
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRP-TP/8208796/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/KIRP-TP/8142887/KIRP-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=KIRP-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=KIRP-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/KIRP-TP/8142887/KIRP-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRP-TP/8208796/transformed.cor.cli.txt"

nPatients in clinical file=166, in cluster file=168, common to both=155
[1]   7 155
[1] "SKI MUTATION ANALYSIS"
[1] 3
  SKI MUTATED SKI WILD-TYPE 
            6           149 
  SKI MUTATED SKI WILD-TYPE 
            6           149 
[1] "NEFH MUTATION ANALYSIS"
[1] 3
  NEFH MUTATED NEFH WILD-TYPE 
             9            146 
  NEFH MUTATED NEFH WILD-TYPE 
             9            146 
[1] "HNRNPM MUTATION ANALYSIS"
[1] 3
  HNRNPM MUTATED HNRNPM WILD-TYPE 
              11              144 
  HNRNPM MUTATED HNRNPM WILD-TYPE 
              11              144 
[1] "NF2 MUTATION ANALYSIS"
[1] 3
  NF2 MUTATED NF2 WILD-TYPE 
           11           144 
  NF2 MUTATED NF2 WILD-TYPE 
           11           144 
[1] "ZNF598 MUTATION ANALYSIS"
[1] 3
  ZNF598 MUTATED ZNF598 WILD-TYPE 
              12              143 
  ZNF598 MUTATED ZNF598 WILD-TYPE 
              12              143 
[1] "BMS1 MUTATION ANALYSIS"
[1] 3
  BMS1 MUTATED BMS1 WILD-TYPE 
            13            142 
  BMS1 MUTATED BMS1 WILD-TYPE 
            13            142 
[1] "MUC2 MUTATION ANALYSIS"
[1] 3
  MUC2 MUTATED MUC2 WILD-TYPE 
            25            130 
  MUC2 MUTATED MUC2 WILD-TYPE 
            25            130 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "RADIATIONTHERAPY"                      
[15] "KARNOFSKYPERFORMANCESCORE"             
[16] "HISTOLOGICALTYPE"                      
[17] "RADIATIONS.RADIATION.REGIMENINDICATION"
[18] "NUMBERPACKYEARSSMOKED"                 
[19] "YEAROFTOBACCOSMOKINGONSET"             
[20] "GLEASON_SCORE"                         
[21] "PSA_VALUE"                             
[22] "DAYS_TO_PSA"                           
[23] "BATCHNUMBER"                           

Input Data has 23 rows and 155 columns.

[1] "Batch" "23"   
[1] "Last Follow UP"
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7584 TCGA-A4-7585 
         554           21          493            3           NA           NA 
TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7828 TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 
         582           27           NA            7           49            2 
TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 TCGA-A4-8312 TCGA-A4-8515 TCGA-A4-8517 
         140            1            2           NA           21            1 
TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A4ZT TCGA-A4-A57E TCGA-A4-A5DU 
           3            9            1           NA           NA           NA 
TCGA-A4-A5XZ TCGA-A4-A5Y0 TCGA-A4-A5Y1 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 
           2          118           87            4           NA         1778 
TCGA-AL-3468 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 
        1636          923          763         1357          595         1029 
TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 
         307          930         1049          379         1536          857 
TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 
         803          627           14           35          460         1338 
TCGA-B9-7268 TCGA-B9-A44B TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 TCGA-B9-A69E 
         671           64          278          207            5          102 
TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 
        2639          586          270         1938           NA           NA 
TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 
        1454           NA         1242          792          921          792 
TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 
         771          403           NA          233           29          364 
TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 
          NA           84         3760           NA         2948         2839 
TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 
          NA         1864         1533         1516          799          612 
TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 
          NA          232          214          218          116          353 
TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 
         414         3950         1142          744          419          114 
TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 
         445           92          876         2429         2460           NA 
TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A4JJ 
        1856         1670         1040          578          757           97 
TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 
         208         1575         1479           NA         1194         1059 
TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-7502 TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 
         765          446          786          279         5925          393 
TCGA-GL-7966 TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T TCGA-HE-7128 
         112          236           32          178           91           NA 
TCGA-HE-7129 TCGA-HE-7130 TCGA-HE-A5NF TCGA-HE-A5NH TCGA-HE-A5NL TCGA-IA-A40U 
          NA           NA           NA           NA           NA          511 
TCGA-IA-A40X TCGA-IA-A40Y TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 
         430           62          677          649          146            2 
TCGA-J7-6720 TCGA-J7-8537 TCGA-KV-A6GD TCGA-KV-A6GE TCGA-MH-A55W TCGA-MH-A55Z 
          NA            4          160          506          398          391 
TCGA-MH-A560 TCGA-MH-A561 TCGA-MH-A562 TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EA 
         543          438          292         3035         2653           NA 
TCGA-P4-A5EB TCGA-P4-A5ED TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 TCGA-Q2-A5QZ 
        2584         2816          113          174           57 
Variable 1:'AGE':	nDistinctValues=48,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=121,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=15,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 14:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 16:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 17:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 18:'NUMBERPACKYEARSSMOKED':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 21:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 23:'BATCH.NUMBER':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                         "NEOPLASM.DISEASESTAGE"      
[3] "PATHOLOGY.T.STAGE"           "PATHOLOGY.N.STAGE"          
[5] "PATHOLOGY.M.STAGE"           "GENDER"                     
[7] "KARNOFSKY.PERFORMANCE.SCORE" "NUMBERPACKYEARSSMOKED"      
[9] "YEAROFTOBACCOSMOKINGONSET"  
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 155 columns, 1 survival variables, and 9 non-survival variables.
AGE, nv=48, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=4, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
96 16 42  1 
[1] "table(vv)"
vv
   T1    T2 T3+T4 
   96    16    43 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
T1 T2 T3 T4 
96 16 42  1 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


   T1    T2 T3+T4 
   96    16    43 
PATHOLOGY.N.STAGE, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 
26 16  4 
[1] "table(vv)"
vv
N0 N1 N2 
26 16  4 
$ClinVariableName
[1] "PATHOLOGY.N.STAGE"

$Table
vv
N0 N1 N2 
26 16  4 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


N0 N1 N2 
26 16  4 
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=6, binary=FALSE, numeric=TRUE
NUMBERPACKYEARSSMOKED, nv=8, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=6, binary=FALSE, numeric=TRUE

Clustering(1) Variable = SKI MUTATION ANALYSIS
D1V1, survival
               sevent
clus2             0   1
  SKI MUTATED     5   1
  SKI WILD-TYPE 120  16
  SKI MUTATED SKI WILD-TYPE 
            6           136 
  SKI MUTATED SKI WILD-TYPE 
            1            16 
$`SKI MUTATED`
TCGA-A4-7585 TCGA-B9-7268 TCGA-BQ-5884 TCGA-DZ-6132 TCGA-DZ-6134 TCGA-DZ-6135 
       35.18        22.06        26.04        80.88        61.02        54.90 

$`SKI WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7732 TCGA-A4-7734 
       18.21         0.69        16.21         0.10        19.13         0.89 
TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 
        0.23         1.61         0.07         4.60         0.03         0.07 
TCGA-A4-8515 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A5XZ 
        0.69         0.03         0.10         0.30         0.03         0.07 
TCGA-A4-A5Y0 TCGA-A4-A5Y1 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 
        3.88         2.86         0.13         9.63        58.45        53.79 
TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-3926 
       30.35        25.08        44.61        19.56        33.83        10.09 
TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 
       30.58        34.49        12.46        50.50        28.18        26.40 
TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-A44B 
       20.61         0.46         1.15        15.12        43.99         2.10 
TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5876 
        9.14         6.81         0.16         3.35        86.76        19.27 
TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 
        8.88        63.72        22.92        43.20        47.80        21.63 
TCGA-BQ-5883 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 
       40.83        30.28        26.04        25.35        13.25        10.88 
TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 
        7.66         0.95        11.97         7.92         2.76       123.62 
TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 
       48.26        96.92        93.34        44.84        61.28        50.40 
TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 
       49.84        26.27        20.12        11.28         7.63         7.04 
TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7837 
        7.17         3.81        11.61        13.61       129.86        37.55 
TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 
       24.46        13.78         3.75        14.63         3.02        28.80 
TCGA-DZ-6131 TCGA-DZ-6133 TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A4JJ 
       79.86        51.19        34.19        19.00        24.89         3.19 
TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 
        4.01        51.78        48.62        11.05        39.25        34.82 
TCGA-G7-6797 TCGA-G7-7501 TCGA-G7-7502 TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 
       25.15        14.66        25.84         9.17       194.79        12.92 
TCGA-GL-7966 TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U 
        3.68         7.76         1.05         5.85         2.99        16.80 
TCGA-IA-A40X TCGA-IA-A40Y TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 
       14.14         2.04        22.26        21.34         4.80         0.07 
TCGA-J7-8537 TCGA-KV-A6GD TCGA-KV-A6GE TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 
        0.13         5.26        16.64        13.08        12.85        17.85 
TCGA-MH-A561 TCGA-MH-A562 TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EA TCGA-P4-A5EB 
       14.40         9.60        99.78        87.22         6.61        84.95 
TCGA-P4-A5ED TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 TCGA-Q2-A5QZ 
       92.58         3.72         5.72         1.87 

  SKI MUTATED SKI WILD-TYPE 
        22.06          0.03 
  SKI MUTATED SKI WILD-TYPE 
        80.88        194.79 
  SKI MUTATED SKI WILD-TYPE 
        45.04         13.96 
[1] "22.1 - 80.9 (45.0)" "0.0 - 194.8 (14.0)"
   TCGA-A4-7286    TCGA-A4-7287    TCGA-A4-7288    TCGA-A4-7583    TCGA-A4-7585 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE"   "SKI MUTATED" 
   TCGA-A4-7732    TCGA-A4-7734    TCGA-A4-7915    TCGA-A4-7996    TCGA-A4-7997 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-A4-8098    TCGA-A4-8310    TCGA-A4-8311    TCGA-A4-8515    TCGA-A4-8517 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-A4-8518    TCGA-A4-8630    TCGA-A4-A48D    TCGA-A4-A5XZ    TCGA-A4-A5Y0 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-A4-A5Y1    TCGA-A4-A6HP    TCGA-AL-3466    TCGA-AL-3467    TCGA-AL-3468 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-AL-3472    TCGA-AL-3473    TCGA-AL-7173    TCGA-B1-5398    TCGA-B3-3925 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B3-3926    TCGA-B3-4103    TCGA-B3-4104    TCGA-B3-8121    TCGA-B9-4113 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B9-4114    TCGA-B9-4115    TCGA-B9-4116    TCGA-B9-4117    TCGA-B9-4617 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B9-5155    TCGA-B9-5156    TCGA-B9-7268    TCGA-B9-A44B    TCGA-B9-A5W7 
"SKI WILD-TYPE" "SKI WILD-TYPE"   "SKI MUTATED" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B9-A5W8    TCGA-B9-A5W9    TCGA-B9-A69E    TCGA-BQ-5875    TCGA-BQ-5876 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-5877    TCGA-BQ-5878    TCGA-BQ-5879    TCGA-BQ-5880    TCGA-BQ-5881 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-5882    TCGA-BQ-5883    TCGA-BQ-5884    TCGA-BQ-5885    TCGA-BQ-5886 
"SKI WILD-TYPE" "SKI WILD-TYPE"   "SKI MUTATED" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-5887    TCGA-BQ-5888    TCGA-BQ-5889    TCGA-BQ-5890    TCGA-BQ-5891 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-5892    TCGA-BQ-5893    TCGA-BQ-5894    TCGA-BQ-7044    TCGA-BQ-7045 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-7046    TCGA-BQ-7048    TCGA-BQ-7049    TCGA-BQ-7050    TCGA-BQ-7051 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-7053    TCGA-BQ-7055    TCGA-BQ-7056    TCGA-BQ-7058    TCGA-BQ-7059 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-7060    TCGA-BQ-7061    TCGA-BQ-7062    TCGA-DW-5560    TCGA-DW-5561 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-DW-7834    TCGA-DW-7837    TCGA-DW-7838    TCGA-DW-7839    TCGA-DW-7840 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-DW-7841    TCGA-DW-7842    TCGA-DW-7963    TCGA-DZ-6131    TCGA-DZ-6132 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE"   "SKI MUTATED" 
   TCGA-DZ-6133    TCGA-DZ-6134    TCGA-DZ-6135    TCGA-EV-5901    TCGA-EV-5902 
"SKI WILD-TYPE"   "SKI MUTATED"   "SKI MUTATED" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-EV-5903    TCGA-F9-A4JJ    TCGA-G7-6789    TCGA-G7-6790    TCGA-G7-6792 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-G7-6793    TCGA-G7-6795    TCGA-G7-6796    TCGA-G7-6797    TCGA-G7-7501 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-G7-7502    TCGA-G7-A4TM    TCGA-GL-6846    TCGA-GL-7773    TCGA-GL-7966 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-GL-8500    TCGA-GL-A4EM    TCGA-GL-A59R    TCGA-GL-A59T    TCGA-IA-A40U 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-IA-A40X    TCGA-IA-A40Y    TCGA-IZ-8195    TCGA-IZ-8196    TCGA-IZ-A6M8 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-IZ-A6M9    TCGA-J7-8537    TCGA-KV-A6GD    TCGA-KV-A6GE    TCGA-MH-A55W 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-MH-A55Z    TCGA-MH-A560    TCGA-MH-A561    TCGA-MH-A562    TCGA-P4-A5E6 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-P4-A5E7    TCGA-P4-A5EA    TCGA-P4-A5EB    TCGA-P4-A5ED    TCGA-PJ-A5Z8 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-PJ-A5Z9    TCGA-Q2-A5QZ 
"SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-A4-7286    TCGA-A4-7287    TCGA-A4-7288    TCGA-A4-7583    TCGA-A4-7585 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE"   "SKI MUTATED" 
   TCGA-A4-7732    TCGA-A4-7734    TCGA-A4-7915    TCGA-A4-7996    TCGA-A4-7997 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-A4-8098    TCGA-A4-8310    TCGA-A4-8311    TCGA-A4-8515    TCGA-A4-8517 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-A4-8518    TCGA-A4-8630    TCGA-A4-A48D    TCGA-A4-A5XZ    TCGA-A4-A5Y0 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-A4-A5Y1    TCGA-A4-A6HP    TCGA-AL-3466    TCGA-AL-3467    TCGA-AL-3468 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-AL-3472    TCGA-AL-3473    TCGA-AL-7173    TCGA-B1-5398    TCGA-B3-3925 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B3-3926    TCGA-B3-4103    TCGA-B3-4104    TCGA-B3-8121    TCGA-B9-4113 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B9-4114    TCGA-B9-4115    TCGA-B9-4116    TCGA-B9-4117    TCGA-B9-4617 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B9-5155    TCGA-B9-5156    TCGA-B9-7268    TCGA-B9-A44B    TCGA-B9-A5W7 
"SKI WILD-TYPE" "SKI WILD-TYPE"   "SKI MUTATED" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B9-A5W8    TCGA-B9-A5W9    TCGA-B9-A69E    TCGA-BQ-5875    TCGA-BQ-5876 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-5877    TCGA-BQ-5878    TCGA-BQ-5879    TCGA-BQ-5880    TCGA-BQ-5881 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-5882    TCGA-BQ-5883    TCGA-BQ-5884    TCGA-BQ-5885    TCGA-BQ-5886 
"SKI WILD-TYPE" "SKI WILD-TYPE"   "SKI MUTATED" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-5887    TCGA-BQ-5888    TCGA-BQ-5889    TCGA-BQ-5890    TCGA-BQ-5891 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-5892    TCGA-BQ-5893    TCGA-BQ-5894    TCGA-BQ-7044    TCGA-BQ-7045 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-7046    TCGA-BQ-7048    TCGA-BQ-7049    TCGA-BQ-7050    TCGA-BQ-7051 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-7053    TCGA-BQ-7055    TCGA-BQ-7056    TCGA-BQ-7058    TCGA-BQ-7059 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-7060    TCGA-BQ-7061    TCGA-BQ-7062    TCGA-DW-5560    TCGA-DW-5561 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-DW-7834    TCGA-DW-7837    TCGA-DW-7838    TCGA-DW-7839    TCGA-DW-7840 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-DW-7841    TCGA-DW-7842    TCGA-DW-7963    TCGA-DZ-6131    TCGA-DZ-6132 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE"   "SKI MUTATED" 
   TCGA-DZ-6133    TCGA-DZ-6134    TCGA-DZ-6135    TCGA-EV-5901    TCGA-EV-5902 
"SKI WILD-TYPE"   "SKI MUTATED"   "SKI MUTATED" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-EV-5903    TCGA-F9-A4JJ    TCGA-G7-6789    TCGA-G7-6790    TCGA-G7-6792 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-G7-6793    TCGA-G7-6795    TCGA-G7-6796    TCGA-G7-6797    TCGA-G7-7501 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-G7-7502    TCGA-G7-A4TM    TCGA-GL-6846    TCGA-GL-7773    TCGA-GL-7966 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-GL-8500    TCGA-GL-A4EM    TCGA-GL-A59R    TCGA-GL-A59T    TCGA-IA-A40U 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-IA-A40X    TCGA-IA-A40Y    TCGA-IZ-8195    TCGA-IZ-8196    TCGA-IZ-A6M8 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-IZ-A6M9    TCGA-J7-8537    TCGA-KV-A6GD    TCGA-KV-A6GE    TCGA-MH-A55W 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-MH-A55Z    TCGA-MH-A560    TCGA-MH-A561    TCGA-MH-A562    TCGA-P4-A5E6 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-P4-A5E7    TCGA-P4-A5EA    TCGA-P4-A5EB    TCGA-P4-A5ED    TCGA-PJ-A5Z8 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-PJ-A5Z9    TCGA-Q2-A5QZ 
"SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-A4-7286    TCGA-A4-7287    TCGA-A4-7288    TCGA-A4-7583    TCGA-A4-7585 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE"   "SKI MUTATED" 
   TCGA-A4-7732    TCGA-A4-7734    TCGA-A4-7915    TCGA-A4-7996    TCGA-A4-7997 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-A4-8098    TCGA-A4-8310    TCGA-A4-8311    TCGA-A4-8515    TCGA-A4-8517 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-A4-8518    TCGA-A4-8630    TCGA-A4-A48D    TCGA-A4-A5XZ    TCGA-A4-A5Y0 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-A4-A5Y1    TCGA-A4-A6HP    TCGA-AL-3466    TCGA-AL-3467    TCGA-AL-3468 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-AL-3472    TCGA-AL-3473    TCGA-AL-7173    TCGA-B1-5398    TCGA-B3-3925 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B3-3926    TCGA-B3-4103    TCGA-B3-4104    TCGA-B3-8121    TCGA-B9-4113 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B9-4114    TCGA-B9-4115    TCGA-B9-4116    TCGA-B9-4117    TCGA-B9-4617 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B9-5155    TCGA-B9-5156    TCGA-B9-7268    TCGA-B9-A44B    TCGA-B9-A5W7 
"SKI WILD-TYPE" "SKI WILD-TYPE"   "SKI MUTATED" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B9-A5W8    TCGA-B9-A5W9    TCGA-B9-A69E    TCGA-BQ-5875    TCGA-BQ-5876 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-5877    TCGA-BQ-5878    TCGA-BQ-5879    TCGA-BQ-5880    TCGA-BQ-5881 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-5882    TCGA-BQ-5883    TCGA-BQ-5884    TCGA-BQ-5885    TCGA-BQ-5886 
"SKI WILD-TYPE" "SKI WILD-TYPE"   "SKI MUTATED" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-5887    TCGA-BQ-5888    TCGA-BQ-5889    TCGA-BQ-5890    TCGA-BQ-5891 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-5892    TCGA-BQ-5893    TCGA-BQ-5894    TCGA-BQ-7044    TCGA-BQ-7045 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-7046    TCGA-BQ-7048    TCGA-BQ-7049    TCGA-BQ-7050    TCGA-BQ-7051 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-7053    TCGA-BQ-7055    TCGA-BQ-7056    TCGA-BQ-7058    TCGA-BQ-7059 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-7060    TCGA-BQ-7061    TCGA-BQ-7062    TCGA-DW-5560    TCGA-DW-5561 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-DW-7834    TCGA-DW-7837    TCGA-DW-7838    TCGA-DW-7839    TCGA-DW-7840 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-DW-7841    TCGA-DW-7842    TCGA-DW-7963    TCGA-DZ-6131    TCGA-DZ-6132 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE"   "SKI MUTATED" 
   TCGA-DZ-6133    TCGA-DZ-6134    TCGA-DZ-6135    TCGA-EV-5901    TCGA-EV-5902 
"SKI WILD-TYPE"   "SKI MUTATED"   "SKI MUTATED" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-EV-5903    TCGA-F9-A4JJ    TCGA-G7-6789    TCGA-G7-6790    TCGA-G7-6792 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-G7-6793    TCGA-G7-6795    TCGA-G7-6796    TCGA-G7-6797    TCGA-G7-7501 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-G7-7502    TCGA-G7-A4TM    TCGA-GL-6846    TCGA-GL-7773    TCGA-GL-7966 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-GL-8500    TCGA-GL-A4EM    TCGA-GL-A59R    TCGA-GL-A59T    TCGA-IA-A40U 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-IA-A40X    TCGA-IA-A40Y    TCGA-IZ-8195    TCGA-IZ-8196    TCGA-IZ-A6M8 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-IZ-A6M9    TCGA-J7-8537    TCGA-KV-A6GD    TCGA-KV-A6GE    TCGA-MH-A55W 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-MH-A55Z    TCGA-MH-A560    TCGA-MH-A561    TCGA-MH-A562    TCGA-P4-A5E6 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-P4-A5E7    TCGA-P4-A5EA    TCGA-P4-A5EB    TCGA-P4-A5ED    TCGA-PJ-A5Z8 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-PJ-A5Z9    TCGA-Q2-A5QZ 
"SKI WILD-TYPE" "SKI WILD-TYPE" 
[1] "hr=" "1.6"
D1V2, continuous
               vv
clus            STAGE I STAGE II STAGE III STAGE IV
  SKI MUTATED         4        1         1        0
  SKI WILD-TYPE      85        9        35       10
D1V3, multiclass
           clus
vv          SKI MUTATED SKI WILD-TYPE
  STAGE I             4            85
  STAGE II            1             9
  STAGE III           1            35
  STAGE IV            0            10
               vv
clus            T1 T2 T3+T4
  SKI MUTATED    4  1     1
  SKI WILD-TYPE 92 15    42
D1V4, multiclass
       clus
vv      SKI MUTATED SKI WILD-TYPE
  T1              4            92
  T2              1            15
  T3+T4           1            42
               vv
clus            N0 N1 N2
  SKI MUTATED    2  0  0
  SKI WILD-TYPE 24 16  4
D1V5, multiclass
[1] "Remove cluster labels:" "SKI MUTATED"           
clus
  SKI MUTATED SKI WILD-TYPE 
            2            44 
   TCGA-A4-7583    TCGA-A4-7915    TCGA-A4-A57E    TCGA-A4-A5Y1    TCGA-AL-3466 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-AL-3472    TCGA-AL-3473    TCGA-AL-7173    TCGA-B1-5398    TCGA-BQ-5877 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-5878    TCGA-BQ-5879    TCGA-BQ-5880    TCGA-BQ-5882    TCGA-BQ-5885 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-5887    TCGA-BQ-5888    TCGA-BQ-5889    TCGA-BQ-5890    TCGA-BQ-5891 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-5892    TCGA-BQ-5893    TCGA-BQ-5894    TCGA-BQ-7045    TCGA-BQ-7048 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BQ-7050    TCGA-BQ-7051    TCGA-BQ-7056    TCGA-BQ-7058    TCGA-DW-7963 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-DZ-6131    TCGA-G7-6789    TCGA-G7-6793    TCGA-G7-6795    TCGA-G7-7501 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-GL-6846    TCGA-GL-7966    TCGA-GL-A59R    TCGA-IA-A40U    TCGA-IA-A40Y 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-J7-6720    TCGA-J7-8537    TCGA-P4-A5E6    TCGA-P4-A5EA 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
               vv
clus            M0 M1 MX
  SKI MUTATED    3  0  3
  SKI WILD-TYPE 56  6 74
D1V6, multiclass
    clus
vv   SKI MUTATED SKI WILD-TYPE
  M0           3            56
  M1           0             6
  MX           3            74
D1V7, binary
               cls
clus              0   1
  SKI MUTATED     1   5
  SKI WILD-TYPE  46 103
[1] "tbl2"
               cls
clus            [,1] [,2]
  SKI MUTATED      1    5
  SKI WILD-TYPE   46  103
        clus
vv       SKI MUTATED SKI WILD-TYPE
  FEMALE           1            46
  MALE             5           103
D1V8, continuous
D1V9, continuous
D1V10, continuous

Clustering(2) Variable = NEFH MUTATION ANALYSIS
D2V1, survival
                sevent
clus2              0   1
  NEFH MUTATED     7   0
  NEFH WILD-TYPE 118  17
  NEFH MUTATED NEFH WILD-TYPE 
             7            135 
  NEFH MUTATED NEFH WILD-TYPE 
             0             17 
$`NEFH MUTATED`
TCGA-B9-4117 TCGA-B9-A5W8 TCGA-GL-A59T TCGA-IA-A40X TCGA-MH-A55Z TCGA-MH-A560 
        0.46         6.81         2.99        14.14        12.85        17.85 
TCGA-P4-A5EB 
       84.95 

$`NEFH WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 
       18.21         0.69        16.21         0.10        35.18        19.13 
TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 
        0.89         0.23         1.61         0.07         4.60         0.03 
TCGA-A4-8311 TCGA-A4-8515 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D 
        0.07         0.69         0.03         0.10         0.30         0.03 
TCGA-A4-A5XZ TCGA-A4-A5Y0 TCGA-A4-A5Y1 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 
        0.07         3.88         2.86         0.13         9.63        58.45 
TCGA-AL-3468 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 
       53.79        30.35        25.08        44.61        19.56        33.83 
TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 
       10.09        30.58        34.49        12.46        50.50        28.18 
TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 
       26.40        20.61         1.15        15.12        43.99        22.06 
TCGA-B9-A44B TCGA-B9-A5W7 TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5876 
        2.10         9.14         0.16         3.35        86.76        19.27 
TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 
        8.88        63.72        22.92        43.20        47.80        21.63 
TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 
       40.83        26.04        30.28        26.04        25.35        13.25 
TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 
       10.88         7.66         0.95        11.97         7.92         2.76 
TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 
      123.62        48.26        96.92        93.34        44.84        61.28 
TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 
       50.40        49.84        26.27        20.12        11.28         7.63 
TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 
        7.04         7.17         3.81        11.61        13.61       129.86 
TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 
       37.55        24.46        13.78         3.75        14.63         3.02 
TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 
       28.80        79.86        80.88        51.19        61.02        54.90 
TCGA-EV-5901 TCGA-EV-5902 TCGA-EV-5903 TCGA-F9-A4JJ TCGA-G7-6789 TCGA-G7-6790 
       34.19        19.00        24.89         3.19         4.01        51.78 
TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7501 
       48.62        11.05        39.25        34.82        25.15        14.66 
TCGA-G7-7502 TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 TCGA-GL-7966 TCGA-GL-8500 
       25.84         9.17       194.79        12.92         3.68         7.76 
TCGA-GL-A4EM TCGA-GL-A59R TCGA-IA-A40U TCGA-IA-A40Y TCGA-IZ-8195 TCGA-IZ-8196 
        1.05         5.85        16.80         2.04        22.26        21.34 
TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-J7-8537 TCGA-KV-A6GD TCGA-KV-A6GE TCGA-MH-A55W 
        4.80         0.07         0.13         5.26        16.64        13.08 
TCGA-MH-A561 TCGA-MH-A562 TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EA TCGA-P4-A5ED 
       14.40         9.60        99.78        87.22         6.61        92.58 
TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 TCGA-Q2-A5QZ 
        3.72         5.72         1.87 

  NEFH MUTATED NEFH WILD-TYPE 
          0.46           0.03 
  NEFH MUTATED NEFH WILD-TYPE 
         84.95         194.79 
  NEFH MUTATED NEFH WILD-TYPE 
         12.85          15.12 
[1] "0.5 - 85.0 (12.8)"  "0.0 - 194.8 (15.1)"
    TCGA-A4-7286     TCGA-A4-7287     TCGA-A4-7288     TCGA-A4-7583 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A4-7585     TCGA-A4-7732     TCGA-A4-7734     TCGA-A4-7915 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A4-7996     TCGA-A4-7997     TCGA-A4-8098     TCGA-A4-8310 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A4-8311     TCGA-A4-8515     TCGA-A4-8517     TCGA-A4-8518 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A4-8630     TCGA-A4-A48D     TCGA-A4-A5XZ     TCGA-A4-A5Y0 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A4-A5Y1     TCGA-A4-A6HP     TCGA-AL-3466     TCGA-AL-3467 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AL-3468     TCGA-AL-3472     TCGA-AL-3473     TCGA-AL-7173 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B1-5398     TCGA-B3-3925     TCGA-B3-3926     TCGA-B3-4103 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B3-4104     TCGA-B3-8121     TCGA-B9-4113     TCGA-B9-4114 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B9-4115     TCGA-B9-4116     TCGA-B9-4117     TCGA-B9-4617 
"NEFH WILD-TYPE" "NEFH WILD-TYPE"   "NEFH MUTATED" "NEFH WILD-TYPE" 
    TCGA-B9-5155     TCGA-B9-5156     TCGA-B9-7268     TCGA-B9-A44B 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B9-A5W7     TCGA-B9-A5W8     TCGA-B9-A5W9     TCGA-B9-A69E 
"NEFH WILD-TYPE"   "NEFH MUTATED" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-5875     TCGA-BQ-5876     TCGA-BQ-5877     TCGA-BQ-5878 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5881     TCGA-BQ-5882 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-5883     TCGA-BQ-5884     TCGA-BQ-5885     TCGA-BQ-5886 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-7044     TCGA-BQ-7045     TCGA-BQ-7046     TCGA-BQ-7048 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-7049     TCGA-BQ-7050     TCGA-BQ-7051     TCGA-BQ-7053 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-7055     TCGA-BQ-7056     TCGA-BQ-7058     TCGA-BQ-7059 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-7060     TCGA-BQ-7061     TCGA-BQ-7062     TCGA-DW-5560 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DW-5561     TCGA-DW-7834     TCGA-DW-7837     TCGA-DW-7838 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7841     TCGA-DW-7842 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DW-7963     TCGA-DZ-6131     TCGA-DZ-6132     TCGA-DZ-6133 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DZ-6134     TCGA-DZ-6135     TCGA-EV-5901     TCGA-EV-5902 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-EV-5903     TCGA-F9-A4JJ     TCGA-G7-6789     TCGA-G7-6790 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-G7-6792     TCGA-G7-6793     TCGA-G7-6795     TCGA-G7-6796 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-G7-6797     TCGA-G7-7501     TCGA-G7-7502     TCGA-G7-A4TM 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-GL-6846     TCGA-GL-7773     TCGA-GL-7966     TCGA-GL-8500 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-GL-A4EM     TCGA-GL-A59R     TCGA-GL-A59T     TCGA-IA-A40U 
"NEFH WILD-TYPE" "NEFH WILD-TYPE"   "NEFH MUTATED" "NEFH WILD-TYPE" 
    TCGA-IA-A40X     TCGA-IA-A40Y     TCGA-IZ-8195     TCGA-IZ-8196 
  "NEFH MUTATED" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-IZ-A6M8     TCGA-IZ-A6M9     TCGA-J7-8537     TCGA-KV-A6GD 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-KV-A6GE     TCGA-MH-A55W     TCGA-MH-A55Z     TCGA-MH-A560 
"NEFH WILD-TYPE" "NEFH WILD-TYPE"   "NEFH MUTATED"   "NEFH MUTATED" 
    TCGA-MH-A561     TCGA-MH-A562     TCGA-P4-A5E6     TCGA-P4-A5E7 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-P4-A5EA     TCGA-P4-A5EB     TCGA-P4-A5ED     TCGA-PJ-A5Z8 
"NEFH WILD-TYPE"   "NEFH MUTATED" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-PJ-A5Z9     TCGA-Q2-A5QZ 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A4-7286     TCGA-A4-7287     TCGA-A4-7288     TCGA-A4-7583 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A4-7585     TCGA-A4-7732     TCGA-A4-7734     TCGA-A4-7915 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A4-7996     TCGA-A4-7997     TCGA-A4-8098     TCGA-A4-8310 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A4-8311     TCGA-A4-8515     TCGA-A4-8517     TCGA-A4-8518 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A4-8630     TCGA-A4-A48D     TCGA-A4-A5XZ     TCGA-A4-A5Y0 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A4-A5Y1     TCGA-A4-A6HP     TCGA-AL-3466     TCGA-AL-3467 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AL-3468     TCGA-AL-3472     TCGA-AL-3473     TCGA-AL-7173 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B1-5398     TCGA-B3-3925     TCGA-B3-3926     TCGA-B3-4103 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B3-4104     TCGA-B3-8121     TCGA-B9-4113     TCGA-B9-4114 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B9-4115     TCGA-B9-4116     TCGA-B9-4117     TCGA-B9-4617 
"NEFH WILD-TYPE" "NEFH WILD-TYPE"   "NEFH MUTATED" "NEFH WILD-TYPE" 
    TCGA-B9-5155     TCGA-B9-5156     TCGA-B9-7268     TCGA-B9-A44B 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B9-A5W7     TCGA-B9-A5W8     TCGA-B9-A5W9     TCGA-B9-A69E 
"NEFH WILD-TYPE"   "NEFH MUTATED" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-5875     TCGA-BQ-5876     TCGA-BQ-5877     TCGA-BQ-5878 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5881     TCGA-BQ-5882 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-5883     TCGA-BQ-5884     TCGA-BQ-5885     TCGA-BQ-5886 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-7044     TCGA-BQ-7045     TCGA-BQ-7046     TCGA-BQ-7048 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-7049     TCGA-BQ-7050     TCGA-BQ-7051     TCGA-BQ-7053 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-7055     TCGA-BQ-7056     TCGA-BQ-7058     TCGA-BQ-7059 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-7060     TCGA-BQ-7061     TCGA-BQ-7062     TCGA-DW-5560 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DW-5561     TCGA-DW-7834     TCGA-DW-7837     TCGA-DW-7838 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7841     TCGA-DW-7842 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DW-7963     TCGA-DZ-6131     TCGA-DZ-6132     TCGA-DZ-6133 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DZ-6134     TCGA-DZ-6135     TCGA-EV-5901     TCGA-EV-5902 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-EV-5903     TCGA-F9-A4JJ     TCGA-G7-6789     TCGA-G7-6790 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-G7-6792     TCGA-G7-6793     TCGA-G7-6795     TCGA-G7-6796 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-G7-6797     TCGA-G7-7501     TCGA-G7-7502     TCGA-G7-A4TM 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-GL-6846     TCGA-GL-7773     TCGA-GL-7966     TCGA-GL-8500 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-GL-A4EM     TCGA-GL-A59R     TCGA-GL-A59T     TCGA-IA-A40U 
"NEFH WILD-TYPE" "NEFH WILD-TYPE"   "NEFH MUTATED" "NEFH WILD-TYPE" 
    TCGA-IA-A40X     TCGA-IA-A40Y     TCGA-IZ-8195     TCGA-IZ-8196 
  "NEFH MUTATED" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-IZ-A6M8     TCGA-IZ-A6M9     TCGA-J7-8537     TCGA-KV-A6GD 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-KV-A6GE     TCGA-MH-A55W     TCGA-MH-A55Z     TCGA-MH-A560 
"NEFH WILD-TYPE" "NEFH WILD-TYPE"   "NEFH MUTATED"   "NEFH MUTATED" 
    TCGA-MH-A561     TCGA-MH-A562     TCGA-P4-A5E6     TCGA-P4-A5E7 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-P4-A5EA     TCGA-P4-A5EB     TCGA-P4-A5ED     TCGA-PJ-A5Z8 
"NEFH WILD-TYPE"   "NEFH MUTATED" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-PJ-A5Z9     TCGA-Q2-A5QZ 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A4-7286     TCGA-A4-7287     TCGA-A4-7288     TCGA-A4-7583 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A4-7585     TCGA-A4-7732     TCGA-A4-7734     TCGA-A4-7915 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A4-7996     TCGA-A4-7997     TCGA-A4-8098     TCGA-A4-8310 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A4-8311     TCGA-A4-8515     TCGA-A4-8517     TCGA-A4-8518 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A4-8630     TCGA-A4-A48D     TCGA-A4-A5XZ     TCGA-A4-A5Y0 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A4-A5Y1     TCGA-A4-A6HP     TCGA-AL-3466     TCGA-AL-3467 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AL-3468     TCGA-AL-3472     TCGA-AL-3473     TCGA-AL-7173 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B1-5398     TCGA-B3-3925     TCGA-B3-3926     TCGA-B3-4103 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B3-4104     TCGA-B3-8121     TCGA-B9-4113     TCGA-B9-4114 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B9-4115     TCGA-B9-4116     TCGA-B9-4117     TCGA-B9-4617 
"NEFH WILD-TYPE" "NEFH WILD-TYPE"   "NEFH MUTATED" "NEFH WILD-TYPE" 
    TCGA-B9-5155     TCGA-B9-5156     TCGA-B9-7268     TCGA-B9-A44B 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B9-A5W7     TCGA-B9-A5W8     TCGA-B9-A5W9     TCGA-B9-A69E 
"NEFH WILD-TYPE"   "NEFH MUTATED" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-5875     TCGA-BQ-5876     TCGA-BQ-5877     TCGA-BQ-5878 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5881     TCGA-BQ-5882 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-5883     TCGA-BQ-5884     TCGA-BQ-5885     TCGA-BQ-5886 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-7044     TCGA-BQ-7045     TCGA-BQ-7046     TCGA-BQ-7048 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-7049     TCGA-BQ-7050     TCGA-BQ-7051     TCGA-BQ-7053 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-7055     TCGA-BQ-7056     TCGA-BQ-7058     TCGA-BQ-7059 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BQ-7060     TCGA-BQ-7061     TCGA-BQ-7062     TCGA-DW-5560 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DW-5561     TCGA-DW-7834     TCGA-DW-7837     TCGA-DW-7838 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7841     TCGA-DW-7842 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DW-7963     TCGA-DZ-6131     TCGA-DZ-6132     TCGA-DZ-6133 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DZ-6134     TCGA-DZ-6135     TCGA-EV-5901     TCGA-EV-5902 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-EV-5903     TCGA-F9-A4JJ     TCGA-G7-6789     TCGA-G7-6790 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-G7-6792     TCGA-G7-6793     TCGA-G7-6795     TCGA-G7-6796 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-G7-6797     TCGA-G7-7501     TCGA-G7-7502     TCGA-G7-A4TM 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-GL-6846     TCGA-GL-7773     TCGA-GL-7966     TCGA-GL-8500 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-GL-A4EM     TCGA-GL-A59R     TCGA-GL-A59T     TCGA-IA-A40U 
"NEFH WILD-TYPE" "NEFH WILD-TYPE"   "NEFH MUTATED" "NEFH WILD-TYPE" 
    TCGA-IA-A40X     TCGA-IA-A40Y     TCGA-IZ-8195     TCGA-IZ-8196 
  "NEFH MUTATED" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-IZ-A6M8     TCGA-IZ-A6M9     TCGA-J7-8537     TCGA-KV-A6GD 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-KV-A6GE     TCGA-MH-A55W     TCGA-MH-A55Z     TCGA-MH-A560 
"NEFH WILD-TYPE" "NEFH WILD-TYPE"   "NEFH MUTATED"   "NEFH MUTATED" 
    TCGA-MH-A561     TCGA-MH-A562     TCGA-P4-A5E6     TCGA-P4-A5E7 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-P4-A5EA     TCGA-P4-A5EB     TCGA-P4-A5ED     TCGA-PJ-A5Z8 
"NEFH WILD-TYPE"   "NEFH MUTATED" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-PJ-A5Z9     TCGA-Q2-A5QZ 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" 
[1] "hr="     "2.6e+07"
D2V2, continuous
                vv
clus             STAGE I STAGE II STAGE III STAGE IV
  NEFH MUTATED         7        1         0        0
  NEFH WILD-TYPE      82        9        36       10
D2V3, multiclass
           clus
vv          NEFH MUTATED NEFH WILD-TYPE
  STAGE I              7             82
  STAGE II             1              9
  STAGE III            0             36
  STAGE IV             0             10
                vv
clus             T1 T2 T3+T4
  NEFH MUTATED    7  2     0
  NEFH WILD-TYPE 89 14    43
D2V4, multiclass
       clus
vv      NEFH MUTATED NEFH WILD-TYPE
  T1               7             89
  T2               2             14
  T3+T4            0             43
                vv
clus             N0 N1 N2
  NEFH MUTATED    0  0  0
  NEFH WILD-TYPE 26 16  4
D2V5, multiclass
                vv
clus             M0 M1 MX
  NEFH MUTATED    1  0  7
  NEFH WILD-TYPE 58  6 70
D2V6, multiclass
    clus
vv   NEFH MUTATED NEFH WILD-TYPE
  M0            1             58
  M1            0              6
  MX            7             70
D2V7, binary
                cls
clus               0   1
  NEFH MUTATED     3   6
  NEFH WILD-TYPE  44 102
[1] "tbl2"
                cls
clus             [,1] [,2]
  NEFH MUTATED      3    6
  NEFH WILD-TYPE   44  102
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  FEMALE            3             44
  MALE              6            102
D2V8, continuous
[1] "Remove cluster labels:" "NEFH MUTATED"          
clus
  NEFH MUTATED NEFH WILD-TYPE 
             2             36 
    TCGA-A4-7286     TCGA-A4-7828     TCGA-A4-8310     TCGA-A4-8311 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A4-8312     TCGA-A4-8518     TCGA-A4-8630     TCGA-A4-A4ZT 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A4-A57E     TCGA-A4-A5XZ     TCGA-A4-A6HP     TCGA-AL-3466 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DW-5560     TCGA-DW-5561     TCGA-DW-7834     TCGA-DW-7837 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DW-7838     TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7841 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DW-7842     TCGA-DW-7963     TCGA-EV-5901     TCGA-EV-5902 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-EV-5903     TCGA-G7-6790     TCGA-G7-6793     TCGA-G7-6796 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-G7-6797     TCGA-G7-7501     TCGA-G7-7502     TCGA-G7-A4TM 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-IA-A40U     TCGA-IA-A40Y     TCGA-J7-8537     TCGA-Q2-A5QZ 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
D2V9, continuous
[1] "Remove cluster labels:" "NEFH MUTATED"          
clus
  NEFH MUTATED NEFH WILD-TYPE 
             2              7 
    TCGA-B9-A44B     TCGA-B9-A69E     TCGA-GL-7773     TCGA-IA-A40U 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-P4-A5E7     TCGA-PJ-A5Z9     TCGA-Q2-A5QZ 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
D2V10, continuous

Clustering(3) Variable = HNRNPM MUTATION ANALYSIS
D3V1, survival
                  sevent
clus2                0   1
  HNRNPM MUTATED    11   0
  HNRNPM WILD-TYPE 114  17
  HNRNPM MUTATED HNRNPM WILD-TYPE 
              11              131 
  HNRNPM MUTATED HNRNPM WILD-TYPE 
               0               17 
$`HNRNPM MUTATED`
TCGA-B9-5155 TCGA-BQ-5887 TCGA-BQ-7055 TCGA-BQ-7062 TCGA-DW-7841 TCGA-DZ-6132 
       15.12        25.35        26.27         3.81        14.63        80.88 
TCGA-EV-5902 TCGA-G7-7502 TCGA-GL-6846 TCGA-IA-A40X TCGA-PJ-A5Z8 
       19.00        25.84       194.79        14.14         3.72 

$`HNRNPM WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 
       18.21         0.69        16.21         0.10        35.18        19.13 
TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 
        0.89         0.23         1.61         0.07         4.60         0.03 
TCGA-A4-8311 TCGA-A4-8515 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D 
        0.07         0.69         0.03         0.10         0.30         0.03 
TCGA-A4-A5XZ TCGA-A4-A5Y0 TCGA-A4-A5Y1 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 
        0.07         3.88         2.86         0.13         9.63        58.45 
TCGA-AL-3468 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 
       53.79        30.35        25.08        44.61        19.56        33.83 
TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 
       10.09        30.58        34.49        12.46        50.50        28.18 
TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5156 TCGA-B9-7268 
       26.40        20.61         0.46         1.15        43.99        22.06 
TCGA-B9-A44B TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 
        2.10         9.14         6.81         0.16         3.35        86.76 
TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 
       19.27         8.88        63.72        22.92        43.20        47.80 
TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5888 
       21.63        40.83        26.04        30.28        26.04        13.25 
TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 
       10.88         7.66         0.95        11.97         7.92         2.76 
TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 
      123.62        48.26        96.92        93.34        44.84        61.28 
TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 
       50.40        49.84        20.12        11.28         7.63         7.04 
TCGA-BQ-7061 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7837 TCGA-DW-7838 
        7.17        11.61        13.61       129.86        37.55        24.46 
TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6133 
       13.78         3.75         3.02        28.80        79.86        51.19 
TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5903 TCGA-F9-A4JJ TCGA-G7-6789 
       61.02        54.90        34.19        24.89         3.19         4.01 
TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 
       51.78        48.62        11.05        39.25        34.82        25.15 
TCGA-G7-7501 TCGA-G7-A4TM TCGA-GL-7773 TCGA-GL-7966 TCGA-GL-8500 TCGA-GL-A4EM 
       14.66         9.17        12.92         3.68         7.76         1.05 
TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U TCGA-IA-A40Y TCGA-IZ-8195 TCGA-IZ-8196 
        5.85         2.99        16.80         2.04        22.26        21.34 
TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-J7-8537 TCGA-KV-A6GD TCGA-KV-A6GE TCGA-MH-A55W 
        4.80         0.07         0.13         5.26        16.64        13.08 
TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 TCGA-MH-A562 TCGA-P4-A5E6 TCGA-P4-A5E7 
       12.85        17.85        14.40         9.60        99.78        87.22 
TCGA-P4-A5EA TCGA-P4-A5EB TCGA-P4-A5ED TCGA-PJ-A5Z9 TCGA-Q2-A5QZ 
        6.61        84.95        92.58         5.72         1.87 

  HNRNPM MUTATED HNRNPM WILD-TYPE 
            3.72             0.03 
  HNRNPM MUTATED HNRNPM WILD-TYPE 
          194.79           129.86 
  HNRNPM MUTATED HNRNPM WILD-TYPE 
           19.00            13.78 
[1] "3.7 - 194.8 (19.0)" "0.0 - 129.9 (13.8)"
      TCGA-A4-7286       TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7583 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-A4-7585       TCGA-A4-7732       TCGA-A4-7734       TCGA-A4-7915 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-A4-7996       TCGA-A4-7997       TCGA-A4-8098       TCGA-A4-8310 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-A4-8311       TCGA-A4-8515       TCGA-A4-8517       TCGA-A4-8518 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-A4-8630       TCGA-A4-A48D       TCGA-A4-A5XZ       TCGA-A4-A5Y0 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-A4-A5Y1       TCGA-A4-A6HP       TCGA-AL-3466       TCGA-AL-3467 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-AL-3468       TCGA-AL-3472       TCGA-AL-3473       TCGA-AL-7173 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-B1-5398       TCGA-B3-3925       TCGA-B3-3926       TCGA-B3-4103 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B9-4113       TCGA-B9-4114 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4116       TCGA-B9-4117       TCGA-B9-4617 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-B9-5155       TCGA-B9-5156       TCGA-B9-7268       TCGA-B9-A44B 
  "HNRNPM MUTATED" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-B9-A5W7       TCGA-B9-A5W8       TCGA-B9-A5W9       TCGA-B9-A69E 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-5875       TCGA-BQ-5876       TCGA-BQ-5877       TCGA-BQ-5878 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5885       TCGA-BQ-5886 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
  "HNRNPM MUTATED" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058       TCGA-BQ-7059 
  "HNRNPM MUTATED" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062       TCGA-DW-5560 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE"   "HNRNPM MUTATED" "HNRNPM WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7841       TCGA-DW-7842 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE"   "HNRNPM MUTATED" "HNRNPM WILD-TYPE" 
      TCGA-DW-7963       TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6133 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE"   "HNRNPM MUTATED" "HNRNPM WILD-TYPE" 
      TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EV-5901       TCGA-EV-5902 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE"   "HNRNPM MUTATED" 
      TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-G7-6789       TCGA-G7-6790 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-G7-6792       TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-G7-6797       TCGA-G7-7501       TCGA-G7-7502       TCGA-G7-A4TM 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE"   "HNRNPM MUTATED" "HNRNPM WILD-TYPE" 
      TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966       TCGA-GL-8500 
  "HNRNPM MUTATED" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-GL-A4EM       TCGA-GL-A59R       TCGA-GL-A59T       TCGA-IA-A40U 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196 
  "HNRNPM MUTATED" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-IZ-A6M8       TCGA-IZ-A6M9       TCGA-J7-8537       TCGA-KV-A6GD 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-MH-A55W       TCGA-MH-A55Z       TCGA-MH-A560 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-MH-A561       TCGA-MH-A562       TCGA-P4-A5E6       TCGA-P4-A5E7 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-P4-A5EA       TCGA-P4-A5EB       TCGA-P4-A5ED       TCGA-PJ-A5Z8 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE"   "HNRNPM MUTATED" 
      TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-A4-7286       TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7583 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-A4-7585       TCGA-A4-7732       TCGA-A4-7734       TCGA-A4-7915 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-A4-7996       TCGA-A4-7997       TCGA-A4-8098       TCGA-A4-8310 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-A4-8311       TCGA-A4-8515       TCGA-A4-8517       TCGA-A4-8518 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-A4-8630       TCGA-A4-A48D       TCGA-A4-A5XZ       TCGA-A4-A5Y0 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-A4-A5Y1       TCGA-A4-A6HP       TCGA-AL-3466       TCGA-AL-3467 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-AL-3468       TCGA-AL-3472       TCGA-AL-3473       TCGA-AL-7173 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-B1-5398       TCGA-B3-3925       TCGA-B3-3926       TCGA-B3-4103 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B9-4113       TCGA-B9-4114 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4116       TCGA-B9-4117       TCGA-B9-4617 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-B9-5155       TCGA-B9-5156       TCGA-B9-7268       TCGA-B9-A44B 
  "HNRNPM MUTATED" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-B9-A5W7       TCGA-B9-A5W8       TCGA-B9-A5W9       TCGA-B9-A69E 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-5875       TCGA-BQ-5876       TCGA-BQ-5877       TCGA-BQ-5878 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5885       TCGA-BQ-5886 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
  "HNRNPM MUTATED" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058       TCGA-BQ-7059 
  "HNRNPM MUTATED" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062       TCGA-DW-5560 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE"   "HNRNPM MUTATED" "HNRNPM WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7841       TCGA-DW-7842 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE"   "HNRNPM MUTATED" "HNRNPM WILD-TYPE" 
      TCGA-DW-7963       TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6133 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE"   "HNRNPM MUTATED" "HNRNPM WILD-TYPE" 
      TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EV-5901       TCGA-EV-5902 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE"   "HNRNPM MUTATED" 
      TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-G7-6789       TCGA-G7-6790 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-G7-6792       TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-G7-6797       TCGA-G7-7501       TCGA-G7-7502       TCGA-G7-A4TM 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE"   "HNRNPM MUTATED" "HNRNPM WILD-TYPE" 
      TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966       TCGA-GL-8500 
  "HNRNPM MUTATED" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-GL-A4EM       TCGA-GL-A59R       TCGA-GL-A59T       TCGA-IA-A40U 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196 
  "HNRNPM MUTATED" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-IZ-A6M8       TCGA-IZ-A6M9       TCGA-J7-8537       TCGA-KV-A6GD 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-MH-A55W       TCGA-MH-A55Z       TCGA-MH-A560 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-MH-A561       TCGA-MH-A562       TCGA-P4-A5E6       TCGA-P4-A5E7 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-P4-A5EA       TCGA-P4-A5EB       TCGA-P4-A5ED       TCGA-PJ-A5Z8 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE"   "HNRNPM MUTATED" 
      TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-A4-7286       TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7583 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-A4-7585       TCGA-A4-7732       TCGA-A4-7734       TCGA-A4-7915 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-A4-7996       TCGA-A4-7997       TCGA-A4-8098       TCGA-A4-8310 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-A4-8311       TCGA-A4-8515       TCGA-A4-8517       TCGA-A4-8518 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-A4-8630       TCGA-A4-A48D       TCGA-A4-A5XZ       TCGA-A4-A5Y0 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-A4-A5Y1       TCGA-A4-A6HP       TCGA-AL-3466       TCGA-AL-3467 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-AL-3468       TCGA-AL-3472       TCGA-AL-3473       TCGA-AL-7173 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-B1-5398       TCGA-B3-3925       TCGA-B3-3926       TCGA-B3-4103 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B9-4113       TCGA-B9-4114 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4116       TCGA-B9-4117       TCGA-B9-4617 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-B9-5155       TCGA-B9-5156       TCGA-B9-7268       TCGA-B9-A44B 
  "HNRNPM MUTATED" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-B9-A5W7       TCGA-B9-A5W8       TCGA-B9-A5W9       TCGA-B9-A69E 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-5875       TCGA-BQ-5876       TCGA-BQ-5877       TCGA-BQ-5878 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5885       TCGA-BQ-5886 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
  "HNRNPM MUTATED" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058       TCGA-BQ-7059 
  "HNRNPM MUTATED" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062       TCGA-DW-5560 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE"   "HNRNPM MUTATED" "HNRNPM WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7841       TCGA-DW-7842 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE"   "HNRNPM MUTATED" "HNRNPM WILD-TYPE" 
      TCGA-DW-7963       TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6133 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE"   "HNRNPM MUTATED" "HNRNPM WILD-TYPE" 
      TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EV-5901       TCGA-EV-5902 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE"   "HNRNPM MUTATED" 
      TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-G7-6789       TCGA-G7-6790 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-G7-6792       TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-G7-6797       TCGA-G7-7501       TCGA-G7-7502       TCGA-G7-A4TM 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE"   "HNRNPM MUTATED" "HNRNPM WILD-TYPE" 
      TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966       TCGA-GL-8500 
  "HNRNPM MUTATED" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-GL-A4EM       TCGA-GL-A59R       TCGA-GL-A59T       TCGA-IA-A40U 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196 
  "HNRNPM MUTATED" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-IZ-A6M8       TCGA-IZ-A6M9       TCGA-J7-8537       TCGA-KV-A6GD 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-MH-A55W       TCGA-MH-A55Z       TCGA-MH-A560 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-MH-A561       TCGA-MH-A562       TCGA-P4-A5E6       TCGA-P4-A5E7 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-P4-A5EA       TCGA-P4-A5EB       TCGA-P4-A5ED       TCGA-PJ-A5Z8 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE"   "HNRNPM MUTATED" 
      TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
[1] "hr="     "7.7e+07"
D3V2, continuous
                  vv
clus               STAGE I STAGE II STAGE III STAGE IV
  HNRNPM MUTATED         8        0         2        1
  HNRNPM WILD-TYPE      81       10        34        9
D3V3, multiclass
           clus
vv          HNRNPM MUTATED HNRNPM WILD-TYPE
  STAGE I                8               81
  STAGE II               0               10
  STAGE III              2               34
  STAGE IV               1                9
                  vv
clus               T1 T2 T3+T4
  HNRNPM MUTATED    8  0     3
  HNRNPM WILD-TYPE 88 16    40
D3V4, multiclass
       clus
vv      HNRNPM MUTATED HNRNPM WILD-TYPE
  T1                 8               88
  T2                 0               16
  T3+T4              3               40
                  vv
clus               N0 N1 N2
  HNRNPM MUTATED    1  1  0
  HNRNPM WILD-TYPE 25 15  4
D3V5, multiclass
[1] "Remove cluster labels:" "HNRNPM MUTATED"        
clus
  HNRNPM MUTATED HNRNPM WILD-TYPE 
               2               44 
      TCGA-A4-7583       TCGA-A4-7585       TCGA-A4-7915       TCGA-A4-A57E 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-A4-A5Y1       TCGA-AL-3466       TCGA-AL-3472       TCGA-AL-3473 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-AL-7173       TCGA-B1-5398       TCGA-B9-7268       TCGA-BQ-5877 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5882 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-5885       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-7045       TCGA-BQ-7048       TCGA-BQ-7050       TCGA-BQ-7051 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-BQ-7056       TCGA-BQ-7058       TCGA-DW-7963       TCGA-DZ-6131 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-7501 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-GL-7966       TCGA-GL-A59R       TCGA-IA-A40U       TCGA-IA-A40Y 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-P4-A5E6       TCGA-P4-A5EA 
"HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" "HNRNPM WILD-TYPE" 
                  vv
clus               M0 M1 MX
  HNRNPM MUTATED    5  0  5
  HNRNPM WILD-TYPE 54  6 72
D3V6, multiclass
    clus
vv   HNRNPM MUTATED HNRNPM WILD-TYPE
  M0              5               54
  M1              0                6
  MX              5               72
D3V7, binary
                  cls
clus                0  1
  HNRNPM MUTATED    2  9
  HNRNPM WILD-TYPE 45 99
[1] "tbl2"
                  cls
clus               [,1] [,2]
  HNRNPM MUTATED      2    9
  HNRNPM WILD-TYPE   45   99
        clus
vv       HNRNPM MUTATED HNRNPM WILD-TYPE
  FEMALE              2               45
  MALE                9               99
D3V8, continuous
D3V9, continuous
D3V10, continuous

Clustering(4) Variable = NF2 MUTATION ANALYSIS
D4V1, survival
               sevent
clus2             0   1
  NF2 MUTATED     8   3
  NF2 WILD-TYPE 117  14
  NF2 MUTATED NF2 WILD-TYPE 
           11           131 
  NF2 MUTATED NF2 WILD-TYPE 
            3            14 
$`NF2 MUTATED`
TCGA-A4-8098 TCGA-B9-4117 TCGA-BQ-5875 TCGA-BQ-5877 TCGA-BQ-5894 TCGA-BQ-7044 
        4.60         0.46        86.76         8.88         2.76       123.62 
TCGA-DZ-6133 TCGA-EV-5902 TCGA-G7-6797 TCGA-GL-7966 TCGA-P4-A5EA 
       51.19        19.00        25.15         3.68         6.61 

$`NF2 WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 
       18.21         0.69        16.21         0.10        35.18        19.13 
TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8310 TCGA-A4-8311 
        0.89         0.23         1.61         0.07         0.03         0.07 
TCGA-A4-8515 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A5XZ 
        0.69         0.03         0.10         0.30         0.03         0.07 
TCGA-A4-A5Y0 TCGA-A4-A5Y1 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 
        3.88         2.86         0.13         9.63        58.45        53.79 
TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-3926 
       30.35        25.08        44.61        19.56        33.83        10.09 
TCGA-B3-4103 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 
       30.58        34.49        12.46        50.50        28.18        26.40 
TCGA-B9-4116 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A44B 
       20.61         1.15        15.12        43.99        22.06         2.10 
TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5876 TCGA-BQ-5878 
        9.14         6.81         0.16         3.35        19.27        63.72 
TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 
       22.92        43.20        47.80        21.63        40.83        26.04 
TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 
       30.28        26.04        25.35        13.25        10.88         7.66 
TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 
        0.95        11.97         7.92        48.26        96.92        93.34 
TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 
       44.84        61.28        50.40        49.84        26.27        20.12 
TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 
       11.28         7.63         7.04         7.17         3.81        11.61 
TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 
       13.61       129.86        37.55        24.46        13.78         3.75 
TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6134 
       14.63         3.02        28.80        79.86        80.88        61.02 
TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5903 TCGA-F9-A4JJ TCGA-G7-6789 TCGA-G7-6790 
       54.90        34.19        24.89         3.19         4.01        51.78 
TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-7501 TCGA-G7-7502 
       48.62        11.05        39.25        34.82        14.66        25.84 
TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R 
        9.17       194.79        12.92         7.76         1.05         5.85 
TCGA-GL-A59T TCGA-IA-A40U TCGA-IA-A40X TCGA-IA-A40Y TCGA-IZ-8195 TCGA-IZ-8196 
        2.99        16.80        14.14         2.04        22.26        21.34 
TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-J7-8537 TCGA-KV-A6GD TCGA-KV-A6GE TCGA-MH-A55W 
        4.80         0.07         0.13         5.26        16.64        13.08 
TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 TCGA-MH-A562 TCGA-P4-A5E6 TCGA-P4-A5E7 
       12.85        17.85        14.40         9.60        99.78        87.22 
TCGA-P4-A5EB TCGA-P4-A5ED TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 TCGA-Q2-A5QZ 
       84.95        92.58         3.72         5.72         1.87 

  NF2 MUTATED NF2 WILD-TYPE 
         0.46          0.03 
  NF2 MUTATED NF2 WILD-TYPE 
       123.62        194.79 
  NF2 MUTATED NF2 WILD-TYPE 
         8.88         14.66 
[1] "0.5 - 123.6 (8.9)"  "0.0 - 194.8 (14.7)"
   TCGA-A4-7286    TCGA-A4-7287    TCGA-A4-7288    TCGA-A4-7583    TCGA-A4-7585 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A4-7732    TCGA-A4-7734    TCGA-A4-7915    TCGA-A4-7996    TCGA-A4-7997 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A4-8098    TCGA-A4-8310    TCGA-A4-8311    TCGA-A4-8515    TCGA-A4-8517 
  "NF2 MUTATED" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A4-8518    TCGA-A4-8630    TCGA-A4-A48D    TCGA-A4-A5XZ    TCGA-A4-A5Y0 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A4-A5Y1    TCGA-A4-A6HP    TCGA-AL-3466    TCGA-AL-3467    TCGA-AL-3468 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-AL-3472    TCGA-AL-3473    TCGA-AL-7173    TCGA-B1-5398    TCGA-B3-3925 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B3-3926    TCGA-B3-4103    TCGA-B3-4104    TCGA-B3-8121    TCGA-B9-4113 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B9-4114    TCGA-B9-4115    TCGA-B9-4116    TCGA-B9-4117    TCGA-B9-4617 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED" "NF2 WILD-TYPE" 
   TCGA-B9-5155    TCGA-B9-5156    TCGA-B9-7268    TCGA-B9-A44B    TCGA-B9-A5W7 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B9-A5W8    TCGA-B9-A5W9    TCGA-B9-A69E    TCGA-BQ-5875    TCGA-BQ-5876 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED" "NF2 WILD-TYPE" 
   TCGA-BQ-5877    TCGA-BQ-5878    TCGA-BQ-5879    TCGA-BQ-5880    TCGA-BQ-5881 
  "NF2 MUTATED" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-BQ-5882    TCGA-BQ-5883    TCGA-BQ-5884    TCGA-BQ-5885    TCGA-BQ-5886 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-BQ-5887    TCGA-BQ-5888    TCGA-BQ-5889    TCGA-BQ-5890    TCGA-BQ-5891 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-BQ-5892    TCGA-BQ-5893    TCGA-BQ-5894    TCGA-BQ-7044    TCGA-BQ-7045 
"NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED"   "NF2 MUTATED" "NF2 WILD-TYPE" 
   TCGA-BQ-7046    TCGA-BQ-7048    TCGA-BQ-7049    TCGA-BQ-7050    TCGA-BQ-7051 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-BQ-7053    TCGA-BQ-7055    TCGA-BQ-7056    TCGA-BQ-7058    TCGA-BQ-7059 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-BQ-7060    TCGA-BQ-7061    TCGA-BQ-7062    TCGA-DW-5560    TCGA-DW-5561 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-DW-7834    TCGA-DW-7837    TCGA-DW-7838    TCGA-DW-7839    TCGA-DW-7840 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-DW-7841    TCGA-DW-7842    TCGA-DW-7963    TCGA-DZ-6131    TCGA-DZ-6132 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-DZ-6133    TCGA-DZ-6134    TCGA-DZ-6135    TCGA-EV-5901    TCGA-EV-5902 
  "NF2 MUTATED" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED" 
   TCGA-EV-5903    TCGA-F9-A4JJ    TCGA-G7-6789    TCGA-G7-6790    TCGA-G7-6792 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-G7-6793    TCGA-G7-6795    TCGA-G7-6796    TCGA-G7-6797    TCGA-G7-7501 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED" "NF2 WILD-TYPE" 
   TCGA-G7-7502    TCGA-G7-A4TM    TCGA-GL-6846    TCGA-GL-7773    TCGA-GL-7966 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED" 
   TCGA-GL-8500    TCGA-GL-A4EM    TCGA-GL-A59R    TCGA-GL-A59T    TCGA-IA-A40U 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IA-A40X    TCGA-IA-A40Y    TCGA-IZ-8195    TCGA-IZ-8196    TCGA-IZ-A6M8 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IZ-A6M9    TCGA-J7-8537    TCGA-KV-A6GD    TCGA-KV-A6GE    TCGA-MH-A55W 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-MH-A55Z    TCGA-MH-A560    TCGA-MH-A561    TCGA-MH-A562    TCGA-P4-A5E6 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-P4-A5E7    TCGA-P4-A5EA    TCGA-P4-A5EB    TCGA-P4-A5ED    TCGA-PJ-A5Z8 
"NF2 WILD-TYPE"   "NF2 MUTATED" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-PJ-A5Z9    TCGA-Q2-A5QZ 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A4-7286    TCGA-A4-7287    TCGA-A4-7288    TCGA-A4-7583    TCGA-A4-7585 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A4-7732    TCGA-A4-7734    TCGA-A4-7915    TCGA-A4-7996    TCGA-A4-7997 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A4-8098    TCGA-A4-8310    TCGA-A4-8311    TCGA-A4-8515    TCGA-A4-8517 
  "NF2 MUTATED" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A4-8518    TCGA-A4-8630    TCGA-A4-A48D    TCGA-A4-A5XZ    TCGA-A4-A5Y0 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A4-A5Y1    TCGA-A4-A6HP    TCGA-AL-3466    TCGA-AL-3467    TCGA-AL-3468 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-AL-3472    TCGA-AL-3473    TCGA-AL-7173    TCGA-B1-5398    TCGA-B3-3925 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B3-3926    TCGA-B3-4103    TCGA-B3-4104    TCGA-B3-8121    TCGA-B9-4113 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B9-4114    TCGA-B9-4115    TCGA-B9-4116    TCGA-B9-4117    TCGA-B9-4617 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED" "NF2 WILD-TYPE" 
   TCGA-B9-5155    TCGA-B9-5156    TCGA-B9-7268    TCGA-B9-A44B    TCGA-B9-A5W7 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B9-A5W8    TCGA-B9-A5W9    TCGA-B9-A69E    TCGA-BQ-5875    TCGA-BQ-5876 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED" "NF2 WILD-TYPE" 
   TCGA-BQ-5877    TCGA-BQ-5878    TCGA-BQ-5879    TCGA-BQ-5880    TCGA-BQ-5881 
  "NF2 MUTATED" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-BQ-5882    TCGA-BQ-5883    TCGA-BQ-5884    TCGA-BQ-5885    TCGA-BQ-5886 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-BQ-5887    TCGA-BQ-5888    TCGA-BQ-5889    TCGA-BQ-5890    TCGA-BQ-5891 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-BQ-5892    TCGA-BQ-5893    TCGA-BQ-5894    TCGA-BQ-7044    TCGA-BQ-7045 
"NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED"   "NF2 MUTATED" "NF2 WILD-TYPE" 
   TCGA-BQ-7046    TCGA-BQ-7048    TCGA-BQ-7049    TCGA-BQ-7050    TCGA-BQ-7051 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-BQ-7053    TCGA-BQ-7055    TCGA-BQ-7056    TCGA-BQ-7058    TCGA-BQ-7059 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-BQ-7060    TCGA-BQ-7061    TCGA-BQ-7062    TCGA-DW-5560    TCGA-DW-5561 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-DW-7834    TCGA-DW-7837    TCGA-DW-7838    TCGA-DW-7839    TCGA-DW-7840 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-DW-7841    TCGA-DW-7842    TCGA-DW-7963    TCGA-DZ-6131    TCGA-DZ-6132 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-DZ-6133    TCGA-DZ-6134    TCGA-DZ-6135    TCGA-EV-5901    TCGA-EV-5902 
  "NF2 MUTATED" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED" 
   TCGA-EV-5903    TCGA-F9-A4JJ    TCGA-G7-6789    TCGA-G7-6790    TCGA-G7-6792 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-G7-6793    TCGA-G7-6795    TCGA-G7-6796    TCGA-G7-6797    TCGA-G7-7501 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED" "NF2 WILD-TYPE" 
   TCGA-G7-7502    TCGA-G7-A4TM    TCGA-GL-6846    TCGA-GL-7773    TCGA-GL-7966 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED" 
   TCGA-GL-8500    TCGA-GL-A4EM    TCGA-GL-A59R    TCGA-GL-A59T    TCGA-IA-A40U 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IA-A40X    TCGA-IA-A40Y    TCGA-IZ-8195    TCGA-IZ-8196    TCGA-IZ-A6M8 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IZ-A6M9    TCGA-J7-8537    TCGA-KV-A6GD    TCGA-KV-A6GE    TCGA-MH-A55W 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-MH-A55Z    TCGA-MH-A560    TCGA-MH-A561    TCGA-MH-A562    TCGA-P4-A5E6 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-P4-A5E7    TCGA-P4-A5EA    TCGA-P4-A5EB    TCGA-P4-A5ED    TCGA-PJ-A5Z8 
"NF2 WILD-TYPE"   "NF2 MUTATED" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-PJ-A5Z9    TCGA-Q2-A5QZ 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A4-7286    TCGA-A4-7287    TCGA-A4-7288    TCGA-A4-7583    TCGA-A4-7585 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A4-7732    TCGA-A4-7734    TCGA-A4-7915    TCGA-A4-7996    TCGA-A4-7997 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A4-8098    TCGA-A4-8310    TCGA-A4-8311    TCGA-A4-8515    TCGA-A4-8517 
  "NF2 MUTATED" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A4-8518    TCGA-A4-8630    TCGA-A4-A48D    TCGA-A4-A5XZ    TCGA-A4-A5Y0 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A4-A5Y1    TCGA-A4-A6HP    TCGA-AL-3466    TCGA-AL-3467    TCGA-AL-3468 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-AL-3472    TCGA-AL-3473    TCGA-AL-7173    TCGA-B1-5398    TCGA-B3-3925 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B3-3926    TCGA-B3-4103    TCGA-B3-4104    TCGA-B3-8121    TCGA-B9-4113 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B9-4114    TCGA-B9-4115    TCGA-B9-4116    TCGA-B9-4117    TCGA-B9-4617 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED" "NF2 WILD-TYPE" 
   TCGA-B9-5155    TCGA-B9-5156    TCGA-B9-7268    TCGA-B9-A44B    TCGA-B9-A5W7 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B9-A5W8    TCGA-B9-A5W9    TCGA-B9-A69E    TCGA-BQ-5875    TCGA-BQ-5876 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED" "NF2 WILD-TYPE" 
   TCGA-BQ-5877    TCGA-BQ-5878    TCGA-BQ-5879    TCGA-BQ-5880    TCGA-BQ-5881 
  "NF2 MUTATED" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-BQ-5882    TCGA-BQ-5883    TCGA-BQ-5884    TCGA-BQ-5885    TCGA-BQ-5886 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-BQ-5887    TCGA-BQ-5888    TCGA-BQ-5889    TCGA-BQ-5890    TCGA-BQ-5891 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-BQ-5892    TCGA-BQ-5893    TCGA-BQ-5894    TCGA-BQ-7044    TCGA-BQ-7045 
"NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED"   "NF2 MUTATED" "NF2 WILD-TYPE" 
   TCGA-BQ-7046    TCGA-BQ-7048    TCGA-BQ-7049    TCGA-BQ-7050    TCGA-BQ-7051 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-BQ-7053    TCGA-BQ-7055    TCGA-BQ-7056    TCGA-BQ-7058    TCGA-BQ-7059 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-BQ-7060    TCGA-BQ-7061    TCGA-BQ-7062    TCGA-DW-5560    TCGA-DW-5561 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-DW-7834    TCGA-DW-7837    TCGA-DW-7838    TCGA-DW-7839    TCGA-DW-7840 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-DW-7841    TCGA-DW-7842    TCGA-DW-7963    TCGA-DZ-6131    TCGA-DZ-6132 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-DZ-6133    TCGA-DZ-6134    TCGA-DZ-6135    TCGA-EV-5901    TCGA-EV-5902 
  "NF2 MUTATED" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED" 
   TCGA-EV-5903    TCGA-F9-A4JJ    TCGA-G7-6789    TCGA-G7-6790    TCGA-G7-6792 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-G7-6793    TCGA-G7-6795    TCGA-G7-6796    TCGA-G7-6797    TCGA-G7-7501 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED" "NF2 WILD-TYPE" 
   TCGA-G7-7502    TCGA-G7-A4TM    TCGA-GL-6846    TCGA-GL-7773    TCGA-GL-7966 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED" 
   TCGA-GL-8500    TCGA-GL-A4EM    TCGA-GL-A59R    TCGA-GL-A59T    TCGA-IA-A40U 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IA-A40X    TCGA-IA-A40Y    TCGA-IZ-8195    TCGA-IZ-8196    TCGA-IZ-A6M8 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IZ-A6M9    TCGA-J7-8537    TCGA-KV-A6GD    TCGA-KV-A6GE    TCGA-MH-A55W 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-MH-A55Z    TCGA-MH-A560    TCGA-MH-A561    TCGA-MH-A562    TCGA-P4-A5E6 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-P4-A5E7    TCGA-P4-A5EA    TCGA-P4-A5EB    TCGA-P4-A5ED    TCGA-PJ-A5Z8 
"NF2 WILD-TYPE"   "NF2 MUTATED" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-PJ-A5Z9    TCGA-Q2-A5QZ 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" 
[1] "hr=" "2.3"
D4V2, continuous
               vv
clus            STAGE I STAGE II STAGE III STAGE IV
  NF2 MUTATED         3        0         5        2
  NF2 WILD-TYPE      86       10        31        8
D4V3, multiclass
           clus
vv          NF2 MUTATED NF2 WILD-TYPE
  STAGE I             3            86
  STAGE II            0            10
  STAGE III           5            31
  STAGE IV            2             8
               vv
clus            T1 T2 T3+T4
  NF2 MUTATED    4  1     6
  NF2 WILD-TYPE 92 15    37
D4V4, multiclass
       clus
vv      NF2 MUTATED NF2 WILD-TYPE
  T1              4            92
  T2              1            15
  T3+T4           6            37
               vv
clus            N0 N1 N2
  NF2 MUTATED    0  4  0
  NF2 WILD-TYPE 26 12  4
D4V5, multiclass
    clus
vv   NF2 MUTATED NF2 WILD-TYPE
  N0           0            26
  N1           4            12
  N2           0             4
               vv
clus            M0 M1 MX
  NF2 MUTATED    3  2  5
  NF2 WILD-TYPE 56  4 72
D4V6, multiclass
    clus
vv   NF2 MUTATED NF2 WILD-TYPE
  M0           3            56
  M1           2             4
  MX           5            72
D4V7, binary
               cls
clus              0   1
  NF2 MUTATED     5   6
  NF2 WILD-TYPE  42 102
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF2 MUTATED      5    6
  NF2 WILD-TYPE   42  102
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  FEMALE           5            42
  MALE             6           102
D4V8, continuous
[1] "Remove cluster labels:" "NF2 MUTATED"           
clus
  NF2 MUTATED NF2 WILD-TYPE 
            2            36 
   TCGA-A4-7286    TCGA-A4-7828    TCGA-A4-8310    TCGA-A4-8311    TCGA-A4-8312 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A4-8518    TCGA-A4-8630    TCGA-A4-A4ZT    TCGA-A4-A57E    TCGA-A4-A5DU 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A4-A5XZ    TCGA-A4-A6HP    TCGA-AL-3466    TCGA-DW-5560    TCGA-DW-5561 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-DW-7834    TCGA-DW-7837    TCGA-DW-7838    TCGA-DW-7839    TCGA-DW-7840 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-DW-7841    TCGA-DW-7842    TCGA-DW-7963    TCGA-EV-5901    TCGA-EV-5903 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-G7-6790    TCGA-G7-6793    TCGA-G7-6796    TCGA-G7-7501    TCGA-G7-7502 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-G7-A4TM    TCGA-IA-A40U    TCGA-IA-A40X    TCGA-IA-A40Y    TCGA-J7-8537 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-Q2-A5QZ 
"NF2 WILD-TYPE" 
D4V9, continuous
D4V10, continuous

Clustering(5) Variable = ZNF598 MUTATION ANALYSIS
D5V1, survival
                  sevent
clus2                0   1
  ZNF598 MUTATED     8   3
  ZNF598 WILD-TYPE 117  14
  ZNF598 MUTATED ZNF598 WILD-TYPE 
              11              131 
  ZNF598 MUTATED ZNF598 WILD-TYPE 
               3               14 
$`ZNF598 MUTATED`
TCGA-AL-3473 TCGA-B3-8121 TCGA-BQ-5877 TCGA-BQ-5893 TCGA-BQ-7049 TCGA-DW-7834 
       25.08        12.46         8.88         7.92        44.84       129.86 
TCGA-DW-7838 TCGA-DZ-6131 TCGA-EV-5903 TCGA-G7-7501 TCGA-G7-7502 
       24.46        79.86        24.89        14.66        25.84 

$`ZNF598 WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 
       18.21         0.69        16.21         0.10        35.18        19.13 
TCGA-A4-7734 TCGA-A4-7915 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 
        0.89         0.23         1.61         0.07         4.60         0.03 
TCGA-A4-8311 TCGA-A4-8515 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D 
        0.07         0.69         0.03         0.10         0.30         0.03 
TCGA-A4-A5XZ TCGA-A4-A5Y0 TCGA-A4-A5Y1 TCGA-A4-A6HP TCGA-AL-3466 TCGA-AL-3467 
        0.07         3.88         2.86         0.13         9.63        58.45 
TCGA-AL-3468 TCGA-AL-3472 TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-3926 
       53.79        30.35        44.61        19.56        33.83        10.09 
TCGA-B3-4103 TCGA-B3-4104 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 
       30.58        34.49        50.50        28.18        26.40        20.61 
TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A44B 
        0.46         1.15        15.12        43.99        22.06         2.10 
TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5876 
        9.14         6.81         0.16         3.35        86.76        19.27 
TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 
       63.72        22.92        43.20        47.80        21.63        40.83 
TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 
       26.04        30.28        26.04        25.35        13.25        10.88 
TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 
        7.66         0.95        11.97         2.76       123.62        48.26 
TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 
       96.92        93.34        61.28        50.40        49.84        26.27 
TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 TCGA-BQ-7061 TCGA-BQ-7062 
       20.12        11.28         7.63         7.04         7.17         3.81 
TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7837 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 
       11.61        13.61        37.55        13.78         3.75        14.63 
TCGA-DW-7842 TCGA-DW-7963 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 
        3.02        28.80        80.88        51.19        61.02        54.90 
TCGA-EV-5901 TCGA-EV-5902 TCGA-F9-A4JJ TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 
       34.19        19.00         3.19         4.01        51.78        48.62 
TCGA-G7-6793 TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-A4TM TCGA-GL-6846 
       11.05        39.25        34.82        25.15         9.17       194.79 
TCGA-GL-7773 TCGA-GL-7966 TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T 
       12.92         3.68         7.76         1.05         5.85         2.99 
TCGA-IA-A40U TCGA-IA-A40X TCGA-IA-A40Y TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 
       16.80        14.14         2.04        22.26        21.34         4.80 
TCGA-IZ-A6M9 TCGA-J7-8537 TCGA-KV-A6GD TCGA-KV-A6GE TCGA-MH-A55W TCGA-MH-A55Z 
        0.07         0.13         5.26        16.64        13.08        12.85 
TCGA-MH-A560 TCGA-MH-A561 TCGA-MH-A562 TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EA 
       17.85        14.40         9.60        99.78        87.22         6.61 
TCGA-P4-A5EB TCGA-P4-A5ED TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 TCGA-Q2-A5QZ 
       84.95        92.58         3.72         5.72         1.87 

  ZNF598 MUTATED ZNF598 WILD-TYPE 
            7.92             0.03 
  ZNF598 MUTATED ZNF598 WILD-TYPE 
          129.86           194.79 
  ZNF598 MUTATED ZNF598 WILD-TYPE 
           24.89            14.14 
[1] "7.9 - 129.9 (24.9)" "0.0 - 194.8 (14.1)"
      TCGA-A4-7286       TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7583 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A4-7585       TCGA-A4-7732       TCGA-A4-7734       TCGA-A4-7915 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A4-7996       TCGA-A4-7997       TCGA-A4-8098       TCGA-A4-8310 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A4-8311       TCGA-A4-8515       TCGA-A4-8517       TCGA-A4-8518 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A4-8630       TCGA-A4-A48D       TCGA-A4-A5XZ       TCGA-A4-A5Y0 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A4-A5Y1       TCGA-A4-A6HP       TCGA-AL-3466       TCGA-AL-3467 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-AL-3468       TCGA-AL-3472       TCGA-AL-3473       TCGA-AL-7173 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE" 
      TCGA-B1-5398       TCGA-B3-3925       TCGA-B3-3926       TCGA-B3-4103 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B9-4113       TCGA-B9-4114 
"ZNF598 WILD-TYPE"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4116       TCGA-B9-4117       TCGA-B9-4617 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B9-5155       TCGA-B9-5156       TCGA-B9-7268       TCGA-B9-A44B 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B9-A5W7       TCGA-B9-A5W8       TCGA-B9-A5W9       TCGA-B9-A69E 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-5875       TCGA-BQ-5876       TCGA-BQ-5877       TCGA-BQ-5878 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE" 
      TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5885       TCGA-BQ-5886 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053 
  "ZNF598 MUTATED" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058       TCGA-BQ-7059 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062       TCGA-DW-5560 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838 
"ZNF598 WILD-TYPE"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE"   "ZNF598 MUTATED" 
      TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7841       TCGA-DW-7842 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-DW-7963       TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6133 
"ZNF598 WILD-TYPE"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EV-5901       TCGA-EV-5902 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-G7-6789       TCGA-G7-6790 
  "ZNF598 MUTATED" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-G7-6792       TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-G7-6797       TCGA-G7-7501       TCGA-G7-7502       TCGA-G7-A4TM 
"ZNF598 WILD-TYPE"   "ZNF598 MUTATED"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE" 
      TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966       TCGA-GL-8500 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-GL-A4EM       TCGA-GL-A59R       TCGA-GL-A59T       TCGA-IA-A40U 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-IZ-A6M8       TCGA-IZ-A6M9       TCGA-J7-8537       TCGA-KV-A6GD 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-MH-A55W       TCGA-MH-A55Z       TCGA-MH-A560 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-MH-A561       TCGA-MH-A562       TCGA-P4-A5E6       TCGA-P4-A5E7 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-P4-A5EA       TCGA-P4-A5EB       TCGA-P4-A5ED       TCGA-PJ-A5Z8 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A4-7286       TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7583 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A4-7585       TCGA-A4-7732       TCGA-A4-7734       TCGA-A4-7915 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A4-7996       TCGA-A4-7997       TCGA-A4-8098       TCGA-A4-8310 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A4-8311       TCGA-A4-8515       TCGA-A4-8517       TCGA-A4-8518 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A4-8630       TCGA-A4-A48D       TCGA-A4-A5XZ       TCGA-A4-A5Y0 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A4-A5Y1       TCGA-A4-A6HP       TCGA-AL-3466       TCGA-AL-3467 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-AL-3468       TCGA-AL-3472       TCGA-AL-3473       TCGA-AL-7173 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE" 
      TCGA-B1-5398       TCGA-B3-3925       TCGA-B3-3926       TCGA-B3-4103 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B9-4113       TCGA-B9-4114 
"ZNF598 WILD-TYPE"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4116       TCGA-B9-4117       TCGA-B9-4617 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B9-5155       TCGA-B9-5156       TCGA-B9-7268       TCGA-B9-A44B 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B9-A5W7       TCGA-B9-A5W8       TCGA-B9-A5W9       TCGA-B9-A69E 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-5875       TCGA-BQ-5876       TCGA-BQ-5877       TCGA-BQ-5878 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE" 
      TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5885       TCGA-BQ-5886 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053 
  "ZNF598 MUTATED" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058       TCGA-BQ-7059 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062       TCGA-DW-5560 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838 
"ZNF598 WILD-TYPE"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE"   "ZNF598 MUTATED" 
      TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7841       TCGA-DW-7842 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-DW-7963       TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6133 
"ZNF598 WILD-TYPE"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EV-5901       TCGA-EV-5902 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-G7-6789       TCGA-G7-6790 
  "ZNF598 MUTATED" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-G7-6792       TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-G7-6797       TCGA-G7-7501       TCGA-G7-7502       TCGA-G7-A4TM 
"ZNF598 WILD-TYPE"   "ZNF598 MUTATED"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE" 
      TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966       TCGA-GL-8500 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-GL-A4EM       TCGA-GL-A59R       TCGA-GL-A59T       TCGA-IA-A40U 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-IZ-A6M8       TCGA-IZ-A6M9       TCGA-J7-8537       TCGA-KV-A6GD 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-MH-A55W       TCGA-MH-A55Z       TCGA-MH-A560 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-MH-A561       TCGA-MH-A562       TCGA-P4-A5E6       TCGA-P4-A5E7 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-P4-A5EA       TCGA-P4-A5EB       TCGA-P4-A5ED       TCGA-PJ-A5Z8 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A4-7286       TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7583 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A4-7585       TCGA-A4-7732       TCGA-A4-7734       TCGA-A4-7915 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A4-7996       TCGA-A4-7997       TCGA-A4-8098       TCGA-A4-8310 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A4-8311       TCGA-A4-8515       TCGA-A4-8517       TCGA-A4-8518 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A4-8630       TCGA-A4-A48D       TCGA-A4-A5XZ       TCGA-A4-A5Y0 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A4-A5Y1       TCGA-A4-A6HP       TCGA-AL-3466       TCGA-AL-3467 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-AL-3468       TCGA-AL-3472       TCGA-AL-3473       TCGA-AL-7173 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE" 
      TCGA-B1-5398       TCGA-B3-3925       TCGA-B3-3926       TCGA-B3-4103 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B9-4113       TCGA-B9-4114 
"ZNF598 WILD-TYPE"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4116       TCGA-B9-4117       TCGA-B9-4617 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B9-5155       TCGA-B9-5156       TCGA-B9-7268       TCGA-B9-A44B 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B9-A5W7       TCGA-B9-A5W8       TCGA-B9-A5W9       TCGA-B9-A69E 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-5875       TCGA-BQ-5876       TCGA-BQ-5877       TCGA-BQ-5878 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE" 
      TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5885       TCGA-BQ-5886 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053 
  "ZNF598 MUTATED" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058       TCGA-BQ-7059 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062       TCGA-DW-5560 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838 
"ZNF598 WILD-TYPE"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE"   "ZNF598 MUTATED" 
      TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7841       TCGA-DW-7842 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-DW-7963       TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6133 
"ZNF598 WILD-TYPE"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EV-5901       TCGA-EV-5902 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-G7-6789       TCGA-G7-6790 
  "ZNF598 MUTATED" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-G7-6792       TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-G7-6797       TCGA-G7-7501       TCGA-G7-7502       TCGA-G7-A4TM 
"ZNF598 WILD-TYPE"   "ZNF598 MUTATED"   "ZNF598 MUTATED" "ZNF598 WILD-TYPE" 
      TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966       TCGA-GL-8500 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-GL-A4EM       TCGA-GL-A59R       TCGA-GL-A59T       TCGA-IA-A40U 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-IZ-A6M8       TCGA-IZ-A6M9       TCGA-J7-8537       TCGA-KV-A6GD 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-MH-A55W       TCGA-MH-A55Z       TCGA-MH-A560 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-MH-A561       TCGA-MH-A562       TCGA-P4-A5E6       TCGA-P4-A5E7 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-P4-A5EA       TCGA-P4-A5EB       TCGA-P4-A5ED       TCGA-PJ-A5Z8 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
[1] "hr=" "1.8"
D5V2, continuous
                  vv
clus               STAGE I STAGE II STAGE III STAGE IV
  ZNF598 MUTATED         6        1         3        2
  ZNF598 WILD-TYPE      83        9        33        8
D5V3, multiclass
           clus
vv          ZNF598 MUTATED ZNF598 WILD-TYPE
  STAGE I                6               83
  STAGE II               1                9
  STAGE III              3               33
  STAGE IV               2                8
                  vv
clus               T1 T2 T3+T4
  ZNF598 MUTATED    6  1     5
  ZNF598 WILD-TYPE 90 15    38
D5V4, multiclass
       clus
vv      ZNF598 MUTATED ZNF598 WILD-TYPE
  T1                 6               90
  T2                 1               15
  T3+T4              5               38
                  vv
clus               N0 N1 N2
  ZNF598 MUTATED    2  3  0
  ZNF598 WILD-TYPE 24 13  4
D5V5, multiclass
    clus
vv   ZNF598 MUTATED ZNF598 WILD-TYPE
  N0              2               24
  N1              3               13
  N2              0                4
                  vv
clus               M0 M1 MX
  ZNF598 MUTATED    4  2  6
  ZNF598 WILD-TYPE 55  4 71
D5V6, multiclass
    clus
vv   ZNF598 MUTATED ZNF598 WILD-TYPE
  M0              4               55
  M1              2                4
  MX              6               71
D5V7, binary
                  cls
clus                 0   1
  ZNF598 MUTATED     4   8
  ZNF598 WILD-TYPE  43 100
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF598 MUTATED      4    8
  ZNF598 WILD-TYPE   43  100
        clus
vv       ZNF598 MUTATED ZNF598 WILD-TYPE
  FEMALE              4               43
  MALE                8              100
D5V8, continuous
D5V9, continuous
D5V10, continuous

Clustering(6) Variable = BMS1 MUTATION ANALYSIS
D6V1, survival
                sevent
clus2              0   1
  BMS1 MUTATED    13   0
  BMS1 WILD-TYPE 112  17
  BMS1 MUTATED BMS1 WILD-TYPE 
            13            129 
  BMS1 MUTATED BMS1 WILD-TYPE 
             0             17 
$`BMS1 MUTATED`
TCGA-A4-7915 TCGA-A4-A6HP TCGA-B9-4114 TCGA-B9-4116 TCGA-BQ-7044 TCGA-BQ-7060 
        0.23         0.13        28.18        20.61       123.62         7.04 
TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DZ-6135 TCGA-G7-6790 TCGA-G7-6796 
       37.55        24.46        13.78        54.90        51.78        34.82 
TCGA-G7-6797 
       25.15 

$`BMS1 WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7585 TCGA-A4-7732 
       18.21         0.69        16.21         0.10        35.18        19.13 
TCGA-A4-7734 TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 
        0.89         1.61         0.07         4.60         0.03         0.07 
TCGA-A4-8515 TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A48D TCGA-A4-A5XZ 
        0.69         0.03         0.10         0.30         0.03         0.07 
TCGA-A4-A5Y0 TCGA-A4-A5Y1 TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3472 
        3.88         2.86         9.63        58.45        53.79        30.35 
TCGA-AL-3473 TCGA-AL-7173 TCGA-B1-5398 TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 
       25.08        44.61        19.56        33.83        10.09        30.58 
TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4115 TCGA-B9-4117 TCGA-B9-4617 
       34.49        12.46        50.50        26.40         0.46         1.15 
TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-B9-A44B TCGA-B9-A5W7 TCGA-B9-A5W8 
       15.12        43.99        22.06         2.10         9.14         6.81 
TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 TCGA-BQ-5878 
        0.16         3.35        86.76        19.27         8.88        63.72 
TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 TCGA-BQ-5884 
       22.92        43.20        47.80        21.63        40.83        26.04 
TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 TCGA-BQ-5890 
       30.28        26.04        25.35        13.25        10.88         7.66 
TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7045 TCGA-BQ-7046 
        0.95        11.97         7.92         2.76        48.26        96.92 
TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 
       93.34        44.84        61.28        50.40        49.84        26.27 
TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 
       20.12        11.28         7.63         7.17         3.81        11.61 
TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 TCGA-DW-7963 
       13.61       129.86         3.75        14.63         3.02        28.80 
TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-EV-5901 TCGA-EV-5902 
       79.86        80.88        51.19        61.02        34.19        19.00 
TCGA-EV-5903 TCGA-F9-A4JJ TCGA-G7-6789 TCGA-G7-6792 TCGA-G7-6793 TCGA-G7-6795 
       24.89         3.19         4.01        48.62        11.05        39.25 
TCGA-G7-7501 TCGA-G7-7502 TCGA-G7-A4TM TCGA-GL-6846 TCGA-GL-7773 TCGA-GL-7966 
       14.66        25.84         9.17       194.79        12.92         3.68 
TCGA-GL-8500 TCGA-GL-A4EM TCGA-GL-A59R TCGA-GL-A59T TCGA-IA-A40U TCGA-IA-A40X 
        7.76         1.05         5.85         2.99        16.80        14.14 
TCGA-IA-A40Y TCGA-IZ-8195 TCGA-IZ-8196 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-J7-8537 
        2.04        22.26        21.34         4.80         0.07         0.13 
TCGA-KV-A6GD TCGA-KV-A6GE TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 
        5.26        16.64        13.08        12.85        17.85        14.40 
TCGA-MH-A562 TCGA-P4-A5E6 TCGA-P4-A5E7 TCGA-P4-A5EA TCGA-P4-A5EB TCGA-P4-A5ED 
        9.60        99.78        87.22         6.61        84.95        92.58 
TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 TCGA-Q2-A5QZ 
        3.72         5.72         1.87 

  BMS1 MUTATED BMS1 WILD-TYPE 
          0.13           0.03 
  BMS1 MUTATED BMS1 WILD-TYPE 
        123.62         194.79 
  BMS1 MUTATED BMS1 WILD-TYPE 
         25.15          14.14 
[1] "0.1 - 123.6 (25.1)" "0.0 - 194.8 (14.1)"
    TCGA-A4-7286     TCGA-A4-7287     TCGA-A4-7288     TCGA-A4-7583 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-A4-7585     TCGA-A4-7732     TCGA-A4-7734     TCGA-A4-7915 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE"   "BMS1 MUTATED" 
    TCGA-A4-7996     TCGA-A4-7997     TCGA-A4-8098     TCGA-A4-8310 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-A4-8311     TCGA-A4-8515     TCGA-A4-8517     TCGA-A4-8518 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-A4-8630     TCGA-A4-A48D     TCGA-A4-A5XZ     TCGA-A4-A5Y0 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-A4-A5Y1     TCGA-A4-A6HP     TCGA-AL-3466     TCGA-AL-3467 
"BMS1 WILD-TYPE"   "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-AL-3468     TCGA-AL-3472     TCGA-AL-3473     TCGA-AL-7173 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-B1-5398     TCGA-B3-3925     TCGA-B3-3926     TCGA-B3-4103 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-B3-4104     TCGA-B3-8121     TCGA-B9-4113     TCGA-B9-4114 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE"   "BMS1 MUTATED" 
    TCGA-B9-4115     TCGA-B9-4116     TCGA-B9-4117     TCGA-B9-4617 
"BMS1 WILD-TYPE"   "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-B9-5155     TCGA-B9-5156     TCGA-B9-7268     TCGA-B9-A44B 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-B9-A5W7     TCGA-B9-A5W8     TCGA-B9-A5W9     TCGA-B9-A69E 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-5875     TCGA-BQ-5876     TCGA-BQ-5877     TCGA-BQ-5878 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5881     TCGA-BQ-5882 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-5883     TCGA-BQ-5884     TCGA-BQ-5885     TCGA-BQ-5886 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-7044     TCGA-BQ-7045     TCGA-BQ-7046     TCGA-BQ-7048 
  "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-7049     TCGA-BQ-7050     TCGA-BQ-7051     TCGA-BQ-7053 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-7055     TCGA-BQ-7056     TCGA-BQ-7058     TCGA-BQ-7059 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-7060     TCGA-BQ-7061     TCGA-BQ-7062     TCGA-DW-5560 
  "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-DW-5561     TCGA-DW-7834     TCGA-DW-7837     TCGA-DW-7838 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE"   "BMS1 MUTATED"   "BMS1 MUTATED" 
    TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7841     TCGA-DW-7842 
  "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-DW-7963     TCGA-DZ-6131     TCGA-DZ-6132     TCGA-DZ-6133 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-DZ-6134     TCGA-DZ-6135     TCGA-EV-5901     TCGA-EV-5902 
"BMS1 WILD-TYPE"   "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-EV-5903     TCGA-F9-A4JJ     TCGA-G7-6789     TCGA-G7-6790 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE"   "BMS1 MUTATED" 
    TCGA-G7-6792     TCGA-G7-6793     TCGA-G7-6795     TCGA-G7-6796 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE"   "BMS1 MUTATED" 
    TCGA-G7-6797     TCGA-G7-7501     TCGA-G7-7502     TCGA-G7-A4TM 
  "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-GL-6846     TCGA-GL-7773     TCGA-GL-7966     TCGA-GL-8500 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-GL-A4EM     TCGA-GL-A59R     TCGA-GL-A59T     TCGA-IA-A40U 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-IA-A40X     TCGA-IA-A40Y     TCGA-IZ-8195     TCGA-IZ-8196 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-IZ-A6M8     TCGA-IZ-A6M9     TCGA-J7-8537     TCGA-KV-A6GD 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-KV-A6GE     TCGA-MH-A55W     TCGA-MH-A55Z     TCGA-MH-A560 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-MH-A561     TCGA-MH-A562     TCGA-P4-A5E6     TCGA-P4-A5E7 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-P4-A5EA     TCGA-P4-A5EB     TCGA-P4-A5ED     TCGA-PJ-A5Z8 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-PJ-A5Z9     TCGA-Q2-A5QZ 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-A4-7286     TCGA-A4-7287     TCGA-A4-7288     TCGA-A4-7583 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-A4-7585     TCGA-A4-7732     TCGA-A4-7734     TCGA-A4-7915 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE"   "BMS1 MUTATED" 
    TCGA-A4-7996     TCGA-A4-7997     TCGA-A4-8098     TCGA-A4-8310 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-A4-8311     TCGA-A4-8515     TCGA-A4-8517     TCGA-A4-8518 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-A4-8630     TCGA-A4-A48D     TCGA-A4-A5XZ     TCGA-A4-A5Y0 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-A4-A5Y1     TCGA-A4-A6HP     TCGA-AL-3466     TCGA-AL-3467 
"BMS1 WILD-TYPE"   "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-AL-3468     TCGA-AL-3472     TCGA-AL-3473     TCGA-AL-7173 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-B1-5398     TCGA-B3-3925     TCGA-B3-3926     TCGA-B3-4103 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-B3-4104     TCGA-B3-8121     TCGA-B9-4113     TCGA-B9-4114 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE"   "BMS1 MUTATED" 
    TCGA-B9-4115     TCGA-B9-4116     TCGA-B9-4117     TCGA-B9-4617 
"BMS1 WILD-TYPE"   "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-B9-5155     TCGA-B9-5156     TCGA-B9-7268     TCGA-B9-A44B 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-B9-A5W7     TCGA-B9-A5W8     TCGA-B9-A5W9     TCGA-B9-A69E 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-5875     TCGA-BQ-5876     TCGA-BQ-5877     TCGA-BQ-5878 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5881     TCGA-BQ-5882 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-5883     TCGA-BQ-5884     TCGA-BQ-5885     TCGA-BQ-5886 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-7044     TCGA-BQ-7045     TCGA-BQ-7046     TCGA-BQ-7048 
  "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-7049     TCGA-BQ-7050     TCGA-BQ-7051     TCGA-BQ-7053 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-7055     TCGA-BQ-7056     TCGA-BQ-7058     TCGA-BQ-7059 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-7060     TCGA-BQ-7061     TCGA-BQ-7062     TCGA-DW-5560 
  "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-DW-5561     TCGA-DW-7834     TCGA-DW-7837     TCGA-DW-7838 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE"   "BMS1 MUTATED"   "BMS1 MUTATED" 
    TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7841     TCGA-DW-7842 
  "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-DW-7963     TCGA-DZ-6131     TCGA-DZ-6132     TCGA-DZ-6133 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-DZ-6134     TCGA-DZ-6135     TCGA-EV-5901     TCGA-EV-5902 
"BMS1 WILD-TYPE"   "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-EV-5903     TCGA-F9-A4JJ     TCGA-G7-6789     TCGA-G7-6790 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE"   "BMS1 MUTATED" 
    TCGA-G7-6792     TCGA-G7-6793     TCGA-G7-6795     TCGA-G7-6796 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE"   "BMS1 MUTATED" 
    TCGA-G7-6797     TCGA-G7-7501     TCGA-G7-7502     TCGA-G7-A4TM 
  "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-GL-6846     TCGA-GL-7773     TCGA-GL-7966     TCGA-GL-8500 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-GL-A4EM     TCGA-GL-A59R     TCGA-GL-A59T     TCGA-IA-A40U 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-IA-A40X     TCGA-IA-A40Y     TCGA-IZ-8195     TCGA-IZ-8196 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-IZ-A6M8     TCGA-IZ-A6M9     TCGA-J7-8537     TCGA-KV-A6GD 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-KV-A6GE     TCGA-MH-A55W     TCGA-MH-A55Z     TCGA-MH-A560 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-MH-A561     TCGA-MH-A562     TCGA-P4-A5E6     TCGA-P4-A5E7 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-P4-A5EA     TCGA-P4-A5EB     TCGA-P4-A5ED     TCGA-PJ-A5Z8 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-PJ-A5Z9     TCGA-Q2-A5QZ 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-A4-7286     TCGA-A4-7287     TCGA-A4-7288     TCGA-A4-7583 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-A4-7585     TCGA-A4-7732     TCGA-A4-7734     TCGA-A4-7915 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE"   "BMS1 MUTATED" 
    TCGA-A4-7996     TCGA-A4-7997     TCGA-A4-8098     TCGA-A4-8310 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-A4-8311     TCGA-A4-8515     TCGA-A4-8517     TCGA-A4-8518 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-A4-8630     TCGA-A4-A48D     TCGA-A4-A5XZ     TCGA-A4-A5Y0 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-A4-A5Y1     TCGA-A4-A6HP     TCGA-AL-3466     TCGA-AL-3467 
"BMS1 WILD-TYPE"   "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-AL-3468     TCGA-AL-3472     TCGA-AL-3473     TCGA-AL-7173 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-B1-5398     TCGA-B3-3925     TCGA-B3-3926     TCGA-B3-4103 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-B3-4104     TCGA-B3-8121     TCGA-B9-4113     TCGA-B9-4114 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE"   "BMS1 MUTATED" 
    TCGA-B9-4115     TCGA-B9-4116     TCGA-B9-4117     TCGA-B9-4617 
"BMS1 WILD-TYPE"   "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-B9-5155     TCGA-B9-5156     TCGA-B9-7268     TCGA-B9-A44B 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-B9-A5W7     TCGA-B9-A5W8     TCGA-B9-A5W9     TCGA-B9-A69E 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-5875     TCGA-BQ-5876     TCGA-BQ-5877     TCGA-BQ-5878 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5881     TCGA-BQ-5882 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-5883     TCGA-BQ-5884     TCGA-BQ-5885     TCGA-BQ-5886 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-7044     TCGA-BQ-7045     TCGA-BQ-7046     TCGA-BQ-7048 
  "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-7049     TCGA-BQ-7050     TCGA-BQ-7051     TCGA-BQ-7053 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-7055     TCGA-BQ-7056     TCGA-BQ-7058     TCGA-BQ-7059 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-7060     TCGA-BQ-7061     TCGA-BQ-7062     TCGA-DW-5560 
  "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-DW-5561     TCGA-DW-7834     TCGA-DW-7837     TCGA-DW-7838 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE"   "BMS1 MUTATED"   "BMS1 MUTATED" 
    TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7841     TCGA-DW-7842 
  "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-DW-7963     TCGA-DZ-6131     TCGA-DZ-6132     TCGA-DZ-6133 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-DZ-6134     TCGA-DZ-6135     TCGA-EV-5901     TCGA-EV-5902 
"BMS1 WILD-TYPE"   "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-EV-5903     TCGA-F9-A4JJ     TCGA-G7-6789     TCGA-G7-6790 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE"   "BMS1 MUTATED" 
    TCGA-G7-6792     TCGA-G7-6793     TCGA-G7-6795     TCGA-G7-6796 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE"   "BMS1 MUTATED" 
    TCGA-G7-6797     TCGA-G7-7501     TCGA-G7-7502     TCGA-G7-A4TM 
  "BMS1 MUTATED" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-GL-6846     TCGA-GL-7773     TCGA-GL-7966     TCGA-GL-8500 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-GL-A4EM     TCGA-GL-A59R     TCGA-GL-A59T     TCGA-IA-A40U 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-IA-A40X     TCGA-IA-A40Y     TCGA-IZ-8195     TCGA-IZ-8196 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-IZ-A6M8     TCGA-IZ-A6M9     TCGA-J7-8537     TCGA-KV-A6GD 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-KV-A6GE     TCGA-MH-A55W     TCGA-MH-A55Z     TCGA-MH-A560 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-MH-A561     TCGA-MH-A562     TCGA-P4-A5E6     TCGA-P4-A5E7 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-P4-A5EA     TCGA-P4-A5EB     TCGA-P4-A5ED     TCGA-PJ-A5Z8 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-PJ-A5Z9     TCGA-Q2-A5QZ 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
[1] "hr="     "8.1e+07"
D6V2, continuous
                vv
clus             STAGE I STAGE II STAGE III STAGE IV
  BMS1 MUTATED         8        1         2        0
  BMS1 WILD-TYPE      81        9        34       10
D6V3, multiclass
           clus
vv          BMS1 MUTATED BMS1 WILD-TYPE
  STAGE I              8             81
  STAGE II             1              9
  STAGE III            2             34
  STAGE IV             0             10
                vv
clus             T1 T2 T3+T4
  BMS1 MUTATED    9  3     1
  BMS1 WILD-TYPE 87 13    42
D6V4, multiclass
       clus
vv      BMS1 MUTATED BMS1 WILD-TYPE
  T1               9             87
  T2               3             13
  T3+T4            1             42
                vv
clus             N0 N1 N2
  BMS1 MUTATED    1  0  0
  BMS1 WILD-TYPE 25 16  4
D6V5, multiclass
[1] "Remove cluster labels:" "BMS1 MUTATED"          
clus
  BMS1 MUTATED BMS1 WILD-TYPE 
             1             45 
    TCGA-A4-7583     TCGA-A4-7585     TCGA-A4-A57E     TCGA-A4-A5Y1 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-AL-3466     TCGA-AL-3472     TCGA-AL-3473     TCGA-AL-7173 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-B1-5398     TCGA-B9-7268     TCGA-BQ-5877     TCGA-BQ-5878 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5882     TCGA-BQ-5885 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-7045     TCGA-BQ-7048     TCGA-BQ-7050     TCGA-BQ-7051 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-BQ-7056     TCGA-BQ-7058     TCGA-DW-7963     TCGA-DZ-6131 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-G7-6789     TCGA-G7-6793     TCGA-G7-6795     TCGA-G7-7501 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-GL-6846     TCGA-GL-7966     TCGA-GL-A59R     TCGA-IA-A40U 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-IA-A40Y     TCGA-J7-6720     TCGA-J7-8537     TCGA-P4-A5E6 
"BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" "BMS1 WILD-TYPE" 
    TCGA-P4-A5EA 
"BMS1 WILD-TYPE" 
                vv
clus             M0 M1 MX
  BMS1 MUTATED    2  0  9
  BMS1 WILD-TYPE 57  6 68
D6V6, multiclass
    clus
vv   BMS1 MUTATED BMS1 WILD-TYPE
  M0            2             57
  M1            0              6
  MX            9             68
D6V7, binary
                cls
clus              0  1
  BMS1 MUTATED    3 10
  BMS1 WILD-TYPE 44 98
[1] "tbl2"
                cls
clus             [,1] [,2]
  BMS1 MUTATED      3   10
  BMS1 WILD-TYPE   44   98
        clus
vv       BMS1 MUTATED BMS1 WILD-TYPE
  FEMALE            3             44
  MALE             10             98
D6V8, continuous
D6V9, continuous
D6V10, continuous

Clustering(7) Variable = MUC2 MUTATION ANALYSIS
D7V1, survival
                sevent
clus2              0   1
  MUC2 MUTATED    18   5
  MUC2 WILD-TYPE 107  12
  MUC2 MUTATED MUC2 WILD-TYPE 
            23            119 
  MUC2 MUTATED MUC2 WILD-TYPE 
             5             12 
$`MUC2 MUTATED`
TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-A48D TCGA-A4-A5Y1 TCGA-AL-3473 TCGA-B1-5398 
       16.21         0.10         0.03         2.86        25.08        19.56 
TCGA-B3-4103 TCGA-BQ-5877 TCGA-BQ-5880 TCGA-BQ-5889 TCGA-BQ-5890 TCGA-BQ-7046 
       30.58         8.88        43.20        10.88         7.66        96.92 
TCGA-BQ-7059 TCGA-BQ-7061 TCGA-DW-7963 TCGA-DZ-6133 TCGA-G7-6797 TCGA-GL-A4EM 
        7.63         7.17        28.80        51.19        25.15         1.05 
TCGA-GL-A59T TCGA-IZ-8196 TCGA-P4-A5E6 TCGA-P4-A5EA TCGA-Q2-A5QZ 
        2.99        21.34        99.78         6.61         1.87 

$`MUC2 WILD-TYPE`
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7585 TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7915 
       18.21         0.69        35.18        19.13         0.89         0.23 
TCGA-A4-7996 TCGA-A4-7997 TCGA-A4-8098 TCGA-A4-8310 TCGA-A4-8311 TCGA-A4-8515 
        1.61         0.07         4.60         0.03         0.07         0.69 
TCGA-A4-8517 TCGA-A4-8518 TCGA-A4-8630 TCGA-A4-A5XZ TCGA-A4-A5Y0 TCGA-A4-A6HP 
        0.03         0.10         0.30         0.07         3.88         0.13 
TCGA-AL-3466 TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3472 TCGA-AL-7173 TCGA-B3-3925 
        9.63        58.45        53.79        30.35        44.61        33.83 
TCGA-B3-3926 TCGA-B3-4104 TCGA-B3-8121 TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 
       10.09        34.49        12.46        50.50        28.18        26.40 
TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 
       20.61         0.46         1.15        15.12        43.99        22.06 
TCGA-B9-A44B TCGA-B9-A5W7 TCGA-B9-A5W8 TCGA-B9-A5W9 TCGA-B9-A69E TCGA-BQ-5875 
        2.10         9.14         6.81         0.16         3.35        86.76 
TCGA-BQ-5876 TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 
       19.27        63.72        22.92        47.80        21.63        40.83 
TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5891 
       26.04        30.28        26.04        25.35        13.25         0.95 
TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 TCGA-BQ-7045 TCGA-BQ-7048 
       11.97         7.92         2.76       123.62        48.26        93.34 
TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 
       44.84        61.28        50.40        49.84        26.27        20.12 
TCGA-BQ-7058 TCGA-BQ-7060 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 
       11.28         7.04         3.81        11.61        13.61       129.86 
TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 
       37.55        24.46        13.78         3.75        14.63         3.02 
TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 TCGA-EV-5902 
       79.86        80.88        61.02        54.90        34.19        19.00 
TCGA-EV-5903 TCGA-F9-A4JJ TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 
       24.89         3.19         4.01        51.78        48.62        11.05 
TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-7501 TCGA-G7-7502 TCGA-G7-A4TM TCGA-GL-6846 
       39.25        34.82        14.66        25.84         9.17       194.79 
TCGA-GL-7773 TCGA-GL-7966 TCGA-GL-8500 TCGA-GL-A59R TCGA-IA-A40U TCGA-IA-A40X 
       12.92         3.68         7.76         5.85        16.80        14.14 
TCGA-IA-A40Y TCGA-IZ-8195 TCGA-IZ-A6M8 TCGA-IZ-A6M9 TCGA-J7-8537 TCGA-KV-A6GD 
        2.04        22.26         4.80         0.07         0.13         5.26 
TCGA-KV-A6GE TCGA-MH-A55W TCGA-MH-A55Z TCGA-MH-A560 TCGA-MH-A561 TCGA-MH-A562 
       16.64        13.08        12.85        17.85        14.40         9.60 
TCGA-P4-A5E7 TCGA-P4-A5EB TCGA-P4-A5ED TCGA-PJ-A5Z8 TCGA-PJ-A5Z9 
       87.22        84.95        92.58         3.72         5.72 

  MUC2 MUTATED MUC2 WILD-TYPE 
          0.03           0.03 
  MUC2 MUTATED MUC2 WILD-TYPE 
         99.78         194.79 
  MUC2 MUTATED MUC2 WILD-TYPE 
         10.88          14.66 
[1] "0.0 - 99.8 (10.9)"  "0.0 - 194.8 (14.7)"
    TCGA-A4-7286     TCGA-A4-7287     TCGA-A4-7288     TCGA-A4-7583 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED"   "MUC2 MUTATED" 
    TCGA-A4-7585     TCGA-A4-7732     TCGA-A4-7734     TCGA-A4-7915 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-A4-7996     TCGA-A4-7997     TCGA-A4-8098     TCGA-A4-8310 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-A4-8311     TCGA-A4-8515     TCGA-A4-8517     TCGA-A4-8518 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-A4-8630     TCGA-A4-A48D     TCGA-A4-A5XZ     TCGA-A4-A5Y0 
"MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-A4-A5Y1     TCGA-A4-A6HP     TCGA-AL-3466     TCGA-AL-3467 
  "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-AL-3468     TCGA-AL-3472     TCGA-AL-3473     TCGA-AL-7173 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" 
    TCGA-B1-5398     TCGA-B3-3925     TCGA-B3-3926     TCGA-B3-4103 
  "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" 
    TCGA-B3-4104     TCGA-B3-8121     TCGA-B9-4113     TCGA-B9-4114 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-B9-4115     TCGA-B9-4116     TCGA-B9-4117     TCGA-B9-4617 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-B9-5155     TCGA-B9-5156     TCGA-B9-7268     TCGA-B9-A44B 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-B9-A5W7     TCGA-B9-A5W8     TCGA-B9-A5W9     TCGA-B9-A69E 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-BQ-5875     TCGA-BQ-5876     TCGA-BQ-5877     TCGA-BQ-5878 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" 
    TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5881     TCGA-BQ-5882 
"MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-BQ-5883     TCGA-BQ-5884     TCGA-BQ-5885     TCGA-BQ-5886 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED"   "MUC2 MUTATED" 
    TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-BQ-7044     TCGA-BQ-7045     TCGA-BQ-7046     TCGA-BQ-7048 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" 
    TCGA-BQ-7049     TCGA-BQ-7050     TCGA-BQ-7051     TCGA-BQ-7053 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-BQ-7055     TCGA-BQ-7056     TCGA-BQ-7058     TCGA-BQ-7059 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" 
    TCGA-BQ-7060     TCGA-BQ-7061     TCGA-BQ-7062     TCGA-DW-5560 
"MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-DW-5561     TCGA-DW-7834     TCGA-DW-7837     TCGA-DW-7838 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7841     TCGA-DW-7842 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-DW-7963     TCGA-DZ-6131     TCGA-DZ-6132     TCGA-DZ-6133 
  "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" 
    TCGA-DZ-6134     TCGA-DZ-6135     TCGA-EV-5901     TCGA-EV-5902 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-EV-5903     TCGA-F9-A4JJ     TCGA-G7-6789     TCGA-G7-6790 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-G7-6792     TCGA-G7-6793     TCGA-G7-6795     TCGA-G7-6796 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-G7-6797     TCGA-G7-7501     TCGA-G7-7502     TCGA-G7-A4TM 
  "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-GL-6846     TCGA-GL-7773     TCGA-GL-7966     TCGA-GL-8500 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-GL-A4EM     TCGA-GL-A59R     TCGA-GL-A59T     TCGA-IA-A40U 
  "MUC2 MUTATED" "MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" 
    TCGA-IA-A40X     TCGA-IA-A40Y     TCGA-IZ-8195     TCGA-IZ-8196 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" 
    TCGA-IZ-A6M8     TCGA-IZ-A6M9     TCGA-J7-8537     TCGA-KV-A6GD 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-KV-A6GE     TCGA-MH-A55W     TCGA-MH-A55Z     TCGA-MH-A560 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-MH-A561     TCGA-MH-A562     TCGA-P4-A5E6     TCGA-P4-A5E7 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" 
    TCGA-P4-A5EA     TCGA-P4-A5EB     TCGA-P4-A5ED     TCGA-PJ-A5Z8 
  "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-PJ-A5Z9     TCGA-Q2-A5QZ 
"MUC2 WILD-TYPE"   "MUC2 MUTATED" 
    TCGA-A4-7286     TCGA-A4-7287     TCGA-A4-7288     TCGA-A4-7583 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED"   "MUC2 MUTATED" 
    TCGA-A4-7585     TCGA-A4-7732     TCGA-A4-7734     TCGA-A4-7915 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-A4-7996     TCGA-A4-7997     TCGA-A4-8098     TCGA-A4-8310 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-A4-8311     TCGA-A4-8515     TCGA-A4-8517     TCGA-A4-8518 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-A4-8630     TCGA-A4-A48D     TCGA-A4-A5XZ     TCGA-A4-A5Y0 
"MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-A4-A5Y1     TCGA-A4-A6HP     TCGA-AL-3466     TCGA-AL-3467 
  "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-AL-3468     TCGA-AL-3472     TCGA-AL-3473     TCGA-AL-7173 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" 
    TCGA-B1-5398     TCGA-B3-3925     TCGA-B3-3926     TCGA-B3-4103 
  "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" 
    TCGA-B3-4104     TCGA-B3-8121     TCGA-B9-4113     TCGA-B9-4114 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-B9-4115     TCGA-B9-4116     TCGA-B9-4117     TCGA-B9-4617 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-B9-5155     TCGA-B9-5156     TCGA-B9-7268     TCGA-B9-A44B 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-B9-A5W7     TCGA-B9-A5W8     TCGA-B9-A5W9     TCGA-B9-A69E 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-BQ-5875     TCGA-BQ-5876     TCGA-BQ-5877     TCGA-BQ-5878 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" 
    TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5881     TCGA-BQ-5882 
"MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-BQ-5883     TCGA-BQ-5884     TCGA-BQ-5885     TCGA-BQ-5886 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED"   "MUC2 MUTATED" 
    TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-BQ-7044     TCGA-BQ-7045     TCGA-BQ-7046     TCGA-BQ-7048 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" 
    TCGA-BQ-7049     TCGA-BQ-7050     TCGA-BQ-7051     TCGA-BQ-7053 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-BQ-7055     TCGA-BQ-7056     TCGA-BQ-7058     TCGA-BQ-7059 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" 
    TCGA-BQ-7060     TCGA-BQ-7061     TCGA-BQ-7062     TCGA-DW-5560 
"MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-DW-5561     TCGA-DW-7834     TCGA-DW-7837     TCGA-DW-7838 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7841     TCGA-DW-7842 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-DW-7963     TCGA-DZ-6131     TCGA-DZ-6132     TCGA-DZ-6133 
  "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" 
    TCGA-DZ-6134     TCGA-DZ-6135     TCGA-EV-5901     TCGA-EV-5902 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-EV-5903     TCGA-F9-A4JJ     TCGA-G7-6789     TCGA-G7-6790 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-G7-6792     TCGA-G7-6793     TCGA-G7-6795     TCGA-G7-6796 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-G7-6797     TCGA-G7-7501     TCGA-G7-7502     TCGA-G7-A4TM 
  "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-GL-6846     TCGA-GL-7773     TCGA-GL-7966     TCGA-GL-8500 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-GL-A4EM     TCGA-GL-A59R     TCGA-GL-A59T     TCGA-IA-A40U 
  "MUC2 MUTATED" "MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" 
    TCGA-IA-A40X     TCGA-IA-A40Y     TCGA-IZ-8195     TCGA-IZ-8196 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" 
    TCGA-IZ-A6M8     TCGA-IZ-A6M9     TCGA-J7-8537     TCGA-KV-A6GD 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-KV-A6GE     TCGA-MH-A55W     TCGA-MH-A55Z     TCGA-MH-A560 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-MH-A561     TCGA-MH-A562     TCGA-P4-A5E6     TCGA-P4-A5E7 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" 
    TCGA-P4-A5EA     TCGA-P4-A5EB     TCGA-P4-A5ED     TCGA-PJ-A5Z8 
  "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-PJ-A5Z9     TCGA-Q2-A5QZ 
"MUC2 WILD-TYPE"   "MUC2 MUTATED" 
    TCGA-A4-7286     TCGA-A4-7287     TCGA-A4-7288     TCGA-A4-7583 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED"   "MUC2 MUTATED" 
    TCGA-A4-7585     TCGA-A4-7732     TCGA-A4-7734     TCGA-A4-7915 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-A4-7996     TCGA-A4-7997     TCGA-A4-8098     TCGA-A4-8310 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-A4-8311     TCGA-A4-8515     TCGA-A4-8517     TCGA-A4-8518 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-A4-8630     TCGA-A4-A48D     TCGA-A4-A5XZ     TCGA-A4-A5Y0 
"MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-A4-A5Y1     TCGA-A4-A6HP     TCGA-AL-3466     TCGA-AL-3467 
  "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-AL-3468     TCGA-AL-3472     TCGA-AL-3473     TCGA-AL-7173 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" 
    TCGA-B1-5398     TCGA-B3-3925     TCGA-B3-3926     TCGA-B3-4103 
  "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" 
    TCGA-B3-4104     TCGA-B3-8121     TCGA-B9-4113     TCGA-B9-4114 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-B9-4115     TCGA-B9-4116     TCGA-B9-4117     TCGA-B9-4617 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-B9-5155     TCGA-B9-5156     TCGA-B9-7268     TCGA-B9-A44B 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-B9-A5W7     TCGA-B9-A5W8     TCGA-B9-A5W9     TCGA-B9-A69E 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-BQ-5875     TCGA-BQ-5876     TCGA-BQ-5877     TCGA-BQ-5878 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" 
    TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5881     TCGA-BQ-5882 
"MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-BQ-5883     TCGA-BQ-5884     TCGA-BQ-5885     TCGA-BQ-5886 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED"   "MUC2 MUTATED" 
    TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-BQ-7044     TCGA-BQ-7045     TCGA-BQ-7046     TCGA-BQ-7048 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" 
    TCGA-BQ-7049     TCGA-BQ-7050     TCGA-BQ-7051     TCGA-BQ-7053 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-BQ-7055     TCGA-BQ-7056     TCGA-BQ-7058     TCGA-BQ-7059 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" 
    TCGA-BQ-7060     TCGA-BQ-7061     TCGA-BQ-7062     TCGA-DW-5560 
"MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-DW-5561     TCGA-DW-7834     TCGA-DW-7837     TCGA-DW-7838 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7841     TCGA-DW-7842 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-DW-7963     TCGA-DZ-6131     TCGA-DZ-6132     TCGA-DZ-6133 
  "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" 
    TCGA-DZ-6134     TCGA-DZ-6135     TCGA-EV-5901     TCGA-EV-5902 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-EV-5903     TCGA-F9-A4JJ     TCGA-G7-6789     TCGA-G7-6790 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-G7-6792     TCGA-G7-6793     TCGA-G7-6795     TCGA-G7-6796 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-G7-6797     TCGA-G7-7501     TCGA-G7-7502     TCGA-G7-A4TM 
  "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-GL-6846     TCGA-GL-7773     TCGA-GL-7966     TCGA-GL-8500 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-GL-A4EM     TCGA-GL-A59R     TCGA-GL-A59T     TCGA-IA-A40U 
  "MUC2 MUTATED" "MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" 
    TCGA-IA-A40X     TCGA-IA-A40Y     TCGA-IZ-8195     TCGA-IZ-8196 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" 
    TCGA-IZ-A6M8     TCGA-IZ-A6M9     TCGA-J7-8537     TCGA-KV-A6GD 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-KV-A6GE     TCGA-MH-A55W     TCGA-MH-A55Z     TCGA-MH-A560 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-MH-A561     TCGA-MH-A562     TCGA-P4-A5E6     TCGA-P4-A5E7 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE"   "MUC2 MUTATED" "MUC2 WILD-TYPE" 
    TCGA-P4-A5EA     TCGA-P4-A5EB     TCGA-P4-A5ED     TCGA-PJ-A5Z8 
  "MUC2 MUTATED" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-PJ-A5Z9     TCGA-Q2-A5QZ 
"MUC2 WILD-TYPE"   "MUC2 MUTATED" 
[1] "hr=" "2.6"
D7V2, continuous
                vv
clus             STAGE I STAGE II STAGE III STAGE IV
  MUC2 MUTATED        11        1         9        3
  MUC2 WILD-TYPE      78        9        27        7
D7V3, multiclass
           clus
vv          MUC2 MUTATED MUC2 WILD-TYPE
  STAGE I             11             78
  STAGE II             1              9
  STAGE III            9             27
  STAGE IV             3              7
                vv
clus             T1 T2 T3+T4
  MUC2 MUTATED   15  2     8
  MUC2 WILD-TYPE 81 14    35
D7V4, multiclass
       clus
vv      MUC2 MUTATED MUC2 WILD-TYPE
  T1              15             81
  T2               2             14
  T3+T4            8             35
                vv
clus             N0 N1 N2
  MUC2 MUTATED    6  6  0
  MUC2 WILD-TYPE 20 10  4
D7V5, multiclass
    clus
vv   MUC2 MUTATED MUC2 WILD-TYPE
  N0            6             20
  N1            6             10
  N2            0              4
                vv
clus             M0 M1 MX
  MUC2 MUTATED   10  3 12
  MUC2 WILD-TYPE 49  3 65
D7V6, multiclass
    clus
vv   MUC2 MUTATED MUC2 WILD-TYPE
  M0           10             49
  M1            3              3
  MX           12             65
D7V7, binary
                cls
clus              0  1
  MUC2 MUTATED    6 19
  MUC2 WILD-TYPE 41 89
[1] "tbl2"
                cls
clus             [,1] [,2]
  MUC2 MUTATED      6   19
  MUC2 WILD-TYPE   41   89
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  FEMALE            6             41
  MALE             19             89
D7V8, continuous
D7V9, continuous
[1] "Remove cluster labels:" "MUC2 MUTATED"          
clus
  MUC2 MUTATED MUC2 WILD-TYPE 
             2              7 
    TCGA-B9-A44B     TCGA-B9-A69E     TCGA-GL-7773     TCGA-IA-A40U 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-P4-A5E7     TCGA-P4-A5EB     TCGA-PJ-A5Z9 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
D7V10, continuous
[1] "Remove cluster labels:" "MUC2 MUTATED"          
clus
  MUC2 MUTATED MUC2 WILD-TYPE 
             1              5 
    TCGA-AL-3472     TCGA-B9-A69E     TCGA-GL-7773     TCGA-IA-A40U 
"MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" "MUC2 WILD-TYPE" 
    TCGA-PJ-A5Z9 
"MUC2 WILD-TYPE" 
> q(save="no")
