL-3467                   TCGA-AL-3468 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-AL-3471                   TCGA-AL-3472 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-AL-3473                   TCGA-AL-7173 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-B1-5398                   TCGA-B1-7332 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-B3-3925                   TCGA-B3-3926 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B3-4103                   TCGA-B3-4104 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B3-8121                   TCGA-B3-A6W5 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B9-5155                   TCGA-B9-5156 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B9-7268                   TCGA-B9-A44B 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-B9-A5W7                   TCGA-B9-A5W8 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B9-A5W9                   TCGA-B9-A69E 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-BQ-5875                   TCGA-BQ-5876 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5877                   TCGA-BQ-5878 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-BQ-5879                   TCGA-BQ-5880 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5881                   TCGA-BQ-5882 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5883                   TCGA-BQ-5884 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5885                   TCGA-BQ-5886 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5887                   TCGA-BQ-5888 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5889                   TCGA-BQ-5890 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5891                   TCGA-BQ-5892 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-BQ-5893                   TCGA-BQ-5894 
  "AMP PEAK 2(2Q32.1) MUTATED"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-BQ-7044                   TCGA-BQ-7045 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7046                   TCGA-BQ-7048 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7049                   TCGA-BQ-7050 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7051                   TCGA-BQ-7053 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7055                   TCGA-BQ-7056 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7058                   TCGA-BQ-7059 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7060                   TCGA-BQ-7061 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7062                   TCGA-DW-5560 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DW-5561                   TCGA-DW-7834 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7836                   TCGA-DW-7837 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7838                   TCGA-DW-7839 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7840                   TCGA-DW-7841 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7842                   TCGA-DW-7963 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-F9-A4JJ                   TCGA-F9-A7VF 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
  "AMP PEAK 2(2Q32.1) MUTATED"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-G7-A4TM 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-GL-6846                   TCGA-GL-7773 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-GL-7966                   TCGA-GL-8500 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-GL-A4EM                   TCGA-GL-A59R 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-GL-A59T                   TCGA-IA-A40U 
  "AMP PEAK 2(2Q32.1) MUTATED"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-IA-A40X                   TCGA-IA-A40Y 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-IZ-8195                   TCGA-IZ-8196 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-IZ-A6M8                   TCGA-IZ-A6M9 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-J7-8537                   TCGA-KV-A6GD 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-KV-A6GE                   TCGA-KV-A74V 
  "AMP PEAK 2(2Q32.1) MUTATED"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-MH-A55W                   TCGA-MH-A55Z 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-MH-A560                   TCGA-MH-A561 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-MH-A562                   TCGA-O9-A75Z 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-P4-A5E6                   TCGA-P4-A5E7 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-P4-A5EA                   TCGA-P4-A5EB 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-P4-A5ED                   TCGA-PJ-A5Z8 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-PJ-A5Z9                   TCGA-Q2-A5QZ 
  "AMP PEAK 2(2Q32.1) MUTATED"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-7997 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-8098                   TCGA-A4-8310 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-8311                   TCGA-A4-8515 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-8516                   TCGA-A4-8517 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-8518                   TCGA-A4-8630 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-A48D                   TCGA-A4-A5XZ 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-A4-A5Y0                   TCGA-A4-A5Y1 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-A6HP                   TCGA-AL-3466 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-AL-3467                   TCGA-AL-3468 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-AL-3471                   TCGA-AL-3472 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-AL-3473                   TCGA-AL-7173 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-B1-5398                   TCGA-B1-7332 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-B3-3925                   TCGA-B3-3926 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B3-4103                   TCGA-B3-4104 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B3-8121                   TCGA-B3-A6W5 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B9-5155                   TCGA-B9-5156 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B9-7268                   TCGA-B9-A44B 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-B9-A5W7                   TCGA-B9-A5W8 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B9-A5W9                   TCGA-B9-A69E 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-BQ-5875                   TCGA-BQ-5876 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5877                   TCGA-BQ-5878 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-BQ-5879                   TCGA-BQ-5880 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5881                   TCGA-BQ-5882 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5883                   TCGA-BQ-5884 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5885                   TCGA-BQ-5886 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5887                   TCGA-BQ-5888 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5889                   TCGA-BQ-5890 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5891                   TCGA-BQ-5892 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-BQ-5893                   TCGA-BQ-5894 
  "AMP PEAK 2(2Q32.1) MUTATED"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-BQ-7044                   TCGA-BQ-7045 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7046                   TCGA-BQ-7048 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7049                   TCGA-BQ-7050 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7051                   TCGA-BQ-7053 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7055                   TCGA-BQ-7056 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7058                   TCGA-BQ-7059 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7060                   TCGA-BQ-7061 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7062                   TCGA-DW-5560 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DW-5561                   TCGA-DW-7834 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7836                   TCGA-DW-7837 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7838                   TCGA-DW-7839 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7840                   TCGA-DW-7841 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7842                   TCGA-DW-7963 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-F9-A4JJ                   TCGA-F9-A7VF 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
  "AMP PEAK 2(2Q32.1) MUTATED"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-G7-A4TM 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-GL-6846                   TCGA-GL-7773 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-GL-7966                   TCGA-GL-8500 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-GL-A4EM                   TCGA-GL-A59R 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-GL-A59T                   TCGA-IA-A40U 
  "AMP PEAK 2(2Q32.1) MUTATED"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-IA-A40X                   TCGA-IA-A40Y 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-IZ-8195                   TCGA-IZ-8196 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-IZ-A6M8                   TCGA-IZ-A6M9 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-J7-8537                   TCGA-KV-A6GD 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-KV-A6GE                   TCGA-KV-A74V 
  "AMP PEAK 2(2Q32.1) MUTATED"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-MH-A55W                   TCGA-MH-A55Z 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-MH-A560                   TCGA-MH-A561 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-MH-A562                   TCGA-O9-A75Z 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-P4-A5E6                   TCGA-P4-A5E7 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-P4-A5EA                   TCGA-P4-A5EB 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-P4-A5ED                   TCGA-PJ-A5Z8 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-PJ-A5Z9                   TCGA-Q2-A5QZ 
  "AMP PEAK 2(2Q32.1) MUTATED"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-7997 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-8098                   TCGA-A4-8310 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-8311                   TCGA-A4-8515 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-8516                   TCGA-A4-8517 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-8518                   TCGA-A4-8630 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-A48D                   TCGA-A4-A5XZ 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-A4-A5Y0                   TCGA-A4-A5Y1 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-A4-A6HP                   TCGA-AL-3466 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-AL-3467                   TCGA-AL-3468 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-AL-3471                   TCGA-AL-3472 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-AL-3473                   TCGA-AL-7173 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-B1-5398                   TCGA-B1-7332 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-B3-3925                   TCGA-B3-3926 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B3-4103                   TCGA-B3-4104 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B3-8121                   TCGA-B3-A6W5 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B9-5155                   TCGA-B9-5156 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B9-7268                   TCGA-B9-A44B 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-B9-A5W7                   TCGA-B9-A5W8 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-B9-A5W9                   TCGA-B9-A69E 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-BQ-5875                   TCGA-BQ-5876 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5877                   TCGA-BQ-5878 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-BQ-5879                   TCGA-BQ-5880 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5881                   TCGA-BQ-5882 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5883                   TCGA-BQ-5884 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5885                   TCGA-BQ-5886 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5887                   TCGA-BQ-5888 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5889                   TCGA-BQ-5890 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-5891                   TCGA-BQ-5892 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-BQ-5893                   TCGA-BQ-5894 
  "AMP PEAK 2(2Q32.1) MUTATED"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-BQ-7044                   TCGA-BQ-7045 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7046                   TCGA-BQ-7048 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7049                   TCGA-BQ-7050 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7051                   TCGA-BQ-7053 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7055                   TCGA-BQ-7056 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7058                   TCGA-BQ-7059 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7060                   TCGA-BQ-7061 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-BQ-7062                   TCGA-DW-5560 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DW-5561                   TCGA-DW-7834 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7836                   TCGA-DW-7837 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7838                   TCGA-DW-7839 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7840                   TCGA-DW-7841 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DW-7842                   TCGA-DW-7963 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-F9-A4JJ                   TCGA-F9-A7VF 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-G7-6789                   TCGA-G7-6790 
  "AMP PEAK 2(2Q32.1) MUTATED"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-G7-A4TM 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-GL-6846                   TCGA-GL-7773 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-GL-7966                   TCGA-GL-8500 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-GL-A4EM                   TCGA-GL-A59R 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-GL-A59T                   TCGA-IA-A40U 
  "AMP PEAK 2(2Q32.1) MUTATED"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-IA-A40X                   TCGA-IA-A40Y 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-IZ-8195                   TCGA-IZ-8196 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-IZ-A6M8                   TCGA-IZ-A6M9 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-J7-8537                   TCGA-KV-A6GD 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-KV-A6GE                   TCGA-KV-A74V 
  "AMP PEAK 2(2Q32.1) MUTATED"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-MH-A55W                   TCGA-MH-A55Z 
  "AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-MH-A560                   TCGA-MH-A561 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-MH-A562                   TCGA-O9-A75Z 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-P4-A5E6                   TCGA-P4-A5E7 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-P4-A5EA                   TCGA-P4-A5EB 
"AMP PEAK 2(2Q32.1) WILD-TYPE"   "AMP PEAK 2(2Q32.1) MUTATED" 
                  TCGA-P4-A5ED                   TCGA-PJ-A5Z8 
"AMP PEAK 2(2Q32.1) WILD-TYPE" "AMP PEAK 2(2Q32.1) WILD-TYPE" 
                  TCGA-PJ-A5Z9                   TCGA-Q2-A5QZ 
  "AMP PEAK 2(2Q32.1) MUTATED"   "AMP PEAK 2(2Q32.1) MUTATED" 
[1] "hr=" "1.5"
D2V2, continuous
                              vv
clus                           STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 2(2Q32.1) MUTATED        20        2        10        6
  AMP PEAK 2(2Q32.1) WILD-TYPE      75        9        27        4
D2V3, multiclass
           clus
vv          AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  STAGE I                           20                           75
  STAGE II                           2                            9
  STAGE III                         10                           27
  STAGE IV                           6                            4
                              vv
clus                           T1 T2 T3+T4
  AMP PEAK 2(2Q32.1) MUTATED   20  4    15
  AMP PEAK 2(2Q32.1) WILD-TYPE 82 13    29
D2V4, multiclass
       clus
vv      AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  T1                            20                           82
  T2                             4                           13
  T3+T4                         15                           29
                              vv
clus                           N0 N1 N2
  AMP PEAK 2(2Q32.1) MUTATED    8  6  2
  AMP PEAK 2(2Q32.1) WILD-TYPE 19 10  2
D2V5, multiclass
    clus
vv   AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  N0                          8                           19
  N1                          6                           10
  N2                          2                            2
                              vv
clus                           M0 M1 MX
  AMP PEAK 2(2Q32.1) MUTATED   10  4 21
  AMP PEAK 2(2Q32.1) WILD-TYPE 52  2 61
D2V6, multiclass
    clus
vv   AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  M0                         10                           52
  M1                          4                            2
  MX                         21                           61
D2V7, binary
                              cls
clus                            0  1
  AMP PEAK 2(2Q32.1) MUTATED   14 25
  AMP PEAK 2(2Q32.1) WILD-TYPE 35 89
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 2(2Q32.1) MUTATED     14   25
  AMP PEAK 2(2Q32.1) WILD-TYPE   35   89
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  FEMALE                         14                           35
  MALE                           25                           89
D2V8, continuous
D2V9, continuous
[1] "Remove cluster labels:"       "AMP PEAK 2(2Q32.1) WILD-TYPE"
clus
  AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE 
                           7                            2 
                TCGA-B9-A44B                 TCGA-B9-A69E 
"AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) MUTATED" 
                TCGA-GL-A59T                 TCGA-IA-A40U 
"AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) MUTATED" 
                TCGA-P4-A5EB                 TCGA-PJ-A5Z9 
"AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) MUTATED" 
                TCGA-Q2-A5QZ 
"AMP PEAK 2(2Q32.1) MUTATED" 
D2V10, continuous
[1] "Remove cluster labels:"       "AMP PEAK 2(2Q32.1) WILD-TYPE"
clus
  AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE 
                           4                            2 
                TCGA-B9-A69E                 TCGA-IA-A40U 
"AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) MUTATED" 
                TCGA-PJ-A5Z9                 TCGA-Q2-A5QZ 
"AMP PEAK 2(2Q32.1) MUTATED" "AMP PEAK 2(2Q32.1) MUTATED" 

Clustering(3) Variable = AMP PEAK 3(3Q22.3) MUTATION ANALYSIS
D3V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 3(3Q22.3) MUTATED   44  4
  AMP PEAK 3(3Q22.3) WILD-TYPE 89 13
  AMP PEAK 3(3Q22.3) MUTATED AMP PEAK 3(3Q22.3) WILD-TYPE 
                          48                          102 
  AMP PEAK 3(3Q22.3) MUTATED AMP PEAK 3(3Q22.3) WILD-TYPE 
                           4                           13 
$`AMP PEAK 3(3Q22.3) MUTATED`
TCGA-A4-7287 TCGA-A4-7997 TCGA-A4-8311 TCGA-A4-8515 TCGA-A4-8516 TCGA-A4-8518 
        0.69         0.07         0.07         0.69         0.76         0.10 
TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A5XZ TCGA-AL-3468 TCGA-AL-3471 TCGA-B1-7332 
        0.30         0.03         0.07        53.79        13.55         7.33 
TCGA-B3-4103 TCGA-B3-A6W5 TCGA-B9-4114 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 
       30.58         2.79        28.18         0.46         1.15        15.12 
TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A44B TCGA-BQ-5881 TCGA-BQ-5886 TCGA-BQ-5890 
       43.99        22.06         2.10        47.80        26.04         7.66 
TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7060 TCGA-BQ-7062 TCGA-DW-7836 TCGA-DW-7837 
       48.26        96.92         7.04         3.81        35.93        37.55 
TCGA-DW-7838 TCGA-DW-7963 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6135 TCGA-EV-5901 
       24.46        28.80        80.88        51.19        54.90        34.19 
TCGA-F9-A7VF TCGA-G7-6790 TCGA-G7-6793 TCGA-GL-6846 TCGA-GL-A59T TCGA-KV-A6GD 
        0.23        51.78        11.05       194.79         2.99         5.26 
TCGA-KV-A6GE TCGA-KV-A74V TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EA TCGA-PJ-A5Z9 
       16.64         5.29        99.78        87.22         6.61         5.72 

$`AMP PEAK 3(3Q22.3) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 
       18.21        16.21         0.10        35.18        19.13         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8517 TCGA-A4-A5Y0 
        0.23         1.61         4.60         0.03         0.03         3.88 
TCGA-A4-A5Y1 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3472 TCGA-AL-3473 
        2.86         0.13         9.63        58.45        30.35        25.08 
TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4104 TCGA-B3-8121 
       44.61        19.56        33.83        10.09        34.49        12.46 
TCGA-B9-4113 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 
       50.50        26.40        20.61         9.14         6.81         0.16 
TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 
        3.35        86.76        19.27         8.88        63.72        22.92 
TCGA-BQ-5880 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5887 
       43.20        21.63        40.83        26.04        30.28        25.35 
TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 
       13.25        10.88         0.95        11.97         7.92         2.76 
TCGA-BQ-7044 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 
      123.62        93.34        44.84        61.28        50.40        49.84 
TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7061 TCGA-DW-5560 
       26.27        20.12        11.28         7.63         7.17        11.61 
TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 
       13.61       129.86        13.78         3.75        14.63         3.02 
TCGA-DZ-6131 TCGA-DZ-6134 TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A4JJ TCGA-G7-6789 
       79.86        61.02        19.00        24.89         3.19         4.01 
TCGA-G7-6792 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-7502 
       48.62        39.25        34.82        25.15        14.66        25.84 
TCGA-G7-A4TM TCGA-GL-7773 TCGA-GL-7966 TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R 
        9.17        12.92         3.68         7.76         1.05         5.85 
TCGA-IA-A40U TCGA-IA-A40X TCGA-IA-A40Y TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 
       16.80        14.14         2.04        22.26        21.34         4.80 
TCGA-IZ-A6M9 TCGA-J7-8537 TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 
        0.07         0.13        13.08        12.85        17.85        14.40 
TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5EB TCGA-P4-A5ED TCGA-PJ-A5Z8 TCGA-Q2-A5QZ 
        9.60         4.87        84.95        92.58         3.72         1.87 

  AMP PEAK 3(3Q22.3) MUTATED AMP PEAK 3(3Q22.3) WILD-TYPE 
                        0.03                         0.03 
  AMP PEAK 3(3Q22.3) MUTATED AMP PEAK 3(3Q22.3) WILD-TYPE 
                      194.79                       129.86 
  AMP PEAK 3(3Q22.3) MUTATED AMP PEAK 3(3Q22.3) WILD-TYPE 
                       12.30                        14.27 
[1] "0.0 - 194.8 (12.3)" "0.0 - 129.9 (14.3)"
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-7997 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-A4-8098                   TCGA-A4-8310 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-8311                   TCGA-A4-8515 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-A4-8516                   TCGA-A4-8517 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-8518                   TCGA-A4-8630 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-A4-A48D                   TCGA-A4-A5XZ 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-A4-A5Y0                   TCGA-A4-A5Y1 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-A6HP                   TCGA-AL-3466 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-AL-3467                   TCGA-AL-3468 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-AL-3471                   TCGA-AL-3472 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-AL-3473                   TCGA-AL-7173 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-B1-5398                   TCGA-B1-7332 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-B3-3925                   TCGA-B3-3926 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-B3-4103                   TCGA-B3-4104 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-B3-8121                   TCGA-B3-A6W5 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-B9-5155                   TCGA-B9-5156 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-B9-7268                   TCGA-B9-A44B 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-B9-A5W7                   TCGA-B9-A5W8 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-B9-A5W9                   TCGA-B9-A69E 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5875                   TCGA-BQ-5876 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5877                   TCGA-BQ-5878 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5879                   TCGA-BQ-5880 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5881                   TCGA-BQ-5882 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5883                   TCGA-BQ-5884 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5885                   TCGA-BQ-5886 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-BQ-5887                   TCGA-BQ-5888 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5889                   TCGA-BQ-5890 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-BQ-5891                   TCGA-BQ-5892 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5893                   TCGA-BQ-5894 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7044                   TCGA-BQ-7045 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-BQ-7046                   TCGA-BQ-7048 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7049                   TCGA-BQ-7050 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7051                   TCGA-BQ-7053 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7055                   TCGA-BQ-7056 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7058                   TCGA-BQ-7059 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7060                   TCGA-BQ-7061 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7062                   TCGA-DW-5560 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-DW-5561                   TCGA-DW-7834 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-DW-7836                   TCGA-DW-7837 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-DW-7838                   TCGA-DW-7839 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-DW-7840                   TCGA-DW-7841 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-DW-7842                   TCGA-DW-7963 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-F9-A4JJ                   TCGA-F9-A7VF 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-G7-6789                   TCGA-G7-6790 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-G7-6795                   TCGA-G7-6796 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-G7-A4TM 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-GL-6846                   TCGA-GL-7773 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-GL-7966                   TCGA-GL-8500 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-GL-A4EM                   TCGA-GL-A59R 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-GL-A59T                   TCGA-IA-A40U 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-IA-A40X                   TCGA-IA-A40Y 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-IZ-8195                   TCGA-IZ-8196 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-IZ-A6M8                   TCGA-IZ-A6M9 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-J7-8537                   TCGA-KV-A6GD 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-KV-A6GE                   TCGA-KV-A74V 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-MH-A55W                   TCGA-MH-A55Z 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-MH-A560                   TCGA-MH-A561 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-MH-A562                   TCGA-O9-A75Z 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-P4-A5E6                   TCGA-P4-A5E7 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-P4-A5EA                   TCGA-P4-A5EB 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-P4-A5ED                   TCGA-PJ-A5Z8 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-PJ-A5Z9                   TCGA-Q2-A5QZ 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-7997 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-A4-8098                   TCGA-A4-8310 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-8311                   TCGA-A4-8515 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-A4-8516                   TCGA-A4-8517 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-8518                   TCGA-A4-8630 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-A4-A48D                   TCGA-A4-A5XZ 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-A4-A5Y0                   TCGA-A4-A5Y1 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-A6HP                   TCGA-AL-3466 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-AL-3467                   TCGA-AL-3468 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-AL-3471                   TCGA-AL-3472 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-AL-3473                   TCGA-AL-7173 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-B1-5398                   TCGA-B1-7332 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-B3-3925                   TCGA-B3-3926 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-B3-4103                   TCGA-B3-4104 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-B3-8121                   TCGA-B3-A6W5 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-B9-5155                   TCGA-B9-5156 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-B9-7268                   TCGA-B9-A44B 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-B9-A5W7                   TCGA-B9-A5W8 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-B9-A5W9                   TCGA-B9-A69E 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5875                   TCGA-BQ-5876 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5877                   TCGA-BQ-5878 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5879                   TCGA-BQ-5880 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5881                   TCGA-BQ-5882 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5883                   TCGA-BQ-5884 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5885                   TCGA-BQ-5886 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-BQ-5887                   TCGA-BQ-5888 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5889                   TCGA-BQ-5890 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-BQ-5891                   TCGA-BQ-5892 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5893                   TCGA-BQ-5894 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7044                   TCGA-BQ-7045 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-BQ-7046                   TCGA-BQ-7048 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7049                   TCGA-BQ-7050 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7051                   TCGA-BQ-7053 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7055                   TCGA-BQ-7056 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7058                   TCGA-BQ-7059 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7060                   TCGA-BQ-7061 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7062                   TCGA-DW-5560 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-DW-5561                   TCGA-DW-7834 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-DW-7836                   TCGA-DW-7837 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-DW-7838                   TCGA-DW-7839 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-DW-7840                   TCGA-DW-7841 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-DW-7842                   TCGA-DW-7963 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-F9-A4JJ                   TCGA-F9-A7VF 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-G7-6789                   TCGA-G7-6790 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-G7-6795                   TCGA-G7-6796 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-G7-A4TM 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-GL-6846                   TCGA-GL-7773 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-GL-7966                   TCGA-GL-8500 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-GL-A4EM                   TCGA-GL-A59R 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-GL-A59T                   TCGA-IA-A40U 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-IA-A40X                   TCGA-IA-A40Y 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-IZ-8195                   TCGA-IZ-8196 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-IZ-A6M8                   TCGA-IZ-A6M9 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-J7-8537                   TCGA-KV-A6GD 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-KV-A6GE                   TCGA-KV-A74V 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-MH-A55W                   TCGA-MH-A55Z 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-MH-A560                   TCGA-MH-A561 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-MH-A562                   TCGA-O9-A75Z 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-P4-A5E6                   TCGA-P4-A5E7 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-P4-A5EA                   TCGA-P4-A5EB 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-P4-A5ED                   TCGA-PJ-A5Z8 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-PJ-A5Z9                   TCGA-Q2-A5QZ 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-A4-7288                   TCGA-A4-7583 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-7734                   TCGA-A4-7915 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-7997 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-A4-8098                   TCGA-A4-8310 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-8311                   TCGA-A4-8515 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-A4-8516                   TCGA-A4-8517 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-8518                   TCGA-A4-8630 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-A4-A48D                   TCGA-A4-A5XZ 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-A4-A5Y0                   TCGA-A4-A5Y1 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-A4-A6HP                   TCGA-AL-3466 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-AL-3467                   TCGA-AL-3468 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-AL-3471                   TCGA-AL-3472 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-AL-3473                   TCGA-AL-7173 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-B1-5398                   TCGA-B1-7332 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-B3-3925                   TCGA-B3-3926 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-B3-4103                   TCGA-B3-4104 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-B3-8121                   TCGA-B3-A6W5 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-B9-4113                   TCGA-B9-4114 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-B9-4115                   TCGA-B9-4116 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-B9-5155                   TCGA-B9-5156 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-B9-7268                   TCGA-B9-A44B 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-B9-A5W7                   TCGA-B9-A5W8 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-B9-A5W9                   TCGA-B9-A69E 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5875                   TCGA-BQ-5876 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5877                   TCGA-BQ-5878 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5879                   TCGA-BQ-5880 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5881                   TCGA-BQ-5882 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5883                   TCGA-BQ-5884 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5885                   TCGA-BQ-5886 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-BQ-5887                   TCGA-BQ-5888 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5889                   TCGA-BQ-5890 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-BQ-5891                   TCGA-BQ-5892 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-5893                   TCGA-BQ-5894 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7044                   TCGA-BQ-7045 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-BQ-7046                   TCGA-BQ-7048 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7049                   TCGA-BQ-7050 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7051                   TCGA-BQ-7053 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7055                   TCGA-BQ-7056 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7058                   TCGA-BQ-7059 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7060                   TCGA-BQ-7061 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-BQ-7062                   TCGA-DW-5560 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-DW-5561                   TCGA-DW-7834 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-DW-7836                   TCGA-DW-7837 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-DW-7838                   TCGA-DW-7839 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-DW-7840                   TCGA-DW-7841 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-DW-7842                   TCGA-DW-7963 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-F9-A4JJ                   TCGA-F9-A7VF 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-G7-6789                   TCGA-G7-6790 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-G7-6795                   TCGA-G7-6796 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-G7-A4TM 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-GL-6846                   TCGA-GL-7773 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-GL-7966                   TCGA-GL-8500 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-GL-A4EM                   TCGA-GL-A59R 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-GL-A59T                   TCGA-IA-A40U 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-IA-A40X                   TCGA-IA-A40Y 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-IZ-8195                   TCGA-IZ-8196 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-IZ-A6M8                   TCGA-IZ-A6M9 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-J7-8537                   TCGA-KV-A6GD 
"AMP PEAK 3(3Q22.3) WILD-TYPE"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-KV-A6GE                   TCGA-KV-A74V 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-MH-A55W                   TCGA-MH-A55Z 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-MH-A560                   TCGA-MH-A561 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-MH-A562                   TCGA-O9-A75Z 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-P4-A5E6                   TCGA-P4-A5E7 
  "AMP PEAK 3(3Q22.3) MUTATED"   "AMP PEAK 3(3Q22.3) MUTATED" 
                  TCGA-P4-A5EA                   TCGA-P4-A5EB 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-P4-A5ED                   TCGA-PJ-A5Z8 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-PJ-A5Z9                   TCGA-Q2-A5QZ 
  "AMP PEAK 3(3Q22.3) MUTATED" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
[1] "hr=" "1.7"
D3V2, continuous
                              vv
clus                           STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 3(3Q22.3) MUTATED        37        4         8        3
  AMP PEAK 3(3Q22.3) WILD-TYPE      58        7        29        7
D3V3, multiclass
           clus
vv          AMP PEAK 3(3Q22.3) MUTATED AMP PEAK 3(3Q22.3) WILD-TYPE
  STAGE I                           37                           58
  STAGE II                           4                            7
  STAGE III                          8                           29
  STAGE IV                           3                            7
                              vv
clus                           T1 T2 T3+T4
  AMP PEAK 3(3Q22.3) MUTATED   39  8     9
  AMP PEAK 3(3Q22.3) WILD-TYPE 63  9    35
D3V4, multiclass
       clus
vv      AMP PEAK 3(3Q22.3) MUTATED AMP PEAK 3(3Q22.3) WILD-TYPE
  T1                            39                           63
  T2                             8                            9
  T3+T4                          9                           35
                              vv
clus                           N0 N1 N2
  AMP PEAK 3(3Q22.3) MUTATED    6  3  1
  AMP PEAK 3(3Q22.3) WILD-TYPE 21 13  3
D3V5, multiclass
    clus
vv   AMP PEAK 3(3Q22.3) MUTATED AMP PEAK 3(3Q22.3) WILD-TYPE
  N0                          6                           21
  N1                          3                           13
  N2                          1                            3
                              vv
clus                           M0 M1 MX
  AMP PEAK 3(3Q22.3) MUTATED   19  1 30
  AMP PEAK 3(3Q22.3) WILD-TYPE 43  5 52
D3V6, multiclass
    clus
vv   AMP PEAK 3(3Q22.3) MUTATED AMP PEAK 3(3Q22.3) WILD-TYPE
  M0                         19                           43
  M1                          1                            5
  MX                         30                           52
D3V7, binary
                              cls
clus                            0  1
  AMP PEAK 3(3Q22.3) MUTATED   15 41
  AMP PEAK 3(3Q22.3) WILD-TYPE 34 73
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 3(3Q22.3) MUTATED     15   41
  AMP PEAK 3(3Q22.3) WILD-TYPE   34   73
        clus
vv       AMP PEAK 3(3Q22.3) MUTATED AMP PEAK 3(3Q22.3) WILD-TYPE
  FEMALE                         15                           34
  MALE                           41                           73
D3V8, continuous
D3V9, continuous
D3V10, continuous
[1] "Remove cluster labels:"     "AMP PEAK 3(3Q22.3) MUTATED"
clus
  AMP PEAK 3(3Q22.3) MUTATED AMP PEAK 3(3Q22.3) WILD-TYPE 
                           1                            5 
                  TCGA-AL-3472                   TCGA-B9-A69E 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-GL-7773                   TCGA-IA-A40U 
"AMP PEAK 3(3Q22.3) WILD-TYPE" "AMP PEAK 3(3Q22.3) WILD-TYPE" 
                  TCGA-Q2-A5QZ 
"AMP PEAK 3(3Q22.3) WILD-TYPE" 

Clustering(4) Variable = AMP PEAK 4(7Q22.1) MUTATION ANALYSIS
D4V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 4(7Q22.1) MUTATED   81  5
  AMP PEAK 4(7Q22.1) WILD-TYPE 52 12
  AMP PEAK 4(7Q22.1) MUTATED AMP PEAK 4(7Q22.1) WILD-TYPE 
                          86                           64 
  AMP PEAK 4(7Q22.1) MUTATED AMP PEAK 4(7Q22.1) WILD-TYPE 
                           5                           12 
$`AMP PEAK 4(7Q22.1) MUTATED`
TCGA-A4-7288 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8310 
       16.21        19.13         0.89         1.61         0.07         0.03 
TCGA-A4-8311 TCGA-A4-8515 TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8630 TCGA-A4-A5XZ 
        0.07         0.69         0.76         0.03         0.30         0.07 
TCGA-A4-A6HP TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-7173 TCGA-B3-3925 
        0.13        53.79        13.55        30.35        44.61        33.83 
TCGA-B3-4103 TCGA-B3-8121 TCGA-B3-A6W5 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 
       30.58        12.46         2.79        50.50        28.18        26.40 
TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 
       20.61         0.46         1.15        15.12        43.99        22.06 
TCGA-B9-A5W7 TCGA-BQ-5881 TCGA-BQ-5884 TCGA-BQ-5887 TCGA-BQ-5889 TCGA-BQ-5891 
        9.14        47.80        26.04        25.35        10.88         0.95 
TCGA-BQ-5892 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7051 
       11.97         2.76       123.62        48.26        96.92        50.40 
TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 
        7.63         7.04         7.17         3.81        11.61        13.61 
TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7840 TCGA-DW-7841 
      129.86        35.93        37.55        24.46         3.75        14.63 
TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-EV-5901 
        3.02        28.80        80.88        51.19        61.02        34.19 
TCGA-EV-5903 TCGA-F9-A7VF TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6795 TCGA-G7-7502 
       24.89         0.23         4.01        51.78        39.25        25.84 
TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7966 TCGA-GL-8500 TCGA-GL-A59R TCGA-GL-A59T 
        9.17       194.79         3.68         7.76         5.85         2.99 
TCGA-IA-A40Y TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-KV-A6GD TCGA-KV-A6GE 
        2.04        21.34         4.80         0.07         5.26        16.64 
TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5E7 
        5.29        13.08        12.85         9.60         4.87        87.22 
TCGA-PJ-A5Z9 TCGA-Q2-A5QZ 
        5.72         1.87 

$`AMP PEAK 4(7Q22.1) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7915 TCGA-A4-8098 
       18.21         0.69         0.10        35.18         0.23         4.60 
TCGA-A4-8518 TCGA-A4-A48D TCGA-A4-A5Y0 TCGA-A4-A5Y1 TCGA-AL-3466 TCGA-AL-3467 
        0.10         0.03         3.88         2.86         9.63        58.45 
TCGA-AL-3473 TCGA-B1-5398 TCGA-B1-7332 TCGA-B3-3926 TCGA-B3-4104 TCGA-B9-A44B 
       25.08        19.56         7.33        10.09        34.49         2.10 
TCGA-B9-A5W8 TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 
        6.81         0.16         3.35        86.76        19.27         8.88 
TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5885 
       63.72        22.92        43.20        21.63        40.83        30.28 
TCGA-BQ-5886 TCGA-BQ-5888 TCGA-BQ-5890 TCGA-BQ-5893 TCGA-BQ-7048 TCGA-BQ-7049 
       26.04        13.25         7.66         7.92        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-DW-7839 
       61.28        49.84        26.27        20.12        11.28        13.78 
TCGA-DZ-6131 TCGA-DZ-6135 TCGA-EV-5902 TCGA-F9-A4JJ TCGA-G7-6792 TCGA-G7-6793 
       79.86        54.90        19.00         3.19        48.62        11.05 
TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 TCGA-GL-7773 TCGA-GL-A4EM TCGA-IA-A40U 
       34.82        25.15        14.66        12.92         1.05        16.80 
TCGA-IA-A40X TCGA-IZ-8195 TCGA-J7-8537 TCGA-MH-A560 TCGA-MH-A561 TCGA-P4-A5E6 
       14.14        22.26         0.13        17.85        14.40        99.78 
TCGA-P4-A5EA TCGA-P4-A5EB TCGA-P4-A5ED TCGA-PJ-A5Z8 
        6.61        84.95        92.58         3.72 

  AMP PEAK 4(7Q22.1) MUTATED AMP PEAK 4(7Q22.1) WILD-TYPE 
                        0.03                         0.03 
  AMP PEAK 4(7Q22.1) MUTATED AMP PEAK 4(7Q22.1) WILD-TYPE 
                      194.79                        99.78 
  AMP PEAK 4(7Q22.1) MUTATED AMP PEAK 4(7Q22.1) WILD-TYPE 
                      12.655                       17.325 
[1] "0.0 - 194.8 (12.7)" "0.0 - 99.8 (17.3)" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-7734                   TCGA-A4-7915 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-7997 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-8098                   TCGA-A4-8310 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-8311                   TCGA-A4-8515 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-8516                   TCGA-A4-8517 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-8518                   TCGA-A4-8630 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-A48D                   TCGA-A4-A5XZ 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-A5Y0                   TCGA-A4-A5Y1 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-A4-A6HP                   TCGA-AL-3466 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-AL-3467                   TCGA-AL-3468 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-AL-3471                   TCGA-AL-3472 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-AL-3473                   TCGA-AL-7173 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-B1-5398                   TCGA-B1-7332 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-B3-3925                   TCGA-B3-3926 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-B3-4103                   TCGA-B3-4104 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-B3-8121                   TCGA-B3-A6W5 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-B9-4113                   TCGA-B9-4114 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-B9-4115                   TCGA-B9-4116 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-B9-5155                   TCGA-B9-5156 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-B9-7268                   TCGA-B9-A44B 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-B9-A5W7                   TCGA-B9-A5W8 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-B9-A5W9                   TCGA-B9-A69E 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5875                   TCGA-BQ-5876 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5877                   TCGA-BQ-5878 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5879                   TCGA-BQ-5880 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5881                   TCGA-BQ-5882 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5883                   TCGA-BQ-5884 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-BQ-5885                   TCGA-BQ-5886 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5887                   TCGA-BQ-5888 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5889                   TCGA-BQ-5890 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5891                   TCGA-BQ-5892 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-BQ-5893                   TCGA-BQ-5894 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-BQ-7044                   TCGA-BQ-7045 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-BQ-7046                   TCGA-BQ-7048 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7049                   TCGA-BQ-7050 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7051                   TCGA-BQ-7053 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7055                   TCGA-BQ-7056 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7058                   TCGA-BQ-7059 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-BQ-7060                   TCGA-BQ-7061 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-BQ-7062                   TCGA-DW-5560 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DW-5561                   TCGA-DW-7834 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DW-7836                   TCGA-DW-7837 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DW-7838                   TCGA-DW-7839 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-DW-7840                   TCGA-DW-7841 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DW-7842                   TCGA-DW-7963 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-F9-A4JJ                   TCGA-F9-A7VF 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-G7-6789                   TCGA-G7-6790 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-G7-A4TM 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-GL-6846                   TCGA-GL-7773 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-GL-7966                   TCGA-GL-8500 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-GL-A4EM                   TCGA-GL-A59R 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-GL-A59T                   TCGA-IA-A40U 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-IA-A40X                   TCGA-IA-A40Y 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-IZ-8195                   TCGA-IZ-8196 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-IZ-A6M8                   TCGA-IZ-A6M9 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-J7-8537                   TCGA-KV-A6GD 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-KV-A6GE                   TCGA-KV-A74V 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-MH-A55W                   TCGA-MH-A55Z 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-MH-A560                   TCGA-MH-A561 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-MH-A562                   TCGA-O9-A75Z 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-P4-A5E6                   TCGA-P4-A5E7 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-P4-A5EA                   TCGA-P4-A5EB 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-P4-A5ED                   TCGA-PJ-A5Z8 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-PJ-A5Z9                   TCGA-Q2-A5QZ 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-7734                   TCGA-A4-7915 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-7997 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-8098                   TCGA-A4-8310 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-8311                   TCGA-A4-8515 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-8516                   TCGA-A4-8517 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-8518                   TCGA-A4-8630 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-A48D                   TCGA-A4-A5XZ 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-A5Y0                   TCGA-A4-A5Y1 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-A4-A6HP                   TCGA-AL-3466 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-AL-3467                   TCGA-AL-3468 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-AL-3471                   TCGA-AL-3472 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-AL-3473                   TCGA-AL-7173 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-B1-5398                   TCGA-B1-7332 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-B3-3925                   TCGA-B3-3926 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-B3-4103                   TCGA-B3-4104 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-B3-8121                   TCGA-B3-A6W5 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-B9-4113                   TCGA-B9-4114 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-B9-4115                   TCGA-B9-4116 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-B9-5155                   TCGA-B9-5156 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-B9-7268                   TCGA-B9-A44B 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-B9-A5W7                   TCGA-B9-A5W8 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-B9-A5W9                   TCGA-B9-A69E 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5875                   TCGA-BQ-5876 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5877                   TCGA-BQ-5878 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5879                   TCGA-BQ-5880 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5881                   TCGA-BQ-5882 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5883                   TCGA-BQ-5884 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-BQ-5885                   TCGA-BQ-5886 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5887                   TCGA-BQ-5888 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5889                   TCGA-BQ-5890 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5891                   TCGA-BQ-5892 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-BQ-5893                   TCGA-BQ-5894 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-BQ-7044                   TCGA-BQ-7045 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-BQ-7046                   TCGA-BQ-7048 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7049                   TCGA-BQ-7050 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7051                   TCGA-BQ-7053 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7055                   TCGA-BQ-7056 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7058                   TCGA-BQ-7059 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-BQ-7060                   TCGA-BQ-7061 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-BQ-7062                   TCGA-DW-5560 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DW-5561                   TCGA-DW-7834 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DW-7836                   TCGA-DW-7837 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DW-7838                   TCGA-DW-7839 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-DW-7840                   TCGA-DW-7841 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DW-7842                   TCGA-DW-7963 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-F9-A4JJ                   TCGA-F9-A7VF 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-G7-6789                   TCGA-G7-6790 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-G7-A4TM 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-GL-6846                   TCGA-GL-7773 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-GL-7966                   TCGA-GL-8500 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-GL-A4EM                   TCGA-GL-A59R 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-GL-A59T                   TCGA-IA-A40U 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-IA-A40X                   TCGA-IA-A40Y 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-IZ-8195                   TCGA-IZ-8196 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-IZ-A6M8                   TCGA-IZ-A6M9 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-J7-8537                   TCGA-KV-A6GD 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-KV-A6GE                   TCGA-KV-A74V 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-MH-A55W                   TCGA-MH-A55Z 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-MH-A560                   TCGA-MH-A561 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-MH-A562                   TCGA-O9-A75Z 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-P4-A5E6                   TCGA-P4-A5E7 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-P4-A5EA                   TCGA-P4-A5EB 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-P4-A5ED                   TCGA-PJ-A5Z8 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-PJ-A5Z9                   TCGA-Q2-A5QZ 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-7286                   TCGA-A4-7287 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7288                   TCGA-A4-7583 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7585                   TCGA-A4-7732 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-7734                   TCGA-A4-7915 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-A4-7996                   TCGA-A4-7997 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-8098                   TCGA-A4-8310 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-8311                   TCGA-A4-8515 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-8516                   TCGA-A4-8517 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-8518                   TCGA-A4-8630 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-A48D                   TCGA-A4-A5XZ 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-A4-A5Y0                   TCGA-A4-A5Y1 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-A4-A6HP                   TCGA-AL-3466 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-AL-3467                   TCGA-AL-3468 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-AL-3471                   TCGA-AL-3472 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-AL-3473                   TCGA-AL-7173 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-B1-5398                   TCGA-B1-7332 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-B3-3925                   TCGA-B3-3926 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-B3-4103                   TCGA-B3-4104 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-B3-8121                   TCGA-B3-A6W5 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-B9-4113                   TCGA-B9-4114 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-B9-4115                   TCGA-B9-4116 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-B9-4117                   TCGA-B9-4617 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-B9-5155                   TCGA-B9-5156 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-B9-7268                   TCGA-B9-A44B 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-B9-A5W7                   TCGA-B9-A5W8 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-B9-A5W9                   TCGA-B9-A69E 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5875                   TCGA-BQ-5876 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5877                   TCGA-BQ-5878 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5879                   TCGA-BQ-5880 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5881                   TCGA-BQ-5882 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5883                   TCGA-BQ-5884 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-BQ-5885                   TCGA-BQ-5886 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5887                   TCGA-BQ-5888 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5889                   TCGA-BQ-5890 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-5891                   TCGA-BQ-5892 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-BQ-5893                   TCGA-BQ-5894 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-BQ-7044                   TCGA-BQ-7045 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-BQ-7046                   TCGA-BQ-7048 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7049                   TCGA-BQ-7050 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7051                   TCGA-BQ-7053 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7055                   TCGA-BQ-7056 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-BQ-7058                   TCGA-BQ-7059 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-BQ-7060                   TCGA-BQ-7061 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-BQ-7062                   TCGA-DW-5560 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DW-5561                   TCGA-DW-7834 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DW-7836                   TCGA-DW-7837 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DW-7838                   TCGA-DW-7839 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-DW-7840                   TCGA-DW-7841 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DW-7842                   TCGA-DW-7963 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DZ-6131                   TCGA-DZ-6132 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DZ-6133                   TCGA-DZ-6134 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-DZ-6135                   TCGA-EV-5901 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-EV-5902                   TCGA-EV-5903 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-F9-A4JJ                   TCGA-F9-A7VF 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-G7-6789                   TCGA-G7-6790 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-G7-6792                   TCGA-G7-6793 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-G7-6795                   TCGA-G7-6796 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-G7-6797                   TCGA-G7-7501 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-G7-7502                   TCGA-G7-A4TM 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-GL-6846                   TCGA-GL-7773 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-GL-7966                   TCGA-GL-8500 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-GL-A4EM                   TCGA-GL-A59R 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-GL-A59T                   TCGA-IA-A40U 
  "AMP PEAK 4(7Q22.1) MUTATED" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-IA-A40X                   TCGA-IA-A40Y 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-IZ-8195                   TCGA-IZ-8196 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-IZ-A6M8                   TCGA-IZ-A6M9 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-J7-8537                   TCGA-KV-A6GD 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-KV-A6GE                   TCGA-KV-A74V 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-MH-A55W                   TCGA-MH-A55Z 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-MH-A560                   TCGA-MH-A561 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-MH-A562                   TCGA-O9-A75Z 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-P4-A5E6                   TCGA-P4-A5E7 
"AMP PEAK 4(7Q22.1) WILD-TYPE"   "AMP PEAK 4(7Q22.1) MUTATED" 
                  TCGA-P4-A5EA                   TCGA-P4-A5EB 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-P4-A5ED                   TCGA-PJ-A5Z8 
"AMP PEAK 4(7Q22.1) WILD-TYPE" "AMP PEAK 4(7Q22.1) WILD-TYPE" 
                  TCGA-PJ-A5Z9                   TCGA-Q2-A5QZ 
  "AMP PEAK 4(7Q22.1) MUTATED"   "AMP PEAK 4(7Q22.1) MUTATED" 
[1] "hr=" "2.7"
D4V2, continuous
                              vv
clus                           STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 4(7Q22.1) MUTATED        67        4        12        6
  AMP PEAK 4(7Q22.1) WILD-TYPE      28        7        25        4
D4V3, multiclass
           clus
vv          AMP PEAK 4(7Q22.1) MUTATED AMP PEAK 4(7Q22.1) WILD-TYPE
  STAGE I                           67                           28
  STAGE II                           4                            7
  STAGE III                         12                           25
  STAGE IV                           6                            4
                              vv
clus                           T1 T2 T3+T4
  AMP PEAK 4(7Q22.1) MUTATED   69 11    17
  AMP PEAK 4(7Q22.1) WILD-TYPE 33  6    27
D4V4, multiclass
       clus
vv      AMP PEAK 4(7Q22.1) MUTATED AMP PEAK 4(7Q22.1) WILD-TYPE
  T1                            69                           33
  T2                            11                            6
  T3+T4                         17                           27
                              vv
clus                           N0 N1 N2
  AMP PEAK 4(7Q22.1) MUTATED   13  5  2
  AMP PEAK 4(7Q22.1) WILD-TYPE 14 11  2
D4V5, multiclass
    clus
vv   AMP PEAK 4(7Q22.1) MUTATED AMP PEAK 4(7Q22.1) WILD-TYPE
  N0                         13                           14
  N1                          5                           11
  N2                          2                            2
                              vv
clus                           M0 M1 MX
  AMP PEAK 4(7Q22.1) MUTATED   32  3 52
  AMP PEAK 4(7Q22.1) WILD-TYPE 30  3 30
D4V6, multiclass
    clus
vv   AMP PEAK 4(7Q22.1) MUTATED AMP PEAK 4(7Q22.1) WILD-TYPE
  M0                         32                           30
  M1                          3                            3
  MX                         52                           30
D4V7, binary
                              cls
clus                            0  1
  AMP PEAK 4(7Q22.1) MUTATED   25 72
  AMP PEAK 4(7Q22.1) WILD-TYPE 24 42
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 4(7Q22.1) MUTATED     25   72
  AMP PEAK 4(7Q22.1) WILD-TYPE   24   42
        clus
vv       AMP PEAK 4(7Q22.1) MUTATED AMP PEAK 4(7Q22.1) WILD-TYPE
  FEMALE                         25                           24
  MALE                           72                           42
D4V8, continuous
D4V9, continuous
D4V10, continuous

Clustering(5) Variable = AMP PEAK 5(17Q25.2) MUTATION ANALYSIS
D5V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 5(17Q25.2) MUTATED   98 12
  AMP PEAK 5(17Q25.2) WILD-TYPE 35  5
  AMP PEAK 5(17Q25.2) MUTATED AMP PEAK 5(17Q25.2) WILD-TYPE 
                          110                            40 
  AMP PEAK 5(17Q25.2) MUTATED AMP PEAK 5(17Q25.2) WILD-TYPE 
                           12                             5 
$`AMP PEAK 5(17Q25.2) MUTATED`
TCGA-A4-7286 TCGA-A4-7288 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 
       18.21        16.21        35.18        19.13         0.89         0.23 
TCGA-A4-7996 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 TCGA-A4-8515 TCGA-A4-8516 
        1.61         4.60         0.03         0.07         0.69         0.76 
TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A5XZ TCGA-A4-A5Y0 TCGA-A4-A5Y1 
        0.03         0.10         0.30         0.07         3.88         2.86 
TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-B1-7332 
        0.13         9.63        53.79        13.55        30.35         7.33 
TCGA-B3-3925 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B3-A6W5 TCGA-B9-4113 
       33.83        30.58        34.49        12.46         2.79        50.50 
TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 
       28.18        26.40         0.46         1.15        15.12        43.99 
TCGA-B9-7268 TCGA-B9-A44B TCGA-B9-A5W7 TCGA-B9-A5W9 TCGA-BQ-5875 TCGA-BQ-5877 
       22.06         2.10         9.14         0.16        86.76         8.88 
TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5890 
       43.20        47.80        26.04        25.35        13.25         7.66 
TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7051 
        0.95        11.97         7.92        48.26        96.92        50.40 
TCGA-BQ-7053 TCGA-BQ-7058 TCGA-BQ-7060 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 
       49.84        11.28         7.04         3.81        11.61        13.61 
TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 
      129.86        35.93        37.55        24.46        13.78         3.75 
TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 
       14.63         3.02        28.80        79.86        80.88        51.19 
TCGA-DZ-6134 TCGA-EV-5901 TCGA-EV-5903 TCGA-F9-A7VF TCGA-G7-6789 TCGA-G7-6790 
       61.02        34.19        24.89         0.23         4.01        51.78 
TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-7502 TCGA-G7-A4TM TCGA-GL-6846 
       11.05        39.25        34.82        25.84         9.17       194.79 
TCGA-GL-7966 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U TCGA-IA-A40Y 
        3.68         1.05         5.85         2.99        16.80         2.04 
TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-J7-8537 TCGA-KV-A6GD 
       22.26        21.34         4.80         0.07         0.13         5.26 
TCGA-KV-A6GE TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 
       16.64         5.29        13.08        12.85        17.85        14.40 
TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5E7 TCGA-P4-A5EA TCGA-P4-A5EB TCGA-P4-A5ED 
        9.60         4.87        87.22         6.61        84.95        92.58 
TCGA-PJ-A5Z9 TCGA-Q2-A5QZ 
        5.72         1.87 

$`AMP PEAK 5(17Q25.2) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7583 TCGA-A4-7997 TCGA-A4-A48D TCGA-AL-3467 TCGA-AL-3473 
        0.69         0.10         0.07         0.03        58.45        25.08 
TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3926 TCGA-B9-4116 TCGA-B9-A5W8 TCGA-B9-A69E 
       44.61        19.56        10.09        20.61         6.81         3.35 
TCGA-BQ-5876 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 
       19.27        63.72        22.92        21.63        40.83        26.04 
TCGA-BQ-5885 TCGA-BQ-5889 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7048 TCGA-BQ-7049 
       30.28        10.88         2.76       123.62        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7059 TCGA-BQ-7061 TCGA-DZ-6135 
       61.28        26.27        20.12         7.63         7.17        54.90 
TCGA-EV-5902 TCGA-F9-A4JJ TCGA-G7-6792 TCGA-G7-6797 TCGA-G7-7501 TCGA-GL-7773 
       19.00         3.19        48.62        25.15        14.66        12.92 
TCGA-GL-8500 TCGA-IA-A40X TCGA-P4-A5E6 TCGA-PJ-A5Z8 
        7.76        14.14        99.78         3.72 

  AMP PEAK 5(17Q25.2) MUTATED AMP PEAK 5(17Q25.2) WILD-TYPE 
                         0.03                          0.03 
  AMP PEAK 5(17Q25.2) MUTATED AMP PEAK 5(17Q25.2) WILD-TYPE 
                       194.79                        123.62 
  AMP PEAK 5(17Q25.2) MUTATED AMP PEAK 5(17Q25.2) WILD-TYPE 
                       12.965                        19.840 
[1] "0.0 - 194.8 (13.0)" "0.0 - 123.6 (19.8)"
                   TCGA-A4-7286                    TCGA-A4-7287 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-7734                    TCGA-A4-7915 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-7996                    TCGA-A4-7997 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-8311                    TCGA-A4-8515 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-8516                    TCGA-A4-8517 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-8518                    TCGA-A4-8630 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-AL-3471                    TCGA-AL-3472 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"AMP PEAK 5(17Q25.2) WILD-TYPE" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B3-3925                    TCGA-B3-3926 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B9-4113                    TCGA-B9-4114 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B9-4115                    TCGA-B9-4116 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B9-5155                    TCGA-B9-5156 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"AMP PEAK 5(17Q25.2) WILD-TYPE" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"AMP PEAK 5(17Q25.2) WILD-TYPE" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"AMP PEAK 5(17Q25.2) WILD-TYPE" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DW-5561                    TCGA-DW-7834 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DW-7836                    TCGA-DW-7837 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DW-7838                    TCGA-DW-7839 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DW-7840                    TCGA-DW-7841 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DW-7842                    TCGA-DW-7963 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-G7-6789                    TCGA-G7-6790 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"AMP PEAK 5(17Q25.2) WILD-TYPE" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-GL-6846                    TCGA-GL-7773 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-MH-A560                    TCGA-MH-A561 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-7734                    TCGA-A4-7915 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-7996                    TCGA-A4-7997 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-8311                    TCGA-A4-8515 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-8516                    TCGA-A4-8517 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-8518                    TCGA-A4-8630 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-AL-3471                    TCGA-AL-3472 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"AMP PEAK 5(17Q25.2) WILD-TYPE" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B3-3925                    TCGA-B3-3926 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B9-4113                    TCGA-B9-4114 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B9-4115                    TCGA-B9-4116 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B9-5155                    TCGA-B9-5156 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"AMP PEAK 5(17Q25.2) WILD-TYPE" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"AMP PEAK 5(17Q25.2) WILD-TYPE" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"AMP PEAK 5(17Q25.2) WILD-TYPE" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DW-5561                    TCGA-DW-7834 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DW-7836                    TCGA-DW-7837 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DW-7838                    TCGA-DW-7839 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DW-7840                    TCGA-DW-7841 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DW-7842                    TCGA-DW-7963 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-G7-6789                    TCGA-G7-6790 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"AMP PEAK 5(17Q25.2) WILD-TYPE" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-GL-6846                    TCGA-GL-7773 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-MH-A560                    TCGA-MH-A561 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-7734                    TCGA-A4-7915 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-7996                    TCGA-A4-7997 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-8311                    TCGA-A4-8515 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-8516                    TCGA-A4-8517 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-8518                    TCGA-A4-8630 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-AL-3471                    TCGA-AL-3472 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"AMP PEAK 5(17Q25.2) WILD-TYPE" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B3-3925                    TCGA-B3-3926 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B9-4113                    TCGA-B9-4114 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B9-4115                    TCGA-B9-4116 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B9-5155                    TCGA-B9-5156 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"AMP PEAK 5(17Q25.2) WILD-TYPE" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"AMP PEAK 5(17Q25.2) WILD-TYPE" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"AMP PEAK 5(17Q25.2) WILD-TYPE" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DW-5561                    TCGA-DW-7834 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DW-7836                    TCGA-DW-7837 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DW-7838                    TCGA-DW-7839 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DW-7840                    TCGA-DW-7841 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DW-7842                    TCGA-DW-7963 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-G7-6789                    TCGA-G7-6790 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"AMP PEAK 5(17Q25.2) WILD-TYPE" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-GL-6846                    TCGA-GL-7773 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-MH-A560                    TCGA-MH-A561 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"AMP PEAK 5(17Q25.2) WILD-TYPE"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
  "AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
  "AMP PEAK 5(17Q25.2) MUTATED"   "AMP PEAK 5(17Q25.2) MUTATED" 
[1] "hr=" "1.1"
D5V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 5(17Q25.2) MUTATED        74        8        23        7
  AMP PEAK 5(17Q25.2) WILD-TYPE      21        3        14        3
D5V3, multiclass
           clus
vv          AMP PEAK 5(17Q25.2) MUTATED AMP PEAK 5(17Q25.2) WILD-TYPE
  STAGE I                            74                            21
  STAGE II                            8                             3
  STAGE III                          23                            14
  STAGE IV                            7                             3
                               vv
clus                            T1 T2 T3+T4
  AMP PEAK 5(17Q25.2) MUTATED   77 14    29
  AMP PEAK 5(17Q25.2) WILD-TYPE 25  3    15
D5V4, multiclass
       clus
vv      AMP PEAK 5(17Q25.2) MUTATED AMP PEAK 5(17Q25.2) WILD-TYPE
  T1                             77                            25
  T2                             14                             3
  T3+T4                          29                            15
                               vv
clus                            N0 N1 N2
  AMP PEAK 5(17Q25.2) MUTATED   19 10  3
  AMP PEAK 5(17Q25.2) WILD-TYPE  8  6  1
D5V5, multiclass
    clus
vv   AMP PEAK 5(17Q25.2) MUTATED AMP PEAK 5(17Q25.2) WILD-TYPE
  N0                          19                             8
  N1                          10                             6
  N2                           3                             1
                               vv
clus                            M0 M1 MX
  AMP PEAK 5(17Q25.2) MUTATED   35  4 70
  AMP PEAK 5(17Q25.2) WILD-TYPE 27  2 12
D5V6, multiclass
    clus
vv   AMP PEAK 5(17Q25.2) MUTATED AMP PEAK 5(17Q25.2) WILD-TYPE
  M0                          35                            27
  M1                           4                             2
  MX                          70                            12
D5V7, binary
                               cls
clus                             0  1
  AMP PEAK 5(17Q25.2) MUTATED   30 90
  AMP PEAK 5(17Q25.2) WILD-TYPE 19 24
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 5(17Q25.2) MUTATED     30   90
  AMP PEAK 5(17Q25.2) WILD-TYPE   19   24
        clus
vv       AMP PEAK 5(17Q25.2) MUTATED AMP PEAK 5(17Q25.2) WILD-TYPE
  FEMALE                          30                            19
  MALE                            90                            24
D5V8, continuous
D5V9, continuous
[1] "Remove cluster labels:"        "AMP PEAK 5(17Q25.2) WILD-TYPE"
clus
  AMP PEAK 5(17Q25.2) MUTATED AMP PEAK 5(17Q25.2) WILD-TYPE 
                            7                             2 
                 TCGA-B9-A44B                  TCGA-GL-A59T 
"AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) MUTATED" 
                 TCGA-IA-A40U                  TCGA-P4-A5E7 
"AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) MUTATED" 
                 TCGA-P4-A5EB                  TCGA-PJ-A5Z9 
"AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) MUTATED" 
                 TCGA-Q2-A5QZ 
"AMP PEAK 5(17Q25.2) MUTATED" 
D5V10, continuous
[1] "Remove cluster labels:"        "AMP PEAK 5(17Q25.2) WILD-TYPE"
clus
  AMP PEAK 5(17Q25.2) MUTATED AMP PEAK 5(17Q25.2) WILD-TYPE 
                            4                             2 
                 TCGA-AL-3472                  TCGA-IA-A40U 
"AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) MUTATED" 
                 TCGA-PJ-A5Z9                  TCGA-Q2-A5QZ 
"AMP PEAK 5(17Q25.2) MUTATED" "AMP PEAK 5(17Q25.2) MUTATED" 

Clustering(6) Variable = AMP PEAK 6(19P13.2) MUTATION ANALYSIS
D6V1, survival
                               sevent
clus2                             0   1
  AMP PEAK 6(19P13.2) MUTATED    16   1
  AMP PEAK 6(19P13.2) WILD-TYPE 117  16
  AMP PEAK 6(19P13.2) MUTATED AMP PEAK 6(19P13.2) WILD-TYPE 
                           17                           133 
  AMP PEAK 6(19P13.2) MUTATED AMP PEAK 6(19P13.2) WILD-TYPE 
                            1                            16 
$`AMP PEAK 6(19P13.2) MUTATED`
TCGA-A4-7732 TCGA-A4-A5XZ TCGA-AL-3472 TCGA-B9-4113 TCGA-B9-4116 TCGA-B9-4617 
       19.13         0.07        30.35        50.50        20.61         1.15 
TCGA-BQ-5885 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-DW-5561 TCGA-DW-7840 TCGA-EV-5901 
       30.28         0.95        11.97        13.61         3.75        34.19 
TCGA-G7-6795 TCGA-G7-A4TM TCGA-GL-7966 TCGA-IZ-8196 TCGA-P4-A5E7 
       39.25         9.17         3.68        21.34        87.22 

$`AMP PEAK 6(19P13.2) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7734 
       18.21         0.69        16.21         0.10        35.18         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 
        0.23         1.61         0.07         4.60         0.03         0.07 
TCGA-A4-8515 TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D 
        0.69         0.76         0.03         0.10         0.30         0.03 
TCGA-A4-A5Y0 TCGA-A4-A5Y1 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 
        3.88         2.86         0.13         9.63        58.45        53.79 
TCGA-AL-3471 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 TCGA-B3-3925 
       13.55        25.08        44.61        19.56         7.33        33.83 
TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B3-A6W5 TCGA-B9-4114 
       10.09        30.58        34.49        12.46         2.79        28.18 
TCGA-B9-4115 TCGA-B9-4117 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A44B 
       26.40         0.46        15.12        43.99        22.06         2.10 
TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5876 
        9.14         6.81         0.16         3.35        86.76        19.27 
TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 
        8.88        63.72        22.92        43.20        47.80        21.63 
TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 
       40.83        26.04        26.04        25.35        13.25        10.88 
TCGA-BQ-5890 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 
        7.66         7.92         2.76       123.62        48.26        96.92 
TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 
       93.34        44.84        61.28        50.40        49.84        26.27 
TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 
       20.12        11.28         7.63         7.04         7.17         3.81 
TCGA-DW-5560 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 
       11.61       129.86        35.93        37.55        24.46        13.78 
TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 
       14.63         3.02        28.80        79.86        80.88        51.19 
TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A4JJ TCGA-F9-A7VF 
       61.02        54.90        19.00        24.89         3.19         0.23 
TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6796 TCGA-G7-6797 
        4.01        51.78        48.62        11.05        34.82        25.15 
TCGA-G7-7501 TCGA-G7-7502 TCGA-GL-6846 TCGA-GL-7773 TCGA-GL-8500 TCGA-GL-A4EM 
       14.66        25.84       194.79        12.92         7.76         1.05 
TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U TCGA-IA-A40X TCGA-IA-A40Y TCGA-IZ-8195 
        5.85         2.99        16.80        14.14         2.04        22.26 
TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-J7-8537 TCGA-KV-A6GD TCGA-KV-A6GE TCGA-KV-A74V 
        4.80         0.07         0.13         5.26        16.64         5.29 
TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 TCGA-MH-A562 TCGA-O9-A75Z 
       13.08        12.85        17.85        14.40         9.60         4.87 
TCGA-P4-A5E6 TCGA-P4-A5EA TCGA-P4-A5EB TCGA-P4-A5ED TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 
       99.78         6.61        84.95        92.58         3.72         5.72 
TCGA-Q2-A5QZ 
        1.87 

  AMP PEAK 6(19P13.2) MUTATED AMP PEAK 6(19P13.2) WILD-TYPE 
                         0.07                          0.03 
  AMP PEAK 6(19P13.2) MUTATED AMP PEAK 6(19P13.2) WILD-TYPE 
                        87.22                        194.79 
  AMP PEAK 6(19P13.2) MUTATED AMP PEAK 6(19P13.2) WILD-TYPE 
                        19.13                         13.78 
[1] "0.1 - 87.2 (19.1)"  "0.0 - 194.8 (13.8)"
                   TCGA-A4-7286                    TCGA-A4-7287 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
  "AMP PEAK 6(19P13.2) MUTATED" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
  "AMP PEAK 6(19P13.2) MUTATED" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
  "AMP PEAK 6(19P13.2) MUTATED"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
  "AMP PEAK 6(19P13.2) MUTATED" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
  "AMP PEAK 6(19P13.2) MUTATED" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
  "AMP PEAK 6(19P13.2) MUTATED" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
  "AMP PEAK 6(19P13.2) MUTATED" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
  "AMP PEAK 6(19P13.2) MUTATED" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
  "AMP PEAK 6(19P13.2) MUTATED" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
  "AMP PEAK 6(19P13.2) MUTATED"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
  "AMP PEAK 6(19P13.2) MUTATED" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
  "AMP PEAK 6(19P13.2) MUTATED" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
  "AMP PEAK 6(19P13.2) MUTATED" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
  "AMP PEAK 6(19P13.2) MUTATED" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
  "AMP PEAK 6(19P13.2) MUTATED" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
  "AMP PEAK 6(19P13.2) MUTATED" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
  "AMP PEAK 6(19P13.2) MUTATED"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
  "AMP PEAK 6(19P13.2) MUTATED" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
  "AMP PEAK 6(19P13.2) MUTATED" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
  "AMP PEAK 6(19P13.2) MUTATED" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
  "AMP PEAK 6(19P13.2) MUTATED" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"AMP PEAK 6(19P13.2) WILD-TYPE"   "AMP PEAK 6(19P13.2) MUTATED" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
[1] "hr=" "1.9"
D6V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 6(19P13.2) MUTATED        11        1         3        0
  AMP PEAK 6(19P13.2) WILD-TYPE      84       10        34       10
D6V3, multiclass
           clus
vv          AMP PEAK 6(19P13.2) MUTATED AMP PEAK 6(19P13.2) WILD-TYPE
  STAGE I                            11                            84
  STAGE II                            1                            10
  STAGE III                           3                            34
  STAGE IV                            0                            10
                               vv
clus                            T1 T2 T3+T4
  AMP PEAK 6(19P13.2) MUTATED   11  5     3
  AMP PEAK 6(19P13.2) WILD-TYPE 91 12    41
D6V4, multiclass
       clus
vv      AMP PEAK 6(19P13.2) MUTATED AMP PEAK 6(19P13.2) WILD-TYPE
  T1                             11                            91
  T2                              5                            12
  T3+T4                           3                            41
                               vv
clus                            N0 N1 N2
  AMP PEAK 6(19P13.2) MUTATED    5  1  0
  AMP PEAK 6(19P13.2) WILD-TYPE 22 15  4
D6V5, multiclass
    clus
vv   AMP PEAK 6(19P13.2) MUTATED AMP PEAK 6(19P13.2) WILD-TYPE
  N0                           5                            22
  N1                           1                            15
  N2                           0                             4
                               vv
clus                            M0 M1 MX
  AMP PEAK 6(19P13.2) MUTATED    8  0  9
  AMP PEAK 6(19P13.2) WILD-TYPE 54  6 73
D6V6, multiclass
    clus
vv   AMP PEAK 6(19P13.2) MUTATED AMP PEAK 6(19P13.2) WILD-TYPE
  M0                           8                            54
  M1                           0                             6
  MX                           9                            73
D6V7, binary
                               cls
clus                              0   1
  AMP PEAK 6(19P13.2) MUTATED     7  12
  AMP PEAK 6(19P13.2) WILD-TYPE  42 102
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 6(19P13.2) MUTATED      7   12
  AMP PEAK 6(19P13.2) WILD-TYPE   42  102
        clus
vv       AMP PEAK 6(19P13.2) MUTATED AMP PEAK 6(19P13.2) WILD-TYPE
  FEMALE                           7                            42
  MALE                            12                           102
D6V8, continuous
D6V9, continuous
[1] "Remove cluster labels:"      "AMP PEAK 6(19P13.2) MUTATED"
clus
  AMP PEAK 6(19P13.2) MUTATED AMP PEAK 6(19P13.2) WILD-TYPE 
                            1                             8 
                   TCGA-B9-A44B                    TCGA-B9-A69E 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-GL-7773                    TCGA-GL-A59T 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-IA-A40U                    TCGA-P4-A5EB 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
D6V10, continuous
[1] "Remove cluster labels:"      "AMP PEAK 6(19P13.2) MUTATED"
clus
  AMP PEAK 6(19P13.2) MUTATED AMP PEAK 6(19P13.2) WILD-TYPE 
                            1                             5 
                   TCGA-B9-A69E                    TCGA-GL-7773 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-IA-A40U                    TCGA-PJ-A5Z9 
"AMP PEAK 6(19P13.2) WILD-TYPE" "AMP PEAK 6(19P13.2) WILD-TYPE" 
                   TCGA-Q2-A5QZ 
"AMP PEAK 6(19P13.2) WILD-TYPE" 

Clustering(7) Variable = DEL PEAK  1(1P36.31) MUTATION ANALYSIS
D7V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  1(1P36.31) MUTATED    28   7
  DEL PEAK  1(1P36.31) WILD-TYPE 105  10
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            35                            115 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                             7                             10 
$`DEL PEAK  1(1P36.31) MUTATED`
TCGA-A4-7286 TCGA-A4-7583 TCGA-A4-8098 TCGA-A4-A5XZ TCGA-A4-A5Y1 TCGA-AL-3466 
       18.21         0.10         4.60         0.07         2.86         9.63 
TCGA-B1-7332 TCGA-B3-3926 TCGA-B9-4116 TCGA-B9-A44B TCGA-B9-A5W8 TCGA-B9-A69E 
        7.33        10.09        20.61         2.10         6.81         3.35 
TCGA-BQ-5875 TCGA-BQ-5877 TCGA-BQ-5879 TCGA-BQ-5882 TCGA-BQ-5885 TCGA-BQ-5888 
       86.76         8.88        22.92        21.63        30.28        13.25 
TCGA-BQ-5890 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7055 TCGA-EV-5902 TCGA-F9-A4JJ 
        7.66         2.76       123.62        26.27        19.00         3.19 
TCGA-G7-6789 TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-7502 TCGA-GL-7966 TCGA-GL-8500 
        4.01        25.15        14.66        25.84         3.68         7.76 
TCGA-IA-A40Y TCGA-J7-8537 TCGA-P4-A5EA TCGA-PJ-A5Z8 TCGA-Q2-A5QZ 
        2.04         0.13         6.61         3.72         1.87 

$`DEL PEAK  1(1P36.31) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 
        0.69        16.21        35.18        19.13         0.89         0.23 
TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8310 TCGA-A4-8311 TCGA-A4-8515 TCGA-A4-8516 
        1.61         0.07         0.03         0.07         0.69         0.76 
TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A5Y0 TCGA-A4-A6HP 
        0.03         0.10         0.30         0.03         3.88         0.13 
TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 
       58.45        53.79        13.55        30.35        25.08        44.61 
TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B3-A6W5 
       19.56        33.83        30.58        34.49        12.46         2.79 
TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 
       50.50        28.18        26.40         0.46         1.15        15.12 
TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A5W7 TCGA-B9-A5W9 TCGA-BQ-5876 TCGA-BQ-5878 
       43.99        22.06         9.14         0.16        19.27        63.72 
TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5886 TCGA-BQ-5887 
       43.20        47.80        40.83        26.04        26.04        25.35 
TCGA-BQ-5889 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-7045 TCGA-BQ-7046 
       10.88         0.95        11.97         7.92        48.26        96.92 
TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7056 
       93.34        44.84        61.28        50.40        49.84        20.12 
TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 
       11.28         7.63         7.04         7.17         3.81        11.61 
TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 
       13.61       129.86        35.93        37.55        24.46        13.78 
TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6132 
        3.75        14.63         3.02        28.80        79.86        80.88 
TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5903 TCGA-F9-A7VF 
       51.19        61.02        54.90        34.19        24.89         0.23 
TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-A4TM 
       51.78        48.62        11.05        39.25        34.82         9.17 
TCGA-GL-6846 TCGA-GL-7773 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U 
      194.79        12.92         1.05         5.85         2.99        16.80 
TCGA-IA-A40X TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-KV-A6GD 
       14.14        22.26        21.34         4.80         0.07         5.26 
TCGA-KV-A6GE TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 
       16.64         5.29        13.08        12.85        17.85        14.40 
TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EB TCGA-P4-A5ED 
        9.60         4.87        99.78        87.22        84.95        92.58 
TCGA-PJ-A5Z9 
        5.72 

  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                        123.62                         194.79 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                          7.66                          16.64 
[1] "0.1 - 123.6 (7.7)"  "0.0 - 194.8 (16.6)"
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
[1] "hr=" "4.6"
D7V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK  1(1P36.31) MUTATED         9        3        17        4
  DEL PEAK  1(1P36.31) WILD-TYPE      86        8        20        6
D7V3, multiclass
           clus
vv          DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  STAGE I                              9                             86
  STAGE II                             3                              8
  STAGE III                           17                             20
  STAGE IV                             4                              6
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK  1(1P36.31) MUTATED   11  4    20
  DEL PEAK  1(1P36.31) WILD-TYPE 91 13    24
D7V4, multiclass
       clus
vv      DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  T1                              11                             91
  T2                               4                             13
  T3+T4                           20                             24
                                vv
clus                             N0 N1 N2
  DEL PEAK  1(1P36.31) MUTATED    5 10  1
  DEL PEAK  1(1P36.31) WILD-TYPE 22  6  3
D7V5, multiclass
    clus
vv   DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  N0                            5                             22
  N1                           10                              6
  N2                            1                              3
                                vv
clus                             M0 M1 MX
  DEL PEAK  1(1P36.31) MUTATED   14  3 14
  DEL PEAK  1(1P36.31) WILD-TYPE 48  3 68
D7V6, multiclass
    clus
vv   DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  M0                           14                             48
  M1                            3                              3
  MX                           14                             68
D7V7, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.31) MUTATED   16 19
  DEL PEAK  1(1P36.31) WILD-TYPE 33 95
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.31) MUTATED     16   19
  DEL PEAK  1(1P36.31) WILD-TYPE   33   95
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  FEMALE                           16                             33
  MALE                             19                             95
D7V8, continuous
D7V9, continuous
D7V10, continuous
[1] "Remove cluster labels:"       "DEL PEAK  1(1P36.31) MUTATED"
clus
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                             2                              4 
                    TCGA-AL-3472                     TCGA-GL-7773 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-IA-A40U                     TCGA-PJ-A5Z9 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 

Clustering(8) Variable = DEL PEAK  2(2Q37.3) MUTATION ANALYSIS
D8V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  2(2Q37.3) MUTATED     6   1
  DEL PEAK  2(2Q37.3) WILD-TYPE 127  16
  DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE 
                            7                           143 
  DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE 
                            1                            16 
$`DEL PEAK  2(2Q37.3) MUTATED`
TCGA-A4-7585 TCGA-A4-A5Y0 TCGA-B3-4104 TCGA-B9-4117 TCGA-B9-A69E TCGA-BQ-5878 
       35.18         3.88        34.49         0.46         3.35        63.72 
TCGA-Q2-A5QZ 
        1.87 

$`DEL PEAK  2(2Q37.3) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7732 TCGA-A4-7734 
       18.21         0.69        16.21         0.10        19.13         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 
        0.23         1.61         0.07         4.60         0.03         0.07 
TCGA-A4-8515 TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D 
        0.69         0.76         0.03         0.10         0.30         0.03 
TCGA-A4-A5XZ TCGA-A4-A5Y1 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 
        0.07         2.86         0.13         9.63        58.45        53.79 
TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 
       13.55        30.35        25.08        44.61        19.56         7.33 
TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-8121 TCGA-B3-A6W5 TCGA-B9-4113 
       33.83        10.09        30.58        12.46         2.79        50.50 
TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 
       28.18        26.40        20.61         1.15        15.12        43.99 
TCGA-B9-7268 TCGA-B9-A44B TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 TCGA-BQ-5875 
       22.06         2.10         9.14         6.81         0.16        86.76 
TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 
       19.27         8.88        22.92        43.20        47.80        21.63 
TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 
       40.83        26.04        30.28        26.04        25.35        13.25 
TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 
       10.88         7.66         0.95        11.97         7.92         2.76 
TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 
      123.62        48.26        96.92        93.34        44.84        61.28 
TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 
       50.40        49.84        26.27        20.12        11.28         7.63 
TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 
        7.04         7.17         3.81        11.61        13.61       129.86 
TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 
       35.93        37.55        24.46        13.78         3.75        14.63 
TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 
        3.02        28.80        79.86        80.88        51.19        61.02 
TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A4JJ TCGA-F9-A7VF 
       54.90        34.19        19.00        24.89         3.19         0.23 
TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 
        4.01        51.78        48.62        11.05        39.25        34.82 
TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-7502 TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 
       25.15        14.66        25.84         9.17       194.79        12.92 
TCGA-GL-7966 TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U 
        3.68         7.76         1.05         5.85         2.99        16.80 
TCGA-IA-A40X TCGA-IA-A40Y TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 
       14.14         2.04        22.26        21.34         4.80         0.07 
TCGA-J7-8537 TCGA-KV-A6GD TCGA-KV-A6GE TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z 
        0.13         5.26        16.64         5.29        13.08        12.85 
TCGA-MH-A560 TCGA-MH-A561 TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 
       17.85        14.40         9.60         4.87        99.78        87.22 
TCGA-P4-A5EA TCGA-P4-A5EB TCGA-P4-A5ED TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 
        6.61        84.95        92.58         3.72         5.72 

  DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE 
                         0.46                          0.03 
  DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE 
                        63.72                        194.79 
  DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE 
                         3.88                         14.14 
[1] "0.5 - 63.7 (3.9)"   "0.0 - 194.8 (14.1)"
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
  "DEL PEAK  2(2Q37.3) MUTATED" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
  "DEL PEAK  2(2Q37.3) MUTATED" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  2(2Q37.3) WILD-TYPE"   "DEL PEAK  2(2Q37.3) MUTATED" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
  "DEL PEAK  2(2Q37.3) MUTATED" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"DEL PEAK  2(2Q37.3) WILD-TYPE"   "DEL PEAK  2(2Q37.3) MUTATED" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
"DEL PEAK  2(2Q37.3) WILD-TYPE"   "DEL PEAK  2(2Q37.3) MUTATED" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"DEL PEAK  2(2Q37.3) WILD-TYPE"   "DEL PEAK  2(2Q37.3) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
  "DEL PEAK  2(2Q37.3) MUTATED" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
  "DEL PEAK  2(2Q37.3) MUTATED" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  2(2Q37.3) WILD-TYPE"   "DEL PEAK  2(2Q37.3) MUTATED" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
  "DEL PEAK  2(2Q37.3) MUTATED" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"DEL PEAK  2(2Q37.3) WILD-TYPE"   "DEL PEAK  2(2Q37.3) MUTATED" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
"DEL PEAK  2(2Q37.3) WILD-TYPE"   "DEL PEAK  2(2Q37.3) MUTATED" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"DEL PEAK  2(2Q37.3) WILD-TYPE"   "DEL PEAK  2(2Q37.3) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
  "DEL PEAK  2(2Q37.3) MUTATED" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
  "DEL PEAK  2(2Q37.3) MUTATED" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  2(2Q37.3) WILD-TYPE"   "DEL PEAK  2(2Q37.3) MUTATED" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
  "DEL PEAK  2(2Q37.3) MUTATED" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"DEL PEAK  2(2Q37.3) WILD-TYPE"   "DEL PEAK  2(2Q37.3) MUTATED" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
"DEL PEAK  2(2Q37.3) WILD-TYPE"   "DEL PEAK  2(2Q37.3) MUTATED" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"DEL PEAK  2(2Q37.3) WILD-TYPE"   "DEL PEAK  2(2Q37.3) MUTATED" 
[1] "hr=" "1.5"
D8V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK  2(2Q37.3) MUTATED         1        1         5        0
  DEL PEAK  2(2Q37.3) WILD-TYPE      94       10        32       10
D8V3, multiclass
           clus
vv          DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE
  STAGE I                             1                            94
  STAGE II                            1                            10
  STAGE III                           5                            32
  STAGE IV                            0                            10
                               vv
clus                             T1  T2 T3+T4
  DEL PEAK  2(2Q37.3) MUTATED     1   2     5
  DEL PEAK  2(2Q37.3) WILD-TYPE 101  15    39
D8V4, multiclass
       clus
vv      DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE
  T1                              1                           101
  T2                              2                            15
  T3+T4                           5                            39
                               vv
clus                            N0 N1 N2
  DEL PEAK  2(2Q37.3) MUTATED    1  1  0
  DEL PEAK  2(2Q37.3) WILD-TYPE 26 15  4
D8V5, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  2(2Q37.3) MUTATED"
clus
  DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE 
                            2                            45 
                   TCGA-A4-7583                    TCGA-A4-7915 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-A57E                    TCGA-A4-A5Y1 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3472 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B9-7268 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5879 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5882 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5887 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7045 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7050 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7056 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-DW-7963 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-G7-6789 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6793                    TCGA-G7-6795 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-7501                    TCGA-GL-6846 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-A59R 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-IA-A40U                    TCGA-IA-A40Y 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-J7-6720                    TCGA-J7-8537 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-KV-A74V                    TCGA-P4-A5E6 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-P4-A5EA 
"DEL PEAK  2(2Q37.3) WILD-TYPE" 
                               vv
clus                            M0 M1 MX
  DEL PEAK  2(2Q37.3) MUTATED    4  0  2
  DEL PEAK  2(2Q37.3) WILD-TYPE 58  6 80
D8V6, multiclass
    clus
vv   DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE
  M0                           4                            58
  M1                           0                             6
  MX                           2                            80
D8V7, binary
                               cls
clus                              0   1
  DEL PEAK  2(2Q37.3) MUTATED     5   3
  DEL PEAK  2(2Q37.3) WILD-TYPE  44 111
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2Q37.3) MUTATED      5    3
  DEL PEAK  2(2Q37.3) WILD-TYPE   44  111
        clus
vv       DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE
  FEMALE                           5                            44
  MALE                             3                           111
D8V8, continuous
[1] "Remove cluster labels:"      "DEL PEAK  2(2Q37.3) MUTATED"
clus
  DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE 
                            1                            38 
                   TCGA-A4-7286                    TCGA-A4-7828 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-8310                    TCGA-A4-8311 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-8312                    TCGA-A4-8518 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-8630                    TCGA-A4-A4ZT 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-A57E                    TCGA-A4-A5DU 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-A4-A5XZ                    TCGA-A4-A6HP 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-DW-5560 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-EV-5901                    TCGA-EV-5902 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-EV-5903                    TCGA-G7-6790 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6793                    TCGA-G7-6796 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-IA-A40U                    TCGA-IA-A40X 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-IA-A40Y                    TCGA-J7-8537 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
D8V9, continuous
[1] "Remove cluster labels:"      "DEL PEAK  2(2Q37.3) MUTATED"
clus
  DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE 
                            2                             7 
                   TCGA-B9-A44B                    TCGA-GL-7773 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-P4-A5E7                    TCGA-P4-A5EB 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-PJ-A5Z9 
"DEL PEAK  2(2Q37.3) WILD-TYPE" 
D8V10, continuous
[1] "Remove cluster labels:"      "DEL PEAK  2(2Q37.3) MUTATED"
clus
  DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE 
                            2                             4 
                   TCGA-AL-3472                    TCGA-GL-7773 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 
                   TCGA-IA-A40U                    TCGA-PJ-A5Z9 
"DEL PEAK  2(2Q37.3) WILD-TYPE" "DEL PEAK  2(2Q37.3) WILD-TYPE" 

Clustering(9) Variable = DEL PEAK  3(3P22.1) MUTATION ANALYSIS
D9V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  3(3P22.1) MUTATED    11   3
  DEL PEAK  3(3P22.1) WILD-TYPE 122  14
  DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE 
                           14                           136 
  DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE 
                            3                            14 
$`DEL PEAK  3(3P22.1) MUTATED`
TCGA-A4-A5Y1 TCGA-AL-3473 TCGA-B9-A44B TCGA-B9-A69E TCGA-BQ-5877 TCGA-BQ-5882 
        2.86        25.08         2.10         3.35         8.88        21.63 
TCGA-BQ-5892 TCGA-DZ-6131 TCGA-G7-6789 TCGA-G7-7501 TCGA-GL-7966 TCGA-IA-A40Y 
       11.97        79.86         4.01        14.66         3.68         2.04 
TCGA-J7-8537 TCGA-Q2-A5QZ 
        0.13         1.87 

$`DEL PEAK  3(3P22.1) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 
       18.21         0.69        16.21         0.10        35.18        19.13 
TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 
        0.89         0.23         1.61         0.07         4.60         0.03 
TCGA-A4-8311 TCGA-A4-8515 TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 
        0.07         0.69         0.76         0.03         0.10         0.30 
TCGA-A4-A48D TCGA-A4-A5XZ TCGA-A4-A5Y0 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 
        0.03         0.07         3.88         0.13         9.63        58.45 
TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 
       53.79        13.55        30.35        44.61        19.56         7.33 
TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B3-A6W5 
       33.83        10.09        30.58        34.49        12.46         2.79 
TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 
       50.50        28.18        26.40        20.61         0.46         1.15 
TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 
       15.12        43.99        22.06         9.14         6.81         0.16 
TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 
       86.76        19.27        63.72        22.92        43.20        47.80 
TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 
       40.83        26.04        30.28        26.04        25.35        13.25 
TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 
       10.88         7.66         0.95         7.92         2.76       123.62 
TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 
       48.26        96.92        93.34        44.84        61.28        50.40 
TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 
       49.84        26.27        20.12        11.28         7.63         7.04 
TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 
        7.17         3.81        11.61        13.61       129.86        35.93 
TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 
       37.55        24.46        13.78         3.75        14.63         3.02 
TCGA-DW-7963 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 
       28.80        80.88        51.19        61.02        54.90        34.19 
TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A4JJ TCGA-F9-A7VF TCGA-G7-6790 TCGA-G7-6792 
       19.00        24.89         3.19         0.23        51.78        48.62 
TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7502 TCGA-G7-A4TM 
       11.05        39.25        34.82        25.15        25.84         9.17 
TCGA-GL-6846 TCGA-GL-7773 TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T 
      194.79        12.92         7.76         1.05         5.85         2.99 
TCGA-IA-A40U TCGA-IA-A40X TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 
       16.80        14.14        22.26        21.34         4.80         0.07 
TCGA-KV-A6GD TCGA-KV-A6GE TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 
        5.26        16.64         5.29        13.08        12.85        17.85 
TCGA-MH-A561 TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EA 
       14.40         9.60         4.87        99.78        87.22         6.61 
TCGA-P4-A5EB TCGA-P4-A5ED TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 
       84.95        92.58         3.72         5.72 

  DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE 
                        79.86                        194.79 
  DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE 
                        3.845                        14.875 
[1] "0.1 - 79.9 (3.8)"   "0.0 - 194.8 (14.9)"
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
  "DEL PEAK  3(3P22.1) MUTATED" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
  "DEL PEAK  3(3P22.1) MUTATED" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  3(3P22.1) MUTATED" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
  "DEL PEAK  3(3P22.1) MUTATED" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
  "DEL PEAK  3(3P22.1) MUTATED" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
  "DEL PEAK  3(3P22.1) MUTATED" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
  "DEL PEAK  3(3P22.1) MUTATED" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
  "DEL PEAK  3(3P22.1) MUTATED" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  3(3P22.1) MUTATED" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
  "DEL PEAK  3(3P22.1) MUTATED" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
  "DEL PEAK  3(3P22.1) MUTATED" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
  "DEL PEAK  3(3P22.1) MUTATED" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
  "DEL PEAK  3(3P22.1) MUTATED" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
  "DEL PEAK  3(3P22.1) MUTATED" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  3(3P22.1) MUTATED" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
  "DEL PEAK  3(3P22.1) MUTATED" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
  "DEL PEAK  3(3P22.1) MUTATED" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
  "DEL PEAK  3(3P22.1) MUTATED" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"DEL PEAK  3(3P22.1) WILD-TYPE"   "DEL PEAK  3(3P22.1) MUTATED" 
[1] "hr=" "4"  
D9V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK  3(3P22.1) MUTATED         1        1        10        3
  DEL PEAK  3(3P22.1) WILD-TYPE      94       10        27        7
D9V3, multiclass
           clus
vv          DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE
  STAGE I                             1                            94
  STAGE II                            1                            10
  STAGE III                          10                            27
  STAGE IV                            3                             7
                               vv
clus                             T1  T2 T3+T4
  DEL PEAK  3(3P22.1) MUTATED     2   2    11
  DEL PEAK  3(3P22.1) WILD-TYPE 100  15    33
D9V4, multiclass
       clus
vv      DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE
  T1                              2                           100
  T2                              2                            15
  T3+T4                          11                            33
                               vv
clus                            N0 N1 N2
  DEL PEAK  3(3P22.1) MUTATED    5  6  1
  DEL PEAK  3(3P22.1) WILD-TYPE 22 10  3
D9V5, multiclass
    clus
vv   DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE
  N0                           5                            22
  N1                           6                            10
  N2                           1                             3
                               vv
clus                            M0 M1 MX
  DEL PEAK  3(3P22.1) MUTATED    4  2  7
  DEL PEAK  3(3P22.1) WILD-TYPE 58  4 75
D9V6, multiclass
    clus
vv   DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE
  M0                           4                            58
  M1                           2                             4
  MX                           7                            75
D9V7, binary
                               cls
clus                              0   1
  DEL PEAK  3(3P22.1) MUTATED     6   9
  DEL PEAK  3(3P22.1) WILD-TYPE  43 105
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(3P22.1) MUTATED      6    9
  DEL PEAK  3(3P22.1) WILD-TYPE   43  105
        clus
vv       DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE
  FEMALE                           6                            43
  MALE                             9                           105
D9V8, continuous
D9V9, continuous
D9V10, continuous
[1] "Remove cluster labels:"      "DEL PEAK  3(3P22.1) MUTATED"
clus
  DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE 
                            2                             4 
                   TCGA-AL-3472                    TCGA-GL-7773 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 
                   TCGA-IA-A40U                    TCGA-PJ-A5Z9 
"DEL PEAK  3(3P22.1) WILD-TYPE" "DEL PEAK  3(3P22.1) WILD-TYPE" 

Clustering(10) Variable = DEL PEAK  4(4Q34.3) MUTATION ANALYSIS
D10V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  4(4Q34.3) MUTATED    13   3
  DEL PEAK  4(4Q34.3) WILD-TYPE 120  14
  DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE 
                           16                           134 
  DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE 
                            3                            14 
$`DEL PEAK  4(4Q34.3) MUTATED`
TCGA-A4-7287 TCGA-A4-8098 TCGA-B1-7332 TCGA-B3-3926 TCGA-B3-4104 TCGA-BQ-5876 
        0.69         4.60         7.33        10.09        34.49        19.27 
TCGA-BQ-5882 TCGA-BQ-5894 TCGA-DZ-6131 TCGA-F9-A4JJ TCGA-G7-7501 TCGA-GL-7966 
       21.63         2.76        79.86         3.19        14.66         3.68 
TCGA-IA-A40Y TCGA-J7-8537 TCGA-P4-A5EA TCGA-Q2-A5QZ 
        2.04         0.13         6.61         1.87 

$`DEL PEAK  4(4Q34.3) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 
       18.21        16.21         0.10        35.18        19.13         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8310 TCGA-A4-8311 TCGA-A4-8515 
        0.23         1.61         0.07         0.03         0.07         0.69 
TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A5XZ 
        0.76         0.03         0.10         0.30         0.03         0.07 
TCGA-A4-A5Y0 TCGA-A4-A5Y1 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 
        3.88         2.86         0.13         9.63        58.45        53.79 
TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 
       13.55        30.35        25.08        44.61        19.56        33.83 
TCGA-B3-4103 TCGA-B3-8121 TCGA-B3-A6W5 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 
       30.58        12.46         2.79        50.50        28.18        26.40 
TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 
       20.61         0.46         1.15        15.12        43.99        22.06 
TCGA-B9-A44B TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 
        2.10         9.14         6.81         0.16         3.35        86.76 
TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5883 
        8.88        63.72        22.92        43.20        47.80        40.83 
TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 
       26.04        30.28        26.04        25.35        13.25        10.88 
TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-7044 TCGA-BQ-7045 
        7.66         0.95        11.97         7.92       123.62        48.26 
TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 
       96.92        93.34        44.84        61.28        50.40        49.84 
TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 
       26.27        20.12        11.28         7.63         7.04         7.17 
TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 
        3.81        11.61        13.61       129.86        35.93        37.55 
TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 
       24.46        13.78         3.75        14.63         3.02        28.80 
TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 
       80.88        51.19        61.02        54.90        34.19        19.00 
TCGA-EV-5903 TCGA-F9-A7VF TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 
       24.89         0.23         4.01        51.78        48.62        11.05 
TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7502 TCGA-G7-A4TM TCGA-GL-6846 
       39.25        34.82        25.15        25.84         9.17       194.79 
TCGA-GL-7773 TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U 
       12.92         7.76         1.05         5.85         2.99        16.80 
TCGA-IA-A40X TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-KV-A6GD 
       14.14        22.26        21.34         4.80         0.07         5.26 
TCGA-KV-A6GE TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 
       16.64         5.29        13.08        12.85        17.85        14.40 
TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EB TCGA-P4-A5ED 
        9.60         4.87        99.78        87.22        84.95        92.58 
TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 
        3.72         5.72 

  DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE 
                        79.86                        194.79 
  DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE 
                        5.605                        14.875 
[1] "0.1 - 79.9 (5.6)"   "0.0 - 194.8 (14.9)"
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
  "DEL PEAK  4(4Q34.3) MUTATED" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  4(4Q34.3) MUTATED" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
  "DEL PEAK  4(4Q34.3) MUTATED" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
  "DEL PEAK  4(4Q34.3) MUTATED" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
  "DEL PEAK  4(4Q34.3) MUTATED" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
  "DEL PEAK  4(4Q34.3) MUTATED" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
  "DEL PEAK  4(4Q34.3) MUTATED" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  4(4Q34.3) MUTATED" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
  "DEL PEAK  4(4Q34.3) MUTATED" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
  "DEL PEAK  4(4Q34.3) MUTATED" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
  "DEL PEAK  4(4Q34.3) MUTATED" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
  "DEL PEAK  4(4Q34.3) MUTATED" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
  "DEL PEAK  4(4Q34.3) MUTATED" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  4(4Q34.3) MUTATED" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
  "DEL PEAK  4(4Q34.3) MUTATED" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
  "DEL PEAK  4(4Q34.3) MUTATED" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
  "DEL PEAK  4(4Q34.3) MUTATED" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
  "DEL PEAK  4(4Q34.3) MUTATED" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"DEL PEAK  4(4Q34.3) WILD-TYPE"   "DEL PEAK  4(4Q34.3) MUTATED" 
[1] "hr=" "3.7"
D10V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK  4(4Q34.3) MUTATED         4        2        10        2
  DEL PEAK  4(4Q34.3) WILD-TYPE      91        9        27        8
D10V3, multiclass
           clus
vv          DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  STAGE I                             4                            91
  STAGE II                            2                             9
  STAGE III                          10                            27
  STAGE IV                            2                             8
                               vv
clus                            T1 T2 T3+T4
  DEL PEAK  4(4Q34.3) MUTATED    4  3    11
  DEL PEAK  4(4Q34.3) WILD-TYPE 98 14    33
D10V4, multiclass
       clus
vv      DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  T1                              4                            98
  T2                              3                            14
  T3+T4                          11                            33
                               vv
clus                            N0 N1 N2
  DEL PEAK  4(4Q34.3) MUTATED    3  6  0
  DEL PEAK  4(4Q34.3) WILD-TYPE 24 10  4
D10V5, multiclass
    clus
vv   DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  N0                           3                            24
  N1                           6                            10
  N2                           0                             4
                               vv
clus                            M0 M1 MX
  DEL PEAK  4(4Q34.3) MUTATED    6  2 10
  DEL PEAK  4(4Q34.3) WILD-TYPE 56  4 72
D10V6, multiclass
    clus
vv   DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  M0                           6                            56
  M1                           2                             4
  MX                          10                            72
D10V7, binary
                               cls
clus                              0   1
  DEL PEAK  4(4Q34.3) MUTATED    11   7
  DEL PEAK  4(4Q34.3) WILD-TYPE  38 107
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(4Q34.3) MUTATED     11    7
  DEL PEAK  4(4Q34.3) WILD-TYPE   38  107
        clus
vv       DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  FEMALE                          11                            38
  MALE                             7                           107
D10V8, continuous
D10V9, continuous
[1] "Remove cluster labels:"      "DEL PEAK  4(4Q34.3) MUTATED"
clus
  DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE 
                            1                             8 
                   TCGA-B9-A44B                    TCGA-B9-A69E 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-GL-7773                    TCGA-GL-A59T 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-IA-A40U                    TCGA-P4-A5E7 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-P4-A5EB                    TCGA-PJ-A5Z9 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
D10V10, continuous
[1] "Remove cluster labels:"      "DEL PEAK  4(4Q34.3) MUTATED"
clus
  DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE 
                            1                             5 
                   TCGA-AL-3472                    TCGA-B9-A69E 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-GL-7773                    TCGA-IA-A40U 
"DEL PEAK  4(4Q34.3) WILD-TYPE" "DEL PEAK  4(4Q34.3) WILD-TYPE" 
                   TCGA-PJ-A5Z9 
"DEL PEAK  4(4Q34.3) WILD-TYPE" 

Clustering(11) Variable = DEL PEAK  5(5P14.2) MUTATION ANALYSIS
D11V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  5(5P14.2) MUTATED     5   4
  DEL PEAK  5(5P14.2) WILD-TYPE 128  13
  DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE 
                            9                           141 
  DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE 
                            4                            13 
$`DEL PEAK  5(5P14.2) MUTATED`
TCGA-A4-7286 TCGA-A4-7997 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5894 TCGA-F9-A4JJ 
       18.21         0.07        63.72        22.92         2.76         3.19 
TCGA-G7-6793 TCGA-P4-A5EA TCGA-Q2-A5QZ 
       11.05         6.61         1.87 

$`DEL PEAK  5(5P14.2) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 
        0.69        16.21         0.10        35.18        19.13         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 TCGA-A4-8515 
        0.23         1.61         4.60         0.03         0.07         0.69 
TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A5XZ 
        0.76         0.03         0.10         0.30         0.03         0.07 
TCGA-A4-A5Y0 TCGA-A4-A5Y1 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 
        3.88         2.86         0.13         9.63        58.45        53.79 
TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 
       13.55        30.35        25.08        44.61        19.56         7.33 
TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B3-A6W5 
       33.83        10.09        30.58        34.49        12.46         2.79 
TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 
       50.50        28.18        26.40        20.61         0.46         1.15 
TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A44B TCGA-B9-A5W7 TCGA-B9-A5W8 
       15.12        43.99        22.06         2.10         9.14         6.81 
TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5880 
        0.16         3.35        86.76        19.27         8.88        43.20 
TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 
       47.80        21.63        40.83        26.04        30.28        26.04 
TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 
       25.35        13.25        10.88         7.66         0.95        11.97 
TCGA-BQ-5893 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 
        7.92       123.62        48.26        96.92        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 
       61.28        50.40        49.84        26.27        20.12        11.28 
TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 
        7.63         7.04         7.17         3.81        11.61        13.61 
TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 
      129.86        35.93        37.55        24.46        13.78         3.75 
TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 
       14.63         3.02        28.80        79.86        80.88        51.19 
TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A7VF 
       61.02        54.90        34.19        19.00        24.89         0.23 
TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 
        4.01        51.78        48.62        39.25        34.82        25.15 
TCGA-G7-7501 TCGA-G7-7502 TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 TCGA-GL-7966 
       14.66        25.84         9.17       194.79        12.92         3.68 
TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U TCGA-IA-A40X 
        7.76         1.05         5.85         2.99        16.80        14.14 
TCGA-IA-A40Y TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-J7-8537 
        2.04        22.26        21.34         4.80         0.07         0.13 
TCGA-KV-A6GD TCGA-KV-A6GE TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 
        5.26        16.64         5.29        13.08        12.85        17.85 
TCGA-MH-A561 TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EB 
       14.40         9.60         4.87        99.78        87.22        84.95 
TCGA-P4-A5ED TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 
       92.58         3.72         5.72 

  DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE 
                        63.72                        194.79 
  DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE 
                         6.61                         14.40 
[1] "0.1 - 63.7 (6.6)"   "0.0 - 194.8 (14.4)"
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK  5(5P14.2) MUTATED" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"DEL PEAK  5(5P14.2) WILD-TYPE"   "DEL PEAK  5(5P14.2) MUTATED" 
                   TCGA-A4-8098                    TCGA-A4-8310 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
"DEL PEAK  5(5P14.2) WILD-TYPE"   "DEL PEAK  5(5P14.2) MUTATED" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
  "DEL PEAK  5(5P14.2) MUTATED" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK  5(5P14.2) WILD-TYPE"   "DEL PEAK  5(5P14.2) MUTATED" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
  "DEL PEAK  5(5P14.2) MUTATED" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  5(5P14.2) WILD-TYPE"   "DEL PEAK  5(5P14.2) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
  "DEL PEAK  5(5P14.2) MUTATED" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"DEL PEAK  5(5P14.2) WILD-TYPE"   "DEL PEAK  5(5P14.2) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK  5(5P14.2) MUTATED" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"DEL PEAK  5(5P14.2) WILD-TYPE"   "DEL PEAK  5(5P14.2) MUTATED" 
                   TCGA-A4-8098                    TCGA-A4-8310 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
"DEL PEAK  5(5P14.2) WILD-TYPE"   "DEL PEAK  5(5P14.2) MUTATED" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
  "DEL PEAK  5(5P14.2) MUTATED" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK  5(5P14.2) WILD-TYPE"   "DEL PEAK  5(5P14.2) MUTATED" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
  "DEL PEAK  5(5P14.2) MUTATED" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  5(5P14.2) WILD-TYPE"   "DEL PEAK  5(5P14.2) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
  "DEL PEAK  5(5P14.2) MUTATED" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"DEL PEAK  5(5P14.2) WILD-TYPE"   "DEL PEAK  5(5P14.2) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK  5(5P14.2) MUTATED" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"DEL PEAK  5(5P14.2) WILD-TYPE"   "DEL PEAK  5(5P14.2) MUTATED" 
                   TCGA-A4-8098                    TCGA-A4-8310 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
"DEL PEAK  5(5P14.2) WILD-TYPE"   "DEL PEAK  5(5P14.2) MUTATED" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
  "DEL PEAK  5(5P14.2) MUTATED" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK  5(5P14.2) WILD-TYPE"   "DEL PEAK  5(5P14.2) MUTATED" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
  "DEL PEAK  5(5P14.2) MUTATED" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  5(5P14.2) WILD-TYPE"   "DEL PEAK  5(5P14.2) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
  "DEL PEAK  5(5P14.2) MUTATED" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"DEL PEAK  5(5P14.2) WILD-TYPE"   "DEL PEAK  5(5P14.2) MUTATED" 
[1] "hr=" "7.1"
D11V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK  5(5P14.2) MUTATED         2        0         5        2
  DEL PEAK  5(5P14.2) WILD-TYPE      93       11        32        8
D11V3, multiclass
           clus
vv          DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE
  STAGE I                             2                            93
  STAGE II                            0                            11
  STAGE III                           5                            32
  STAGE IV                            2                             8
                               vv
clus                             T1  T2 T3+T4
  DEL PEAK  5(5P14.2) MUTATED     1   1     8
  DEL PEAK  5(5P14.2) WILD-TYPE 101  16    36
D11V4, multiclass
       clus
vv      DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE
  T1                              1                           101
  T2                              1                            16
  T3+T4                           8                            36
                               vv
clus                            N0 N1 N2
  DEL PEAK  5(5P14.2) MUTATED    0  4  1
  DEL PEAK  5(5P14.2) WILD-TYPE 27 12  3
D11V5, multiclass
    clus
vv   DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE
  N0                           0                            27
  N1                           4                            12
  N2                           1                             3
                               vv
clus                            M0 M1 MX
  DEL PEAK  5(5P14.2) MUTATED    4  1  4
  DEL PEAK  5(5P14.2) WILD-TYPE 58  5 78
D11V6, multiclass
    clus
vv   DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE
  M0                           4                            58
  M1                           1                             5
  MX                           4                            78
D11V7, binary
                               cls
clus                              0   1
  DEL PEAK  5(5P14.2) MUTATED     6   4
  DEL PEAK  5(5P14.2) WILD-TYPE  43 110
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(5P14.2) MUTATED      6    4
  DEL PEAK  5(5P14.2) WILD-TYPE   43  110
        clus
vv       DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE
  FEMALE                           6                            43
  MALE                             4                           110
D11V8, continuous
D11V9, continuous
[1] "Remove cluster labels:"      "DEL PEAK  5(5P14.2) MUTATED"
clus
  DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE 
                            1                             8 
                   TCGA-B9-A44B                    TCGA-B9-A69E 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-GL-7773                    TCGA-GL-A59T 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-IA-A40U                    TCGA-P4-A5E7 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-P4-A5EB                    TCGA-PJ-A5Z9 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
D11V10, continuous
[1] "Remove cluster labels:"      "DEL PEAK  5(5P14.2) MUTATED"
clus
  DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE 
                            1                             5 
                   TCGA-AL-3472                    TCGA-B9-A69E 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-GL-7773                    TCGA-IA-A40U 
"DEL PEAK  5(5P14.2) WILD-TYPE" "DEL PEAK  5(5P14.2) WILD-TYPE" 
                   TCGA-PJ-A5Z9 
"DEL PEAK  5(5P14.2) WILD-TYPE" 

Clustering(12) Variable = DEL PEAK  6(5Q15) MUTATION ANALYSIS
D12V1, survival
                             sevent
clus2                           0   1
  DEL PEAK  6(5Q15) MUTATED     7   3
  DEL PEAK  6(5Q15) WILD-TYPE 126  14
  DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE 
                         10                         140 
  DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE 
                          3                          14 
$`DEL PEAK  6(5Q15) MUTATED`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7997 TCGA-BQ-5879 TCGA-BQ-5894 TCGA-DZ-6131 
       18.21         0.69         0.07        22.92         2.76        79.86 
TCGA-F9-A4JJ TCGA-GL-7773 TCGA-GL-7966 TCGA-P4-A5EA 
        3.19        12.92         3.68         6.61 

$`DEL PEAK  6(5Q15) WILD-TYPE`
TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 
       16.21         0.10        35.18        19.13         0.89         0.23 
TCGA-A4-7996 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 TCGA-A4-8515 TCGA-A4-8516 
        1.61         4.60         0.03         0.07         0.69         0.76 
TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A5XZ TCGA-A4-A5Y0 
        0.03         0.10         0.30         0.03         0.07         3.88 
TCGA-A4-A5Y1 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 
        2.86         0.13         9.63        58.45        53.79        13.55 
TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 TCGA-B3-3925 
       30.35        25.08        44.61        19.56         7.33        33.83 
TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B3-A6W5 TCGA-B9-4113 
       10.09        30.58        34.49        12.46         2.79        50.50 
TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 
       28.18        26.40        20.61         0.46         1.15        15.12 
TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A44B TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 
       43.99        22.06         2.10         9.14         6.81         0.16 
TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5880 
        3.35        86.76        19.27         8.88        63.72        43.20 
TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 
       47.80        21.63        40.83        26.04        30.28        26.04 
TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 
       25.35        13.25        10.88         7.66         0.95        11.97 
TCGA-BQ-5893 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 
        7.92       123.62        48.26        96.92        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 
       61.28        50.40        49.84        26.27        20.12        11.28 
TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 
        7.63         7.04         7.17         3.81        11.61        13.61 
TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 
      129.86        35.93        37.55        24.46        13.78         3.75 
TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 
       14.63         3.02        28.80        80.88        51.19        61.02 
TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A7VF TCGA-G7-6789 
       54.90        34.19        19.00        24.89         0.23         4.01 
TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 
       51.78        48.62        11.05        39.25        34.82        25.15 
TCGA-G7-7501 TCGA-G7-7502 TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-8500 TCGA-GL-A4EM 
       14.66        25.84         9.17       194.79         7.76         1.05 
TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U TCGA-IA-A40X TCGA-IA-A40Y TCGA-IZ-8195 
        5.85         2.99        16.80        14.14         2.04        22.26 
TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-J7-8537 TCGA-KV-A6GD TCGA-KV-A6GE 
       21.34         4.80         0.07         0.13         5.26        16.64 
TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 TCGA-MH-A562 
        5.29        13.08        12.85        17.85        14.40         9.60 
TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EB TCGA-P4-A5ED TCGA-PJ-A5Z8 
        4.87        99.78        87.22        84.95        92.58         3.72 
TCGA-PJ-A5Z9 TCGA-Q2-A5QZ 
        5.72         1.87 

  DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE 
                       0.07                        0.03 
  DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE 
                      79.86                      194.79 
  DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE 
                      5.145                      14.515 
[1] "0.1 - 79.9 (5.1)"   "0.0 - 194.8 (14.5)"
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK  6(5Q15) MUTATED"   "DEL PEAK  6(5Q15) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-7997 
"DEL PEAK  6(5Q15) WILD-TYPE"   "DEL PEAK  6(5Q15) MUTATED" 
                 TCGA-A4-8098                  TCGA-A4-8310 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-8311                  TCGA-A4-8515 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-8516                  TCGA-A4-8517 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-8518                  TCGA-A4-8630 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-A48D                  TCGA-A4-A5XZ 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-A5Y0                  TCGA-A4-A5Y1 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-A6HP                  TCGA-AL-3466 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-AL-3467                  TCGA-AL-3468 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-AL-3471                  TCGA-AL-3472 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-AL-3473                  TCGA-AL-7173 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B1-5398                  TCGA-B1-7332 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B3-3925                  TCGA-B3-3926 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B3-4103                  TCGA-B3-4104 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B3-8121                  TCGA-B3-A6W5 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-B9-A44B 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-A5W7                  TCGA-B9-A5W8 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-A5W9                  TCGA-B9-A69E 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5875                  TCGA-BQ-5876 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5877                  TCGA-BQ-5878 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5879                  TCGA-BQ-5880 
  "DEL PEAK  6(5Q15) MUTATED" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5881                  TCGA-BQ-5882 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5883                  TCGA-BQ-5884 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5885                  TCGA-BQ-5886 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5887                  TCGA-BQ-5888 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5889                  TCGA-BQ-5890 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5891                  TCGA-BQ-5892 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5893                  TCGA-BQ-5894 
"DEL PEAK  6(5Q15) WILD-TYPE"   "DEL PEAK  6(5Q15) MUTATED" 
                 TCGA-BQ-7044                  TCGA-BQ-7045 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7046                  TCGA-BQ-7048 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7049                  TCGA-BQ-7050 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7051                  TCGA-BQ-7053 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7055                  TCGA-BQ-7056 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7058                  TCGA-BQ-7059 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7060                  TCGA-BQ-7061 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7062                  TCGA-DW-5560 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-5561                  TCGA-DW-7834 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-7836                  TCGA-DW-7837 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-7838                  TCGA-DW-7839 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-7840                  TCGA-DW-7841 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-7842                  TCGA-DW-7963 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
  "DEL PEAK  6(5Q15) MUTATED" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-F9-A4JJ                  TCGA-F9-A7VF 
  "DEL PEAK  6(5Q15) MUTATED" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-G7-7502                  TCGA-G7-A4TM 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-GL-6846                  TCGA-GL-7773 
"DEL PEAK  6(5Q15) WILD-TYPE"   "DEL PEAK  6(5Q15) MUTATED" 
                 TCGA-GL-7966                  TCGA-GL-8500 
  "DEL PEAK  6(5Q15) MUTATED" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-GL-A4EM                  TCGA-GL-A59R 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-GL-A59T                  TCGA-IA-A40U 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-IA-A40X                  TCGA-IA-A40Y 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-IZ-8195                  TCGA-IZ-8196 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-IZ-A6M8                  TCGA-IZ-A6M9 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-J7-8537                  TCGA-KV-A6GD 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-KV-A6GE                  TCGA-KV-A74V 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-MH-A55W                  TCGA-MH-A55Z 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-MH-A560                  TCGA-MH-A561 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-MH-A562                  TCGA-O9-A75Z 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-P4-A5E6                  TCGA-P4-A5E7 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-P4-A5EA                  TCGA-P4-A5EB 
  "DEL PEAK  6(5Q15) MUTATED" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-P4-A5ED                  TCGA-PJ-A5Z8 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-PJ-A5Z9                  TCGA-Q2-A5QZ 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK  6(5Q15) MUTATED"   "DEL PEAK  6(5Q15) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-7997 
"DEL PEAK  6(5Q15) WILD-TYPE"   "DEL PEAK  6(5Q15) MUTATED" 
                 TCGA-A4-8098                  TCGA-A4-8310 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-8311                  TCGA-A4-8515 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-8516                  TCGA-A4-8517 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-8518                  TCGA-A4-8630 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-A48D                  TCGA-A4-A5XZ 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-A5Y0                  TCGA-A4-A5Y1 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-A6HP                  TCGA-AL-3466 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-AL-3467                  TCGA-AL-3468 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-AL-3471                  TCGA-AL-3472 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-AL-3473                  TCGA-AL-7173 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B1-5398                  TCGA-B1-7332 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B3-3925                  TCGA-B3-3926 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B3-4103                  TCGA-B3-4104 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B3-8121                  TCGA-B3-A6W5 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-B9-A44B 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-A5W7                  TCGA-B9-A5W8 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-A5W9                  TCGA-B9-A69E 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5875                  TCGA-BQ-5876 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5877                  TCGA-BQ-5878 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5879                  TCGA-BQ-5880 
  "DEL PEAK  6(5Q15) MUTATED" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5881                  TCGA-BQ-5882 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5883                  TCGA-BQ-5884 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5885                  TCGA-BQ-5886 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5887                  TCGA-BQ-5888 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5889                  TCGA-BQ-5890 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5891                  TCGA-BQ-5892 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5893                  TCGA-BQ-5894 
"DEL PEAK  6(5Q15) WILD-TYPE"   "DEL PEAK  6(5Q15) MUTATED" 
                 TCGA-BQ-7044                  TCGA-BQ-7045 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7046                  TCGA-BQ-7048 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7049                  TCGA-BQ-7050 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7051                  TCGA-BQ-7053 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7055                  TCGA-BQ-7056 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7058                  TCGA-BQ-7059 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7060                  TCGA-BQ-7061 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7062                  TCGA-DW-5560 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-5561                  TCGA-DW-7834 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-7836                  TCGA-DW-7837 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-7838                  TCGA-DW-7839 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-7840                  TCGA-DW-7841 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-7842                  TCGA-DW-7963 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
  "DEL PEAK  6(5Q15) MUTATED" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-F9-A4JJ                  TCGA-F9-A7VF 
  "DEL PEAK  6(5Q15) MUTATED" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-G7-7502                  TCGA-G7-A4TM 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-GL-6846                  TCGA-GL-7773 
"DEL PEAK  6(5Q15) WILD-TYPE"   "DEL PEAK  6(5Q15) MUTATED" 
                 TCGA-GL-7966                  TCGA-GL-8500 
  "DEL PEAK  6(5Q15) MUTATED" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-GL-A4EM                  TCGA-GL-A59R 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-GL-A59T                  TCGA-IA-A40U 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-IA-A40X                  TCGA-IA-A40Y 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-IZ-8195                  TCGA-IZ-8196 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-IZ-A6M8                  TCGA-IZ-A6M9 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-J7-8537                  TCGA-KV-A6GD 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-KV-A6GE                  TCGA-KV-A74V 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-MH-A55W                  TCGA-MH-A55Z 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-MH-A560                  TCGA-MH-A561 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-MH-A562                  TCGA-O9-A75Z 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-P4-A5E6                  TCGA-P4-A5E7 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-P4-A5EA                  TCGA-P4-A5EB 
  "DEL PEAK  6(5Q15) MUTATED" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-P4-A5ED                  TCGA-PJ-A5Z8 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-PJ-A5Z9                  TCGA-Q2-A5QZ 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK  6(5Q15) MUTATED"   "DEL PEAK  6(5Q15) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-7997 
"DEL PEAK  6(5Q15) WILD-TYPE"   "DEL PEAK  6(5Q15) MUTATED" 
                 TCGA-A4-8098                  TCGA-A4-8310 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-8311                  TCGA-A4-8515 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-8516                  TCGA-A4-8517 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-8518                  TCGA-A4-8630 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-A48D                  TCGA-A4-A5XZ 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-A5Y0                  TCGA-A4-A5Y1 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-A6HP                  TCGA-AL-3466 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-AL-3467                  TCGA-AL-3468 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-AL-3471                  TCGA-AL-3472 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-AL-3473                  TCGA-AL-7173 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B1-5398                  TCGA-B1-7332 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B3-3925                  TCGA-B3-3926 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B3-4103                  TCGA-B3-4104 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B3-8121                  TCGA-B3-A6W5 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-B9-A44B 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-A5W7                  TCGA-B9-A5W8 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-B9-A5W9                  TCGA-B9-A69E 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5875                  TCGA-BQ-5876 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5877                  TCGA-BQ-5878 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5879                  TCGA-BQ-5880 
  "DEL PEAK  6(5Q15) MUTATED" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5881                  TCGA-BQ-5882 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5883                  TCGA-BQ-5884 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5885                  TCGA-BQ-5886 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5887                  TCGA-BQ-5888 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5889                  TCGA-BQ-5890 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5891                  TCGA-BQ-5892 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-5893                  TCGA-BQ-5894 
"DEL PEAK  6(5Q15) WILD-TYPE"   "DEL PEAK  6(5Q15) MUTATED" 
                 TCGA-BQ-7044                  TCGA-BQ-7045 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7046                  TCGA-BQ-7048 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7049                  TCGA-BQ-7050 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7051                  TCGA-BQ-7053 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7055                  TCGA-BQ-7056 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7058                  TCGA-BQ-7059 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7060                  TCGA-BQ-7061 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-BQ-7062                  TCGA-DW-5560 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-5561                  TCGA-DW-7834 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-7836                  TCGA-DW-7837 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-7838                  TCGA-DW-7839 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-7840                  TCGA-DW-7841 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-7842                  TCGA-DW-7963 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
  "DEL PEAK  6(5Q15) MUTATED" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-F9-A4JJ                  TCGA-F9-A7VF 
  "DEL PEAK  6(5Q15) MUTATED" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-G7-7502                  TCGA-G7-A4TM 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-GL-6846                  TCGA-GL-7773 
"DEL PEAK  6(5Q15) WILD-TYPE"   "DEL PEAK  6(5Q15) MUTATED" 
                 TCGA-GL-7966                  TCGA-GL-8500 
  "DEL PEAK  6(5Q15) MUTATED" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-GL-A4EM                  TCGA-GL-A59R 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-GL-A59T                  TCGA-IA-A40U 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-IA-A40X                  TCGA-IA-A40Y 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-IZ-8195                  TCGA-IZ-8196 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-IZ-A6M8                  TCGA-IZ-A6M9 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-J7-8537                  TCGA-KV-A6GD 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-KV-A6GE                  TCGA-KV-A74V 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-MH-A55W                  TCGA-MH-A55Z 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-MH-A560                  TCGA-MH-A561 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-MH-A562                  TCGA-O9-A75Z 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-P4-A5E6                  TCGA-P4-A5E7 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-P4-A5EA                  TCGA-P4-A5EB 
  "DEL PEAK  6(5Q15) MUTATED" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-P4-A5ED                  TCGA-PJ-A5Z8 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-PJ-A5Z9                  TCGA-Q2-A5QZ 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
[1] "hr=" "4.8"
D12V2, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK  6(5Q15) MUTATED         3        0         6        1
  DEL PEAK  6(5Q15) WILD-TYPE      92       11        31        9
D12V3, multiclass
           clus
vv          DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE
  STAGE I                           3                          92
  STAGE II                          0                          11
  STAGE III                         6                          31
  STAGE IV                          1                           9
                             vv
clus                          T1 T2 T3+T4
  DEL PEAK  6(5Q15) MUTATED    3  0     8
  DEL PEAK  6(5Q15) WILD-TYPE 99 17    36
D12V4, multiclass
       clus
vv      DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE
  T1                            3                          99
  T2                            0                          17
  T3+T4                         8                          36
                             vv
clus                          N0 N1 N2
  DEL PEAK  6(5Q15) MUTATED    1  4  0
  DEL PEAK  6(5Q15) WILD-TYPE 26 12  4
D12V5, multiclass
    clus
vv   DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE
  N0                         1                          26
  N1                         4                          12
  N2                         0                           4
                             vv
clus                          M0 M1 MX
  DEL PEAK  6(5Q15) MUTATED    3  1  6
  DEL PEAK  6(5Q15) WILD-TYPE 59  5 76
D12V6, multiclass
    clus
vv   DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE
  M0                         3                          59
  M1                         1                           5
  MX                         6                          76
D12V7, binary
                             cls
clus                            0   1
  DEL PEAK  6(5Q15) MUTATED     6   5
  DEL PEAK  6(5Q15) WILD-TYPE  43 109
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  6(5Q15) MUTATED      6    5
  DEL PEAK  6(5Q15) WILD-TYPE   43  109
        clus
vv       DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE
  FEMALE                         6                          43
  MALE                           5                         109
D12V8, continuous
[1] "Remove cluster labels:"    "DEL PEAK  6(5Q15) MUTATED"
clus
  DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE 
                          1                          38 
                 TCGA-A4-7828                  TCGA-A4-8310 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-8311                  TCGA-A4-8312 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-8518                  TCGA-A4-8630 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-A4ZT                  TCGA-A4-A57E 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-A5DU                  TCGA-A4-A5XZ 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-A4-A6HP                  TCGA-AL-3466 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-DW-7963                  TCGA-EV-5901 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-G7-6790                  TCGA-G7-6793 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-G7-6796                  TCGA-G7-6797 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-G7-7501                  TCGA-G7-7502 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-G7-A4TM                  TCGA-IA-A40U 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-IA-A40X                  TCGA-IA-A40Y 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-J7-8537                  TCGA-Q2-A5QZ 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
D12V9, continuous
[1] "Remove cluster labels:"    "DEL PEAK  6(5Q15) MUTATED"
clus
  DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE 
                          1                           8 
                 TCGA-B9-A44B                  TCGA-B9-A69E 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-GL-A59T                  TCGA-IA-A40U 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-P4-A5E7                  TCGA-P4-A5EB 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-PJ-A5Z9                  TCGA-Q2-A5QZ 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
D12V10, continuous
[1] "Remove cluster labels:"    "DEL PEAK  6(5Q15) MUTATED"
clus
  DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE 
                          1                           5 
                 TCGA-AL-3472                  TCGA-B9-A69E 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-IA-A40U                  TCGA-PJ-A5Z9 
"DEL PEAK  6(5Q15) WILD-TYPE" "DEL PEAK  6(5Q15) WILD-TYPE" 
                 TCGA-Q2-A5QZ 
"DEL PEAK  6(5Q15) WILD-TYPE" 

Clustering(13) Variable = DEL PEAK  7(5Q35.2) MUTATION ANALYSIS
D13V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  7(5Q35.2) MUTATED     6   3
  DEL PEAK  7(5Q35.2) WILD-TYPE 127  14
  DEL PEAK  7(5Q35.2) MUTATED DEL PEAK  7(5Q35.2) WILD-TYPE 
                            9                           141 
  DEL PEAK  7(5Q35.2) MUTATED DEL PEAK  7(5Q35.2) WILD-TYPE 
                            3                            14 
$`DEL PEAK  7(5Q35.2) MUTATED`
TCGA-A4-7286 TCGA-A4-7287 TCGA-B3-4104 TCGA-BQ-5879 TCGA-BQ-5894 TCGA-DZ-6131 
       18.21         0.69        34.49        22.92         2.76        79.86 
TCGA-F9-A4JJ TCGA-GL-7966 TCGA-P4-A5EA 
        3.19         3.68         6.61 

$`DEL PEAK  7(5Q35.2) WILD-TYPE`
TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 
       16.21         0.10        35.18        19.13         0.89         0.23 
TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 TCGA-A4-8515 
        1.61         0.07         4.60         0.03         0.07         0.69 
TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A5XZ 
        0.76         0.03         0.10         0.30         0.03         0.07 
TCGA-A4-A5Y0 TCGA-A4-A5Y1 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 
        3.88         2.86         0.13         9.63        58.45        53.79 
TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 
       13.55        30.35        25.08        44.61        19.56         7.33 
TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-8121 TCGA-B3-A6W5 TCGA-B9-4113 
       33.83        10.09        30.58        12.46         2.79        50.50 
TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 
       28.18        26.40        20.61         0.46         1.15        15.12 
TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A44B TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 
       43.99        22.06         2.10         9.14         6.81         0.16 
TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5880 
        3.35        86.76        19.27         8.88        63.72        43.20 
TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 
       47.80        21.63        40.83        26.04        30.28        26.04 
TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 
       25.35        13.25        10.88         7.66         0.95        11.97 
TCGA-BQ-5893 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 
        7.92       123.62        48.26        96.92        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 
       61.28        50.40        49.84        26.27        20.12        11.28 
TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 
        7.63         7.04         7.17         3.81        11.61        13.61 
TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 
      129.86        35.93        37.55        24.46        13.78         3.75 
TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 
       14.63         3.02        28.80        80.88        51.19        61.02 
TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A7VF TCGA-G7-6789 
       54.90        34.19        19.00        24.89         0.23         4.01 
TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 
       51.78        48.62        11.05        39.25        34.82        25.15 
TCGA-G7-7501 TCGA-G7-7502 TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 TCGA-GL-8500 
       14.66        25.84         9.17       194.79        12.92         7.76 
TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U TCGA-IA-A40X TCGA-IA-A40Y 
        1.05         5.85         2.99        16.80        14.14         2.04 
TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-J7-8537 TCGA-KV-A6GD 
       22.26        21.34         4.80         0.07         0.13         5.26 
TCGA-KV-A6GE TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 
       16.64         5.29        13.08        12.85        17.85        14.40 
TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EB TCGA-P4-A5ED 
        9.60         4.87        99.78        87.22        84.95        92.58 
TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 TCGA-Q2-A5QZ 
        3.72         5.72         1.87 

  DEL PEAK  7(5Q35.2) MUTATED DEL PEAK  7(5Q35.2) WILD-TYPE 
                         0.69                          0.03 
  DEL PEAK  7(5Q35.2) MUTATED DEL PEAK  7(5Q35.2) WILD-TYPE 
                        79.86                        194.79 
  DEL PEAK  7(5Q35.2) MUTATED DEL PEAK  7(5Q35.2) WILD-TYPE 
                         6.61                         14.14 
[1] "0.7 - 79.9 (6.6)"   "0.0 - 194.8 (14.1)"
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK  7(5Q35.2) MUTATED"   "DEL PEAK  7(5Q35.2) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  7(5Q35.2) WILD-TYPE"   "DEL PEAK  7(5Q35.2) MUTATED" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
  "DEL PEAK  7(5Q35.2) MUTATED" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK  7(5Q35.2) WILD-TYPE"   "DEL PEAK  7(5Q35.2) MUTATED" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  7(5Q35.2) MUTATED" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
  "DEL PEAK  7(5Q35.2) MUTATED" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
  "DEL PEAK  7(5Q35.2) MUTATED" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
  "DEL PEAK  7(5Q35.2) MUTATED" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK  7(5Q35.2) MUTATED"   "DEL PEAK  7(5Q35.2) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  7(5Q35.2) WILD-TYPE"   "DEL PEAK  7(5Q35.2) MUTATED" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
  "DEL PEAK  7(5Q35.2) MUTATED" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK  7(5Q35.2) WILD-TYPE"   "DEL PEAK  7(5Q35.2) MUTATED" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  7(5Q35.2) MUTATED" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
  "DEL PEAK  7(5Q35.2) MUTATED" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
  "DEL PEAK  7(5Q35.2) MUTATED" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
  "DEL PEAK  7(5Q35.2) MUTATED" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK  7(5Q35.2) MUTATED"   "DEL PEAK  7(5Q35.2) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  7(5Q35.2) WILD-TYPE"   "DEL PEAK  7(5Q35.2) MUTATED" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
  "DEL PEAK  7(5Q35.2) MUTATED" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK  7(5Q35.2) WILD-TYPE"   "DEL PEAK  7(5Q35.2) MUTATED" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  7(5Q35.2) MUTATED" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
  "DEL PEAK  7(5Q35.2) MUTATED" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
  "DEL PEAK  7(5Q35.2) MUTATED" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
  "DEL PEAK  7(5Q35.2) MUTATED" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
[1] "hr=" "4.6"
D13V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK  7(5Q35.2) MUTATED         1        1         6        1
  DEL PEAK  7(5Q35.2) WILD-TYPE      94       10        31        9
D13V3, multiclass
           clus
vv          DEL PEAK  7(5Q35.2) MUTATED DEL PEAK  7(5Q35.2) WILD-TYPE
  STAGE I                             1                            94
  STAGE II                            1                            10
  STAGE III                           6                            31
  STAGE IV                            1                             9
                               vv
clus                             T1  T2 T3+T4
  DEL PEAK  7(5Q35.2) MUTATED     1   1     8
  DEL PEAK  7(5Q35.2) WILD-TYPE 101  16    36
D13V4, multiclass
       clus
vv      DEL PEAK  7(5Q35.2) MUTATED DEL PEAK  7(5Q35.2) WILD-TYPE
  T1                              1                           101
  T2                              1                            16
  T3+T4                           8                            36
                               vv
clus                            N0 N1 N2
  DEL PEAK  7(5Q35.2) MUTATED    1  4  0
  DEL PEAK  7(5Q35.2) WILD-TYPE 26 12  4
D13V5, multiclass
    clus
vv   DEL PEAK  7(5Q35.2) MUTATED DEL PEAK  7(5Q35.2) WILD-TYPE
  N0                           1                            26
  N1                           4                            12
  N2                           0                             4
                               vv
clus                            M0 M1 MX
  DEL PEAK  7(5Q35.2) MUTATED    3  1  5
  DEL PEAK  7(5Q35.2) WILD-TYPE 59  5 77
D13V6, multiclass
    clus
vv   DEL PEAK  7(5Q35.2) MUTATED DEL PEAK  7(5Q35.2) WILD-TYPE
  M0                           3                            59
  M1                           1                             5
  MX                           5                            77
D13V7, binary
                               cls
clus                              0   1
  DEL PEAK  7(5Q35.2) MUTATED     6   4
  DEL PEAK  7(5Q35.2) WILD-TYPE  43 110
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(5Q35.2) MUTATED      6    4
  DEL PEAK  7(5Q35.2) WILD-TYPE   43  110
        clus
vv       DEL PEAK  7(5Q35.2) MUTATED DEL PEAK  7(5Q35.2) WILD-TYPE
  FEMALE                           6                            43
  MALE                             4                           110
D13V8, continuous
[1] "Remove cluster labels:"      "DEL PEAK  7(5Q35.2) MUTATED"
clus
  DEL PEAK  7(5Q35.2) MUTATED DEL PEAK  7(5Q35.2) WILD-TYPE 
                            1                            38 
                   TCGA-A4-7828                    TCGA-A4-8310 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8312 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-A4ZT                    TCGA-A4-A57E 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-A5DU                    TCGA-A4-A5XZ 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7963                    TCGA-EV-5901 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6790                    TCGA-G7-6793 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6796                    TCGA-G7-6797 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-G7-7501                    TCGA-G7-7502 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-G7-A4TM                    TCGA-IA-A40U 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-Q2-A5QZ 
"DEL PEAK  7(5Q35.2) WILD-TYPE" "DEL PEAK  7(5Q35.2) WILD-TYPE" 
D13V9, continuous
D13V10, continuous

Clustering(14) Variable = DEL PEAK  8(6Q21) MUTATION ANALYSIS
D14V1, survival
                             sevent
clus2                           0   1
  DEL PEAK  8(6Q21) MUTATED    12   3
  DEL PEAK  8(6Q21) WILD-TYPE 121  14
  DEL PEAK  8(6Q21) MUTATED DEL PEAK  8(6Q21) WILD-TYPE 
                         15                         135 
  DEL PEAK  8(6Q21) MUTATED DEL PEAK  8(6Q21) WILD-TYPE 
                          3                          14 
$`DEL PEAK  8(6Q21) MUTATED`
TCGA-A4-7286 TCGA-B3-3926 TCGA-B9-A44B TCGA-BQ-5875 TCGA-BQ-5882 TCGA-BQ-5888 
       18.21        10.09         2.10        86.76        21.63        13.25 
TCGA-BQ-7056 TCGA-EV-5902 TCGA-G7-6789 TCGA-G7-6793 TCGA-G7-7502 TCGA-GL-7966 
       20.12        19.00         4.01        11.05        25.84         3.68 
TCGA-J7-8537 TCGA-P4-A5EB TCGA-Q2-A5QZ 
        0.13        84.95         1.87 

$`DEL PEAK  8(6Q21) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 
        0.69        16.21         0.10        35.18        19.13         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 
        0.23         1.61         0.07         4.60         0.03         0.07 
TCGA-A4-8515 TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D 
        0.69         0.76         0.03         0.10         0.30         0.03 
TCGA-A4-A5XZ TCGA-A4-A5Y0 TCGA-A4-A5Y1 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 
        0.07         3.88         2.86         0.13         9.63        58.45 
TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 
       53.79        13.55        30.35        25.08        44.61        19.56 
TCGA-B1-7332 TCGA-B3-3925 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B3-A6W5 
        7.33        33.83        30.58        34.49        12.46         2.79 
TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 
       50.50        28.18        26.40        20.61         0.46         1.15 
TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 
       15.12        43.99        22.06         9.14         6.81         0.16 
TCGA-B9-A69E TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 
        3.35        19.27         8.88        63.72        22.92        43.20 
TCGA-BQ-5881 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 
       47.80        40.83        26.04        30.28        26.04        25.35 
TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 
       10.88         7.66         0.95        11.97         7.92         2.76 
TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 
      123.62        48.26        96.92        93.34        44.84        61.28 
TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 
       50.40        49.84        26.27        11.28         7.63         7.04 
TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 
        7.17         3.81        11.61        13.61       129.86        35.93 
TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 
       37.55        24.46        13.78         3.75        14.63         3.02 
TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 
       28.80        79.86        80.88        51.19        61.02        54.90 
TCGA-EV-5901 TCGA-EV-5903 TCGA-F9-A4JJ TCGA-F9-A7VF TCGA-G7-6790 TCGA-G7-6792 
       34.19        24.89         3.19         0.23        51.78        48.62 
TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-A4TM TCGA-GL-6846 
       39.25        34.82        25.15        14.66         9.17       194.79 
TCGA-GL-7773 TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U 
       12.92         7.76         1.05         5.85         2.99        16.80 
TCGA-IA-A40X TCGA-IA-A40Y TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 
       14.14         2.04        22.26        21.34         4.80         0.07 
TCGA-KV-A6GD TCGA-KV-A6GE TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 
        5.26        16.64         5.29        13.08        12.85        17.85 
TCGA-MH-A561 TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EA 
       14.40         9.60         4.87        99.78        87.22         6.61 
TCGA-P4-A5ED TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 
       92.58         3.72         5.72 

  DEL PEAK  8(6Q21) MUTATED DEL PEAK  8(6Q21) WILD-TYPE 
                       0.13                        0.03 
  DEL PEAK  8(6Q21) MUTATED DEL PEAK  8(6Q21) WILD-TYPE 
                      86.76                      194.79 
  DEL PEAK  8(6Q21) MUTATED DEL PEAK  8(6Q21) WILD-TYPE 
                      13.25                       14.14 
[1] "0.1 - 86.8 (13.2)"  "0.0 - 194.8 (14.1)"
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-7997 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-8098                  TCGA-A4-8310 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-8311                  TCGA-A4-8515 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-8516                  TCGA-A4-8517 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-8518                  TCGA-A4-8630 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-A48D                  TCGA-A4-A5XZ 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-A5Y0                  TCGA-A4-A5Y1 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-A6HP                  TCGA-AL-3466 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-AL-3467                  TCGA-AL-3468 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-AL-3471                  TCGA-AL-3472 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-AL-3473                  TCGA-AL-7173 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B1-5398                  TCGA-B1-7332 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B3-3925                  TCGA-B3-3926 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-B3-4103                  TCGA-B3-4104 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B3-8121                  TCGA-B3-A6W5 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-B9-A44B 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-B9-A5W7                  TCGA-B9-A5W8 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B9-A5W9                  TCGA-B9-A69E 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5875                  TCGA-BQ-5876 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5877                  TCGA-BQ-5878 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5879                  TCGA-BQ-5880 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5881                  TCGA-BQ-5882 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-BQ-5883                  TCGA-BQ-5884 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5885                  TCGA-BQ-5886 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5887                  TCGA-BQ-5888 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-BQ-5889                  TCGA-BQ-5890 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5891                  TCGA-BQ-5892 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5893                  TCGA-BQ-5894 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7044                  TCGA-BQ-7045 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7046                  TCGA-BQ-7048 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7049                  TCGA-BQ-7050 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7051                  TCGA-BQ-7053 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7055                  TCGA-BQ-7056 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-BQ-7058                  TCGA-BQ-7059 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7060                  TCGA-BQ-7061 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7062                  TCGA-DW-5560 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DW-5561                  TCGA-DW-7834 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DW-7836                  TCGA-DW-7837 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DW-7838                  TCGA-DW-7839 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DW-7840                  TCGA-DW-7841 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DW-7842                  TCGA-DW-7963 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-F9-A4JJ                  TCGA-F9-A7VF 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G7-7502                  TCGA-G7-A4TM 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GL-6846                  TCGA-GL-7773 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GL-7966                  TCGA-GL-8500 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GL-A4EM                  TCGA-GL-A59R 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GL-A59T                  TCGA-IA-A40U 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-IA-A40X                  TCGA-IA-A40Y 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-IZ-8195                  TCGA-IZ-8196 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-IZ-A6M8                  TCGA-IZ-A6M9 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-J7-8537                  TCGA-KV-A6GD 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-KV-A6GE                  TCGA-KV-A74V 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-MH-A55W                  TCGA-MH-A55Z 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-MH-A560                  TCGA-MH-A561 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-MH-A562                  TCGA-O9-A75Z 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-P4-A5E6                  TCGA-P4-A5E7 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-P4-A5EA                  TCGA-P4-A5EB 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-P4-A5ED                  TCGA-PJ-A5Z8 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-PJ-A5Z9                  TCGA-Q2-A5QZ 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-7997 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-8098                  TCGA-A4-8310 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-8311                  TCGA-A4-8515 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-8516                  TCGA-A4-8517 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-8518                  TCGA-A4-8630 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-A48D                  TCGA-A4-A5XZ 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-A5Y0                  TCGA-A4-A5Y1 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-A6HP                  TCGA-AL-3466 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-AL-3467                  TCGA-AL-3468 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-AL-3471                  TCGA-AL-3472 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-AL-3473                  TCGA-AL-7173 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B1-5398                  TCGA-B1-7332 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B3-3925                  TCGA-B3-3926 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-B3-4103                  TCGA-B3-4104 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B3-8121                  TCGA-B3-A6W5 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-B9-A44B 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-B9-A5W7                  TCGA-B9-A5W8 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B9-A5W9                  TCGA-B9-A69E 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5875                  TCGA-BQ-5876 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5877                  TCGA-BQ-5878 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5879                  TCGA-BQ-5880 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5881                  TCGA-BQ-5882 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-BQ-5883                  TCGA-BQ-5884 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5885                  TCGA-BQ-5886 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5887                  TCGA-BQ-5888 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-BQ-5889                  TCGA-BQ-5890 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5891                  TCGA-BQ-5892 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5893                  TCGA-BQ-5894 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7044                  TCGA-BQ-7045 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7046                  TCGA-BQ-7048 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7049                  TCGA-BQ-7050 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7051                  TCGA-BQ-7053 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7055                  TCGA-BQ-7056 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-BQ-7058                  TCGA-BQ-7059 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7060                  TCGA-BQ-7061 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7062                  TCGA-DW-5560 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DW-5561                  TCGA-DW-7834 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DW-7836                  TCGA-DW-7837 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DW-7838                  TCGA-DW-7839 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DW-7840                  TCGA-DW-7841 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DW-7842                  TCGA-DW-7963 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-F9-A4JJ                  TCGA-F9-A7VF 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G7-7502                  TCGA-G7-A4TM 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GL-6846                  TCGA-GL-7773 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GL-7966                  TCGA-GL-8500 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GL-A4EM                  TCGA-GL-A59R 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GL-A59T                  TCGA-IA-A40U 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-IA-A40X                  TCGA-IA-A40Y 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-IZ-8195                  TCGA-IZ-8196 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-IZ-A6M8                  TCGA-IZ-A6M9 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-J7-8537                  TCGA-KV-A6GD 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-KV-A6GE                  TCGA-KV-A74V 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-MH-A55W                  TCGA-MH-A55Z 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-MH-A560                  TCGA-MH-A561 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-MH-A562                  TCGA-O9-A75Z 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-P4-A5E6                  TCGA-P4-A5E7 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-P4-A5EA                  TCGA-P4-A5EB 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-P4-A5ED                  TCGA-PJ-A5Z8 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-PJ-A5Z9                  TCGA-Q2-A5QZ 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-7997 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-8098                  TCGA-A4-8310 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-8311                  TCGA-A4-8515 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-8516                  TCGA-A4-8517 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-8518                  TCGA-A4-8630 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-A48D                  TCGA-A4-A5XZ 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-A5Y0                  TCGA-A4-A5Y1 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-A4-A6HP                  TCGA-AL-3466 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-AL-3467                  TCGA-AL-3468 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-AL-3471                  TCGA-AL-3472 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-AL-3473                  TCGA-AL-7173 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B1-5398                  TCGA-B1-7332 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B3-3925                  TCGA-B3-3926 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-B3-4103                  TCGA-B3-4104 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B3-8121                  TCGA-B3-A6W5 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-B9-A44B 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-B9-A5W7                  TCGA-B9-A5W8 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B9-A5W9                  TCGA-B9-A69E 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5875                  TCGA-BQ-5876 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5877                  TCGA-BQ-5878 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5879                  TCGA-BQ-5880 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5881                  TCGA-BQ-5882 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-BQ-5883                  TCGA-BQ-5884 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5885                  TCGA-BQ-5886 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5887                  TCGA-BQ-5888 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-BQ-5889                  TCGA-BQ-5890 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5891                  TCGA-BQ-5892 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-5893                  TCGA-BQ-5894 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7044                  TCGA-BQ-7045 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7046                  TCGA-BQ-7048 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7049                  TCGA-BQ-7050 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7051                  TCGA-BQ-7053 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7055                  TCGA-BQ-7056 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-BQ-7058                  TCGA-BQ-7059 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7060                  TCGA-BQ-7061 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BQ-7062                  TCGA-DW-5560 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DW-5561                  TCGA-DW-7834 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DW-7836                  TCGA-DW-7837 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DW-7838                  TCGA-DW-7839 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DW-7840                  TCGA-DW-7841 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DW-7842                  TCGA-DW-7963 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-F9-A4JJ                  TCGA-F9-A7VF 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G7-7502                  TCGA-G7-A4TM 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GL-6846                  TCGA-GL-7773 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GL-7966                  TCGA-GL-8500 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GL-A4EM                  TCGA-GL-A59R 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GL-A59T                  TCGA-IA-A40U 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-IA-A40X                  TCGA-IA-A40Y 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-IZ-8195                  TCGA-IZ-8196 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-IZ-A6M8                  TCGA-IZ-A6M9 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-J7-8537                  TCGA-KV-A6GD 
  "DEL PEAK  8(6Q21) MUTATED" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-KV-A6GE                  TCGA-KV-A74V 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-MH-A55W                  TCGA-MH-A55Z 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-MH-A560                  TCGA-MH-A561 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-MH-A562                  TCGA-O9-A75Z 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-P4-A5E6                  TCGA-P4-A5E7 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-P4-A5EA                  TCGA-P4-A5EB 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
                 TCGA-P4-A5ED                  TCGA-PJ-A5Z8 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-PJ-A5Z9                  TCGA-Q2-A5QZ 
"DEL PEAK  8(6Q21) WILD-TYPE"   "DEL PEAK  8(6Q21) MUTATED" 
[1] "hr=" "2.2"
D14V2, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK  8(6Q21) MUTATED         5        0         8        2
  DEL PEAK  8(6Q21) WILD-TYPE      90       11        29        8
D14V3, multiclass
           clus
vv          DEL PEAK  8(6Q21) MUTATED DEL PEAK  8(6Q21) WILD-TYPE
  STAGE I                           5                          90
  STAGE II                          0                          11
  STAGE III                         8                          29
  STAGE IV                          2                           8
                             vv
clus                          T1 T2 T3+T4
  DEL PEAK  8(6Q21) MUTATED    5  0    11
  DEL PEAK  8(6Q21) WILD-TYPE 97 17    33
D14V4, multiclass
       clus
vv      DEL PEAK  8(6Q21) MUTATED DEL PEAK  8(6Q21) WILD-TYPE
  T1                            5                          97
  T2                            0                          17
  T3+T4                        11                          33
                             vv
clus                          N0 N1 N2
  DEL PEAK  8(6Q21) MUTATED    3  2  2
  DEL PEAK  8(6Q21) WILD-TYPE 24 14  2
D14V5, multiclass
    clus
vv   DEL PEAK  8(6Q21) MUTATED DEL PEAK  8(6Q21) WILD-TYPE
  N0                         3                          24
  N1                         2                          14
  N2                         2                           2
                             vv
clus                          M0 M1 MX
  DEL PEAK  8(6Q21) MUTATED    8  0  6
  DEL PEAK  8(6Q21) WILD-TYPE 54  6 76
D14V6, multiclass
    clus
vv   DEL PEAK  8(6Q21) MUTATED DEL PEAK  8(6Q21) WILD-TYPE
  M0                         8                          54
  M1                         0                           6
  MX                         6                          76
D14V7, binary
                             cls
clus                            0   1
  DEL PEAK  8(6Q21) MUTATED    10   6
  DEL PEAK  8(6Q21) WILD-TYPE  39 108
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  8(6Q21) MUTATED     10    6
  DEL PEAK  8(6Q21) WILD-TYPE   39  108
        clus
vv       DEL PEAK  8(6Q21) MUTATED DEL PEAK  8(6Q21) WILD-TYPE
  FEMALE                        10                          39
  MALE                           6                         108
D14V8, continuous
D14V9, continuous
D14V10, continuous
[1] "Remove cluster labels:"    "DEL PEAK  8(6Q21) MUTATED"
clus
  DEL PEAK  8(6Q21) MUTATED DEL PEAK  8(6Q21) WILD-TYPE 
                          1                           5 
                 TCGA-AL-3472                  TCGA-B9-A69E 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GL-7773                  TCGA-IA-A40U 
"DEL PEAK  8(6Q21) WILD-TYPE" "DEL PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-PJ-A5Z9 
"DEL PEAK  8(6Q21) WILD-TYPE" 

Clustering(15) Variable = DEL PEAK  9(6Q22.31) MUTATION ANALYSIS
D15V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  9(6Q22.31) MUTATED    12   4
  DEL PEAK  9(6Q22.31) WILD-TYPE 121  13
  DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE 
                            16                            134 
  DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE 
                             4                             13 
$`DEL PEAK  9(6Q22.31) MUTATED`
TCGA-A4-7286 TCGA-B3-3926 TCGA-B9-A44B TCGA-BQ-5875 TCGA-BQ-5882 TCGA-BQ-5888 
       18.21        10.09         2.10        86.76        21.63        13.25 
TCGA-BQ-5889 TCGA-BQ-7056 TCGA-EV-5902 TCGA-G7-6789 TCGA-G7-6793 TCGA-G7-7502 
       10.88        20.12        19.00         4.01        11.05        25.84 
TCGA-GL-7966 TCGA-J7-8537 TCGA-P4-A5EB TCGA-Q2-A5QZ 
        3.68         0.13        84.95         1.87 

$`DEL PEAK  9(6Q22.31) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 
        0.69        16.21         0.10        35.18        19.13         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 
        0.23         1.61         0.07         4.60         0.03         0.07 
TCGA-A4-8515 TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D 
        0.69         0.76         0.03         0.10         0.30         0.03 
TCGA-A4-A5XZ TCGA-A4-A5Y0 TCGA-A4-A5Y1 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 
        0.07         3.88         2.86         0.13         9.63        58.45 
TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 
       53.79        13.55        30.35        25.08        44.61        19.56 
TCGA-B1-7332 TCGA-B3-3925 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B3-A6W5 
        7.33        33.83        30.58        34.49        12.46         2.79 
TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 
       50.50        28.18        26.40        20.61         0.46         1.15 
TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 
       15.12        43.99        22.06         9.14         6.81         0.16 
TCGA-B9-A69E TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 
        3.35        19.27         8.88        63.72        22.92        43.20 
TCGA-BQ-5881 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 
       47.80        40.83        26.04        30.28        26.04        25.35 
TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 
        7.66         0.95        11.97         7.92         2.76       123.62 
TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 
       48.26        96.92        93.34        44.84        61.28        50.40 
TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 
       49.84        26.27        11.28         7.63         7.04         7.17 
TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 
        3.81        11.61        13.61       129.86        35.93        37.55 
TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 
       24.46        13.78         3.75        14.63         3.02        28.80 
TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 
       79.86        80.88        51.19        61.02        54.90        34.19 
TCGA-EV-5903 TCGA-F9-A4JJ TCGA-F9-A7VF TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6795 
       24.89         3.19         0.23        51.78        48.62        39.25 
TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 
       34.82        25.15        14.66         9.17       194.79        12.92 
TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U TCGA-IA-A40X 
        7.76         1.05         5.85         2.99        16.80        14.14 
TCGA-IA-A40Y TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-KV-A6GD 
        2.04        22.26        21.34         4.80         0.07         5.26 
TCGA-KV-A6GE TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 
       16.64         5.29        13.08        12.85        17.85        14.40 
TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EA TCGA-P4-A5ED 
        9.60         4.87        99.78        87.22         6.61        92.58 
TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 
        3.72         5.72 

  DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE 
                          0.13                           0.03 
  DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE 
                         86.76                         194.79 
  DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE 
                         12.15                          14.27 
[1] "0.1 - 86.8 (12.2)"  "0.0 - 194.8 (14.3)"
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
[1] "hr=" "3"  
D15V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK  9(6Q22.31) MUTATED         5        0         8        3
  DEL PEAK  9(6Q22.31) WILD-TYPE      90       11        29        7
D15V3, multiclass
           clus
vv          DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE
  STAGE I                              5                             90
  STAGE II                             0                             11
  STAGE III                            8                             29
  STAGE IV                             3                              7
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK  9(6Q22.31) MUTATED    5  0    12
  DEL PEAK  9(6Q22.31) WILD-TYPE 97 17    32
D15V4, multiclass
       clus
vv      DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE
  T1                               5                             97
  T2                               0                             17
  T3+T4                           12                             32
                                vv
clus                             N0 N1 N2
  DEL PEAK  9(6Q22.31) MUTATED    3  3  2
  DEL PEAK  9(6Q22.31) WILD-TYPE 24 13  2
D15V5, multiclass
    clus
vv   DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE
  N0                            3                             24
  N1                            3                             13
  N2                            2                              2
                                vv
clus                             M0 M1 MX
  DEL PEAK  9(6Q22.31) MUTATED    8  1  6
  DEL PEAK  9(6Q22.31) WILD-TYPE 54  5 76
D15V6, multiclass
    clus
vv   DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE
  M0                            8                             54
  M1                            1                              5
  MX                            6                             76
D15V7, binary
                                cls
clus                               0   1
  DEL PEAK  9(6Q22.31) MUTATED    10   7
  DEL PEAK  9(6Q22.31) WILD-TYPE  39 107
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(6Q22.31) MUTATED     10    7
  DEL PEAK  9(6Q22.31) WILD-TYPE   39  107
        clus
vv       DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE
  FEMALE                           10                             39
  MALE                              7                            107
D15V8, continuous
D15V9, continuous
D15V10, continuous
[1] "Remove cluster labels:"       "DEL PEAK  9(6Q22.31) MUTATED"
clus
  DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE 
                             1                              5 
                    TCGA-AL-3472                     TCGA-B9-A69E 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-GL-7773                     TCGA-IA-A40U 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-PJ-A5Z9 
"DEL PEAK  9(6Q22.31) WILD-TYPE" 

Clustering(16) Variable = DEL PEAK 10(9P21.3) MUTATION ANALYSIS
D16V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 10(9P21.3) MUTATED    15   7
  DEL PEAK 10(9P21.3) WILD-TYPE 118  10
  DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE 
                           22                           128 
  DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE 
                            7                            10 
$`DEL PEAK 10(9P21.3) MUTATED`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-A5Y1 TCGA-AL-3466 TCGA-B3-3926 TCGA-B9-4116 
       18.21         0.69         2.86         9.63        10.09        20.61 
TCGA-B9-A69E TCGA-BQ-5877 TCGA-BQ-5879 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-7048 
        3.35         8.88        22.92        13.25        10.88        93.34 
TCGA-BQ-7056 TCGA-DZ-6131 TCGA-G7-6789 TCGA-G7-6793 TCGA-G7-6796 TCGA-G7-7501 
       20.12        79.86         4.01        11.05        34.82        14.66 
TCGA-GL-7966 TCGA-IA-A40Y TCGA-J7-8537 TCGA-P4-A5EA 
        3.68         2.04         0.13         6.61 

$`DEL PEAK 10(9P21.3) WILD-TYPE`
TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 
       16.21         0.10        35.18        19.13         0.89         0.23 
TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 TCGA-A4-8515 
        1.61         0.07         4.60         0.03         0.07         0.69 
TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A5XZ 
        0.76         0.03         0.10         0.30         0.03         0.07 
TCGA-A4-A5Y0 TCGA-A4-A6HP TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 
        3.88         0.13        58.45        53.79        13.55        30.35 
TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 TCGA-B3-3925 TCGA-B3-4103 
       25.08        44.61        19.56         7.33        33.83        30.58 
TCGA-B3-4104 TCGA-B3-8121 TCGA-B3-A6W5 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 
       34.49        12.46         2.79        50.50        28.18        26.40 
TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A44B 
        0.46         1.15        15.12        43.99        22.06         2.10 
TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5878 
        9.14         6.81         0.16        86.76        19.27        63.72 
TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 
       43.20        47.80        21.63        40.83        26.04        30.28 
TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 
       26.04        25.35         7.66         0.95        11.97         7.92 
TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7049 TCGA-BQ-7050 
        2.76       123.62        48.26        96.92        44.84        61.28 
TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 
       50.40        49.84        26.27        11.28         7.63         7.04 
TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 
        7.17         3.81        11.61        13.61       129.86        35.93 
TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 
       37.55        24.46        13.78         3.75        14.63         3.02 
TCGA-DW-7963 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 
       28.80        80.88        51.19        61.02        54.90        34.19 
TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A4JJ TCGA-F9-A7VF TCGA-G7-6790 TCGA-G7-6792 
       19.00        24.89         3.19         0.23        51.78        48.62 
TCGA-G7-6795 TCGA-G7-6797 TCGA-G7-7502 TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 
       39.25        25.15        25.84         9.17       194.79        12.92 
TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U TCGA-IA-A40X 
        7.76         1.05         5.85         2.99        16.80        14.14 
TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-KV-A6GD TCGA-KV-A6GE 
       22.26        21.34         4.80         0.07         5.26        16.64 
TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 TCGA-MH-A562 
        5.29        13.08        12.85        17.85        14.40         9.60 
TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EB TCGA-P4-A5ED TCGA-PJ-A5Z8 
        4.87        99.78        87.22        84.95        92.58         3.72 
TCGA-PJ-A5Z9 TCGA-Q2-A5QZ 
        5.72         1.87 

  DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE 
                        93.34                        194.79 
  DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE 
                       10.485                        14.875 
[1] "0.1 - 93.3 (10.5)"  "0.0 - 194.8 (14.9)"
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK 10(9P21.3) MUTATED"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK 10(9P21.3) MUTATED"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK 10(9P21.3) MUTATED"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-A4-7997 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-8098                    TCGA-A4-8310 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-8311                    TCGA-A4-8515 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-8516                    TCGA-A4-8517 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-8518                    TCGA-A4-8630 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-A48D                    TCGA-A4-A5XZ 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-A5Y0                    TCGA-A4-A5Y1 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-A4-A6HP                    TCGA-AL-3466 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B3-8121                    TCGA-B3-A6W5 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-B9-A44B 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-A5W7                    TCGA-B9-A5W8 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-A5W9                    TCGA-B9-A69E 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-5875                    TCGA-BQ-5876 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5881                    TCGA-BQ-5882 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5883                    TCGA-BQ-5884 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5885                    TCGA-BQ-5886 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7044                    TCGA-BQ-7045 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7046                    TCGA-BQ-7048 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-7049                    TCGA-BQ-7050 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7053 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7055                    TCGA-BQ-7056 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-7058                    TCGA-BQ-7059 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7060                    TCGA-BQ-7061 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7062                    TCGA-DW-5560 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-5561                    TCGA-DW-7834 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7836                    TCGA-DW-7837 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7838                    TCGA-DW-7839 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7840                    TCGA-DW-7841 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7842                    TCGA-DW-7963 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-F9-A4JJ                    TCGA-F9-A7VF 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-G7-6797                    TCGA-G7-7501 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-G7-7502                    TCGA-G7-A4TM 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7773 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-GL-8500 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-GL-A4EM                    TCGA-GL-A59R 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-IA-A40X                    TCGA-IA-A40Y 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-IZ-8195                    TCGA-IZ-8196 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-IZ-A6M8                    TCGA-IZ-A6M9 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-J7-8537                    TCGA-KV-A6GD 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-KV-A6GE                    TCGA-KV-A74V 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-MH-A55W                    TCGA-MH-A55Z 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-MH-A560                    TCGA-MH-A561 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-MH-A562                    TCGA-O9-A75Z 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-P4-A5E6                    TCGA-P4-A5E7 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-P4-A5EA                    TCGA-P4-A5EB 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-P4-A5ED                    TCGA-PJ-A5Z8 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
[1] "hr=" "6"  
D16V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 10(9P21.3) MUTATED         4        0        12        6
  DEL PEAK 10(9P21.3) WILD-TYPE      91       11        25        4
D16V3, multiclass
           clus
vv          DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  STAGE I                             4                            91
  STAGE II                            0                            11
  STAGE III                          12                            25
  STAGE IV                            6                             4
                               vv
clus                            T1 T2 T3+T4
  DEL PEAK 10(9P21.3) MUTATED    5  2    17
  DEL PEAK 10(9P21.3) WILD-TYPE 97 15    27
D16V4, multiclass
       clus
vv      DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  T1                              5                            97
  T2                              2                            15
  T3+T4                          17                            27
                               vv
clus                            N0 N1 N2
  DEL PEAK 10(9P21.3) MUTATED    5 10  2
  DEL PEAK 10(9P21.3) WILD-TYPE 22  6  2
D16V5, multiclass
    clus
vv   DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  N0                           5                            22
  N1                          10                             6
  N2                           2                             2
                               vv
clus                            M0 M1 MX
  DEL PEAK 10(9P21.3) MUTATED    7  4 10
  DEL PEAK 10(9P21.3) WILD-TYPE 55  2 72
D16V6, multiclass
    clus
vv   DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  M0                           7                            55
  M1                           4                             2
  MX                          10                            72
D16V7, binary
                               cls
clus                              0   1
  DEL PEAK 10(9P21.3) MUTATED    14  10
  DEL PEAK 10(9P21.3) WILD-TYPE  35 104
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(9P21.3) MUTATED     14   10
  DEL PEAK 10(9P21.3) WILD-TYPE   35  104
        clus
vv       DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  FEMALE                          14                            35
  MALE                            10                           104
D16V8, continuous
D16V9, continuous
[1] "Remove cluster labels:"      "DEL PEAK 10(9P21.3) MUTATED"
clus
  DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE 
                            1                             8 
                   TCGA-B9-A44B                    TCGA-GL-7773 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-GL-A59T                    TCGA-IA-A40U 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-P4-A5E7                    TCGA-P4-A5EB 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-PJ-A5Z9                    TCGA-Q2-A5QZ 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
D16V10, continuous
[1] "Remove cluster labels:"      "DEL PEAK 10(9P21.3) MUTATED"
clus
  DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE 
                            1                             5 
                   TCGA-AL-3472                    TCGA-GL-7773 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-IA-A40U                    TCGA-PJ-A5Z9 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-Q2-A5QZ 
"DEL PEAK 10(9P21.3) WILD-TYPE" 

Clustering(17) Variable = DEL PEAK 11(10P11.21) MUTATION ANALYSIS
D17V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 11(10P11.21) MUTATED    10   1
  DEL PEAK 11(10P11.21) WILD-TYPE 123  16
  DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE 
                             11                             139 
  DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE 
                              1                              16 
$`DEL PEAK 11(10P11.21) MUTATED`
TCGA-A4-A5Y1 TCGA-B9-4116 TCGA-B9-A44B TCGA-BQ-5876 TCGA-DZ-6131 TCGA-G7-6789 
        2.86        20.61         2.10        19.27        79.86         4.01 
TCGA-G7-7501 TCGA-G7-7502 TCGA-GL-7966 TCGA-J7-8537 TCGA-Q2-A5QZ 
       14.66        25.84         3.68         0.13         1.87 

$`DEL PEAK 11(10P11.21) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 
       18.21         0.69        16.21         0.10        35.18        19.13 
TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 
        0.89         0.23         1.61         0.07         4.60         0.03 
TCGA-A4-8311 TCGA-A4-8515 TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 
        0.07         0.69         0.76         0.03         0.10         0.30 
TCGA-A4-A48D TCGA-A4-A5XZ TCGA-A4-A5Y0 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 
        0.03         0.07         3.88         0.13         9.63        58.45 
TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 
       53.79        13.55        30.35        25.08        44.61        19.56 
TCGA-B1-7332 TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 
        7.33        33.83        10.09        30.58        34.49        12.46 
TCGA-B3-A6W5 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4117 TCGA-B9-4617 
        2.79        50.50        28.18        26.40         0.46         1.15 
TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 
       15.12        43.99        22.06         9.14         6.81         0.16 
TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 
        3.35        86.76         8.88        63.72        22.92        43.20 
TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 
       47.80        21.63        40.83        26.04        30.28        26.04 
TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 
       25.35        13.25        10.88         7.66         0.95        11.97 
TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 
        7.92         2.76       123.62        48.26        96.92        93.34 
TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 
       44.84        61.28        50.40        49.84        26.27        20.12 
TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 
       11.28         7.63         7.04         7.17         3.81        11.61 
TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 
       13.61       129.86        35.93        37.55        24.46        13.78 
TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6132 TCGA-DZ-6133 
        3.75        14.63         3.02        28.80        80.88        51.19 
TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A4JJ 
       61.02        54.90        34.19        19.00        24.89         3.19 
TCGA-F9-A7VF TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 
        0.23        51.78        48.62        11.05        39.25        34.82 
TCGA-G7-6797 TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 TCGA-GL-8500 TCGA-GL-A4EM 
       25.15         9.17       194.79        12.92         7.76         1.05 
TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U TCGA-IA-A40X TCGA-IA-A40Y TCGA-IZ-8195 
        5.85         2.99        16.80        14.14         2.04        22.26 
TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-KV-A6GD TCGA-KV-A6GE TCGA-KV-A74V 
       21.34         4.80         0.07         5.26        16.64         5.29 
TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 TCGA-MH-A562 TCGA-O9-A75Z 
       13.08        12.85        17.85        14.40         9.60         4.87 
TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EA TCGA-P4-A5EB TCGA-P4-A5ED TCGA-PJ-A5Z8 
       99.78        87.22         6.61        84.95        92.58         3.72 
TCGA-PJ-A5Z9 
        5.72 

  DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE 
                           0.13                            0.03 
  DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE 
                          79.86                          194.79 
  DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE 
                           4.01                           14.14 
[1] "0.1 - 79.9 (4.0)"   "0.0 - 194.8 (14.1)"
                     TCGA-A4-7286                      TCGA-A4-7287 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-7288                      TCGA-A4-7583 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-7585                      TCGA-A4-7732 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-7734                      TCGA-A4-7915 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-7996                      TCGA-A4-7997 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-8098                      TCGA-A4-8310 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-8311                      TCGA-A4-8515 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-8516                      TCGA-A4-8517 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-8518                      TCGA-A4-8630 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-A48D                      TCGA-A4-A5XZ 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-A5Y0                      TCGA-A4-A5Y1 
"DEL PEAK 11(10P11.21) WILD-TYPE"   "DEL PEAK 11(10P11.21) MUTATED" 
                     TCGA-A4-A6HP                      TCGA-AL-3466 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-AL-3467                      TCGA-AL-3468 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-AL-3471                      TCGA-AL-3472 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-AL-3473                      TCGA-AL-7173 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B1-5398                      TCGA-B1-7332 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B3-3925                      TCGA-B3-3926 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B3-4103                      TCGA-B3-4104 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B3-8121                      TCGA-B3-A6W5 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B9-4113                      TCGA-B9-4114 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B9-4115                      TCGA-B9-4116 
"DEL PEAK 11(10P11.21) WILD-TYPE"   "DEL PEAK 11(10P11.21) MUTATED" 
                     TCGA-B9-4117                      TCGA-B9-4617 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B9-5155                      TCGA-B9-5156 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B9-7268                      TCGA-B9-A44B 
"DEL PEAK 11(10P11.21) WILD-TYPE"   "DEL PEAK 11(10P11.21) MUTATED" 
                     TCGA-B9-A5W7                      TCGA-B9-A5W8 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B9-A5W9                      TCGA-B9-A69E 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5875                      TCGA-BQ-5876 
"DEL PEAK 11(10P11.21) WILD-TYPE"   "DEL PEAK 11(10P11.21) MUTATED" 
                     TCGA-BQ-5877                      TCGA-BQ-5878 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5879                      TCGA-BQ-5880 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5881                      TCGA-BQ-5882 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5883                      TCGA-BQ-5884 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5885                      TCGA-BQ-5886 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5887                      TCGA-BQ-5888 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5889                      TCGA-BQ-5890 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5891                      TCGA-BQ-5892 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5893                      TCGA-BQ-5894 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7044                      TCGA-BQ-7045 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7046                      TCGA-BQ-7048 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7049                      TCGA-BQ-7050 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7051                      TCGA-BQ-7053 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7055                      TCGA-BQ-7056 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7058                      TCGA-BQ-7059 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7060                      TCGA-BQ-7061 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7062                      TCGA-DW-5560 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DW-5561                      TCGA-DW-7834 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DW-7836                      TCGA-DW-7837 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DW-7838                      TCGA-DW-7839 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DW-7840                      TCGA-DW-7841 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DW-7842                      TCGA-DW-7963 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DZ-6131                      TCGA-DZ-6132 
  "DEL PEAK 11(10P11.21) MUTATED" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DZ-6133                      TCGA-DZ-6134 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DZ-6135                      TCGA-EV-5901 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-EV-5902                      TCGA-EV-5903 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-F9-A4JJ                      TCGA-F9-A7VF 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-G7-6789                      TCGA-G7-6790 
  "DEL PEAK 11(10P11.21) MUTATED" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-G7-6792                      TCGA-G7-6793 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-G7-6795                      TCGA-G7-6796 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-G7-6797                      TCGA-G7-7501 
"DEL PEAK 11(10P11.21) WILD-TYPE"   "DEL PEAK 11(10P11.21) MUTATED" 
                     TCGA-G7-7502                      TCGA-G7-A4TM 
  "DEL PEAK 11(10P11.21) MUTATED" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-GL-6846                      TCGA-GL-7773 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-GL-7966                      TCGA-GL-8500 
  "DEL PEAK 11(10P11.21) MUTATED" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-GL-A4EM                      TCGA-GL-A59R 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-GL-A59T                      TCGA-IA-A40U 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-IA-A40X                      TCGA-IA-A40Y 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-IZ-8195                      TCGA-IZ-8196 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-IZ-A6M8                      TCGA-IZ-A6M9 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-J7-8537                      TCGA-KV-A6GD 
  "DEL PEAK 11(10P11.21) MUTATED" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-KV-A6GE                      TCGA-KV-A74V 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-MH-A55W                      TCGA-MH-A55Z 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-MH-A560                      TCGA-MH-A561 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-MH-A562                      TCGA-O9-A75Z 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-P4-A5E6                      TCGA-P4-A5E7 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-P4-A5EA                      TCGA-P4-A5EB 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-P4-A5ED                      TCGA-PJ-A5Z8 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-PJ-A5Z9                      TCGA-Q2-A5QZ 
"DEL PEAK 11(10P11.21) WILD-TYPE"   "DEL PEAK 11(10P11.21) MUTATED" 
                     TCGA-A4-7286                      TCGA-A4-7287 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-7288                      TCGA-A4-7583 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-7585                      TCGA-A4-7732 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-7734                      TCGA-A4-7915 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-7996                      TCGA-A4-7997 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-8098                      TCGA-A4-8310 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-8311                      TCGA-A4-8515 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-8516                      TCGA-A4-8517 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-8518                      TCGA-A4-8630 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-A48D                      TCGA-A4-A5XZ 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-A5Y0                      TCGA-A4-A5Y1 
"DEL PEAK 11(10P11.21) WILD-TYPE"   "DEL PEAK 11(10P11.21) MUTATED" 
                     TCGA-A4-A6HP                      TCGA-AL-3466 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-AL-3467                      TCGA-AL-3468 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-AL-3471                      TCGA-AL-3472 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-AL-3473                      TCGA-AL-7173 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B1-5398                      TCGA-B1-7332 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B3-3925                      TCGA-B3-3926 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B3-4103                      TCGA-B3-4104 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B3-8121                      TCGA-B3-A6W5 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B9-4113                      TCGA-B9-4114 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B9-4115                      TCGA-B9-4116 
"DEL PEAK 11(10P11.21) WILD-TYPE"   "DEL PEAK 11(10P11.21) MUTATED" 
                     TCGA-B9-4117                      TCGA-B9-4617 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B9-5155                      TCGA-B9-5156 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B9-7268                      TCGA-B9-A44B 
"DEL PEAK 11(10P11.21) WILD-TYPE"   "DEL PEAK 11(10P11.21) MUTATED" 
                     TCGA-B9-A5W7                      TCGA-B9-A5W8 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B9-A5W9                      TCGA-B9-A69E 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5875                      TCGA-BQ-5876 
"DEL PEAK 11(10P11.21) WILD-TYPE"   "DEL PEAK 11(10P11.21) MUTATED" 
                     TCGA-BQ-5877                      TCGA-BQ-5878 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5879                      TCGA-BQ-5880 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5881                      TCGA-BQ-5882 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5883                      TCGA-BQ-5884 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5885                      TCGA-BQ-5886 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5887                      TCGA-BQ-5888 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5889                      TCGA-BQ-5890 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5891                      TCGA-BQ-5892 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5893                      TCGA-BQ-5894 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7044                      TCGA-BQ-7045 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7046                      TCGA-BQ-7048 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7049                      TCGA-BQ-7050 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7051                      TCGA-BQ-7053 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7055                      TCGA-BQ-7056 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7058                      TCGA-BQ-7059 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7060                      TCGA-BQ-7061 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7062                      TCGA-DW-5560 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DW-5561                      TCGA-DW-7834 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DW-7836                      TCGA-DW-7837 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DW-7838                      TCGA-DW-7839 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DW-7840                      TCGA-DW-7841 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DW-7842                      TCGA-DW-7963 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DZ-6131                      TCGA-DZ-6132 
  "DEL PEAK 11(10P11.21) MUTATED" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DZ-6133                      TCGA-DZ-6134 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DZ-6135                      TCGA-EV-5901 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-EV-5902                      TCGA-EV-5903 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-F9-A4JJ                      TCGA-F9-A7VF 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-G7-6789                      TCGA-G7-6790 
  "DEL PEAK 11(10P11.21) MUTATED" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-G7-6792                      TCGA-G7-6793 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-G7-6795                      TCGA-G7-6796 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-G7-6797                      TCGA-G7-7501 
"DEL PEAK 11(10P11.21) WILD-TYPE"   "DEL PEAK 11(10P11.21) MUTATED" 
                     TCGA-G7-7502                      TCGA-G7-A4TM 
  "DEL PEAK 11(10P11.21) MUTATED" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-GL-6846                      TCGA-GL-7773 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-GL-7966                      TCGA-GL-8500 
  "DEL PEAK 11(10P11.21) MUTATED" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-GL-A4EM                      TCGA-GL-A59R 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-GL-A59T                      TCGA-IA-A40U 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-IA-A40X                      TCGA-IA-A40Y 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-IZ-8195                      TCGA-IZ-8196 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-IZ-A6M8                      TCGA-IZ-A6M9 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-J7-8537                      TCGA-KV-A6GD 
  "DEL PEAK 11(10P11.21) MUTATED" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-KV-A6GE                      TCGA-KV-A74V 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-MH-A55W                      TCGA-MH-A55Z 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-MH-A560                      TCGA-MH-A561 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-MH-A562                      TCGA-O9-A75Z 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-P4-A5E6                      TCGA-P4-A5E7 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-P4-A5EA                      TCGA-P4-A5EB 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-P4-A5ED                      TCGA-PJ-A5Z8 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-PJ-A5Z9                      TCGA-Q2-A5QZ 
"DEL PEAK 11(10P11.21) WILD-TYPE"   "DEL PEAK 11(10P11.21) MUTATED" 
                     TCGA-A4-7286                      TCGA-A4-7287 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-7288                      TCGA-A4-7583 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-7585                      TCGA-A4-7732 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-7734                      TCGA-A4-7915 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-7996                      TCGA-A4-7997 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-8098                      TCGA-A4-8310 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-8311                      TCGA-A4-8515 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-8516                      TCGA-A4-8517 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-8518                      TCGA-A4-8630 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-A48D                      TCGA-A4-A5XZ 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-A4-A5Y0                      TCGA-A4-A5Y1 
"DEL PEAK 11(10P11.21) WILD-TYPE"   "DEL PEAK 11(10P11.21) MUTATED" 
                     TCGA-A4-A6HP                      TCGA-AL-3466 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-AL-3467                      TCGA-AL-3468 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-AL-3471                      TCGA-AL-3472 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-AL-3473                      TCGA-AL-7173 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B1-5398                      TCGA-B1-7332 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B3-3925                      TCGA-B3-3926 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B3-4103                      TCGA-B3-4104 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B3-8121                      TCGA-B3-A6W5 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B9-4113                      TCGA-B9-4114 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B9-4115                      TCGA-B9-4116 
"DEL PEAK 11(10P11.21) WILD-TYPE"   "DEL PEAK 11(10P11.21) MUTATED" 
                     TCGA-B9-4117                      TCGA-B9-4617 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B9-5155                      TCGA-B9-5156 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B9-7268                      TCGA-B9-A44B 
"DEL PEAK 11(10P11.21) WILD-TYPE"   "DEL PEAK 11(10P11.21) MUTATED" 
                     TCGA-B9-A5W7                      TCGA-B9-A5W8 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-B9-A5W9                      TCGA-B9-A69E 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5875                      TCGA-BQ-5876 
"DEL PEAK 11(10P11.21) WILD-TYPE"   "DEL PEAK 11(10P11.21) MUTATED" 
                     TCGA-BQ-5877                      TCGA-BQ-5878 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5879                      TCGA-BQ-5880 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5881                      TCGA-BQ-5882 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5883                      TCGA-BQ-5884 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5885                      TCGA-BQ-5886 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5887                      TCGA-BQ-5888 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5889                      TCGA-BQ-5890 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5891                      TCGA-BQ-5892 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-5893                      TCGA-BQ-5894 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7044                      TCGA-BQ-7045 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7046                      TCGA-BQ-7048 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7049                      TCGA-BQ-7050 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7051                      TCGA-BQ-7053 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7055                      TCGA-BQ-7056 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7058                      TCGA-BQ-7059 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7060                      TCGA-BQ-7061 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-BQ-7062                      TCGA-DW-5560 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DW-5561                      TCGA-DW-7834 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DW-7836                      TCGA-DW-7837 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DW-7838                      TCGA-DW-7839 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DW-7840                      TCGA-DW-7841 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DW-7842                      TCGA-DW-7963 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DZ-6131                      TCGA-DZ-6132 
  "DEL PEAK 11(10P11.21) MUTATED" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DZ-6133                      TCGA-DZ-6134 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-DZ-6135                      TCGA-EV-5901 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-EV-5902                      TCGA-EV-5903 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-F9-A4JJ                      TCGA-F9-A7VF 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-G7-6789                      TCGA-G7-6790 
  "DEL PEAK 11(10P11.21) MUTATED" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-G7-6792                      TCGA-G7-6793 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-G7-6795                      TCGA-G7-6796 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-G7-6797                      TCGA-G7-7501 
"DEL PEAK 11(10P11.21) WILD-TYPE"   "DEL PEAK 11(10P11.21) MUTATED" 
                     TCGA-G7-7502                      TCGA-G7-A4TM 
  "DEL PEAK 11(10P11.21) MUTATED" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-GL-6846                      TCGA-GL-7773 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-GL-7966                      TCGA-GL-8500 
  "DEL PEAK 11(10P11.21) MUTATED" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-GL-A4EM                      TCGA-GL-A59R 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-GL-A59T                      TCGA-IA-A40U 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-IA-A40X                      TCGA-IA-A40Y 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-IZ-8195                      TCGA-IZ-8196 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-IZ-A6M8                      TCGA-IZ-A6M9 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-J7-8537                      TCGA-KV-A6GD 
  "DEL PEAK 11(10P11.21) MUTATED" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-KV-A6GE                      TCGA-KV-A74V 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-MH-A55W                      TCGA-MH-A55Z 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-MH-A560                      TCGA-MH-A561 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-MH-A562                      TCGA-O9-A75Z 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-P4-A5E6                      TCGA-P4-A5E7 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-P4-A5EA                      TCGA-P4-A5EB 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-P4-A5ED                      TCGA-PJ-A5Z8 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-PJ-A5Z9                      TCGA-Q2-A5QZ 
"DEL PEAK 11(10P11.21) WILD-TYPE"   "DEL PEAK 11(10P11.21) MUTATED" 
[1] "hr=" "1.3"
D17V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 11(10P11.21) MUTATED         2        0         7        1
  DEL PEAK 11(10P11.21) WILD-TYPE      93       11        30        9
D17V3, multiclass
           clus
vv          DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE
  STAGE I                               2                              93
  STAGE II                              0                              11
  STAGE III                             7                              30
  STAGE IV                              1                               9
                                 vv
clus                              T1 T2 T3+T4
  DEL PEAK 11(10P11.21) MUTATED    3  1     7
  DEL PEAK 11(10P11.21) WILD-TYPE 99 16    37
D17V4, multiclass
       clus
vv      DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE
  T1                                3                              99
  T2                                1                              16
  T3+T4                             7                              37
                                 vv
clus                              N0 N1 N2
  DEL PEAK 11(10P11.21) MUTATED    1  4  1
  DEL PEAK 11(10P11.21) WILD-TYPE 26 12  3
D17V5, multiclass
    clus
vv   DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE
  N0                             1                              26
  N1                             4                              12
  N2                             1                               3
                                 vv
clus                              M0 M1 MX
  DEL PEAK 11(10P11.21) MUTATED    2  0  7
  DEL PEAK 11(10P11.21) WILD-TYPE 60  6 75
D17V6, multiclass
    clus
vv   DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE
  M0                             2                              60
  M1                             0                               6
  MX                             7                              75
D17V7, binary
                                 cls
clus                                0   1
  DEL PEAK 11(10P11.21) MUTATED     6   5
  DEL PEAK 11(10P11.21) WILD-TYPE  43 109
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 11(10P11.21) MUTATED      6    5
  DEL PEAK 11(10P11.21) WILD-TYPE   43  109
        clus
vv       DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE
  FEMALE                             6                              43
  MALE                               5                             109
D17V8, continuous
D17V9, continuous
[1] "Remove cluster labels:"        "DEL PEAK 11(10P11.21) MUTATED"
clus
  DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE 
                              2                               7 
                     TCGA-B9-A69E                      TCGA-GL-7773 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-GL-A59T                      TCGA-IA-A40U 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-P4-A5E7                      TCGA-P4-A5EB 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-PJ-A5Z9 
"DEL PEAK 11(10P11.21) WILD-TYPE" 
D17V10, continuous
[1] "Remove cluster labels:"        "DEL PEAK 11(10P11.21) MUTATED"
clus
  DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE 
                              1                               5 
                     TCGA-AL-3472                      TCGA-B9-A69E 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-GL-7773                      TCGA-IA-A40U 
"DEL PEAK 11(10P11.21) WILD-TYPE" "DEL PEAK 11(10P11.21) WILD-TYPE" 
                     TCGA-PJ-A5Z9 
"DEL PEAK 11(10P11.21) WILD-TYPE" 

Clustering(18) Variable = DEL PEAK 12(11Q22.3) MUTATION ANALYSIS
D18V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 12(11Q22.3) MUTATED    11   5
  DEL PEAK 12(11Q22.3) WILD-TYPE 122  12
  DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE 
                            16                            134 
  DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE 
                             5                             12 
$`DEL PEAK 12(11Q22.3) MUTATED`
TCGA-A4-A5Y1 TCGA-B1-7332 TCGA-B3-4104 TCGA-B9-A44B TCGA-BQ-5876 TCGA-BQ-5877 
        2.86         7.33        34.49         2.10        19.27         8.88 
TCGA-BQ-5882 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-7044 TCGA-G7-6789 TCGA-G7-6793 
       21.63        10.88         7.66       123.62         4.01        11.05 
TCGA-G7-7502 TCGA-IA-A40Y TCGA-J7-8537 TCGA-PJ-A5Z8 
       25.84         2.04         0.13         3.72 

$`DEL PEAK 12(11Q22.3) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 
       18.21         0.69        16.21         0.10        35.18        19.13 
TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 
        0.89         0.23         1.61         0.07         4.60         0.03 
TCGA-A4-8311 TCGA-A4-8515 TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 
        0.07         0.69         0.76         0.03         0.10         0.30 
TCGA-A4-A48D TCGA-A4-A5XZ TCGA-A4-A5Y0 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 
        0.03         0.07         3.88         0.13         9.63        58.45 
TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 
       53.79        13.55        30.35        25.08        44.61        19.56 
TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-8121 TCGA-B3-A6W5 TCGA-B9-4113 
       33.83        10.09        30.58        12.46         2.79        50.50 
TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 
       28.18        26.40        20.61         0.46         1.15        15.12 
TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 TCGA-B9-A69E 
       43.99        22.06         9.14         6.81         0.16         3.35 
TCGA-BQ-5875 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5883 
       86.76        63.72        22.92        43.20        47.80        40.83 
TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5891 
       26.04        30.28        26.04        25.35        13.25         0.95 
TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 
       11.97         7.92         2.76        48.26        96.92        93.34 
TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 
       44.84        61.28        50.40        49.84        26.27        20.12 
TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 
       11.28         7.63         7.04         7.17         3.81        11.61 
TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 
       13.61       129.86        35.93        37.55        24.46        13.78 
TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6132 
        3.75        14.63         3.02        28.80        79.86        80.88 
TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 
       51.19        61.02        54.90        34.19        19.00        24.89 
TCGA-F9-A4JJ TCGA-F9-A7VF TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6795 TCGA-G7-6796 
        3.19         0.23        51.78        48.62        39.25        34.82 
TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 TCGA-GL-7966 
       25.15        14.66         9.17       194.79        12.92         3.68 
TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U TCGA-IA-A40X 
        7.76         1.05         5.85         2.99        16.80        14.14 
TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-KV-A6GD TCGA-KV-A6GE 
       22.26        21.34         4.80         0.07         5.26        16.64 
TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 TCGA-MH-A562 
        5.29        13.08        12.85        17.85        14.40         9.60 
TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EA TCGA-P4-A5EB TCGA-P4-A5ED 
        4.87        99.78        87.22         6.61        84.95        92.58 
TCGA-PJ-A5Z9 TCGA-Q2-A5QZ 
        5.72         1.87 

  DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE 
                          0.13                           0.03 
  DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE 
                        123.62                         194.79 
  DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE 
                         8.270                         14.645 
[1] "0.1 - 123.6 (8.3)"  "0.0 - 194.8 (14.6)"
                    TCGA-A4-7286                     TCGA-A4-7287 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
  "DEL PEAK 12(11Q22.3) MUTATED" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK 12(11Q22.3) MUTATED"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
  "DEL PEAK 12(11Q22.3) MUTATED" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 12(11Q22.3) MUTATED" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK 12(11Q22.3) MUTATED" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
  "DEL PEAK 12(11Q22.3) MUTATED" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
  "DEL PEAK 12(11Q22.3) MUTATED" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK 12(11Q22.3) MUTATED"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
  "DEL PEAK 12(11Q22.3) MUTATED" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 12(11Q22.3) MUTATED" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK 12(11Q22.3) MUTATED" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
  "DEL PEAK 12(11Q22.3) MUTATED" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
  "DEL PEAK 12(11Q22.3) MUTATED" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK 12(11Q22.3) MUTATED"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
  "DEL PEAK 12(11Q22.3) MUTATED" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 12(11Q22.3) MUTATED" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK 12(11Q22.3) MUTATED" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
  "DEL PEAK 12(11Q22.3) MUTATED" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 12(11Q22.3) WILD-TYPE"   "DEL PEAK 12(11Q22.3) MUTATED" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
[1] "hr=" "6.2"
D18V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 12(11Q22.3) MUTATED         3        2         8        4
  DEL PEAK 12(11Q22.3) WILD-TYPE      92        9        29        6
D18V3, multiclass
           clus
vv          DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE
  STAGE I                              3                             92
  STAGE II                             2                              9
  STAGE III                            8                             29
  STAGE IV                             4                              6
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK 12(11Q22.3) MUTATED    4  2    11
  DEL PEAK 12(11Q22.3) WILD-TYPE 98 15    33
D18V4, multiclass
       clus
vv      DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE
  T1                               4                             98
  T2                               2                             15
  T3+T4                           11                             33
                                vv
clus                             N0 N1 N2
  DEL PEAK 12(11Q22.3) MUTATED    2  5  2
  DEL PEAK 12(11Q22.3) WILD-TYPE 25 11  2
D18V5, multiclass
    clus
vv   DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE
  N0                            2                             25
  N1                            5                             11
  N2                            2                              2
                                vv
clus                             M0 M1 MX
  DEL PEAK 12(11Q22.3) MUTATED    8  2  6
  DEL PEAK 12(11Q22.3) WILD-TYPE 54  4 76
D18V6, multiclass
    clus
vv   DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE
  M0                            8                             54
  M1                            2                              4
  MX                            6                             76
D18V7, binary
                                cls
clus                               0   1
  DEL PEAK 12(11Q22.3) MUTATED     7  10
  DEL PEAK 12(11Q22.3) WILD-TYPE  42 104
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(11Q22.3) MUTATED      7   10
  DEL PEAK 12(11Q22.3) WILD-TYPE   42  104
        clus
vv       DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE
  FEMALE                            7                             42
  MALE                             10                            104
D18V8, continuous
D18V9, continuous
[1] "Remove cluster labels:"       "DEL PEAK 12(11Q22.3) MUTATED"
clus
  DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE 
                             1                              8 
                    TCGA-B9-A69E                     TCGA-GL-7773 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-P4-A5E7                     TCGA-P4-A5EB 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 12(11Q22.3) WILD-TYPE" "DEL PEAK 12(11Q22.3) WILD-TYPE" 
D18V10, continuous

Clustering(19) Variable = DEL PEAK 13(11Q24.2) MUTATION ANALYSIS
D19V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 13(11Q24.2) MUTATED    10   6
  DEL PEAK 13(11Q24.2) WILD-TYPE 123  11
  DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE 
                            16                            134 
  DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE 
                             6                             11 
$`DEL PEAK 13(11Q24.2) MUTATED`
TCGA-A4-A5Y1 TCGA-B1-7332 TCGA-B3-4104 TCGA-B9-A44B TCGA-BQ-5876 TCGA-BQ-5877 
        2.86         7.33        34.49         2.10        19.27         8.88 
TCGA-BQ-5882 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-G7-6789 
       21.63        10.88         7.66       123.62        48.26         4.01 
TCGA-G7-6793 TCGA-G7-7502 TCGA-IA-A40Y TCGA-J7-8537 
       11.05        25.84         2.04         0.13 

$`DEL PEAK 13(11Q24.2) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 
       18.21         0.69        16.21         0.10        35.18        19.13 
TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 
        0.89         0.23         1.61         0.07         4.60         0.03 
TCGA-A4-8311 TCGA-A4-8515 TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 
        0.07         0.69         0.76         0.03         0.10         0.30 
TCGA-A4-A48D TCGA-A4-A5XZ TCGA-A4-A5Y0 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 
        0.03         0.07         3.88         0.13         9.63        58.45 
TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 
       53.79        13.55        30.35        25.08        44.61        19.56 
TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-8121 TCGA-B3-A6W5 TCGA-B9-4113 
       33.83        10.09        30.58        12.46         2.79        50.50 
TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 
       28.18        26.40        20.61         0.46         1.15        15.12 
TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 TCGA-B9-A69E 
       43.99        22.06         9.14         6.81         0.16         3.35 
TCGA-BQ-5875 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5883 
       86.76        63.72        22.92        43.20        47.80        40.83 
TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5891 
       26.04        30.28        26.04        25.35        13.25         0.95 
TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 
       11.97         7.92         2.76        96.92        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 
       61.28        50.40        49.84        26.27        20.12        11.28 
TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 
        7.63         7.04         7.17         3.81        11.61        13.61 
TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 
      129.86        35.93        37.55        24.46        13.78         3.75 
TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 
       14.63         3.02        28.80        79.86        80.88        51.19 
TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A4JJ 
       61.02        54.90        34.19        19.00        24.89         3.19 
TCGA-F9-A7VF TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 
        0.23        51.78        48.62        39.25        34.82        25.15 
TCGA-G7-7501 TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 TCGA-GL-7966 TCGA-GL-8500 
       14.66         9.17       194.79        12.92         3.68         7.76 
TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U TCGA-IA-A40X TCGA-IZ-8195 
        1.05         5.85         2.99        16.80        14.14        22.26 
TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-KV-A6GD TCGA-KV-A6GE TCGA-KV-A74V 
       21.34         4.80         0.07         5.26        16.64         5.29 
TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 TCGA-MH-A562 TCGA-O9-A75Z 
       13.08        12.85        17.85        14.40         9.60         4.87 
TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EA TCGA-P4-A5EB TCGA-P4-A5ED TCGA-PJ-A5Z8 
       99.78        87.22         6.61        84.95        92.58         3.72 
TCGA-PJ-A5Z9 TCGA-Q2-A5QZ 
        5.72         1.87 

  DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE 
                          0.13                           0.03 
  DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE 
                        123.62                         194.79 
  DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE 
                         9.880                         14.515 
[1] "0.1 - 123.6 (9.9)"  "0.0 - 194.8 (14.5)"
                    TCGA-A4-7286                     TCGA-A4-7287 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
  "DEL PEAK 13(11Q24.2) MUTATED" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK 13(11Q24.2) MUTATED"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
  "DEL PEAK 13(11Q24.2) MUTATED"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 13(11Q24.2) MUTATED" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK 13(11Q24.2) MUTATED" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
  "DEL PEAK 13(11Q24.2) MUTATED" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
  "DEL PEAK 13(11Q24.2) MUTATED" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK 13(11Q24.2) MUTATED"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
  "DEL PEAK 13(11Q24.2) MUTATED"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 13(11Q24.2) MUTATED" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK 13(11Q24.2) MUTATED" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
  "DEL PEAK 13(11Q24.2) MUTATED" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
  "DEL PEAK 13(11Q24.2) MUTATED" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK 13(11Q24.2) MUTATED"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
  "DEL PEAK 13(11Q24.2) MUTATED"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 13(11Q24.2) MUTATED" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK 13(11Q24.2) MUTATED" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 13(11Q24.2) WILD-TYPE"   "DEL PEAK 13(11Q24.2) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
  "DEL PEAK 13(11Q24.2) MUTATED" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
[1] "hr=" "6.3"
D19V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 13(11Q24.2) MUTATED         3        2         8        4
  DEL PEAK 13(11Q24.2) WILD-TYPE      92        9        29        6
D19V3, multiclass
           clus
vv          DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE
  STAGE I                              3                             92
  STAGE II                             2                              9
  STAGE III                            8                             29
  STAGE IV                             4                              6
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK 13(11Q24.2) MUTATED    4  2    11
  DEL PEAK 13(11Q24.2) WILD-TYPE 98 15    33
D19V4, multiclass
       clus
vv      DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE
  T1                               4                             98
  T2                               2                             15
  T3+T4                           11                             33
                                vv
clus                             N0 N1 N2
  DEL PEAK 13(11Q24.2) MUTATED    3  5  2
  DEL PEAK 13(11Q24.2) WILD-TYPE 24 11  2
D19V5, multiclass
    clus
vv   DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE
  N0                            3                             24
  N1                            5                             11
  N2                            2                              2
                                vv
clus                             M0 M1 MX
  DEL PEAK 13(11Q24.2) MUTATED    8  2  6
  DEL PEAK 13(11Q24.2) WILD-TYPE 54  4 76
D19V6, multiclass
    clus
vv   DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE
  M0                            8                             54
  M1                            2                              4
  MX                            6                             76
D19V7, binary
                                cls
clus                               0   1
  DEL PEAK 13(11Q24.2) MUTATED     6  11
  DEL PEAK 13(11Q24.2) WILD-TYPE  43 103
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(11Q24.2) MUTATED      6   11
  DEL PEAK 13(11Q24.2) WILD-TYPE   43  103
        clus
vv       DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE
  FEMALE                            6                             43
  MALE                             11                            103
D19V8, continuous
D19V9, continuous
[1] "Remove cluster labels:"       "DEL PEAK 13(11Q24.2) MUTATED"
clus
  DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE 
                             1                              8 
                    TCGA-B9-A69E                     TCGA-GL-7773 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-P4-A5E7                     TCGA-P4-A5EB 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 13(11Q24.2) WILD-TYPE" "DEL PEAK 13(11Q24.2) WILD-TYPE" 
D19V10, continuous

Clustering(20) Variable = DEL PEAK 14(14Q11.2) MUTATION ANALYSIS
D20V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 14(14Q11.2) MUTATED    26   7
  DEL PEAK 14(14Q11.2) WILD-TYPE 107  10
  DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE 
                            33                            117 
  DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE 
                             7                             10 
$`DEL PEAK 14(14Q11.2) MUTATED`
TCGA-A4-7286 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-A5Y1 
       18.21         0.10        35.18         0.07         4.60         2.86 
TCGA-AL-3466 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-7332 TCGA-B3-3926 TCGA-B3-4103 
        9.63        25.08        44.61         7.33        10.09        30.58 
TCGA-B9-4116 TCGA-B9-A5W8 TCGA-BQ-5876 TCGA-BQ-5885 TCGA-BQ-5888 TCGA-BQ-5889 
       20.61         6.81        19.27        30.28        13.25        10.88 
TCGA-BQ-5894 TCGA-DW-5560 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-F9-A4JJ TCGA-G7-6789 
        2.76        11.61        79.86        80.88         3.19         4.01 
TCGA-G7-6793 TCGA-G7-6796 TCGA-G7-7501 TCGA-G7-7502 TCGA-GL-8500 TCGA-IA-A40U 
       11.05        34.82        14.66        25.84         7.76        16.80 
TCGA-IA-A40Y TCGA-P4-A5EA TCGA-PJ-A5Z8 
        2.04         6.61         3.72 

$`DEL PEAK 14(14Q11.2) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 
        0.69        16.21        19.13         0.89         0.23         1.61 
TCGA-A4-8310 TCGA-A4-8311 TCGA-A4-8515 TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8518 
        0.03         0.07         0.69         0.76         0.03         0.10 
TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A5XZ TCGA-A4-A5Y0 TCGA-A4-A6HP TCGA-AL-3467 
        0.30         0.03         0.07         3.88         0.13        58.45 
TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-4104 
       53.79        13.55        30.35        19.56        33.83        34.49 
TCGA-B3-8121 TCGA-B3-A6W5 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4117 
       12.46         2.79        50.50        28.18        26.40         0.46 
TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A44B TCGA-B9-A5W7 
        1.15        15.12        43.99        22.06         2.10         9.14 
TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 
        0.16         3.35        86.76         8.88        63.72        22.92 
TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5886 
       43.20        47.80        21.63        40.83        26.04        26.04 
TCGA-BQ-5887 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-7044 
       25.35         7.66         0.95        11.97         7.92       123.62 
TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 
       48.26        96.92        93.34        44.84        61.28        50.40 
TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 
       49.84        26.27        20.12        11.28         7.63         7.04 
TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 
        7.17         3.81        13.61       129.86        35.93        37.55 
TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 
       24.46        13.78         3.75        14.63         3.02        28.80 
TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 
       51.19        61.02        54.90        34.19        19.00        24.89 
TCGA-F9-A7VF TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6795 TCGA-G7-6797 TCGA-G7-A4TM 
        0.23        51.78        48.62        39.25        25.15         9.17 
TCGA-GL-6846 TCGA-GL-7773 TCGA-GL-7966 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T 
      194.79        12.92         3.68         1.05         5.85         2.99 
TCGA-IA-A40X TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-J7-8537 
       14.14        22.26        21.34         4.80         0.07         0.13 
TCGA-KV-A6GD TCGA-KV-A6GE TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 
        5.26        16.64         5.29        13.08        12.85        17.85 
TCGA-MH-A561 TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EB 
       14.40         9.60         4.87        99.78        87.22        84.95 
TCGA-P4-A5ED TCGA-PJ-A5Z9 TCGA-Q2-A5QZ 
       92.58         5.72         1.87 

  DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE 
                         80.88                         194.79 
  DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE 
                         11.05                          14.63 
[1] "0.1 - 80.9 (11.1)"  "0.0 - 194.8 (14.6)"
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-A4-8098                     TCGA-A4-8310 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
  "DEL PEAK 14(14Q11.2) MUTATED"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 14(14Q11.2) MUTATED"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-A4-8098                     TCGA-A4-8310 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
  "DEL PEAK 14(14Q11.2) MUTATED"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 14(14Q11.2) MUTATED"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-A4-8098                     TCGA-A4-8310 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
  "DEL PEAK 14(14Q11.2) MUTATED"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 14(14Q11.2) MUTATED"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
  "DEL PEAK 14(14Q11.2) MUTATED" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 14(14Q11.2) WILD-TYPE"   "DEL PEAK 14(14Q11.2) MUTATED" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
[1] "hr=" "3.7"
D20V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 14(14Q11.2) MUTATED        13        3        10        6
  DEL PEAK 14(14Q11.2) WILD-TYPE      82        8        27        4
D20V3, multiclass
           clus
vv          DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE
  STAGE I                             13                             82
  STAGE II                             3                              8
  STAGE III                           10                             27
  STAGE IV                             6                              4
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK 14(14Q11.2) MUTATED   14  4    16
  DEL PEAK 14(14Q11.2) WILD-TYPE 88 13    28
D20V4, multiclass
       clus
vv      DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE
  T1                              14                             88
  T2                               4                             13
  T3+T4                           16                             28
                                vv
clus                             N0 N1 N2
  DEL PEAK 14(14Q11.2) MUTATED    7  7  3
  DEL PEAK 14(14Q11.2) WILD-TYPE 20  9  1
D20V5, multiclass
    clus
vv   DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE
  N0                            7                             20
  N1                            7                              9
  N2                            3                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK 14(14Q11.2) MUTATED   14  3 15
  DEL PEAK 14(14Q11.2) WILD-TYPE 48  3 67
D20V6, multiclass
    clus
vv   DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE
  M0                           14                             48
  M1                            3                              3
  MX                           15                             67
D20V7, binary
                                cls
clus                              0  1
  DEL PEAK 14(14Q11.2) MUTATED   14 20
  DEL PEAK 14(14Q11.2) WILD-TYPE 35 94
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(14Q11.2) MUTATED     14   20
  DEL PEAK 14(14Q11.2) WILD-TYPE   35   94
        clus
vv       DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE
  FEMALE                           14                             35
  MALE                             20                             94
D20V8, continuous
D20V9, continuous
[1] "Remove cluster labels:"       "DEL PEAK 14(14Q11.2) MUTATED"
clus
  DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE 
                             1                              8 
                    TCGA-B9-A44B                     TCGA-B9-A69E 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-GL-7773                     TCGA-GL-A59T 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-P4-A5E7                     TCGA-P4-A5EB 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
D20V10, continuous
[1] "Remove cluster labels:"       "DEL PEAK 14(14Q11.2) MUTATED"
clus
  DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE 
                             1                              5 
                    TCGA-AL-3472                     TCGA-B9-A69E 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-GL-7773                     TCGA-PJ-A5Z9 
"DEL PEAK 14(14Q11.2) WILD-TYPE" "DEL PEAK 14(14Q11.2) WILD-TYPE" 
                    TCGA-Q2-A5QZ 
"DEL PEAK 14(14Q11.2) WILD-TYPE" 

Clustering(21) Variable = DEL PEAK 15(14Q32.2) MUTATION ANALYSIS
D21V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 15(14Q32.2) MUTATED    27   7
  DEL PEAK 15(14Q32.2) WILD-TYPE 106  10
  DEL PEAK 15(14Q32.2) MUTATED DEL PEAK 15(14Q32.2) WILD-TYPE 
                            34                            116 
  DEL PEAK 15(14Q32.2) MUTATED DEL PEAK 15(14Q32.2) WILD-TYPE 
                             7                             10 
$`DEL PEAK 15(14Q32.2) MUTATED`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7583 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-A5Y1 
       18.21         0.69         0.10         0.07         4.60         2.86 
TCGA-AL-3466 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-7332 TCGA-B3-3926 TCGA-B9-4116 
        9.63        25.08        44.61         7.33        10.09        20.61 
TCGA-B9-A5W8 TCGA-BQ-5876 TCGA-BQ-5880 TCGA-BQ-5885 TCGA-BQ-5888 TCGA-BQ-5889 
        6.81        19.27        43.20        30.28        13.25        10.88 
TCGA-BQ-5894 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-F9-A4JJ TCGA-G7-6789 TCGA-G7-6793 
        2.76        79.86        80.88         3.19         4.01        11.05 
TCGA-G7-6796 TCGA-G7-7501 TCGA-G7-7502 TCGA-GL-7773 TCGA-GL-8500 TCGA-IA-A40U 
       34.82        14.66        25.84        12.92         7.76        16.80 
TCGA-IA-A40Y TCGA-P4-A5EA TCGA-PJ-A5Z8 TCGA-Q2-A5QZ 
        2.04         6.61         3.72         1.87 

$`DEL PEAK 15(14Q32.2) WILD-TYPE`
TCGA-A4-7288 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 
       16.21        35.18        19.13         0.89         0.23         1.61 
TCGA-A4-8310 TCGA-A4-8311 TCGA-A4-8515 TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8518 
        0.03         0.07         0.69         0.76         0.03         0.10 
TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A5XZ TCGA-A4-A5Y0 TCGA-A4-A6HP TCGA-AL-3467 
        0.30         0.03         0.07         3.88         0.13        58.45 
TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-4103 
       53.79        13.55        30.35        19.56        33.83        30.58 
TCGA-B3-4104 TCGA-B3-8121 TCGA-B3-A6W5 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 
       34.49        12.46         2.79        50.50        28.18        26.40 
TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A44B 
        0.46         1.15        15.12        43.99        22.06         2.10 
TCGA-B9-A5W7 TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5877 TCGA-BQ-5878 
        9.14         0.16         3.35        86.76         8.88        63.72 
TCGA-BQ-5879 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5886 
       22.92        47.80        21.63        40.83        26.04        26.04 
TCGA-BQ-5887 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-7044 
       25.35         7.66         0.95        11.97         7.92       123.62 
TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 
       48.26        96.92        93.34        44.84        61.28        50.40 
TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 
       49.84        26.27        20.12        11.28         7.63         7.04 
TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 
        7.17         3.81        11.61        13.61       129.86        35.93 
TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 
       37.55        24.46        13.78         3.75        14.63         3.02 
TCGA-DW-7963 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 
       28.80        51.19        61.02        54.90        34.19        19.00 
TCGA-EV-5903 TCGA-F9-A7VF TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6795 TCGA-G7-6797 
       24.89         0.23        51.78        48.62        39.25        25.15 
TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7966 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T 
        9.17       194.79         3.68         1.05         5.85         2.99 
TCGA-IA-A40X TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-J7-8537 
       14.14        22.26        21.34         4.80         0.07         0.13 
TCGA-KV-A6GD TCGA-KV-A6GE TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 
        5.26        16.64         5.29        13.08        12.85        17.85 
TCGA-MH-A561 TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EB 
       14.40         9.60         4.87        99.78        87.22        84.95 
TCGA-P4-A5ED TCGA-PJ-A5Z9 
       92.58         5.72 

  DEL PEAK 15(14Q32.2) MUTATED DEL PEAK 15(14Q32.2) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 15(14Q32.2) MUTATED DEL PEAK 15(14Q32.2) WILD-TYPE 
                         80.88                         194.79 
  DEL PEAK 15(14Q32.2) MUTATED DEL PEAK 15(14Q32.2) WILD-TYPE 
                        10.485                         15.665 
[1] "0.1 - 80.9 (10.5)"  "0.0 - 194.8 (15.7)"
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 15(14Q32.2) MUTATED"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-A4-8098                     TCGA-A4-8310 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
  "DEL PEAK 15(14Q32.2) MUTATED"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 15(14Q32.2) MUTATED"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 15(14Q32.2) MUTATED"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-A4-8098                     TCGA-A4-8310 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
  "DEL PEAK 15(14Q32.2) MUTATED"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 15(14Q32.2) MUTATED"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 15(14Q32.2) MUTATED"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-A4-8098                     TCGA-A4-8310 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
  "DEL PEAK 15(14Q32.2) MUTATED"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 15(14Q32.2) MUTATED"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 15(14Q32.2) WILD-TYPE" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
  "DEL PEAK 15(14Q32.2) MUTATED" "DEL PEAK 15(14Q32.2) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 15(14Q32.2) WILD-TYPE"   "DEL PEAK 15(14Q32.2) MUTATED" 
[1] "hr=" "3.8"
D21V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 15(14Q32.2) MUTATED        13        3        10        6
  DEL PEAK 15(14Q32.2) WILD-TYPE      82        8        27        4
D21V3, multiclass
           clus
vv          DEL PEAK 15(14Q32.2) MUTATED DEL PEAK 15(14Q32.2) WILD-TYPE
  STAGE I                             13                             82
  STAGE II                             3                              8
  STAGE III                           10                             27
  STAGE IV                             6                              4
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK 15(14Q32.2) MUTATED   14  4    16
  DEL PEAK 15(14Q32.2) WILD-TYPE 88 13    28
D21V4, multiclass
       clus
vv      DEL PEAK 15(14Q32.2) MUTATED DEL PEAK 15(14Q32.2) WILD-TYPE
  T1                              14                             88
  T2                               4                             13
  T3+T4                           16                             28
                                vv
clus                             N0 N1 N2
  DEL PEAK 15(14Q32.2) MUTATED    6  8  3
  DEL PEAK 15(14Q32.2) WILD-TYPE 21  8  1
D21V5, multiclass
    clus
vv   DEL PEAK 15(14Q32.2) MUTATED DEL PEAK 15(14Q32.2) WILD-TYPE
  N0                            6                             21
  N1                            8                              8
  N2                            3                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK 15(14Q32.2) MUTATED   11  3 18
  DEL PEAK 15(14Q32.2) WILD-TYPE 51  3 64
D21V6, multiclass
    clus
vv   DEL PEAK 15(14Q32.2) MUTATED DEL PEAK 15(14Q32.2) WILD-TYPE
  M0                           11                             51
  M1                            3                              3
  MX                           18                             64
D21V7, binary
                                cls
clus                              0  1
  DEL PEAK 15(14Q32.2) MUTATED   14 20
  DEL PEAK 15(14Q32.2) WILD-TYPE 35 94
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(14Q32.2) MUTATED     14   20
  DEL PEAK 15(14Q32.2) WILD-TYPE   35   94
        clus
vv       DEL PEAK 15(14Q32.2) MUTATED DEL PEAK 15(14Q32.2) WILD-TYPE
  FEMALE                           14                             35
  MALE                             20                             94
D21V8, continuous
D21V9, continuous
D21V10, continuous

Clustering(22) Variable = DEL PEAK 16(15Q15.2) MUTATION ANALYSIS
D22V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 16(15Q15.2) MUTATED    13   7
  DEL PEAK 16(15Q15.2) WILD-TYPE 120  10
  DEL PEAK 16(15Q15.2) MUTATED DEL PEAK 16(15Q15.2) WILD-TYPE 
                            20                            130 
  DEL PEAK 16(15Q15.2) MUTATED DEL PEAK 16(15Q15.2) WILD-TYPE 
                             7                             10 
$`DEL PEAK 16(15Q15.2) MUTATED`
TCGA-A4-7286 TCGA-A4-7583 TCGA-A4-A5Y1 TCGA-AL-3466 TCGA-B1-5398 TCGA-B3-3926 
       18.21         0.10         2.86         9.63        19.56        10.09 
TCGA-B9-A5W8 TCGA-BQ-5879 TCGA-BQ-5882 TCGA-BQ-5889 TCGA-BQ-5894 TCGA-F9-A4JJ 
        6.81        22.92        21.63        10.88         2.76         3.19 
TCGA-G7-6789 TCGA-G7-6796 TCGA-G7-7502 TCGA-GL-6846 TCGA-GL-7966 TCGA-IA-A40Y 
        4.01        34.82        25.84       194.79         3.68         2.04 
TCGA-P4-A5EA TCGA-PJ-A5Z8 
        6.61         3.72 

$`DEL PEAK 16(15Q15.2) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 
        0.69        16.21        35.18        19.13         0.89         0.23 
TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 TCGA-A4-8515 
        1.61         0.07         4.60         0.03         0.07         0.69 
TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A5XZ 
        0.76         0.03         0.10         0.30         0.03         0.07 
TCGA-A4-A5Y0 TCGA-A4-A6HP TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 
        3.88         0.13        58.45        53.79        13.55        30.35 
TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-7332 TCGA-B3-3925 TCGA-B3-4103 TCGA-B3-4104 
       25.08        44.61         7.33        33.83        30.58        34.49 
TCGA-B3-8121 TCGA-B3-A6W5 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 
       12.46         2.79        50.50        28.18        26.40        20.61 
TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A44B 
        0.46         1.15        15.12        43.99        22.06         2.10 
TCGA-B9-A5W7 TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 
        9.14         0.16         3.35        86.76        19.27         8.88 
TCGA-BQ-5878 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 
       63.72        43.20        47.80        40.83        26.04        30.28 
TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 
       26.04        25.35        13.25         7.66         0.95        11.97 
TCGA-BQ-5893 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 
        7.92       123.62        48.26        96.92        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 
       61.28        50.40        49.84        26.27        20.12        11.28 
TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 
        7.63         7.04         7.17         3.81        11.61        13.61 
TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 
      129.86        35.93        37.55        24.46        13.78         3.75 
TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 
       14.63         3.02        28.80        79.86        80.88        51.19 
TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A7VF 
       61.02        54.90        34.19        19.00        24.89         0.23 
TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6797 TCGA-G7-7501 
       51.78        48.62        11.05        39.25        25.15        14.66 
TCGA-G7-A4TM TCGA-GL-7773 TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T 
        9.17        12.92         7.76         1.05         5.85         2.99 
TCGA-IA-A40U TCGA-IA-A40X TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 
       16.80        14.14        22.26        21.34         4.80         0.07 
TCGA-J7-8537 TCGA-KV-A6GD TCGA-KV-A6GE TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z 
        0.13         5.26        16.64         5.29        13.08        12.85 
TCGA-MH-A560 TCGA-MH-A561 TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 
       17.85        14.40         9.60         4.87        99.78        87.22 
TCGA-P4-A5EB TCGA-P4-A5ED TCGA-PJ-A5Z9 TCGA-Q2-A5QZ 
       84.95        92.58         5.72         1.87 

  DEL PEAK 16(15Q15.2) MUTATED DEL PEAK 16(15Q15.2) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 16(15Q15.2) MUTATED DEL PEAK 16(15Q15.2) WILD-TYPE 
                        194.79                         129.86 
  DEL PEAK 16(15Q15.2) MUTATED DEL PEAK 16(15Q15.2) WILD-TYPE 
                         8.220                         14.645 
[1] "0.1 - 194.8 (8.2)"  "0.0 - 129.9 (14.6)"
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
  "DEL PEAK 16(15Q15.2) MUTATED" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 16(15Q15.2) WILD-TYPE"   "DEL PEAK 16(15Q15.2) MUTATED" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 16(15Q15.2) WILD-TYPE" "DEL PEAK 16(15Q15.2) WILD-TYPE" 
[1] "hr=" "8.8"
D22V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 16(15Q15.2) MUTATED         5        1         9        5
  DEL PEAK 16(15Q15.2) WILD-TYPE      90       10        28        5
D22V3, multiclass
           clus
vv          DEL PEAK 16(15Q15.2) MUTATED DEL PEAK 16(15Q15.2) WILD-TYPE
  STAGE I                              5                             90
  STAGE II                             1                             10
  STAGE III                            9                             28
  STAGE IV                             5                              5
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK 16(15Q15.2) MUTATED    6  1    14
  DEL PEAK 16(15Q15.2) WILD-TYPE 96 16    30
D22V4, multiclass
       clus
vv      DEL PEAK 16(15Q15.2) MUTATED DEL PEAK 16(15Q15.2) WILD-TYPE
  T1                               6                             96
  T2                               1                             16
  T3+T4                           14                             30
                                vv
clus                             N0 N1 N2
  DEL PEAK 16(15Q15.2) MUTATED    3  9  1
  DEL PEAK 16(15Q15.2) WILD-TYPE 24  7  3
D22V5, multiclass
    clus
vv   DEL PEAK 16(15Q15.2) MUTATED DEL PEAK 16(15Q15.2) WILD-TYPE
  N0                            3                             24
  N1                            9                              7
  N2                            1                              3
                                vv
clus                             M0 M1 MX
  DEL PEAK 16(15Q15.2) MUTATED    8  3  9
  DEL PEAK 16(15Q15.2) WILD-TYPE 54  3 73
D22V6, multiclass
    clus
vv   DEL PEAK 16(15Q15.2) MUTATED DEL PEAK 16(15Q15.2) WILD-TYPE
  M0                            8                             54
  M1                            3                              3
  MX                            9                             73
D22V7, binary
                                cls
clus                               0   1
  DEL PEAK 16(15Q15.2) MUTATED     9  12
  DEL PEAK 16(15Q15.2) WILD-TYPE  40 102
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(15Q15.2) MUTATED      9   12
  DEL PEAK 16(15Q15.2) WILD-TYPE   40  102
        clus
vv       DEL PEAK 16(15Q15.2) MUTATED DEL PEAK 16(15Q15.2) WILD-TYPE
  FEMALE                            9                             40
  MALE                             12                            102
D22V8, continuous
D22V9, continuous
D22V10, continuous

Clustering(23) Variable = DEL PEAK 17(16Q24.1) MUTATION ANALYSIS
D23V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 17(16Q24.1) MUTATED     3   3
  DEL PEAK 17(16Q24.1) WILD-TYPE 130  14
  DEL PEAK 17(16Q24.1) MUTATED DEL PEAK 17(16Q24.1) WILD-TYPE 
                             6                            144 
  DEL PEAK 17(16Q24.1) MUTATED DEL PEAK 17(16Q24.1) WILD-TYPE 
                             3                             14 
$`DEL PEAK 17(16Q24.1) MUTATED`
TCGA-A4-7287 TCGA-A4-A5Y1 TCGA-BQ-5882 TCGA-BQ-5893 TCGA-G7-6793 TCGA-IA-A40X 
        0.69         2.86        21.63         7.92        11.05        14.14 

$`DEL PEAK 17(16Q24.1) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 
       18.21        16.21         0.10        35.18        19.13         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 
        0.23         1.61         0.07         4.60         0.03         0.07 
TCGA-A4-8515 TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D 
        0.69         0.76         0.03         0.10         0.30         0.03 
TCGA-A4-A5XZ TCGA-A4-A5Y0 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 
        0.07         3.88         0.13         9.63        58.45        53.79 
TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 
       13.55        30.35        25.08        44.61        19.56         7.33 
TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B3-A6W5 
       33.83        10.09        30.58        34.49        12.46         2.79 
TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 
       50.50        28.18        26.40        20.61         0.46         1.15 
TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A44B TCGA-B9-A5W7 TCGA-B9-A5W8 
       15.12        43.99        22.06         2.10         9.14         6.81 
TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 
        0.16         3.35        86.76        19.27         8.88        63.72 
TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 
       22.92        43.20        47.80        40.83        26.04        30.28 
TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 
       26.04        25.35        13.25        10.88         7.66         0.95 
TCGA-BQ-5892 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 
       11.97         2.76       123.62        48.26        96.92        93.34 
TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 
       44.84        61.28        50.40        49.84        26.27        20.12 
TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 
       11.28         7.63         7.04         7.17         3.81        11.61 
TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 
       13.61       129.86        35.93        37.55        24.46        13.78 
TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6132 
        3.75        14.63         3.02        28.80        79.86        80.88 
TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 
       51.19        61.02        54.90        34.19        19.00        24.89 
TCGA-F9-A4JJ TCGA-F9-A7VF TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6795 
        3.19         0.23         4.01        51.78        48.62        39.25 
TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-7502 TCGA-G7-A4TM TCGA-GL-6846 
       34.82        25.15        14.66        25.84         9.17       194.79 
TCGA-GL-7773 TCGA-GL-7966 TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T 
       12.92         3.68         7.76         1.05         5.85         2.99 
TCGA-IA-A40U TCGA-IA-A40Y TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 
       16.80         2.04        22.26        21.34         4.80         0.07 
TCGA-J7-8537 TCGA-KV-A6GD TCGA-KV-A6GE TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z 
        0.13         5.26        16.64         5.29        13.08        12.85 
TCGA-MH-A560 TCGA-MH-A561 TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 
       17.85        14.40         9.60         4.87        99.78        87.22 
TCGA-P4-A5EA TCGA-P4-A5EB TCGA-P4-A5ED TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 TCGA-Q2-A5QZ 
        6.61        84.95        92.58         3.72         5.72         1.87 

  DEL PEAK 17(16Q24.1) MUTATED DEL PEAK 17(16Q24.1) WILD-TYPE 
                          0.69                           0.03 
  DEL PEAK 17(16Q24.1) MUTATED DEL PEAK 17(16Q24.1) WILD-TYPE 
                         21.63                         194.79 
  DEL PEAK 17(16Q24.1) MUTATED DEL PEAK 17(16Q24.1) WILD-TYPE 
                         9.485                         14.515 
[1] "0.7 - 21.6 (9.5)"   "0.0 - 194.8 (14.5)"
                    TCGA-A4-7286                     TCGA-A4-7287 
"DEL PEAK 17(16Q24.1) WILD-TYPE"   "DEL PEAK 17(16Q24.1) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 17(16Q24.1) WILD-TYPE"   "DEL PEAK 17(16Q24.1) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 17(16Q24.1) WILD-TYPE"   "DEL PEAK 17(16Q24.1) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
  "DEL PEAK 17(16Q24.1) MUTATED" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 17(16Q24.1) WILD-TYPE"   "DEL PEAK 17(16Q24.1) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
  "DEL PEAK 17(16Q24.1) MUTATED" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
"DEL PEAK 17(16Q24.1) WILD-TYPE"   "DEL PEAK 17(16Q24.1) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 17(16Q24.1) WILD-TYPE"   "DEL PEAK 17(16Q24.1) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 17(16Q24.1) WILD-TYPE"   "DEL PEAK 17(16Q24.1) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
  "DEL PEAK 17(16Q24.1) MUTATED" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 17(16Q24.1) WILD-TYPE"   "DEL PEAK 17(16Q24.1) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
  "DEL PEAK 17(16Q24.1) MUTATED" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
"DEL PEAK 17(16Q24.1) WILD-TYPE"   "DEL PEAK 17(16Q24.1) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 17(16Q24.1) WILD-TYPE"   "DEL PEAK 17(16Q24.1) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 17(16Q24.1) WILD-TYPE"   "DEL PEAK 17(16Q24.1) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
  "DEL PEAK 17(16Q24.1) MUTATED" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 17(16Q24.1) WILD-TYPE"   "DEL PEAK 17(16Q24.1) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
  "DEL PEAK 17(16Q24.1) MUTATED" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
[1] "hr=" "13" 
D23V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 17(16Q24.1) MUTATED         2        0         3        2
  DEL PEAK 17(16Q24.1) WILD-TYPE      93       11        34        8
D23V3, multiclass
           clus
vv          DEL PEAK 17(16Q24.1) MUTATED DEL PEAK 17(16Q24.1) WILD-TYPE
  STAGE I                              2                             93
  STAGE II                             0                             11
  STAGE III                            3                             34
  STAGE IV                             2                              8
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK 17(16Q24.1) MUTATED    3  0     4
  DEL PEAK 17(16Q24.1) WILD-TYPE 99 17    40
D23V4, multiclass
       clus
vv      DEL PEAK 17(16Q24.1) MUTATED DEL PEAK 17(16Q24.1) WILD-TYPE
  T1                               3                             99
  T2                               0                             17
  T3+T4                            4                             40
                                vv
clus                             N0 N1 N2
  DEL PEAK 17(16Q24.1) MUTATED    1  2  1
  DEL PEAK 17(16Q24.1) WILD-TYPE 26 14  3
D23V5, multiclass
    clus
vv   DEL PEAK 17(16Q24.1) MUTATED DEL PEAK 17(16Q24.1) WILD-TYPE
  N0                            1                             26
  N1                            2                             14
  N2                            1                              3
                                vv
clus                             M0 M1 MX
  DEL PEAK 17(16Q24.1) MUTATED    2  1  4
  DEL PEAK 17(16Q24.1) WILD-TYPE 60  5 78
D23V6, multiclass
    clus
vv   DEL PEAK 17(16Q24.1) MUTATED DEL PEAK 17(16Q24.1) WILD-TYPE
  M0                            2                             60
  M1                            1                              5
  MX                            4                             78
D23V7, binary
                                cls
clus                               0   1
  DEL PEAK 17(16Q24.1) MUTATED     4   3
  DEL PEAK 17(16Q24.1) WILD-TYPE  45 111
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(16Q24.1) MUTATED      4    3
  DEL PEAK 17(16Q24.1) WILD-TYPE   45  111
        clus
vv       DEL PEAK 17(16Q24.1) MUTATED DEL PEAK 17(16Q24.1) WILD-TYPE
  FEMALE                            4                             45
  MALE                              3                            111
D23V8, continuous
[1] "Remove cluster labels:"       "DEL PEAK 17(16Q24.1) MUTATED"
clus
  DEL PEAK 17(16Q24.1) MUTATED DEL PEAK 17(16Q24.1) WILD-TYPE 
                             2                             37 
                    TCGA-A4-7286                     TCGA-A4-7828 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-8310                     TCGA-A4-8311 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-8312                     TCGA-A4-8518 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-8630                     TCGA-A4-A4ZT 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-A57E                     TCGA-A4-A5DU 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-A4-A5XZ                     TCGA-A4-A6HP 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-AL-3466                     TCGA-DW-5560 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-EV-5901                     TCGA-EV-5902 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-EV-5903                     TCGA-G7-6790 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-G7-6796                     TCGA-G7-6797 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-G7-7501                     TCGA-G7-7502 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-G7-A4TM                     TCGA-IA-A40U 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-IA-A40Y                     TCGA-J7-8537 
"DEL PEAK 17(16Q24.1) WILD-TYPE" "DEL PEAK 17(16Q24.1) WILD-TYPE" 
                    TCGA-Q2-A5QZ 
"DEL PEAK 17(16Q24.1) WILD-TYPE" 
D23V9, continuous
D23V10, continuous

Clustering(24) Variable = DEL PEAK 18(19P13.3) MUTATION ANALYSIS
D24V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 18(19P13.3) MUTATED    14   2
  DEL PEAK 18(19P13.3) WILD-TYPE 119  15
  DEL PEAK 18(19P13.3) MUTATED DEL PEAK 18(19P13.3) WILD-TYPE 
                            16                            134 
  DEL PEAK 18(19P13.3) MUTATED DEL PEAK 18(19P13.3) WILD-TYPE 
                             2                             15 
$`DEL PEAK 18(19P13.3) MUTATED`
TCGA-A4-7286 TCGA-A4-8310 TCGA-A4-8517 TCGA-A4-A5Y1 TCGA-AL-3466 TCGA-B1-7332 
       18.21         0.03         0.03         2.86         9.63         7.33 
TCGA-B9-A44B TCGA-B9-A5W7 TCGA-BQ-5876 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-G7-6789 
        2.10         9.14        19.27         7.66         0.95         4.01 
TCGA-G7-7502 TCGA-IA-A40Y TCGA-J7-8537 TCGA-Q2-A5QZ 
       25.84         2.04         0.13         1.87 

$`DEL PEAK 18(19P13.3) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 
        0.69        16.21         0.10        35.18        19.13         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8311 TCGA-A4-8515 
        0.23         1.61         0.07         4.60         0.07         0.69 
TCGA-A4-8516 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A5XZ TCGA-A4-A5Y0 
        0.76         0.10         0.30         0.03         0.07         3.88 
TCGA-A4-A6HP TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 
        0.13        58.45        53.79        13.55        30.35        25.08 
TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 
       44.61        19.56        33.83        10.09        30.58        34.49 
TCGA-B3-8121 TCGA-B3-A6W5 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 
       12.46         2.79        50.50        28.18        26.40        20.61 
TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A5W8 
        0.46         1.15        15.12        43.99        22.06         6.81 
TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 
        0.16         3.35        86.76         8.88        63.72        22.92 
TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 
       43.20        47.80        21.63        40.83        26.04        30.28 
TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5892 TCGA-BQ-5893 
       26.04        25.35        13.25        10.88        11.97         7.92 
TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 
        2.76       123.62        48.26        96.92        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 
       61.28        50.40        49.84        26.27        20.12        11.28 
TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 
        7.63         7.04         7.17         3.81        11.61        13.61 
TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 
      129.86        35.93        37.55        24.46        13.78         3.75 
TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 
       14.63         3.02        28.80        79.86        80.88        51.19 
TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A4JJ 
       61.02        54.90        34.19        19.00        24.89         3.19 
TCGA-F9-A7VF TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 
        0.23        51.78        48.62        11.05        39.25        34.82 
TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 TCGA-GL-7966 
       25.15        14.66         9.17       194.79        12.92         3.68 
TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U TCGA-IA-A40X 
        7.76         1.05         5.85         2.99        16.80        14.14 
TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-KV-A6GD TCGA-KV-A6GE 
       22.26        21.34         4.80         0.07         5.26        16.64 
TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 TCGA-MH-A562 
        5.29        13.08        12.85        17.85        14.40         9.60 
TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EA TCGA-P4-A5EB TCGA-P4-A5ED 
        4.87        99.78        87.22         6.61        84.95        92.58 
TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 
        3.72         5.72 

  DEL PEAK 18(19P13.3) MUTATED DEL PEAK 18(19P13.3) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 18(19P13.3) MUTATED DEL PEAK 18(19P13.3) WILD-TYPE 
                         25.84                         194.79 
  DEL PEAK 18(19P13.3) MUTATED DEL PEAK 18(19P13.3) WILD-TYPE 
                         3.435                         15.665 
[1] "0.0 - 25.8 (3.4)"   "0.0 - 194.8 (15.7)"
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 18(19P13.3) MUTATED" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
  "DEL PEAK 18(19P13.3) MUTATED" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
  "DEL PEAK 18(19P13.3) MUTATED" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 18(19P13.3) MUTATED" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK 18(19P13.3) MUTATED" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
  "DEL PEAK 18(19P13.3) MUTATED" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 18(19P13.3) MUTATED" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
  "DEL PEAK 18(19P13.3) MUTATED" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
  "DEL PEAK 18(19P13.3) MUTATED" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 18(19P13.3) MUTATED" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK 18(19P13.3) MUTATED" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
  "DEL PEAK 18(19P13.3) MUTATED" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 18(19P13.3) MUTATED" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
  "DEL PEAK 18(19P13.3) MUTATED" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
  "DEL PEAK 18(19P13.3) MUTATED" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 18(19P13.3) MUTATED" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
  "DEL PEAK 18(19P13.3) MUTATED" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
  "DEL PEAK 18(19P13.3) MUTATED" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 18(19P13.3) WILD-TYPE"   "DEL PEAK 18(19P13.3) MUTATED" 
[1] "hr=" "4.8"
D24V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 18(19P13.3) MUTATED         4        1         8        2
  DEL PEAK 18(19P13.3) WILD-TYPE      91       10        29        8
D24V3, multiclass
           clus
vv          DEL PEAK 18(19P13.3) MUTATED DEL PEAK 18(19P13.3) WILD-TYPE
  STAGE I                              4                             91
  STAGE II                             1                             10
  STAGE III                            8                             29
  STAGE IV                             2                              8
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK 18(19P13.3) MUTATED    5  1    10
  DEL PEAK 18(19P13.3) WILD-TYPE 97 16    34
D24V4, multiclass
       clus
vv      DEL PEAK 18(19P13.3) MUTATED DEL PEAK 18(19P13.3) WILD-TYPE
  T1                               5                             97
  T2                               1                             16
  T3+T4                           10                             34
                                vv
clus                             N0 N1 N2
  DEL PEAK 18(19P13.3) MUTATED    2  4  1
  DEL PEAK 18(19P13.3) WILD-TYPE 25 12  3
D24V5, multiclass
    clus
vv   DEL PEAK 18(19P13.3) MUTATED DEL PEAK 18(19P13.3) WILD-TYPE
  N0                            2                             25
  N1                            4                             12
  N2                            1                              3
                                vv
clus                             M0 M1 MX
  DEL PEAK 18(19P13.3) MUTATED    4  1  8
  DEL PEAK 18(19P13.3) WILD-TYPE 58  5 74
D24V6, multiclass
    clus
vv   DEL PEAK 18(19P13.3) MUTATED DEL PEAK 18(19P13.3) WILD-TYPE
  M0                            4                             58
  M1                            1                              5
  MX                            8                             74
D24V7, binary
                                cls
clus                               0   1
  DEL PEAK 18(19P13.3) MUTATED     6  10
  DEL PEAK 18(19P13.3) WILD-TYPE  43 104
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(19P13.3) MUTATED      6   10
  DEL PEAK 18(19P13.3) WILD-TYPE   43  104
        clus
vv       DEL PEAK 18(19P13.3) MUTATED DEL PEAK 18(19P13.3) WILD-TYPE
  FEMALE                            6                             43
  MALE                             10                            104
D24V8, continuous
D24V9, continuous
[1] "Remove cluster labels:"       "DEL PEAK 18(19P13.3) MUTATED"
clus
  DEL PEAK 18(19P13.3) MUTATED DEL PEAK 18(19P13.3) WILD-TYPE 
                             2                              7 
                    TCGA-B9-A69E                     TCGA-GL-7773 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-P4-A5E7                     TCGA-P4-A5EB 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-PJ-A5Z9 
"DEL PEAK 18(19P13.3) WILD-TYPE" 
D24V10, continuous
[1] "Remove cluster labels:"       "DEL PEAK 18(19P13.3) MUTATED"
clus
  DEL PEAK 18(19P13.3) MUTATED DEL PEAK 18(19P13.3) WILD-TYPE 
                             1                              5 
                    TCGA-AL-3472                     TCGA-B9-A69E 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-GL-7773                     TCGA-IA-A40U 
"DEL PEAK 18(19P13.3) WILD-TYPE" "DEL PEAK 18(19P13.3) WILD-TYPE" 
                    TCGA-PJ-A5Z9 
"DEL PEAK 18(19P13.3) WILD-TYPE" 

Clustering(25) Variable = DEL PEAK 19(19Q13.42) MUTATION ANALYSIS
D25V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 19(19Q13.42) MUTATED    13   2
  DEL PEAK 19(19Q13.42) WILD-TYPE 120  15
  DEL PEAK 19(19Q13.42) MUTATED DEL PEAK 19(19Q13.42) WILD-TYPE 
                             15                             135 
  DEL PEAK 19(19Q13.42) MUTATED DEL PEAK 19(19Q13.42) WILD-TYPE 
                              2                              15 
$`DEL PEAK 19(19Q13.42) MUTATED`
TCGA-A4-7286 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8517 TCGA-A4-A5Y1 TCGA-B1-7332 
       18.21         4.60         0.03         0.03         2.86         7.33 
TCGA-BQ-5885 TCGA-BQ-5891 TCGA-BQ-7048 TCGA-BQ-7060 TCGA-F9-A4JJ TCGA-G7-6789 
       30.28         0.95        93.34         7.04         3.19         4.01 
TCGA-G7-7502 TCGA-IA-A40Y TCGA-Q2-A5QZ 
       25.84         2.04         1.87 

$`DEL PEAK 19(19Q13.42) WILD-TYPE`
TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 
        0.69        16.21         0.10        35.18        19.13         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8311 TCGA-A4-8515 TCGA-A4-8516 
        0.23         1.61         0.07         0.07         0.69         0.76 
TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A5XZ TCGA-A4-A5Y0 TCGA-A4-A6HP 
        0.10         0.30         0.03         0.07         3.88         0.13 
TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 
        9.63        58.45        53.79        13.55        30.35        25.08 
TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 
       44.61        19.56        33.83        10.09        30.58        34.49 
TCGA-B3-8121 TCGA-B3-A6W5 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 
       12.46         2.79        50.50        28.18        26.40        20.61 
TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A44B 
        0.46         1.15        15.12        43.99        22.06         2.10 
TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5876 
        9.14         6.81         0.16         3.35        86.76        19.27 
TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 
        8.88        63.72        22.92        43.20        47.80        21.63 
TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 
       40.83        26.04        26.04        25.35        13.25        10.88 
TCGA-BQ-5890 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 
        7.66        11.97         7.92         2.76       123.62        48.26 
TCGA-BQ-7046 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 
       96.92        44.84        61.28        50.40        49.84        26.27 
TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 
       20.12        11.28         7.63         7.17         3.81        11.61 
TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 
       13.61       129.86        35.93        37.55        24.46        13.78 
TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6132 
        3.75        14.63         3.02        28.80        79.86        80.88 
TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 
       51.19        61.02        54.90        34.19        19.00        24.89 
TCGA-F9-A7VF TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 
        0.23        51.78        48.62        11.05        39.25        34.82 
TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 TCGA-GL-7966 
       25.15        14.66         9.17       194.79        12.92         3.68 
TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U TCGA-IA-A40X 
        7.76         1.05         5.85         2.99        16.80        14.14 
TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-J7-8537 TCGA-KV-A6GD 
       22.26        21.34         4.80         0.07         0.13         5.26 
TCGA-KV-A6GE TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 
       16.64         5.29        13.08        12.85        17.85        14.40 
TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EA TCGA-P4-A5EB 
        9.60         4.87        99.78        87.22         6.61        84.95 
TCGA-P4-A5ED TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 
       92.58         3.72         5.72 

  DEL PEAK 19(19Q13.42) MUTATED DEL PEAK 19(19Q13.42) WILD-TYPE 
                           0.03                            0.03 
  DEL PEAK 19(19Q13.42) MUTATED DEL PEAK 19(19Q13.42) WILD-TYPE 
                          93.34                          194.79 
  DEL PEAK 19(19Q13.42) MUTATED DEL PEAK 19(19Q13.42) WILD-TYPE 
                           4.01                           14.66 
[1] "0.0 - 93.3 (4.0)"   "0.0 - 194.8 (14.7)"
                     TCGA-A4-7286                      TCGA-A4-7287 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7288                      TCGA-A4-7583 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7585                      TCGA-A4-7732 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7734                      TCGA-A4-7915 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7996                      TCGA-A4-7997 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-8098                      TCGA-A4-8310 
  "DEL PEAK 19(19Q13.42) MUTATED"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-A4-8311                      TCGA-A4-8515 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-8516                      TCGA-A4-8517 
"DEL PEAK 19(19Q13.42) WILD-TYPE"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-A4-8518                      TCGA-A4-8630 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-A48D                      TCGA-A4-A5XZ 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-A5Y0                      TCGA-A4-A5Y1 
"DEL PEAK 19(19Q13.42) WILD-TYPE"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-A4-A6HP                      TCGA-AL-3466 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3467                      TCGA-AL-3468 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3471                      TCGA-AL-3472 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3473                      TCGA-AL-7173 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B1-5398                      TCGA-B1-7332 
"DEL PEAK 19(19Q13.42) WILD-TYPE"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-B3-3925                      TCGA-B3-3926 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B3-4103                      TCGA-B3-4104 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B3-8121                      TCGA-B3-A6W5 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4113                      TCGA-B9-4114 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4115                      TCGA-B9-4116 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4117                      TCGA-B9-4617 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-5155                      TCGA-B9-5156 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-7268                      TCGA-B9-A44B 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-A5W7                      TCGA-B9-A5W8 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-A5W9                      TCGA-B9-A69E 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5875                      TCGA-BQ-5876 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5877                      TCGA-BQ-5878 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5879                      TCGA-BQ-5880 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5881                      TCGA-BQ-5882 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5883                      TCGA-BQ-5884 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5885                      TCGA-BQ-5886 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5887                      TCGA-BQ-5888 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5889                      TCGA-BQ-5890 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5891                      TCGA-BQ-5892 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5893                      TCGA-BQ-5894 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7044                      TCGA-BQ-7045 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7046                      TCGA-BQ-7048 
"DEL PEAK 19(19Q13.42) WILD-TYPE"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-BQ-7049                      TCGA-BQ-7050 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7051                      TCGA-BQ-7053 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7055                      TCGA-BQ-7056 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7058                      TCGA-BQ-7059 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7060                      TCGA-BQ-7061 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7062                      TCGA-DW-5560 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DW-5561                      TCGA-DW-7834 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7836                      TCGA-DW-7837 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7838                      TCGA-DW-7839 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7840                      TCGA-DW-7841 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7842                      TCGA-DW-7963 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6131                      TCGA-DZ-6132 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6133                      TCGA-DZ-6134 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6135                      TCGA-EV-5901 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-EV-5902                      TCGA-EV-5903 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-F9-A4JJ                      TCGA-F9-A7VF 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6789                      TCGA-G7-6790 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6792                      TCGA-G7-6793 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6795                      TCGA-G7-6796 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6797                      TCGA-G7-7501 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-G7-7502                      TCGA-G7-A4TM 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-GL-6846                      TCGA-GL-7773 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-GL-7966                      TCGA-GL-8500 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-GL-A4EM                      TCGA-GL-A59R 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-GL-A59T                      TCGA-IA-A40U 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-IA-A40X                      TCGA-IA-A40Y 
"DEL PEAK 19(19Q13.42) WILD-TYPE"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-IZ-8195                      TCGA-IZ-8196 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-IZ-A6M8                      TCGA-IZ-A6M9 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-J7-8537                      TCGA-KV-A6GD 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-KV-A6GE                      TCGA-KV-A74V 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-MH-A55W                      TCGA-MH-A55Z 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-MH-A560                      TCGA-MH-A561 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-MH-A562                      TCGA-O9-A75Z 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-P4-A5E6                      TCGA-P4-A5E7 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-P4-A5EA                      TCGA-P4-A5EB 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-P4-A5ED                      TCGA-PJ-A5Z8 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-PJ-A5Z9                      TCGA-Q2-A5QZ 
"DEL PEAK 19(19Q13.42) WILD-TYPE"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-A4-7286                      TCGA-A4-7287 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7288                      TCGA-A4-7583 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7585                      TCGA-A4-7732 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7734                      TCGA-A4-7915 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7996                      TCGA-A4-7997 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-8098                      TCGA-A4-8310 
  "DEL PEAK 19(19Q13.42) MUTATED"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-A4-8311                      TCGA-A4-8515 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-8516                      TCGA-A4-8517 
"DEL PEAK 19(19Q13.42) WILD-TYPE"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-A4-8518                      TCGA-A4-8630 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-A48D                      TCGA-A4-A5XZ 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-A5Y0                      TCGA-A4-A5Y1 
"DEL PEAK 19(19Q13.42) WILD-TYPE"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-A4-A6HP                      TCGA-AL-3466 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3467                      TCGA-AL-3468 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3471                      TCGA-AL-3472 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3473                      TCGA-AL-7173 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B1-5398                      TCGA-B1-7332 
"DEL PEAK 19(19Q13.42) WILD-TYPE"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-B3-3925                      TCGA-B3-3926 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B3-4103                      TCGA-B3-4104 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B3-8121                      TCGA-B3-A6W5 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4113                      TCGA-B9-4114 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4115                      TCGA-B9-4116 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4117                      TCGA-B9-4617 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-5155                      TCGA-B9-5156 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-7268                      TCGA-B9-A44B 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-A5W7                      TCGA-B9-A5W8 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-A5W9                      TCGA-B9-A69E 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5875                      TCGA-BQ-5876 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5877                      TCGA-BQ-5878 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5879                      TCGA-BQ-5880 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5881                      TCGA-BQ-5882 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5883                      TCGA-BQ-5884 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5885                      TCGA-BQ-5886 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5887                      TCGA-BQ-5888 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5889                      TCGA-BQ-5890 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5891                      TCGA-BQ-5892 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5893                      TCGA-BQ-5894 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7044                      TCGA-BQ-7045 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7046                      TCGA-BQ-7048 
"DEL PEAK 19(19Q13.42) WILD-TYPE"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-BQ-7049                      TCGA-BQ-7050 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7051                      TCGA-BQ-7053 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7055                      TCGA-BQ-7056 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7058                      TCGA-BQ-7059 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7060                      TCGA-BQ-7061 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7062                      TCGA-DW-5560 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DW-5561                      TCGA-DW-7834 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7836                      TCGA-DW-7837 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7838                      TCGA-DW-7839 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7840                      TCGA-DW-7841 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7842                      TCGA-DW-7963 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6131                      TCGA-DZ-6132 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6133                      TCGA-DZ-6134 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6135                      TCGA-EV-5901 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-EV-5902                      TCGA-EV-5903 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-F9-A4JJ                      TCGA-F9-A7VF 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6789                      TCGA-G7-6790 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6792                      TCGA-G7-6793 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6795                      TCGA-G7-6796 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6797                      TCGA-G7-7501 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-G7-7502                      TCGA-G7-A4TM 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-GL-6846                      TCGA-GL-7773 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-GL-7966                      TCGA-GL-8500 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-GL-A4EM                      TCGA-GL-A59R 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-GL-A59T                      TCGA-IA-A40U 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-IA-A40X                      TCGA-IA-A40Y 
"DEL PEAK 19(19Q13.42) WILD-TYPE"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-IZ-8195                      TCGA-IZ-8196 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-IZ-A6M8                      TCGA-IZ-A6M9 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-J7-8537                      TCGA-KV-A6GD 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-KV-A6GE                      TCGA-KV-A74V 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-MH-A55W                      TCGA-MH-A55Z 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-MH-A560                      TCGA-MH-A561 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-MH-A562                      TCGA-O9-A75Z 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-P4-A5E6                      TCGA-P4-A5E7 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-P4-A5EA                      TCGA-P4-A5EB 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-P4-A5ED                      TCGA-PJ-A5Z8 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-PJ-A5Z9                      TCGA-Q2-A5QZ 
"DEL PEAK 19(19Q13.42) WILD-TYPE"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-A4-7286                      TCGA-A4-7287 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7288                      TCGA-A4-7583 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7585                      TCGA-A4-7732 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7734                      TCGA-A4-7915 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7996                      TCGA-A4-7997 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-8098                      TCGA-A4-8310 
  "DEL PEAK 19(19Q13.42) MUTATED"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-A4-8311                      TCGA-A4-8515 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-8516                      TCGA-A4-8517 
"DEL PEAK 19(19Q13.42) WILD-TYPE"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-A4-8518                      TCGA-A4-8630 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-A48D                      TCGA-A4-A5XZ 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-A4-A5Y0                      TCGA-A4-A5Y1 
"DEL PEAK 19(19Q13.42) WILD-TYPE"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-A4-A6HP                      TCGA-AL-3466 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3467                      TCGA-AL-3468 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3471                      TCGA-AL-3472 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3473                      TCGA-AL-7173 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B1-5398                      TCGA-B1-7332 
"DEL PEAK 19(19Q13.42) WILD-TYPE"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-B3-3925                      TCGA-B3-3926 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B3-4103                      TCGA-B3-4104 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B3-8121                      TCGA-B3-A6W5 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4113                      TCGA-B9-4114 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4115                      TCGA-B9-4116 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4117                      TCGA-B9-4617 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-5155                      TCGA-B9-5156 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-7268                      TCGA-B9-A44B 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-A5W7                      TCGA-B9-A5W8 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-B9-A5W9                      TCGA-B9-A69E 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5875                      TCGA-BQ-5876 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5877                      TCGA-BQ-5878 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5879                      TCGA-BQ-5880 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5881                      TCGA-BQ-5882 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5883                      TCGA-BQ-5884 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5885                      TCGA-BQ-5886 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5887                      TCGA-BQ-5888 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5889                      TCGA-BQ-5890 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5891                      TCGA-BQ-5892 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5893                      TCGA-BQ-5894 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7044                      TCGA-BQ-7045 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7046                      TCGA-BQ-7048 
"DEL PEAK 19(19Q13.42) WILD-TYPE"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-BQ-7049                      TCGA-BQ-7050 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7051                      TCGA-BQ-7053 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7055                      TCGA-BQ-7056 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7058                      TCGA-BQ-7059 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7060                      TCGA-BQ-7061 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7062                      TCGA-DW-5560 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DW-5561                      TCGA-DW-7834 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7836                      TCGA-DW-7837 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7838                      TCGA-DW-7839 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7840                      TCGA-DW-7841 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7842                      TCGA-DW-7963 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6131                      TCGA-DZ-6132 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6133                      TCGA-DZ-6134 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6135                      TCGA-EV-5901 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-EV-5902                      TCGA-EV-5903 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-F9-A4JJ                      TCGA-F9-A7VF 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6789                      TCGA-G7-6790 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6792                      TCGA-G7-6793 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6795                      TCGA-G7-6796 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6797                      TCGA-G7-7501 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-G7-7502                      TCGA-G7-A4TM 
  "DEL PEAK 19(19Q13.42) MUTATED" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-GL-6846                      TCGA-GL-7773 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-GL-7966                      TCGA-GL-8500 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-GL-A4EM                      TCGA-GL-A59R 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-GL-A59T                      TCGA-IA-A40U 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-IA-A40X                      TCGA-IA-A40Y 
"DEL PEAK 19(19Q13.42) WILD-TYPE"   "DEL PEAK 19(19Q13.42) MUTATED" 
                     TCGA-IZ-8195                      TCGA-IZ-8196 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-IZ-A6M8                      TCGA-IZ-A6M9 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-J7-8537                      TCGA-KV-A6GD 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-KV-A6GE                      TCGA-KV-A74V 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-MH-A55W                      TCGA-MH-A55Z 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-MH-A560                      TCGA-MH-A561 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-MH-A562                      TCGA-O9-A75Z 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-P4-A5E6                      TCGA-P4-A5E7 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-P4-A5EA                      TCGA-P4-A5EB 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-P4-A5ED                      TCGA-PJ-A5Z8 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-PJ-A5Z9                      TCGA-Q2-A5QZ 
"DEL PEAK 19(19Q13.42) WILD-TYPE"   "DEL PEAK 19(19Q13.42) MUTATED" 
[1] "hr=" "2.7"
D25V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 19(19Q13.42) MUTATED         4        1         8        1
  DEL PEAK 19(19Q13.42) WILD-TYPE      91       10        29        9
D25V3, multiclass
           clus
vv          DEL PEAK 19(19Q13.42) MUTATED DEL PEAK 19(19Q13.42) WILD-TYPE
  STAGE I                               4                              91
  STAGE II                              1                              10
  STAGE III                             8                              29
  STAGE IV                              1                               9
                                 vv
clus                              T1 T2 T3+T4
  DEL PEAK 19(19Q13.42) MUTATED    5  1     9
  DEL PEAK 19(19Q13.42) WILD-TYPE 97 16    35
D25V4, multiclass
       clus
vv      DEL PEAK 19(19Q13.42) MUTATED DEL PEAK 19(19Q13.42) WILD-TYPE
  T1                                5                              97
  T2                                1                              16
  T3+T4                             9                              35
                                 vv
clus                              N0 N1 N2
  DEL PEAK 19(19Q13.42) MUTATED    3  2  1
  DEL PEAK 19(19Q13.42) WILD-TYPE 24 14  3
D25V5, multiclass
    clus
vv   DEL PEAK 19(19Q13.42) MUTATED DEL PEAK 19(19Q13.42) WILD-TYPE
  N0                             3                              24
  N1                             2                              14
  N2                             1                               3
                                 vv
clus                              M0 M1 MX
  DEL PEAK 19(19Q13.42) MUTATED    4  0 10
  DEL PEAK 19(19Q13.42) WILD-TYPE 58  6 72
D25V6, multiclass
    clus
vv   DEL PEAK 19(19Q13.42) MUTATED DEL PEAK 19(19Q13.42) WILD-TYPE
  M0                             4                              58
  M1                             0                               6
  MX                            10                              72
D25V7, binary
                                 cls
clus                                0   1
  DEL PEAK 19(19Q13.42) MUTATED     6   9
  DEL PEAK 19(19Q13.42) WILD-TYPE  43 105
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 19(19Q13.42) MUTATED      6    9
  DEL PEAK 19(19Q13.42) WILD-TYPE   43  105
        clus
vv       DEL PEAK 19(19Q13.42) MUTATED DEL PEAK 19(19Q13.42) WILD-TYPE
  FEMALE                             6                              43
  MALE                               9                             105
D25V8, continuous
D25V9, continuous
[1] "Remove cluster labels:"        "DEL PEAK 19(19Q13.42) MUTATED"
clus
  DEL PEAK 19(19Q13.42) MUTATED DEL PEAK 19(19Q13.42) WILD-TYPE 
                              1                               8 
                     TCGA-B9-A44B                      TCGA-B9-A69E 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-GL-7773                      TCGA-GL-A59T 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-IA-A40U                      TCGA-P4-A5E7 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-P4-A5EB                      TCGA-PJ-A5Z9 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
D25V10, continuous
[1] "Remove cluster labels:"        "DEL PEAK 19(19Q13.42) MUTATED"
clus
  DEL PEAK 19(19Q13.42) MUTATED DEL PEAK 19(19Q13.42) WILD-TYPE 
                              1                               5 
                     TCGA-AL-3472                      TCGA-B9-A69E 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-GL-7773                      TCGA-IA-A40U 
"DEL PEAK 19(19Q13.42) WILD-TYPE" "DEL PEAK 19(19Q13.42) WILD-TYPE" 
                     TCGA-PJ-A5Z9 
"DEL PEAK 19(19Q13.42) WILD-TYPE" 

Clustering(26) Variable = DEL PEAK 20(21Q22.3) MUTATION ANALYSIS
D26V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 20(21Q22.3) MUTATED    23   3
  DEL PEAK 20(21Q22.3) WILD-TYPE 110  14
  DEL PEAK 20(21Q22.3) MUTATED DEL PEAK 20(21Q22.3) WILD-TYPE 
                            26                            124 
  DEL PEAK 20(21Q22.3) MUTATED DEL PEAK 20(21Q22.3) WILD-TYPE 
                             3                             14 
$`DEL PEAK 20(21Q22.3) MUTATED`
TCGA-A4-7288 TCGA-A4-8516 TCGA-A4-A5XZ TCGA-AL-3468 TCGA-B3-3925 TCGA-B3-3926 
       16.21         0.76         0.07        53.79        33.83        10.09 
TCGA-B9-4114 TCGA-B9-A44B TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-BQ-5875 TCGA-BQ-5885 
       28.18         2.10         9.14         6.81        86.76        30.28 
TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5894 TCGA-BQ-7061 TCGA-DZ-6134 TCGA-F9-A4JJ 
       10.88         7.66         2.76         7.17        61.02         3.19 
TCGA-G7-6789 TCGA-G7-6796 TCGA-GL-7966 TCGA-IA-A40U TCGA-IA-A40Y TCGA-KV-A6GE 
        4.01        34.82         3.68        16.80         2.04        16.64 
TCGA-KV-A74V TCGA-PJ-A5Z9 
        5.29         5.72 

$`DEL PEAK 20(21Q22.3) WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 
       18.21         0.69         0.10        35.18        19.13         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 
        0.23         1.61         0.07         4.60         0.03         0.07 
TCGA-A4-8515 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A5Y0 
        0.69         0.03         0.10         0.30         0.03         3.88 
TCGA-A4-A5Y1 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3471 TCGA-AL-3472 
        2.86         0.13         9.63        58.45        13.55        30.35 
TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B1-7332 TCGA-B3-4103 TCGA-B3-4104 
       25.08        44.61        19.56         7.33        30.58        34.49 
TCGA-B3-8121 TCGA-B3-A6W5 TCGA-B9-4113 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 
       12.46         2.79        50.50        26.40        20.61         0.46 
TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A5W9 TCGA-B9-A69E 
        1.15        15.12        43.99        22.06         0.16         3.35 
TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 
       19.27         8.88        63.72        22.92        43.20        47.80 
TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 
       21.63        40.83        26.04        26.04        25.35        13.25 
TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 
        0.95        11.97         7.92       123.62        48.26        96.92 
TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 
       93.34        44.84        61.28        50.40        49.84        26.27 
TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7062 TCGA-DW-5560 
       20.12        11.28         7.63         7.04         3.81        11.61 
TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 
       13.61       129.86        35.93        37.55        24.46        13.78 
TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6132 
        3.75        14.63         3.02        28.80        79.86        80.88 
TCGA-DZ-6133 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A7VF 
       51.19        54.90        34.19        19.00        24.89         0.23 
TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6797 TCGA-G7-7501 
       51.78        48.62        11.05        39.25        25.15        14.66 
TCGA-G7-7502 TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 TCGA-GL-8500 TCGA-GL-A4EM 
       25.84         9.17       194.79        12.92         7.76         1.05 
TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40X TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 
        5.85         2.99        14.14        22.26        21.34         4.80 
TCGA-IZ-A6M9 TCGA-J7-8537 TCGA-KV-A6GD TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 
        0.07         0.13         5.26        13.08        12.85        17.85 
TCGA-MH-A561 TCGA-MH-A562 TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EA 
       14.40         9.60         4.87        99.78        87.22         6.61 
TCGA-P4-A5EB TCGA-P4-A5ED TCGA-PJ-A5Z8 TCGA-Q2-A5QZ 
       84.95        92.58         3.72         1.87 

  DEL PEAK 20(21Q22.3) MUTATED DEL PEAK 20(21Q22.3) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 20(21Q22.3) MUTATED DEL PEAK 20(21Q22.3) WILD-TYPE 
                         86.76                         194.79 
  DEL PEAK 20(21Q22.3) MUTATED DEL PEAK 20(21Q22.3) WILD-TYPE 
                         8.400                         14.645 
[1] "0.1 - 86.8 (8.4)"   "0.0 - 194.8 (14.6)"
                    TCGA-A4-7286                     TCGA-A4-7287 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
  "DEL PEAK 20(21Q22.3) MUTATED"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
  "DEL PEAK 20(21Q22.3) MUTATED"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK 20(21Q22.3) MUTATED"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
  "DEL PEAK 20(21Q22.3) MUTATED"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
  "DEL PEAK 20(21Q22.3) MUTATED"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
  "DEL PEAK 20(21Q22.3) MUTATED"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK 20(21Q22.3) MUTATED"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
  "DEL PEAK 20(21Q22.3) MUTATED"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
  "DEL PEAK 20(21Q22.3) MUTATED"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
  "DEL PEAK 20(21Q22.3) MUTATED"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
  "DEL PEAK 20(21Q22.3) MUTATED"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 20(21Q22.3) WILD-TYPE"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
  "DEL PEAK 20(21Q22.3) MUTATED"   "DEL PEAK 20(21Q22.3) MUTATED" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
  "DEL PEAK 20(21Q22.3) MUTATED" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
[1] "hr=" "1.4"
D26V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 20(21Q22.3) MUTATED        11        3        11        4
  DEL PEAK 20(21Q22.3) WILD-TYPE      84        8        26        6
D26V3, multiclass
           clus
vv          DEL PEAK 20(21Q22.3) MUTATED DEL PEAK 20(21Q22.3) WILD-TYPE
  STAGE I                             11                             84
  STAGE II                             3                              8
  STAGE III                           11                             26
  STAGE IV                             4                              6
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK 20(21Q22.3) MUTATED   12  5    14
  DEL PEAK 20(21Q22.3) WILD-TYPE 90 12    30
D26V4, multiclass
       clus
vv      DEL PEAK 20(21Q22.3) MUTATED DEL PEAK 20(21Q22.3) WILD-TYPE
  T1                              12                             90
  T2                               5                             12
  T3+T4                           14                             30
                                vv
clus                             N0 N1 N2
  DEL PEAK 20(21Q22.3) MUTATED    5  4  1
  DEL PEAK 20(21Q22.3) WILD-TYPE 22 12  3
D26V5, multiclass
    clus
vv   DEL PEAK 20(21Q22.3) MUTATED DEL PEAK 20(21Q22.3) WILD-TYPE
  N0                            5                             22
  N1                            4                             12
  N2                            1                              3
                                vv
clus                             M0 M1 MX
  DEL PEAK 20(21Q22.3) MUTATED   10  3 14
  DEL PEAK 20(21Q22.3) WILD-TYPE 52  3 68
D26V6, multiclass
    clus
vv   DEL PEAK 20(21Q22.3) MUTATED DEL PEAK 20(21Q22.3) WILD-TYPE
  M0                           10                             52
  M1                            3                              3
  MX                           14                             68
D26V7, binary
                                cls
clus                              0  1
  DEL PEAK 20(21Q22.3) MUTATED   13 18
  DEL PEAK 20(21Q22.3) WILD-TYPE 36 96
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(21Q22.3) MUTATED     13   18
  DEL PEAK 20(21Q22.3) WILD-TYPE   36   96
        clus
vv       DEL PEAK 20(21Q22.3) MUTATED DEL PEAK 20(21Q22.3) WILD-TYPE
  FEMALE                           13                             36
  MALE                             18                             96
D26V8, continuous
D26V9, continuous
D26V10, continuous
[1] "Remove cluster labels:"       "DEL PEAK 20(21Q22.3) MUTATED"
clus
  DEL PEAK 20(21Q22.3) MUTATED DEL PEAK 20(21Q22.3) WILD-TYPE 
                             2                              4 
                    TCGA-AL-3472                     TCGA-B9-A69E 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 
                    TCGA-GL-7773                     TCGA-Q2-A5QZ 
"DEL PEAK 20(21Q22.3) WILD-TYPE" "DEL PEAK 20(21Q22.3) WILD-TYPE" 

Clustering(27) Variable = DEL PEAK 21(XP11.22) MUTATION ANALYSIS
D27V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 21(XP11.22) MUTATED    12   5
  DEL PEAK 21(XP11.22) WILD-TYPE 121  12
  DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE 
                            17                            133 
  DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE 
                             5                             12 
$`DEL PEAK 21(XP11.22) MUTATED`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-A5Y1 TCGA-B1-7332 TCGA-B3-3926 TCGA-B9-4116 
       18.21         0.69         2.86         7.33        10.09        20.61 
TCGA-B9-A44B TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5879 TCGA-BQ-5882 TCGA-DZ-6131 
        2.10        19.27         8.88        22.92        21.63        79.86 
TCGA-F9-A4JJ TCGA-G7-6793 TCGA-G7-7501 TCGA-J7-8537 TCGA-Q2-A5QZ 
        3.19        11.05        14.66         0.13         1.87 

$`DEL PEAK 21(XP11.22) WILD-TYPE`
TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 
       16.21         0.10        35.18        19.13         0.89         0.23 
TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 TCGA-A4-8515 
        1.61         0.07         4.60         0.03         0.07         0.69 
TCGA-A4-8516 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A5XZ 
        0.76         0.03         0.10         0.30         0.03         0.07 
TCGA-A4-A5Y0 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 
        3.88         0.13         9.63        58.45        53.79        13.55 
TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-4103 
       30.35        25.08        44.61        19.56        33.83        30.58 
TCGA-B3-4104 TCGA-B3-8121 TCGA-B3-A6W5 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 
       34.49        12.46         2.79        50.50        28.18        26.40 
TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A5W7 
        0.46         1.15        15.12        43.99        22.06         9.14 
TCGA-B9-A5W8 TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5878 TCGA-BQ-5880 
        6.81         0.16         3.35        86.76        63.72        43.20 
TCGA-BQ-5881 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 
       47.80        40.83        26.04        30.28        26.04        25.35 
TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 
       13.25        10.88         7.66         0.95        11.97         7.92 
TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 
        2.76       123.62        48.26        96.92        93.34        44.84 
TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 
       61.28        50.40        49.84        26.27        20.12        11.28 
TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 
        7.63         7.04         7.17         3.81        11.61        13.61 
TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 
      129.86        35.93        37.55        24.46        13.78         3.75 
TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 
       14.63         3.02        28.80        80.88        51.19        61.02 
TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A7VF TCGA-G7-6789 
       54.90        34.19        19.00        24.89         0.23         4.01 
TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7502 
       51.78        48.62        39.25        34.82        25.15        25.84 
TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 TCGA-GL-7966 TCGA-GL-8500 TCGA-GL-A4EM 
        9.17       194.79        12.92         3.68         7.76         1.05 
TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U TCGA-IA-A40X TCGA-IA-A40Y TCGA-IZ-8195 
        5.85         2.99        16.80        14.14         2.04        22.26 
TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-KV-A6GD TCGA-KV-A6GE TCGA-KV-A74V 
       21.34         4.80         0.07         5.26        16.64         5.29 
TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 TCGA-MH-A562 TCGA-O9-A75Z 
       13.08        12.85        17.85        14.40         9.60         4.87 
TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EA TCGA-P4-A5EB TCGA-P4-A5ED TCGA-PJ-A5Z8 
       99.78        87.22         6.61        84.95        92.58         3.72 
TCGA-PJ-A5Z9 
        5.72 

  DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE 
                          0.13                           0.03 
  DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE 
                         79.86                         194.79 
  DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE 
                         10.09                          14.40 
[1] "0.1 - 79.9 (10.1)"  "0.0 - 194.8 (14.4)"
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 21(XP11.22) MUTATED"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
  "DEL PEAK 21(XP11.22) MUTATED" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
  "DEL PEAK 21(XP11.22) MUTATED" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 21(XP11.22) MUTATED" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
  "DEL PEAK 21(XP11.22) MUTATED" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
  "DEL PEAK 21(XP11.22) MUTATED" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 21(XP11.22) MUTATED"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
  "DEL PEAK 21(XP11.22) MUTATED" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
  "DEL PEAK 21(XP11.22) MUTATED" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 21(XP11.22) MUTATED" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
  "DEL PEAK 21(XP11.22) MUTATED" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
  "DEL PEAK 21(XP11.22) MUTATED" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 21(XP11.22) MUTATED"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-A4-7997 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-8098                     TCGA-A4-8310 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-8311                     TCGA-A4-8515 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-8516                     TCGA-A4-8517 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-8518                     TCGA-A4-8630 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-A48D                     TCGA-A4-A5XZ 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-A4-A5Y0                     TCGA-A4-A5Y1 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-A4-A6HP                     TCGA-AL-3466 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B3-8121                     TCGA-B3-A6W5 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-B9-A44B 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-B9-A5W7                     TCGA-B9-A5W8 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-B9-A5W9                     TCGA-B9-A69E 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5875                     TCGA-BQ-5876 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-BQ-5877                     TCGA-BQ-5878 
  "DEL PEAK 21(XP11.22) MUTATED" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5879                     TCGA-BQ-5880 
  "DEL PEAK 21(XP11.22) MUTATED" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5881                     TCGA-BQ-5882 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-BQ-5883                     TCGA-BQ-5884 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5885                     TCGA-BQ-5886 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5887                     TCGA-BQ-5888 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5889                     TCGA-BQ-5890 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5891                     TCGA-BQ-5892 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-5893                     TCGA-BQ-5894 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7044                     TCGA-BQ-7045 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7046                     TCGA-BQ-7048 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7049                     TCGA-BQ-7050 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7051                     TCGA-BQ-7053 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7055                     TCGA-BQ-7056 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7058                     TCGA-BQ-7059 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7060                     TCGA-BQ-7061 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-BQ-7062                     TCGA-DW-5560 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DW-5561                     TCGA-DW-7834 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DW-7836                     TCGA-DW-7837 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DW-7838                     TCGA-DW-7839 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DW-7840                     TCGA-DW-7841 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DW-7842                     TCGA-DW-7963 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 21(XP11.22) MUTATED" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-F9-A4JJ                     TCGA-F9-A7VF 
  "DEL PEAK 21(XP11.22) MUTATED" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7501 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
                    TCGA-G7-7502                     TCGA-G7-A4TM 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7773 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-GL-7966                     TCGA-GL-8500 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-GL-A4EM                     TCGA-GL-A59R 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-IA-A40X                     TCGA-IA-A40Y 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-IZ-8195                     TCGA-IZ-8196 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-IZ-A6M8                     TCGA-IZ-A6M9 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-J7-8537                     TCGA-KV-A6GD 
  "DEL PEAK 21(XP11.22) MUTATED" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-KV-A6GE                     TCGA-KV-A74V 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-MH-A55W                     TCGA-MH-A55Z 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-MH-A560                     TCGA-MH-A561 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-MH-A562                     TCGA-O9-A75Z 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-P4-A5E6                     TCGA-P4-A5E7 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-P4-A5EA                     TCGA-P4-A5EB 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-P4-A5ED                     TCGA-PJ-A5Z8 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-PJ-A5Z9                     TCGA-Q2-A5QZ 
"DEL PEAK 21(XP11.22) WILD-TYPE"   "DEL PEAK 21(XP11.22) MUTATED" 
[1] "hr=" "5.7"
D27V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 21(XP11.22) MUTATED         3        1        10        2
  DEL PEAK 21(XP11.22) WILD-TYPE      92       10        27        8
D27V3, multiclass
           clus
vv          DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE
  STAGE I                              3                             92
  STAGE II                             1                             10
  STAGE III                           10                             27
  STAGE IV                             2                              8
                                vv
clus                             T1 T2 T3+T4
  DEL PEAK 21(XP11.22) MUTATED    4  2    12
  DEL PEAK 21(XP11.22) WILD-TYPE 98 15    32
D27V4, multiclass
       clus
vv      DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE
  T1                               4                             98
  T2                               2                             15
  T3+T4                           12                             32
                                vv
clus                             N0 N1 N2
  DEL PEAK 21(XP11.22) MUTATED    2  5  1
  DEL PEAK 21(XP11.22) WILD-TYPE 25 11  3
D27V5, multiclass
    clus
vv   DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE
  N0                            2                             25
  N1                            5                             11
  N2                            1                              3
                                vv
clus                             M0 M1 MX
  DEL PEAK 21(XP11.22) MUTATED    6  1  8
  DEL PEAK 21(XP11.22) WILD-TYPE 56  5 74
D27V6, multiclass
    clus
vv   DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE
  M0                            6                             56
  M1                            1                              5
  MX                            8                             74
D27V7, binary
                                cls
clus                               0   1
  DEL PEAK 21(XP11.22) MUTATED    11   7
  DEL PEAK 21(XP11.22) WILD-TYPE  38 107
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(XP11.22) MUTATED     11    7
  DEL PEAK 21(XP11.22) WILD-TYPE   38  107
        clus
vv       DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE
  FEMALE                           11                             38
  MALE                              7                            107
D27V8, continuous
D27V9, continuous
[1] "Remove cluster labels:"       "DEL PEAK 21(XP11.22) MUTATED"
clus
  DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE 
                             2                              7 
                    TCGA-B9-A69E                     TCGA-GL-7773 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-GL-A59T                     TCGA-IA-A40U 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-P4-A5E7                     TCGA-P4-A5EB 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-PJ-A5Z9 
"DEL PEAK 21(XP11.22) WILD-TYPE" 
D27V10, continuous
[1] "Remove cluster labels:"       "DEL PEAK 21(XP11.22) MUTATED"
clus
  DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE 
                             1                              5 
                    TCGA-AL-3472                     TCGA-B9-A69E 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-GL-7773                     TCGA-IA-A40U 
"DEL PEAK 21(XP11.22) WILD-TYPE" "DEL PEAK 21(XP11.22) WILD-TYPE" 
                    TCGA-PJ-A5Z9 
"DEL PEAK 21(XP11.22) WILD-TYPE" 

Clustering(28) Variable = DEL PEAK 22(XQ28) MUTATION ANALYSIS
D28V1, survival
                             sevent
clus2                           0   1
  DEL PEAK 22(XQ28) MUTATED    11   5
  DEL PEAK 22(XQ28) WILD-TYPE 122  12
  DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE 
                         16                         134 
  DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE 
                          5                          12 
$`DEL PEAK 22(XQ28) MUTATED`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7583 TCGA-A4-A5Y1 TCGA-AL-3466 TCGA-B1-7332 
       18.21         0.69         0.10         2.86         9.63         7.33 
TCGA-B3-3926 TCGA-BQ-5876 TCGA-BQ-5879 TCGA-BQ-5882 TCGA-F9-A4JJ TCGA-G7-6793 
       10.09        19.27        22.92        21.63         3.19        11.05 
TCGA-G7-6797 TCGA-G7-7501 TCGA-J7-8537 TCGA-Q2-A5QZ 
       25.15        14.66         0.13         1.87 

$`DEL PEAK 22(XQ28) WILD-TYPE`
TCGA-A4-7288 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 
       16.21        35.18        19.13         0.89         0.23         1.61 
TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 TCGA-A4-8515 TCGA-A4-8516 
        0.07         4.60         0.03         0.07         0.69         0.76 
TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A5XZ TCGA-A4-A5Y0 
        0.03         0.10         0.30         0.03         0.07         3.88 
TCGA-A4-A6HP TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 
        0.13        58.45        53.79        13.55        30.35        25.08 
TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 
       44.61        19.56        33.83        30.58        34.49        12.46 
TCGA-B3-A6W5 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 
        2.79        50.50        28.18        26.40        20.61         0.46 
TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A44B TCGA-B9-A5W7 
        1.15        15.12        43.99        22.06         2.10         9.14 
TCGA-B9-A5W8 TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5877 TCGA-BQ-5878 
        6.81         0.16         3.35        86.76         8.88        63.72 
TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 
       43.20        47.80        40.83        26.04        30.28        26.04 
TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 
       25.35        13.25        10.88         7.66         0.95        11.97 
TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 
        7.92         2.76       123.62        48.26        96.92        93.34 
TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 
       44.84        61.28        50.40        49.84        26.27        20.12 
TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 
       11.28         7.63         7.04         7.17         3.81        11.61 
TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 
       13.61       129.86        35.93        37.55        24.46        13.78 
TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6132 
        3.75        14.63         3.02        28.80        79.86        80.88 
TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 
       51.19        61.02        54.90        34.19        19.00        24.89 
TCGA-F9-A7VF TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6795 TCGA-G7-6796 
        0.23         4.01        51.78        48.62        39.25        34.82 
TCGA-G7-7502 TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 TCGA-GL-7966 TCGA-GL-8500 
       25.84         9.17       194.79        12.92         3.68         7.76 
TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U TCGA-IA-A40X TCGA-IA-A40Y 
        1.05         5.85         2.99        16.80        14.14         2.04 
TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-KV-A6GD TCGA-KV-A6GE 
       22.26        21.34         4.80         0.07         5.26        16.64 
TCGA-KV-A74V TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 TCGA-MH-A562 
        5.29        13.08        12.85        17.85        14.40         9.60 
TCGA-O9-A75Z TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EA TCGA-P4-A5EB TCGA-P4-A5ED 
        4.87        99.78        87.22         6.61        84.95        92.58 
TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 
        3.72         5.72 

  DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE 
                       0.10                        0.03 
  DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE 
                      25.15                      194.79 
  DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE 
                      9.860                      14.515 
[1] "0.1 - 25.1 (9.9)"   "0.0 - 194.8 (14.5)"
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK 22(XQ28) MUTATED"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-7997 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-8098                  TCGA-A4-8310 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-8311                  TCGA-A4-8515 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-8516                  TCGA-A4-8517 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-8518                  TCGA-A4-8630 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-A48D                  TCGA-A4-A5XZ 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-A5Y0                  TCGA-A4-A5Y1 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-A4-A6HP                  TCGA-AL-3466 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-AL-3467                  TCGA-AL-3468 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-AL-3471                  TCGA-AL-3472 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-AL-3473                  TCGA-AL-7173 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B1-5398                  TCGA-B1-7332 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-B3-3925                  TCGA-B3-3926 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-B3-4103                  TCGA-B3-4104 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B3-8121                  TCGA-B3-A6W5 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-B9-A44B 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-A5W7                  TCGA-B9-A5W8 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-A5W9                  TCGA-B9-A69E 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5875                  TCGA-BQ-5876 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-BQ-5877                  TCGA-BQ-5878 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5879                  TCGA-BQ-5880 
  "DEL PEAK 22(XQ28) MUTATED" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5881                  TCGA-BQ-5882 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-BQ-5883                  TCGA-BQ-5884 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5885                  TCGA-BQ-5886 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5887                  TCGA-BQ-5888 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5889                  TCGA-BQ-5890 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5891                  TCGA-BQ-5892 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5893                  TCGA-BQ-5894 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7044                  TCGA-BQ-7045 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7046                  TCGA-BQ-7048 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7049                  TCGA-BQ-7050 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7051                  TCGA-BQ-7053 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7055                  TCGA-BQ-7056 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7058                  TCGA-BQ-7059 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7060                  TCGA-BQ-7061 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7062                  TCGA-DW-5560 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DW-5561                  TCGA-DW-7834 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DW-7836                  TCGA-DW-7837 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DW-7838                  TCGA-DW-7839 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DW-7840                  TCGA-DW-7841 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DW-7842                  TCGA-DW-7963 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-F9-A4JJ                  TCGA-F9-A7VF 
  "DEL PEAK 22(XQ28) MUTATED" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
  "DEL PEAK 22(XQ28) MUTATED"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-G7-7502                  TCGA-G7-A4TM 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-GL-6846                  TCGA-GL-7773 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-GL-7966                  TCGA-GL-8500 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-GL-A4EM                  TCGA-GL-A59R 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-GL-A59T                  TCGA-IA-A40U 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IA-A40X                  TCGA-IA-A40Y 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IZ-8195                  TCGA-IZ-8196 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IZ-A6M8                  TCGA-IZ-A6M9 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-J7-8537                  TCGA-KV-A6GD 
  "DEL PEAK 22(XQ28) MUTATED" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-KV-A6GE                  TCGA-KV-A74V 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-MH-A55W                  TCGA-MH-A55Z 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-MH-A560                  TCGA-MH-A561 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-MH-A562                  TCGA-O9-A75Z 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-P4-A5E6                  TCGA-P4-A5E7 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-P4-A5EA                  TCGA-P4-A5EB 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-P4-A5ED                  TCGA-PJ-A5Z8 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-PJ-A5Z9                  TCGA-Q2-A5QZ 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK 22(XQ28) MUTATED"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-7997 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-8098                  TCGA-A4-8310 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-8311                  TCGA-A4-8515 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-8516                  TCGA-A4-8517 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-8518                  TCGA-A4-8630 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-A48D                  TCGA-A4-A5XZ 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-A5Y0                  TCGA-A4-A5Y1 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-A4-A6HP                  TCGA-AL-3466 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-AL-3467                  TCGA-AL-3468 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-AL-3471                  TCGA-AL-3472 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-AL-3473                  TCGA-AL-7173 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B1-5398                  TCGA-B1-7332 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-B3-3925                  TCGA-B3-3926 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-B3-4103                  TCGA-B3-4104 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B3-8121                  TCGA-B3-A6W5 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-B9-A44B 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-A5W7                  TCGA-B9-A5W8 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-A5W9                  TCGA-B9-A69E 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5875                  TCGA-BQ-5876 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-BQ-5877                  TCGA-BQ-5878 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5879                  TCGA-BQ-5880 
  "DEL PEAK 22(XQ28) MUTATED" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5881                  TCGA-BQ-5882 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-BQ-5883                  TCGA-BQ-5884 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5885                  TCGA-BQ-5886 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5887                  TCGA-BQ-5888 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5889                  TCGA-BQ-5890 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5891                  TCGA-BQ-5892 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5893                  TCGA-BQ-5894 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7044                  TCGA-BQ-7045 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7046                  TCGA-BQ-7048 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7049                  TCGA-BQ-7050 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7051                  TCGA-BQ-7053 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7055                  TCGA-BQ-7056 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7058                  TCGA-BQ-7059 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7060                  TCGA-BQ-7061 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7062                  TCGA-DW-5560 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DW-5561                  TCGA-DW-7834 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DW-7836                  TCGA-DW-7837 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DW-7838                  TCGA-DW-7839 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DW-7840                  TCGA-DW-7841 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DW-7842                  TCGA-DW-7963 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-F9-A4JJ                  TCGA-F9-A7VF 
  "DEL PEAK 22(XQ28) MUTATED" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
  "DEL PEAK 22(XQ28) MUTATED"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-G7-7502                  TCGA-G7-A4TM 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-GL-6846                  TCGA-GL-7773 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-GL-7966                  TCGA-GL-8500 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-GL-A4EM                  TCGA-GL-A59R 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-GL-A59T                  TCGA-IA-A40U 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IA-A40X                  TCGA-IA-A40Y 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IZ-8195                  TCGA-IZ-8196 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IZ-A6M8                  TCGA-IZ-A6M9 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-J7-8537                  TCGA-KV-A6GD 
  "DEL PEAK 22(XQ28) MUTATED" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-KV-A6GE                  TCGA-KV-A74V 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-MH-A55W                  TCGA-MH-A55Z 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-MH-A560                  TCGA-MH-A561 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-MH-A562                  TCGA-O9-A75Z 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-P4-A5E6                  TCGA-P4-A5E7 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-P4-A5EA                  TCGA-P4-A5EB 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-P4-A5ED                  TCGA-PJ-A5Z8 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-PJ-A5Z9                  TCGA-Q2-A5QZ 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK 22(XQ28) MUTATED"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-A4-7997 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-8098                  TCGA-A4-8310 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-8311                  TCGA-A4-8515 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-8516                  TCGA-A4-8517 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-8518                  TCGA-A4-8630 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-A48D                  TCGA-A4-A5XZ 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-A4-A5Y0                  TCGA-A4-A5Y1 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-A4-A6HP                  TCGA-AL-3466 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-AL-3467                  TCGA-AL-3468 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-AL-3471                  TCGA-AL-3472 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-AL-3473                  TCGA-AL-7173 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B1-5398                  TCGA-B1-7332 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-B3-3925                  TCGA-B3-3926 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-B3-4103                  TCGA-B3-4104 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B3-8121                  TCGA-B3-A6W5 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-B9-A44B 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-A5W7                  TCGA-B9-A5W8 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-B9-A5W9                  TCGA-B9-A69E 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5875                  TCGA-BQ-5876 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-BQ-5877                  TCGA-BQ-5878 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5879                  TCGA-BQ-5880 
  "DEL PEAK 22(XQ28) MUTATED" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5881                  TCGA-BQ-5882 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-BQ-5883                  TCGA-BQ-5884 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5885                  TCGA-BQ-5886 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5887                  TCGA-BQ-5888 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5889                  TCGA-BQ-5890 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5891                  TCGA-BQ-5892 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-5893                  TCGA-BQ-5894 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7044                  TCGA-BQ-7045 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7046                  TCGA-BQ-7048 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7049                  TCGA-BQ-7050 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7051                  TCGA-BQ-7053 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7055                  TCGA-BQ-7056 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7058                  TCGA-BQ-7059 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7060                  TCGA-BQ-7061 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BQ-7062                  TCGA-DW-5560 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DW-5561                  TCGA-DW-7834 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DW-7836                  TCGA-DW-7837 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DW-7838                  TCGA-DW-7839 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DW-7840                  TCGA-DW-7841 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DW-7842                  TCGA-DW-7963 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-F9-A4JJ                  TCGA-F9-A7VF 
  "DEL PEAK 22(XQ28) MUTATED" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7501 
  "DEL PEAK 22(XQ28) MUTATED"   "DEL PEAK 22(XQ28) MUTATED" 
                 TCGA-G7-7502                  TCGA-G7-A4TM 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-GL-6846                  TCGA-GL-7773 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-GL-7966                  TCGA-GL-8500 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-GL-A4EM                  TCGA-GL-A59R 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-GL-A59T                  TCGA-IA-A40U 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IA-A40X                  TCGA-IA-A40Y 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IZ-8195                  TCGA-IZ-8196 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IZ-A6M8                  TCGA-IZ-A6M9 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-J7-8537                  TCGA-KV-A6GD 
  "DEL PEAK 22(XQ28) MUTATED" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-KV-A6GE                  TCGA-KV-A74V 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-MH-A55W                  TCGA-MH-A55Z 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-MH-A560                  TCGA-MH-A561 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-MH-A562                  TCGA-O9-A75Z 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-P4-A5E6                  TCGA-P4-A5E7 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-P4-A5EA                  TCGA-P4-A5EB 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-P4-A5ED                  TCGA-PJ-A5Z8 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-PJ-A5Z9                  TCGA-Q2-A5QZ 
"DEL PEAK 22(XQ28) WILD-TYPE"   "DEL PEAK 22(XQ28) MUTATED" 
[1] "hr=" "9.8"
D28V2, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 22(XQ28) MUTATED         4        1         9        2
  DEL PEAK 22(XQ28) WILD-TYPE      91       10        28        8
D28V3, multiclass
           clus
vv          DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE
  STAGE I                           4                          91
  STAGE II                          1                          10
  STAGE III                         9                          28
  STAGE IV                          2                           8
                             vv
clus                          T1 T2 T3+T4
  DEL PEAK 22(XQ28) MUTATED    6  1    10
  DEL PEAK 22(XQ28) WILD-TYPE 96 16    34
D28V4, multiclass
       clus
vv      DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE
  T1                            6                          96
  T2                            1                          16
  T3+T4                        10                          34
                             vv
clus                          N0 N1 N2
  DEL PEAK 22(XQ28) MUTATED    2  5  1
  DEL PEAK 22(XQ28) WILD-TYPE 25 11  3
D28V5, multiclass
    clus
vv   DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE
  N0                         2                          25
  N1                         5                          11
  N2                         1                           3
                             vv
clus                          M0 M1 MX
  DEL PEAK 22(XQ28) MUTATED    7  1  8
  DEL PEAK 22(XQ28) WILD-TYPE 55  5 74
D28V6, multiclass
    clus
vv   DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE
  M0                         7                          55
  M1                         1                           5
  MX                         8                          74
D28V7, binary
                             cls
clus                            0   1
  DEL PEAK 22(XQ28) MUTATED    10   7
  DEL PEAK 22(XQ28) WILD-TYPE  39 107
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 22(XQ28) MUTATED     10    7
  DEL PEAK 22(XQ28) WILD-TYPE   39  107
        clus
vv       DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE
  FEMALE                        10                          39
  MALE                           7                         107
D28V8, continuous
D28V9, continuous
[1] "Remove cluster labels:"    "DEL PEAK 22(XQ28) MUTATED"
clus
  DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE 
                          1                           8 
                 TCGA-B9-A44B                  TCGA-B9-A69E 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-GL-7773                  TCGA-GL-A59T 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IA-A40U                  TCGA-P4-A5E7 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-P4-A5EB                  TCGA-PJ-A5Z9 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
D28V10, continuous
[1] "Remove cluster labels:"    "DEL PEAK 22(XQ28) MUTATED"
clus
  DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE 
                          1                           5 
                 TCGA-AL-3472                  TCGA-B9-A69E 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-GL-7773                  TCGA-IA-A40U 
"DEL PEAK 22(XQ28) WILD-TYPE" "DEL PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-PJ-A5Z9 
"DEL PEAK 22(XQ28) WILD-TYPE" 
> q(save="no")
