
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRP-TP/8282842/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRP-TP/8282700/KIRP-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=KIRP-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=KIRP-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRP-TP/8282700/KIRP-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRP-TP/8282842/transformed.cor.cli.txt"

nPatients in clinical file=198, in cluster file=197, common to both=197
[1] "Reduce the number of clustering variables from 80 to 70."
[1]  70 197
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                5               192 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                5               192 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               14               183 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               14               183 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               36               161 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               36               161 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               39               158 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               39               158 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               55               142 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               55               142 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               65               132 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               65               132 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                6               191 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                6               191 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                5               192 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                5               192 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               26               171 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               26               171 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               26               171 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               26               171 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                8               189 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                8               189 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                6               191 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                6               191 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              117                80 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              117                80 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              118                79 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              118                79 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               14               183 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               14               183 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               17               180 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               17               180 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                3               194 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                3               194 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 5                192 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 5                192 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 5                192 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 5                192 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                10                187 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                10                187 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 8                189 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 8                189 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                80                117 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                80                117 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                80                117 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                80                117 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                22                175 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                22                175 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 3                194 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 3                194 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 5                192 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 5                192 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
               105                 92 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
               105                 92 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
               101                 96 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
               101                 96 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
               118                 79 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
               118                 79 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               133                 64 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               133                 64 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 9                188 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 9                188 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 5                192 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 5                192 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 3                194 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 3                194 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 3                194 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 3                194 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                66                131 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                66                131 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                68                129 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                68                129 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                12                185 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                12                185 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 3                194 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 3                194 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               63               134 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               63               134 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               21               176 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               21               176 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               13               184 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               13               184 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               14               183 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               14               183 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                4               193 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                4               193 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               18               179 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               18               179 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               19               178 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               19               178 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                7               190 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                7               190 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                7               190 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                7               190 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               13               184 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               13               184 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               16               181 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               16               181 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
                7               190 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
                7               190 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                4               193 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                4               193 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               22               175 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               22               175 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               24               173 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               24               173 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                12                185 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                12                185 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                12                185 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                12                185 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                10                187 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                10                187 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                14                183 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                14                183 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                18                179 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                18                179 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                35                162 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                35                162 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                19                178 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                19                178 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 4                193 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 4                193 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 5                192 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 5                192 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                 8                189 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                 8                189 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                30                167 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                30                167 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                32                165 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                32                165 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                12                185 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                12                185 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                11                186 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                11                186 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                32                165 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                32                165 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                44                153 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                44                153 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               20               177 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               20               177 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 197 columns.

Variable 1:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 197 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED        0      0      3      0      2
  1P GAIN WILD-TYPE     71     40     34     21     26
D1V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED        0      5      0      0      0
  1P GAIN WILD-TYPE     38     19     33     48     38
D1V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        0      5      0      0
  1P GAIN WILD-TYPE     39     62     59     32
D1V3, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               0                39
  CLUS_2               5                62
  CLUS_3               0                59
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        0      2      3
  1P GAIN WILD-TYPE     70     69     53
D1V4, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               0                70
  CLUS_2               2                69
  CLUS_3               3                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        0      1      4
  1P GAIN WILD-TYPE     65     64     63
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               0                65
  CLUS_2               1                64
  CLUS_3               4                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        0      4      1
  1P GAIN WILD-TYPE     29     74     89
D1V6, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               0                29
  CLUS_2               4                74
  CLUS_3               1                89
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        0      1      4
  1P GAIN WILD-TYPE     57     70     65
D1V7, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               0                57
  CLUS_2               1                70
  CLUS_3               4                65
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        5      0      0
  1P GAIN WILD-TYPE     70     99     23
D1V8, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               5                70
  CLUS_2               0                99
  CLUS_3               0                23

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED        2      0      9      0      3
  1Q GAIN WILD-TYPE     69     40     28     21     25
D2V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED        1     10      2      0      0
  1Q GAIN WILD-TYPE     37     14     31     48     38
D2V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED        1     13      0      0
  1Q GAIN WILD-TYPE     38     54     59     32
D2V3, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               1                38
  CLUS_2              13                54
  CLUS_3               0                59
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        0      9      5
  1Q GAIN WILD-TYPE     70     62     51
D2V4, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               0                70
  CLUS_2               9                62
  CLUS_3               5                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        3      7      4
  1Q GAIN WILD-TYPE     62     58     63
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               3                62
  CLUS_2               7                58
  CLUS_3               4                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        3      8      3
  1Q GAIN WILD-TYPE     26     70     87
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               3                26
  CLUS_2               8                70
  CLUS_3               3                87
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        3      7      4
  1Q GAIN WILD-TYPE     54     64     65
D2V7, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               3                54
  CLUS_2               7                64
  CLUS_3               4                65
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        9      2      3
  1Q GAIN WILD-TYPE     66     97     20
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               9                66
  CLUS_2               2                97
  CLUS_3               3                20

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED        1      2      6      0     27
  2P GAIN WILD-TYPE     70     38     31     21      1
D3V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED        3      7      4     18      1
  2P GAIN WILD-TYPE     35     17     29     30     37
D3V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED       11     11     13      1
  2P GAIN WILD-TYPE     28     56     46     31
D3V3, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              11                28
  CLUS_2              11                56
  CLUS_3              13                46
  CLUS_4               1                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       18     13      5
  2P GAIN WILD-TYPE     52     58     51
D3V4, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              18                52
  CLUS_2              13                58
  CLUS_3               5                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       10      8     18
  2P GAIN WILD-TYPE     55     57     49
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              10                55
  CLUS_2               8                57
  CLUS_3              18                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        5     12     19
  2P GAIN WILD-TYPE     24     66     71
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               5                24
  CLUS_2              12                66
  CLUS_3              19                71
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        9      7     20
  2P GAIN WILD-TYPE     48     64     49
D3V7, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               9                48
  CLUS_2               7                64
  CLUS_3              20                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       11     21      4
  2P GAIN WILD-TYPE     64     78     19
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              11                64
  CLUS_2              21                78
  CLUS_3               4                19

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED        1      2      7      1     28
  2Q GAIN WILD-TYPE     70     38     30     20      0
D4V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED        4      7      4     20      1
  2Q GAIN WILD-TYPE     34     17     29     28     37
D4V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED       12     11     14      2
  2Q GAIN WILD-TYPE     27     56     45     30
D4V3, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              12                27
  CLUS_2              11                56
  CLUS_3              14                45
  CLUS_4               2                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       20     13      6
  2Q GAIN WILD-TYPE     50     58     50
D4V4, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              20                50
  CLUS_2              13                58
  CLUS_3               6                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       10     10     19
  2Q GAIN WILD-TYPE     55     55     48
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              10                55
  CLUS_2              10                55
  CLUS_3              19                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        5     15     19
  2Q GAIN WILD-TYPE     24     63     71
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               5                24
  CLUS_2              15                63
  CLUS_3              19                71
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        9      9     21
  2Q GAIN WILD-TYPE     48     62     48
D4V7, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               9                48
  CLUS_2               9                62
  CLUS_3              21                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       14     21      4
  2Q GAIN WILD-TYPE     61     78     19
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              14                61
  CLUS_2              21                78
  CLUS_3               4                19

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED        8      6      3     20     18
  3P GAIN WILD-TYPE     63     34     34      1     10
D5V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED       11      3      3     26      6
  3P GAIN WILD-TYPE     27     21     30     22     32
D5V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED       19      4     22     10
  3P GAIN WILD-TYPE     20     63     37     22
D5V3, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              19                20
  CLUS_2               4                63
  CLUS_3              22                37
  CLUS_4              10                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       34     15      6
  3P GAIN WILD-TYPE     36     56     50
D5V4, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              34                36
  CLUS_2              15                56
  CLUS_3               6                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       19     12     24
  3P GAIN WILD-TYPE     46     53     43
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              19                46
  CLUS_2              12                53
  CLUS_3              24                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        9     17     29
  3P GAIN WILD-TYPE     20     61     61
D5V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               9                20
  CLUS_2              17                61
  CLUS_3              29                61
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       16     14     25
  3P GAIN WILD-TYPE     41     57     44
D5V7, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              16                41
  CLUS_2              14                57
  CLUS_3              25                44
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       14     37      4
  3P GAIN WILD-TYPE     61     62     19
D5V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              14                61
  CLUS_2              37                62
  CLUS_3               4                19

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED       12      7      5     21     20
  3Q GAIN WILD-TYPE     59     33     32      0      8
D6V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED       12      4      5     30      8
  3Q GAIN WILD-TYPE     26     20     28     18     30
D6V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED       22      6     22     15
  3Q GAIN WILD-TYPE     17     61     37     17
D6V3, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              22                17
  CLUS_2               6                61
  CLUS_3              22                37
  CLUS_4              15                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       36     19     10
  3Q GAIN WILD-TYPE     34     52     46
D6V4, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              36                34
  CLUS_2              19                52
  CLUS_3              10                46
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       26     14     25
  3Q GAIN WILD-TYPE     39     51     42
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              26                39
  CLUS_2              14                51
  CLUS_3              25                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       10     19     36
  3Q GAIN WILD-TYPE     19     59     54
D6V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              10                19
  CLUS_2              19                59
  CLUS_3              36                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       19     18     28
  3Q GAIN WILD-TYPE     38     53     41
D6V7, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              19                38
  CLUS_2              18                53
  CLUS_3              28                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       16     44      5
  3Q GAIN WILD-TYPE     59     55     18
D6V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              16                59
  CLUS_2              44                55
  CLUS_3               5                18

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED        1      1      3      0      1
  4P GAIN WILD-TYPE     70     39     34     21     27
D7V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED        0      1      1      2      0
  4P GAIN WILD-TYPE     38     23     32     46     38
D7V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        0      4      1      1
  4P GAIN WILD-TYPE     39     63     58     31
D7V3, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0                39
  CLUS_2               4                63
  CLUS_3               1                58
  CLUS_4               1                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        2      3      1
  4P GAIN WILD-TYPE     68     68     55
D7V4, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                68
  CLUS_2               3                68
  CLUS_3               1                55
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        2      2      2
  4P GAIN WILD-TYPE     63     63     65
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                63
  CLUS_2               2                63
  CLUS_3               2                65
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        2      2      2
  4P GAIN WILD-TYPE     27     76     88
D7V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                27
  CLUS_2               2                76
  CLUS_3               2                88
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        2      2      2
  4P GAIN WILD-TYPE     55     69     67
D7V7, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                55
  CLUS_2               2                69
  CLUS_3               2                67
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        2      2      2
  4P GAIN WILD-TYPE     73     97     21
D7V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                73
  CLUS_2               2                97
  CLUS_3               2                21

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q GAIN MUTATED        1      1      2      0      1
  4Q GAIN WILD-TYPE     70     39     35     21     27
D8V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q GAIN MUTATED        0      1      1      2      0
  4Q GAIN WILD-TYPE     38     23     32     46     38
D8V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        0      3      1      1
  4Q GAIN WILD-TYPE     39     64     58     31
D8V3, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                64
  CLUS_3               1                58
  CLUS_4               1                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        2      2      1
  4Q GAIN WILD-TYPE     68     69     55
D8V4, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2                68
  CLUS_2               2                69
  CLUS_3               1                55
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        2      1      2
  4Q GAIN WILD-TYPE     63     64     65
D8V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2                63
  CLUS_2               1                64
  CLUS_3               2                65
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        1      2      2
  4Q GAIN WILD-TYPE     28     76     88
D8V6, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                28
  CLUS_2               2                76
  CLUS_3               2                88
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        2      1      2
  4Q GAIN WILD-TYPE     55     70     67
D8V7, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2                55
  CLUS_2               1                70
  CLUS_3               2                67
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        2      2      1
  4Q GAIN WILD-TYPE     73     97     22
D8V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2                73
  CLUS_2               2                97
  CLUS_3               1                22

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED        5      0     15      3      3
  5P GAIN WILD-TYPE     66     40     22     18     25
D9V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED        7      5      6      4      1
  5P GAIN WILD-TYPE     31     19     27     44     37
D9V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        4     15      3      4
  5P GAIN WILD-TYPE     35     52     56     28
D9V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               4                35
  CLUS_2              15                52
  CLUS_3               3                56
  CLUS_4               4                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        2     20      4
  5P GAIN WILD-TYPE     68     51     52
D9V4, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               2                68
  CLUS_2              20                51
  CLUS_3               4                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       13      8      5
  5P GAIN WILD-TYPE     52     57     62
D9V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              13                52
  CLUS_2               8                57
  CLUS_3               5                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        7      9     10
  5P GAIN WILD-TYPE     22     69     80
D9V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               7                22
  CLUS_2               9                69
  CLUS_3              10                80
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       13      8      5
  5P GAIN WILD-TYPE     44     63     64
D9V7, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              13                44
  CLUS_2               8                63
  CLUS_3               5                64
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       10     11      5
  5P GAIN WILD-TYPE     65     88     18
D9V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              10                65
  CLUS_2              11                88
  CLUS_3               5                18

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED        6      0     14      3      3
  5Q GAIN WILD-TYPE     65     40     23     18     25
D10V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED        7      5      5      5      1
  5Q GAIN WILD-TYPE     31     19     28     43     37
D10V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        5     14      3      4
  5Q GAIN WILD-TYPE     34     53     56     28
D10V3, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               5                34
  CLUS_2              14                53
  CLUS_3               3                56
  CLUS_4               4                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        2     20      4
  5Q GAIN WILD-TYPE     68     51     52
D10V4, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               2                68
  CLUS_2              20                51
  CLUS_3               4                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       13      8      5
  5Q GAIN WILD-TYPE     52     57     62
D10V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              13                52
  CLUS_2               8                57
  CLUS_3               5                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        6      9     11
  5Q GAIN WILD-TYPE     23     69     79
D10V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               6                23
  CLUS_2               9                69
  CLUS_3              11                79
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       12      8      6
  5Q GAIN WILD-TYPE     45     63     63
D10V7, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              12                45
  CLUS_2               8                63
  CLUS_3               6                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       10     12      4
  5Q GAIN WILD-TYPE     65     87     19
D10V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              10                65
  CLUS_2              12                87
  CLUS_3               4                19

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED        2      1      4      0      1
  6P GAIN WILD-TYPE     69     39     33     21     27
D11V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED        0      4      2      0      1
  6P GAIN WILD-TYPE     38     20     31     48     37
D11V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        0      7      1      0
  6P GAIN WILD-TYPE     39     60     58     32
D11V3, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               0                39
  CLUS_2               7                60
  CLUS_3               1                58
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        1      5      2
  6P GAIN WILD-TYPE     69     66     54
D11V4, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               1                69
  CLUS_2               5                66
  CLUS_3               2                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        0      5      3
  6P GAIN WILD-TYPE     65     60     64
D11V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               0                65
  CLUS_2               5                60
  CLUS_3               3                64
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        1      5      2
  6P GAIN WILD-TYPE     28     73     88
D11V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               1                28
  CLUS_2               5                73
  CLUS_3               2                88
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        1      5      2
  6P GAIN WILD-TYPE     56     66     67
D11V7, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               1                56
  CLUS_2               5                66
  CLUS_3               2                67
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        5      1      2
  6P GAIN WILD-TYPE     70     98     21
D11V8, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               5                70
  CLUS_2               1                98
  CLUS_3               2                21

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED        0      1      4      0      1
  6Q GAIN WILD-TYPE     71     39     33     21     27
D12V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED        0      4      0      0      1
  6Q GAIN WILD-TYPE     38     20     33     48     37
D12V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        0      5      1      0
  6Q GAIN WILD-TYPE     39     62     58     32
D12V3, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               0                39
  CLUS_2               5                62
  CLUS_3               1                58
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        1      3      2
  6Q GAIN WILD-TYPE     69     68     54
D12V4, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               1                69
  CLUS_2               3                68
  CLUS_3               2                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        0      4      2
  6Q GAIN WILD-TYPE     65     61     65
D12V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               0                65
  CLUS_2               4                61
  CLUS_3               2                65
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        1      3      2
  6Q GAIN WILD-TYPE     28     75     88
D12V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               1                28
  CLUS_2               3                75
  CLUS_3               2                88
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        0      4      2
  6Q GAIN WILD-TYPE     57     67     67
D12V7, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               0                57
  CLUS_2               4                67
  CLUS_3               2                67
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        4      1      1
  6Q GAIN WILD-TYPE     71     98     22
D12V8, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               4                71
  CLUS_2               1                98
  CLUS_3               1                22

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED       23     40     11     20     23
  7P GAIN WILD-TYPE     48      0     26      1      5
D13V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED       18      9     11     39     30
  7P GAIN WILD-TYPE     20     15     22      9      8
D13V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       21     17     53     26
  7P GAIN WILD-TYPE     18     50      6      6
D13V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              21                18
  CLUS_2              17                50
  CLUS_3              53                 6
  CLUS_4              26                 6
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       65     27     25
  7P GAIN WILD-TYPE      5     44     31
D13V4, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              65                 5
  CLUS_2              27                44
  CLUS_3              25                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       33     39     45
  7P GAIN WILD-TYPE     32     26     22
D13V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              33                32
  CLUS_2              39                26
  CLUS_3              45                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       15     45     57
  7P GAIN WILD-TYPE     14     33     33
D13V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              15                14
  CLUS_2              45                33
  CLUS_3              57                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       28     42     47
  7P GAIN WILD-TYPE     29     29     22
D13V7, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              28                29
  CLUS_2              42                29
  CLUS_3              47                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       44     67      6
  7P GAIN WILD-TYPE     31     32     17
D13V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              44                31
  CLUS_2              67                32
  CLUS_3               6                17

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED       23     40     12     20     23
  7Q GAIN WILD-TYPE     48      0     25      1      5
D14V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED       18      9     12     39     30
  7Q GAIN WILD-TYPE     20     15     21      9      8
D14V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       21     18     53     26
  7Q GAIN WILD-TYPE     18     49      6      6
D14V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              21                18
  CLUS_2              18                49
  CLUS_3              53                 6
  CLUS_4              26                 6
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       65     28     25
  7Q GAIN WILD-TYPE      5     43     31
D14V4, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              65                 5
  CLUS_2              28                43
  CLUS_3              25                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       34     39     45
  7Q GAIN WILD-TYPE     31     26     22
D14V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              34                31
  CLUS_2              39                26
  CLUS_3              45                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       16     45     57
  7Q GAIN WILD-TYPE     13     33     33
D14V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              16                13
  CLUS_2              45                33
  CLUS_3              57                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       29     42     47
  7Q GAIN WILD-TYPE     28     29     22
D14V7, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              29                28
  CLUS_2              42                29
  CLUS_3              47                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       44     67      7
  7Q GAIN WILD-TYPE     31     32     16
D14V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              44                31
  CLUS_2              67                32
  CLUS_3               7                16

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED        6      1      2      1      4
  8P GAIN WILD-TYPE     65     39     35     20     24
D15V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED        4      4      2      3      0
  8P GAIN WILD-TYPE     34     20     31     45     38
D15V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        1     10      3      0
  8P GAIN WILD-TYPE     38     57     56     32
D15V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               1                38
  CLUS_2              10                57
  CLUS_3               3                56
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        3      8      3
  8P GAIN WILD-TYPE     67     63     53
D15V4, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               3                67
  CLUS_2               8                63
  CLUS_3               3                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        2      7      5
  8P GAIN WILD-TYPE     63     58     62
D15V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               2                63
  CLUS_2               7                58
  CLUS_3               5                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        1      9      4
  8P GAIN WILD-TYPE     28     69     86
D15V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               1                28
  CLUS_2               9                69
  CLUS_3               4                86
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        3      7      4
  8P GAIN WILD-TYPE     54     64     65
D15V7, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               3                54
  CLUS_2               7                64
  CLUS_3               4                65
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        9      4      1
  8P GAIN WILD-TYPE     66     95     22
D15V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               9                66
  CLUS_2               4                95
  CLUS_3               1                22

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED        5      1      6      1      4
  8Q GAIN WILD-TYPE     66     39     31     20     24
D16V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED        3      7      2      3      0
  8Q GAIN WILD-TYPE     35     17     31     45     38
D16V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        1     13      3      0
  8Q GAIN WILD-TYPE     38     54     56     32
D16V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               1                38
  CLUS_2              13                54
  CLUS_3               3                56
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        3     10      4
  8Q GAIN WILD-TYPE     67     61     52
D16V4, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               3                67
  CLUS_2              10                61
  CLUS_3               4                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        2     10      5
  8Q GAIN WILD-TYPE     63     55     62
D16V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               2                63
  CLUS_2              10                55
  CLUS_3               5                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        2     11      4
  8Q GAIN WILD-TYPE     27     67     86
D16V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               2                27
  CLUS_2              11                67
  CLUS_3               4                86
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        3     10      4
  8Q GAIN WILD-TYPE     54     61     65
D16V7, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               3                54
  CLUS_2              10                61
  CLUS_3               4                65
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       11      4      2
  8Q GAIN WILD-TYPE     64     95     21
D16V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              11                64
  CLUS_2               4                95
  CLUS_3               2                21

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED        2      0      0      0      1
  9P GAIN WILD-TYPE     69     40     37     21     27
D17V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED        0      1      1      0      0
  9P GAIN WILD-TYPE     38     23     32     48     38
D17V2, multiclass
[1] "Remove cluster labels:" "9P GAIN MUTATED"       
clus
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                2               179 
       TCGA-A4-7286        TCGA-A4-7287        TCGA-A4-7288        TCGA-A4-7583 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-A4-7584        TCGA-A4-7585        TCGA-A4-7732        TCGA-A4-7734 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-A4-7828        TCGA-A4-7915        TCGA-A4-7996        TCGA-A4-7997 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-A4-8098        TCGA-A4-8310        TCGA-A4-8311        TCGA-A4-8312 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-A4-8515        TCGA-A4-8516        TCGA-A4-8517        TCGA-A4-8518 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-A4-8630        TCGA-A4-A48D        TCGA-A4-A4ZT        TCGA-A4-A57E 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-A4-A5DU        TCGA-A4-A5XZ        TCGA-A4-A5Y0        TCGA-A4-A5Y1 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-A4-A6HP        TCGA-A4-A772        TCGA-A4-A7UZ        TCGA-AL-7173 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-AL-A5DJ        TCGA-AT-A5NU        TCGA-B1-5398        TCGA-B1-7332 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-B1-A47M        TCGA-B1-A47N        TCGA-B1-A47O        TCGA-B1-A654 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-B1-A655        TCGA-B1-A656        TCGA-B1-A657        TCGA-B3-8121 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-B3-A6W5        TCGA-B9-5155        TCGA-B9-5156        TCGA-B9-7268 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-B9-A44B        TCGA-B9-A5W7        TCGA-B9-A5W8        TCGA-B9-A5W9 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-B9-A69E        TCGA-BQ-5875        TCGA-BQ-5876        TCGA-BQ-5877 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BQ-5878        TCGA-BQ-5879        TCGA-BQ-5880        TCGA-BQ-5881 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BQ-5882        TCGA-BQ-5883        TCGA-BQ-5884        TCGA-BQ-5885 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BQ-5886        TCGA-BQ-5887        TCGA-BQ-5888        TCGA-BQ-5889 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BQ-5890        TCGA-BQ-5891        TCGA-BQ-5892        TCGA-BQ-5893 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BQ-5894        TCGA-BQ-7044        TCGA-BQ-7045        TCGA-BQ-7046 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BQ-7048        TCGA-BQ-7049        TCGA-BQ-7050        TCGA-BQ-7051 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BQ-7053        TCGA-BQ-7055        TCGA-BQ-7056        TCGA-BQ-7059 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BQ-7060        TCGA-BQ-7061        TCGA-BQ-7062        TCGA-DW-5560 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DW-5561        TCGA-DW-7834        TCGA-DW-7836        TCGA-DW-7837 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DW-7838        TCGA-DW-7839        TCGA-DW-7840        TCGA-DW-7841 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DW-7842        TCGA-DW-7963        TCGA-DZ-6131        TCGA-DZ-6132 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DZ-6133        TCGA-DZ-6134        TCGA-DZ-6135        TCGA-EV-5901 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EV-5902        TCGA-EV-5903        TCGA-F9-A4JJ        TCGA-F9-A7VF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-G7-6789        TCGA-G7-6790        TCGA-G7-6792        TCGA-G7-6793 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-G7-6795        TCGA-G7-6796        TCGA-G7-6797        TCGA-G7-7501 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-G7-7502        TCGA-G7-A4TM        TCGA-GL-6846        TCGA-GL-7773 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GL-8500        TCGA-GL-A4EM        TCGA-GL-A59R        TCGA-GL-A59T 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HE-7128        TCGA-HE-7129        TCGA-HE-7130        TCGA-HE-A5NF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HE-A5NH        TCGA-HE-A5NI        TCGA-HE-A5NJ        TCGA-HE-A5NK 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HE-A5NL        TCGA-IA-A40U        TCGA-IA-A40X        TCGA-IA-A40Y 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IA-A83S        TCGA-IA-A83T        TCGA-IA-A83V        TCGA-IA-A83W 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IZ-8195        TCGA-IZ-8196        TCGA-IZ-A6M8        TCGA-IZ-A6M9 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-J7-6720        TCGA-J7-8537        TCGA-KV-A6GD        TCGA-KV-A6GE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-KV-A74V        TCGA-MH-A55W        TCGA-MH-A55Z        TCGA-MH-A560 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MH-A561        TCGA-MH-A562        TCGA-MH-A854        TCGA-MH-A855 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MH-A856        TCGA-MH-A857        TCGA-O9-A75Z        TCGA-P4-A5E6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-P4-A5E7        TCGA-P4-A5E8        TCGA-P4-A5EA        TCGA-P4-A5EB 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-P4-A5ED        TCGA-PJ-A5Z8        TCGA-PJ-A5Z9        TCGA-Q2-A5QZ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-SX-A71R        TCGA-SX-A71S        TCGA-SX-A71U        TCGA-SX-A71V 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-SX-A7SL        TCGA-SX-A7SM        TCGA-SX-A7SN        TCGA-SX-A7SO 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-SX-A7SP        TCGA-V9-A7HT        TCGA-Y8-A898 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        0      3      0      0
  9P GAIN WILD-TYPE     39     64     59     32
D17V3, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                64
  CLUS_3               0                59
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        0      1      2
  9P GAIN WILD-TYPE     70     70     54
D17V4, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               0                70
  CLUS_2               1                70
  CLUS_3               2                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        1      1      1
  9P GAIN WILD-TYPE     64     64     66
D17V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               1                64
  CLUS_2               1                64
  CLUS_3               1                66
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        1      2      0
  9P GAIN WILD-TYPE     28     76     90
D17V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               1                28
  CLUS_2               2                76
  CLUS_3               0                90
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        1      2      0
  9P GAIN WILD-TYPE     56     69     69
D17V7, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               1                56
  CLUS_2               2                69
  CLUS_3               0                69
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        2      0      1
  9P GAIN WILD-TYPE     73     99     22
D17V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                73
  CLUS_2               0                99
  CLUS_3               1                22

Clustering(18) Variable = 10P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        0      1      3      1      0
  10P GAIN WILD-TYPE     71     39     34     20     28
D18V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        0      1      1      1      0
  10P GAIN WILD-TYPE     38     23     32     47     38
D18V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        0      3      2      0
  10P GAIN WILD-TYPE     39     64     57     32
D18V3, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                3                 64
  CLUS_3                2                 57
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        2      2      1
  10P GAIN WILD-TYPE     68     69     55
D18V4, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                2                 68
  CLUS_2                2                 69
  CLUS_3                1                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        2      0      3
  10P GAIN WILD-TYPE     63     65     64
D18V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                2                 63
  CLUS_2                0                 65
  CLUS_3                3                 64
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        0      1      4
  10P GAIN WILD-TYPE     29     77     86
D18V6, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                 29
  CLUS_2                1                 77
  CLUS_3                4                 86
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        2      0      3
  10P GAIN WILD-TYPE     55     71     66
D18V7, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                2                 55
  CLUS_2                0                 71
  CLUS_3                3                 66
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        1      3      1
  10P GAIN WILD-TYPE     74     96     22
D18V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                 74
  CLUS_2                3                 96
  CLUS_3                1                 22

Clustering(19) Variable = 10Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q GAIN MUTATED        0      1      3      1      0
  10Q GAIN WILD-TYPE     71     39     34     20     28
D19V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q GAIN MUTATED        0      1      1      1      0
  10Q GAIN WILD-TYPE     38     23     32     47     38
D19V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        0      3      2      0
  10Q GAIN WILD-TYPE     39     64     57     32
D19V3, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                3                 64
  CLUS_3                2                 57
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        2      2      1
  10Q GAIN WILD-TYPE     68     69     55
D19V4, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                2                 68
  CLUS_2                2                 69
  CLUS_3                1                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        2      0      3
  10Q GAIN WILD-TYPE     63     65     64
D19V5, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                2                 63
  CLUS_2                0                 65
  CLUS_3                3                 64
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        0      1      4
  10Q GAIN WILD-TYPE     29     77     86
D19V6, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                0                 29
  CLUS_2                1                 77
  CLUS_3                4                 86
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        2      0      3
  10Q GAIN WILD-TYPE     55     71     66
D19V7, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                2                 55
  CLUS_2                0                 71
  CLUS_3                3                 66
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        1      3      1
  10Q GAIN WILD-TYPE     74     96     22
D19V8, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                1                 74
  CLUS_2                3                 96
  CLUS_3                1                 22

Clustering(20) Variable = 11P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        1      1      5      0      3
  11P GAIN WILD-TYPE     70     39     32     21     25
D20V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        1      4      4      0      0
  11P GAIN WILD-TYPE     37     20     29     48     38
D20V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        1      7      1      1
  11P GAIN WILD-TYPE     38     60     58     31
D20V3, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                7                 60
  CLUS_3                1                 58
  CLUS_4                1                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        0      6      4
  11P GAIN WILD-TYPE     70     65     52
D20V4, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                0                 70
  CLUS_2                6                 65
  CLUS_3                4                 52
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        5      3      2
  11P GAIN WILD-TYPE     60     62     65
D20V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                5                 60
  CLUS_2                3                 62
  CLUS_3                2                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        2      4      4
  11P GAIN WILD-TYPE     27     74     86
D20V6, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                 27
  CLUS_2                4                 74
  CLUS_3                4                 86
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        5      3      2
  11P GAIN WILD-TYPE     52     68     67
D20V7, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                5                 52
  CLUS_2                3                 68
  CLUS_3                2                 67
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        4      4      2
  11P GAIN WILD-TYPE     71     95     21
D20V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                4                 71
  CLUS_2                4                 95
  CLUS_3                2                 21

Clustering(21) Variable = 11Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        0      0      6      0      2
  11Q GAIN WILD-TYPE     71     40     31     21     26
D21V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        0      4      3      0      0
  11Q GAIN WILD-TYPE     38     20     30     48     38
D21V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        1      6      1      0
  11Q GAIN WILD-TYPE     38     61     58     32
D21V3, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                6                 61
  CLUS_3                1                 58
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        0      6      2
  11Q GAIN WILD-TYPE     70     65     54
D21V4, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                 70
  CLUS_2                6                 65
  CLUS_3                2                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        4      3      1
  11Q GAIN WILD-TYPE     61     62     66
D21V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                4                 61
  CLUS_2                3                 62
  CLUS_3                1                 66
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        1      3      4
  11Q GAIN WILD-TYPE     28     75     86
D21V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                3                 75
  CLUS_3                4                 86
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        4      3      1
  11Q GAIN WILD-TYPE     53     68     68
D21V7, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                4                 53
  CLUS_2                3                 68
  CLUS_3                1                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        4      3      1
  11Q GAIN WILD-TYPE     71     96     22
D21V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                4                 71
  CLUS_2                3                 96
  CLUS_3                1                 22

Clustering(22) Variable = 12P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED       21     20     10      9     20
  12P GAIN WILD-TYPE     50     20     27     12      8
D22V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED       17      7      9     25     16
  12P GAIN WILD-TYPE     21     17     24     23     22
D22V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       15     19     30     16
  12P GAIN WILD-TYPE     24     48     29     16
D22V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               15                 24
  CLUS_2               19                 48
  CLUS_3               30                 29
  CLUS_4               16                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       40     25     15
  12P GAIN WILD-TYPE     30     46     41
D22V4, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               40                 30
  CLUS_2               25                 46
  CLUS_3               15                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       31     21     28
  12P GAIN WILD-TYPE     34     44     39
D22V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               31                 34
  CLUS_2               21                 44
  CLUS_3               28                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       12     23     45
  12P GAIN WILD-TYPE     17     55     45
D22V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               12                 17
  CLUS_2               23                 55
  CLUS_3               45                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       20     25     35
  12P GAIN WILD-TYPE     37     46     34
D22V7, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               20                 37
  CLUS_2               25                 46
  CLUS_3               35                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       23     48      9
  12P GAIN WILD-TYPE     52     51     14
D22V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               23                 52
  CLUS_2               48                 51
  CLUS_3                9                 14

Clustering(23) Variable = 12Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED       21     20     10      9     20
  12Q GAIN WILD-TYPE     50     20     27     12      8
D23V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED       17      7      9     25     16
  12Q GAIN WILD-TYPE     21     17     24     23     22
D23V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED       15     19     30     16
  12Q GAIN WILD-TYPE     24     48     29     16
D23V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               15                 24
  CLUS_2               19                 48
  CLUS_3               30                 29
  CLUS_4               16                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       40     25     15
  12Q GAIN WILD-TYPE     30     46     41
D23V4, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               40                 30
  CLUS_2               25                 46
  CLUS_3               15                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       31     21     28
  12Q GAIN WILD-TYPE     34     44     39
D23V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               31                 34
  CLUS_2               21                 44
  CLUS_3               28                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       12     23     45
  12Q GAIN WILD-TYPE     17     55     45
D23V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               12                 17
  CLUS_2               23                 55
  CLUS_3               45                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       20     25     35
  12Q GAIN WILD-TYPE     37     46     34
D23V7, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               20                 37
  CLUS_2               25                 46
  CLUS_3               35                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       23     48      9
  12Q GAIN WILD-TYPE     52     51     14
D23V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               23                 52
  CLUS_2               48                 51
  CLUS_3                9                 14

Clustering(24) Variable = 13Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q GAIN MUTATED        5      3      6      2      6
  13Q GAIN WILD-TYPE     66     37     31     19     22
D24V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q GAIN MUTATED        6      3      1      6      4
  13Q GAIN WILD-TYPE     32     21     32     42     34
D24V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        7      4      8      3
  13Q GAIN WILD-TYPE     32     63     51     29
D24V3, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                7                 32
  CLUS_2                4                 63
  CLUS_3                8                 51
  CLUS_4                3                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        8      9      5
  13Q GAIN WILD-TYPE     62     62     51
D24V4, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                8                 62
  CLUS_2                9                 62
  CLUS_3                5                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        6      7      9
  13Q GAIN WILD-TYPE     59     58     58
D24V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                6                 59
  CLUS_2                7                 58
  CLUS_3                9                 58
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        3      9     10
  13Q GAIN WILD-TYPE     26     69     80
D24V6, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                3                 26
  CLUS_2                9                 69
  CLUS_3               10                 80
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        8      7      7
  13Q GAIN WILD-TYPE     49     64     62
D24V7, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                8                 49
  CLUS_2                7                 64
  CLUS_3                7                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        7     12      3
  13Q GAIN WILD-TYPE     68     87     20
D24V8, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                7                 68
  CLUS_2               12                 87
  CLUS_3                3                 20

Clustering(25) Variable = 14Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED        1      0      1      0      1
  14Q GAIN WILD-TYPE     70     40     36     21     27
D25V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED        1      2      0      0      0
  14Q GAIN WILD-TYPE     37     22     33     48     38
D25V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        0      3      0      0
  14Q GAIN WILD-TYPE     39     64     59     32
D25V3, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                3                 64
  CLUS_3                0                 59
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        0      1      2
  14Q GAIN WILD-TYPE     70     70     54
D25V4, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                0                 70
  CLUS_2                1                 70
  CLUS_3                2                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        1      1      1
  14Q GAIN WILD-TYPE     64     64     66
D25V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                1                 64
  CLUS_2                1                 64
  CLUS_3                1                 66
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        1      2      0
  14Q GAIN WILD-TYPE     28     76     90
D25V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                2                 76
  CLUS_3                0                 90
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        1      1      1
  14Q GAIN WILD-TYPE     56     70     68
D25V7, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                1                 56
  CLUS_2                1                 70
  CLUS_3                1                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        2      0      1
  14Q GAIN WILD-TYPE     73     99     22
D25V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                2                 73
  CLUS_2                0                 99
  CLUS_3                1                 22

Clustering(26) Variable = 15Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        0      0      3      0      2
  15Q GAIN WILD-TYPE     71     40     34     21     26
D26V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        0      2      2      1      0
  15Q GAIN WILD-TYPE     38     22     31     47     38
D26V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        2      3      0      0
  15Q GAIN WILD-TYPE     37     64     59     32
D26V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                 37
  CLUS_2                3                 64
  CLUS_3                0                 59
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        1      4      0
  15Q GAIN WILD-TYPE     69     67     56
D26V4, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                1                 69
  CLUS_2                4                 67
  CLUS_3                0                 56
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        3      1      1
  15Q GAIN WILD-TYPE     62     64     66
D26V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 62
  CLUS_2                1                 64
  CLUS_3                1                 66
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        1      1      3
  15Q GAIN WILD-TYPE     28     77     87
D26V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                1                 77
  CLUS_3                3                 87
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        3      1      1
  15Q GAIN WILD-TYPE     54     70     68
D26V7, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 54
  CLUS_2                1                 70
  CLUS_3                1                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        2      2      1
  15Q GAIN WILD-TYPE     73     97     22
D26V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                 73
  CLUS_2                2                 97
  CLUS_3                1                 22

Clustering(27) Variable = 16P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED       30     17     13     21     24
  16P GAIN WILD-TYPE     41     23     24      0      4
D27V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED       20      8     16     44     10
  16P GAIN WILD-TYPE     18     16     17      4     28
D27V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED       32     20     36     17
  16P GAIN WILD-TYPE      7     47     23     15
D27V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               32                  7
  CLUS_2               20                 47
  CLUS_3               36                 23
  CLUS_4               17                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       54     40     11
  16P GAIN WILD-TYPE     16     31     45
D27V4, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               54                 16
  CLUS_2               40                 31
  CLUS_3               11                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       38     25     42
  16P GAIN WILD-TYPE     27     40     25
D27V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               38                 27
  CLUS_2               25                 40
  CLUS_3               42                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       17     32     56
  16P GAIN WILD-TYPE     12     46     34
D27V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               17                 12
  CLUS_2               32                 46
  CLUS_3               56                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       36     25     44
  16P GAIN WILD-TYPE     21     46     25
D27V7, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               36                 21
  CLUS_2               25                 46
  CLUS_3               44                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       28     65     12
  16P GAIN WILD-TYPE     47     34     11
D27V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               28                 47
  CLUS_2               65                 34
  CLUS_3               12                 11

Clustering(28) Variable = 16Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED       30     16     10     21     24
  16Q GAIN WILD-TYPE     41     24     27      0      4
D28V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED       20      7     15     43     10
  16Q GAIN WILD-TYPE     18     17     18      5     28
D28V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED       32     17     35     17
  16Q GAIN WILD-TYPE      7     50     24     15
D28V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               32                  7
  CLUS_2               17                 50
  CLUS_3               35                 24
  CLUS_4               17                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       53     37     11
  16Q GAIN WILD-TYPE     17     34     45
D28V4, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               53                 17
  CLUS_2               37                 34
  CLUS_3               11                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       36     22     43
  16Q GAIN WILD-TYPE     29     43     24
D28V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               36                 29
  CLUS_2               22                 43
  CLUS_3               43                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       14     31     56
  16Q GAIN WILD-TYPE     15     47     34
D28V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               14                 15
  CLUS_2               31                 47
  CLUS_3               56                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       35     22     44
  16Q GAIN WILD-TYPE     22     49     25
D28V7, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               35                 22
  CLUS_2               22                 49
  CLUS_3               44                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       27     65      9
  16Q GAIN WILD-TYPE     48     34     14
D28V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               27                 48
  CLUS_2               65                 34
  CLUS_3                9                 14

Clustering(29) Variable = 17P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED       26     39      9     19     25
  17P GAIN WILD-TYPE     45      1     28      2      3
D29V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED       17      9     11     39     32
  17P GAIN WILD-TYPE     21     15     22      9      6
D29V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED       27     16     52     23
  17P GAIN WILD-TYPE     12     51      7      9
D29V3, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               27                 12
  CLUS_2               16                 51
  CLUS_3               52                  7
  CLUS_4               23                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       64     32     22
  17P GAIN WILD-TYPE      6     39     34
D29V4, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               64                  6
  CLUS_2               32                 39
  CLUS_3               22                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       34     37     47
  17P GAIN WILD-TYPE     31     28     20
D29V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               34                 31
  CLUS_2               37                 28
  CLUS_3               47                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       13     47     58
  17P GAIN WILD-TYPE     16     31     32
D29V6, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               13                 16
  CLUS_2               47                 31
  CLUS_3               58                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       29     39     50
  17P GAIN WILD-TYPE     28     32     19
D29V7, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               29                 28
  CLUS_2               39                 32
  CLUS_3               50                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       43     68      7
  17P GAIN WILD-TYPE     32     31     16
D29V8, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               43                 32
  CLUS_2               68                 31
  CLUS_3                7                 16

Clustering(30) Variable = 17Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED       33     39     15     19     27
  17Q GAIN WILD-TYPE     38      1     22      2      1
D30V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED       20     12     19     39     32
  17Q GAIN WILD-TYPE     18     12     14      9      6
D30V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED       30     27     52     24
  17Q GAIN WILD-TYPE      9     40      7      8
D30V3, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               30                  9
  CLUS_2               27                 40
  CLUS_3               52                  7
  CLUS_4               24                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       64     42     27
  17Q GAIN WILD-TYPE      6     29     29
D30V4, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               64                  6
  CLUS_2               42                 29
  CLUS_3               27                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       41     43     49
  17Q GAIN WILD-TYPE     24     22     18
D30V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               41                 24
  CLUS_2               43                 22
  CLUS_3               49                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       16     54     63
  17Q GAIN WILD-TYPE     13     24     27
D30V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               16                 13
  CLUS_2               54                 24
  CLUS_3               63                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       36     46     51
  17Q GAIN WILD-TYPE     21     25     18
D30V7, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               36                 21
  CLUS_2               46                 25
  CLUS_3               51                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       50     72     11
  17Q GAIN WILD-TYPE     25     27     12
D30V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               50                 25
  CLUS_2               72                 27
  CLUS_3               11                 12

Clustering(31) Variable = 18P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED        1      2      3      2      1
  18P GAIN WILD-TYPE     70     38     34     19     27
D31V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED        0      2      0      3      1
  18P GAIN WILD-TYPE     38     22     33     45     37
D31V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        2      4      3      0
  18P GAIN WILD-TYPE     37     63     56     32
D31V3, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                2                 37
  CLUS_2                4                 63
  CLUS_3                3                 56
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        4      2      3
  18P GAIN WILD-TYPE     66     69     53
D31V4, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                4                 66
  CLUS_2                2                 69
  CLUS_3                3                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        1      5      3
  18P GAIN WILD-TYPE     64     60     64
D31V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                 64
  CLUS_2                5                 60
  CLUS_3                3                 64
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        3      6      0
  18P GAIN WILD-TYPE     26     72     90
D31V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                3                 26
  CLUS_2                6                 72
  CLUS_3                0                 90
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        1      6      2
  18P GAIN WILD-TYPE     56     65     67
D31V7, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                 56
  CLUS_2                6                 65
  CLUS_3                2                 67
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        4      2      3
  18P GAIN WILD-TYPE     71     97     20
D31V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                4                 71
  CLUS_2                2                 97
  CLUS_3                3                 20

Clustering(32) Variable = 18Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        1      1      0      2      1
  18Q GAIN WILD-TYPE     70     39     37     19     27
D32V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        0      0      0      2      1
  18Q GAIN WILD-TYPE     38     24     33     46     37
D32V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        2      1      2      0
  18Q GAIN WILD-TYPE     37     66     57     32
D32V3, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                2                 37
  CLUS_2                1                 66
  CLUS_3                2                 57
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        3      0      2
  18Q GAIN WILD-TYPE     67     71     54
D32V4, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                3                 67
  CLUS_2                0                 71
  CLUS_3                2                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        1      2      2
  18Q GAIN WILD-TYPE     64     63     65
D32V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                1                 64
  CLUS_2                2                 63
  CLUS_3                2                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        1      4      0
  18Q GAIN WILD-TYPE     28     74     90
D32V6, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                4                 74
  CLUS_3                0                 90
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        1      3      1
  18Q GAIN WILD-TYPE     56     68     68
D32V7, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                1                 56
  CLUS_2                3                 68
  CLUS_3                1                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        2      2      1
  18Q GAIN WILD-TYPE     73     97     22
D32V8, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                2                 73
  CLUS_2                2                 97
  CLUS_3                1                 22

Clustering(33) Variable = 19P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED        0      0      2      0      1
  19P GAIN WILD-TYPE     71     40     35     21     27
D33V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED        1      1      1      0      0
  19P GAIN WILD-TYPE     37     23     32     48     38
D33V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED        0      3      0      0
  19P GAIN WILD-TYPE     39     64     59     32
D33V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                3                 64
  CLUS_3                0                 59
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        0      2      1
  19P GAIN WILD-TYPE     70     69     55
D33V4, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                0                 70
  CLUS_2                2                 69
  CLUS_3                1                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        2      1      0
  19P GAIN WILD-TYPE     63     64     67
D33V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                2                 63
  CLUS_2                1                 64
  CLUS_3                0                 67
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        1      1      1
  19P GAIN WILD-TYPE     28     77     89
D33V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                1                 77
  CLUS_3                1                 89
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        2      1      0
  19P GAIN WILD-TYPE     55     70     69
D33V7, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                2                 55
  CLUS_2                1                 70
  CLUS_3                0                 69
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        1      1      1
  19P GAIN WILD-TYPE     74     98     22
D33V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                1                 74
  CLUS_2                1                 98
  CLUS_3                1                 22

Clustering(34) Variable = 19Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED        0      0      2      0      1
  19Q GAIN WILD-TYPE     71     40     35     21     27
D34V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED        1      1      1      0      0
  19Q GAIN WILD-TYPE     37     23     32     48     38
D34V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED        0      3      0      0
  19Q GAIN WILD-TYPE     39     64     59     32
D34V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                3                 64
  CLUS_3                0                 59
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        0      2      1
  19Q GAIN WILD-TYPE     70     69     55
D34V4, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                0                 70
  CLUS_2                2                 69
  CLUS_3                1                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        2      1      0
  19Q GAIN WILD-TYPE     63     64     67
D34V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                2                 63
  CLUS_2                1                 64
  CLUS_3                0                 67
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        1      1      1
  19Q GAIN WILD-TYPE     28     77     89
D34V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                1                 77
  CLUS_3                1                 89
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        2      1      0
  19Q GAIN WILD-TYPE     55     70     69
D34V7, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                2                 55
  CLUS_2                1                 70
  CLUS_3                0                 69
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        1      1      1
  19Q GAIN WILD-TYPE     74     98     22
D34V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                1                 74
  CLUS_2                1                 98
  CLUS_3                1                 22

Clustering(35) Variable = 20P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED       13     15     12      8     18
  20P GAIN WILD-TYPE     58     25     25     13     10
D35V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED        8     10      6     24     11
  20P GAIN WILD-TYPE     30     14     27     24     27
D35V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       14     15     28      9
  20P GAIN WILD-TYPE     25     52     31     23
D35V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               14                 25
  CLUS_2               15                 52
  CLUS_3               28                 31
  CLUS_4                9                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       31     19     16
  20P GAIN WILD-TYPE     39     52     40
D35V4, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               31                 39
  CLUS_2               19                 52
  CLUS_3               16                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       16     20     30
  20P GAIN WILD-TYPE     49     45     37
D35V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               16                 49
  CLUS_2               20                 45
  CLUS_3               30                 37
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        9     24     33
  20P GAIN WILD-TYPE     20     54     57
D35V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                9                 20
  CLUS_2               24                 54
  CLUS_3               33                 57
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       15     22     29
  20P GAIN WILD-TYPE     42     49     40
D35V7, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               15                 42
  CLUS_2               22                 49
  CLUS_3               29                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       21     38      7
  20P GAIN WILD-TYPE     54     61     16
D35V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               21                 54
  CLUS_2               38                 61
  CLUS_3                7                 16

Clustering(36) Variable = 20Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED       15     15     12      8     18
  20Q GAIN WILD-TYPE     56     25     25     13     10
D36V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED        8     11      6     24     11
  20Q GAIN WILD-TYPE     30     13     27     24     27
D36V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       14     17     28      9
  20Q GAIN WILD-TYPE     25     50     31     23
D36V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               14                 25
  CLUS_2               17                 50
  CLUS_3               28                 31
  CLUS_4                9                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       31     19     18
  20Q GAIN WILD-TYPE     39     52     38
D36V4, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               31                 39
  CLUS_2               19                 52
  CLUS_3               18                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       16     21     31
  20Q GAIN WILD-TYPE     49     44     36
D36V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               16                 49
  CLUS_2               21                 44
  CLUS_3               31                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        9     26     33
  20Q GAIN WILD-TYPE     20     52     57
D36V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                9                 20
  CLUS_2               26                 52
  CLUS_3               33                 57
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       15     24     29
  20Q GAIN WILD-TYPE     42     47     40
D36V7, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               15                 42
  CLUS_2               24                 47
  CLUS_3               29                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       23     38      7
  20Q GAIN WILD-TYPE     52     61     16
D36V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               23                 52
  CLUS_2               38                 61
  CLUS_3                7                 16

Clustering(37) Variable = 21Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q GAIN MUTATED        2      3      5      1      1
  21Q GAIN WILD-TYPE     69     37     32     20     27
D37V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q GAIN MUTATED        1      2      1      5      2
  21Q GAIN WILD-TYPE     37     22     32     43     36
D37V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        0      5      7      0
  21Q GAIN WILD-TYPE     39     62     52     32
D37V3, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                5                 62
  CLUS_3                7                 52
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        6      5      1
  21Q GAIN WILD-TYPE     64     66     55
D37V4, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                6                 64
  CLUS_2                5                 66
  CLUS_3                1                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        4      3      5
  21Q GAIN WILD-TYPE     61     62     62
D37V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                4                 61
  CLUS_2                3                 62
  CLUS_3                5                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        1      7      4
  21Q GAIN WILD-TYPE     28     71     86
D37V6, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                7                 71
  CLUS_3                4                 86
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        3      3      6
  21Q GAIN WILD-TYPE     54     68     63
D37V7, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                3                 54
  CLUS_2                3                 68
  CLUS_3                6                 63
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        6      5      1
  21Q GAIN WILD-TYPE     69     94     22
D37V8, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                6                 69
  CLUS_2                5                 94
  CLUS_3                1                 22

Clustering(38) Variable = 22Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED        0      0      1      1      1
  22Q GAIN WILD-TYPE     71     40     36     20     27
D38V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED        1      0      1      1      0
  22Q GAIN WILD-TYPE     37     24     32     47     38
D38V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        1      1      0      1
  22Q GAIN WILD-TYPE     38     66     59     31
D38V3, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                1                 66
  CLUS_3                0                 59
  CLUS_4                1                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        1      2      0
  22Q GAIN WILD-TYPE     69     69     56
D38V4, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                 69
  CLUS_2                2                 69
  CLUS_3                0                 56
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        3      0      0
  22Q GAIN WILD-TYPE     62     65     67
D38V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                 62
  CLUS_2                0                 65
  CLUS_3                0                 67
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        1      0      2
  22Q GAIN WILD-TYPE     28     78     88
D38V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                0                 78
  CLUS_3                2                 88
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        2      0      1
  22Q GAIN WILD-TYPE     55     71     68
D38V7, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                2                 55
  CLUS_2                0                 71
  CLUS_3                1                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        0      2      1
  22Q GAIN WILD-TYPE     75     97     22
D38V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                0                 75
  CLUS_2                2                 97
  CLUS_3                1                 22

Clustering(39) Variable = XQ GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED        5     15      3     18     22
  XQ GAIN WILD-TYPE     66     25     34      3      6
D39V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED        8      2      6     31      9
  XQ GAIN WILD-TYPE     30     22     27     17     29
D39V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED       18      6     31      8
  XQ GAIN WILD-TYPE     21     61     28     24
D39V3, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              18                21
  CLUS_2               6                61
  CLUS_3              31                28
  CLUS_4               8                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       42     16      5
  XQ GAIN WILD-TYPE     28     55     51
D39V4, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              42                28
  CLUS_2              16                55
  CLUS_3               5                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       22     12     29
  XQ GAIN WILD-TYPE     43     53     38
D39V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              22                43
  CLUS_2              12                53
  CLUS_3              29                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        9     18     36
  XQ GAIN WILD-TYPE     20     60     54
D39V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               9                20
  CLUS_2              18                60
  CLUS_3              36                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       18     12     33
  XQ GAIN WILD-TYPE     39     59     36
D39V7, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              18                39
  CLUS_2              12                59
  CLUS_3              33                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       16     43      4
  XQ GAIN WILD-TYPE     59     56     19
D39V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              16                59
  CLUS_2              43                56
  CLUS_3               4                19

Clustering(40) Variable = 1P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED        4      0     13      0      4
  1P LOSS WILD-TYPE     67     40     24     21     24
D40V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED        4      7      3      6      0
  1P LOSS WILD-TYPE     34     17     30     42     38
D40V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        3     14      4      0
  1P LOSS WILD-TYPE     36     53     55     32
D40V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               3                36
  CLUS_2              14                53
  CLUS_3               4                55
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        5      8      8
  1P LOSS WILD-TYPE     65     63     48
D40V4, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               5                65
  CLUS_2               8                63
  CLUS_3               8                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        7      7      7
  1P LOSS WILD-TYPE     58     58     60
D40V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               7                58
  CLUS_2               7                58
  CLUS_3               7                60
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        1      8     12
  1P LOSS WILD-TYPE     28     70     78
D40V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               1                28
  CLUS_2               8                70
  CLUS_3              12                78
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        6      8      7
  1P LOSS WILD-TYPE     51     63     62
D40V7, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               6                51
  CLUS_2               8                63
  CLUS_3               7                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        8     10      3
  1P LOSS WILD-TYPE     67     89     20
D40V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               8                67
  CLUS_2              10                89
  CLUS_3               3                20

Clustering(41) Variable = 1Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED        2      0      8      0      3
  1Q LOSS WILD-TYPE     69     40     29     21     25
D41V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED        4      2      1      5      0
  1Q LOSS WILD-TYPE     34     22     32     43     38
D41V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        4      5      4      0
  1Q LOSS WILD-TYPE     35     62     55     32
D41V3, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               4                35
  CLUS_2               5                62
  CLUS_3               4                55
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        5      3      5
  1Q LOSS WILD-TYPE     65     68     51
D41V4, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               5                65
  CLUS_2               3                68
  CLUS_3               5                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        4      3      6
  1Q LOSS WILD-TYPE     61     62     61
D41V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               4                61
  CLUS_2               3                62
  CLUS_3               6                61
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        0      4      9
  1Q LOSS WILD-TYPE     29     74     81
D41V6, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               0                29
  CLUS_2               4                74
  CLUS_3               9                81
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        3      4      6
  1Q LOSS WILD-TYPE     54     67     63
D41V7, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                54
  CLUS_2               4                67
  CLUS_3               6                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        4      9      0
  1Q LOSS WILD-TYPE     71     90     23
D41V8, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               4                71
  CLUS_2               9                90
  CLUS_3               0                23

Clustering(42) Variable = 3P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED        2      0      9      0      3
  3P LOSS WILD-TYPE     69     40     28     21     25
D42V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED        0      7      6      0      0
  3P LOSS WILD-TYPE     38     17     27     48     38
D42V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        1     13      0      0
  3P LOSS WILD-TYPE     38     54     59     32
D42V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               1                38
  CLUS_2              13                54
  CLUS_3               0                59
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        0     11      3
  3P LOSS WILD-TYPE     70     60     53
D42V4, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               0                70
  CLUS_2              11                60
  CLUS_3               3                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        6      6      2
  3P LOSS WILD-TYPE     59     59     65
D42V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               6                59
  CLUS_2               6                59
  CLUS_3               2                65
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        6      6      2
  3P LOSS WILD-TYPE     23     72     88
D42V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               6                23
  CLUS_2               6                72
  CLUS_3               2                88
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        7      6      1
  3P LOSS WILD-TYPE     50     65     68
D42V7, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               7                50
  CLUS_2               6                65
  CLUS_3               1                68
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        5      1      8
  3P LOSS WILD-TYPE     70     98     15
D42V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               5                70
  CLUS_2               1                98
  CLUS_3               8                15

Clustering(43) Variable = 3Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED        0      0      2      0      2
  3Q LOSS WILD-TYPE     71     40     35     21     26
D43V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED        0      3      1      0      0
  3Q LOSS WILD-TYPE     38     21     32     48     38
D43V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        0      4      0      0
  3Q LOSS WILD-TYPE     39     63     59     32
D43V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                39
  CLUS_2               4                63
  CLUS_3               0                59
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        0      1      3
  3Q LOSS WILD-TYPE     70     70     53
D43V4, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                70
  CLUS_2               1                70
  CLUS_3               3                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        1      3      0
  3Q LOSS WILD-TYPE     64     62     67
D43V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               1                64
  CLUS_2               3                62
  CLUS_3               0                67
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        1      2      1
  3Q LOSS WILD-TYPE     28     76     89
D43V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               1                28
  CLUS_2               2                76
  CLUS_3               1                89
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        1      3      0
  3Q LOSS WILD-TYPE     56     68     69
D43V7, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               1                56
  CLUS_2               3                68
  CLUS_3               0                69
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        3      0      1
  3Q LOSS WILD-TYPE     72     99     22
D43V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3                72
  CLUS_2               0                99
  CLUS_3               1                22

Clustering(44) Variable = 4P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED        4      0     11      0      3
  4P LOSS WILD-TYPE     67     40     26     21     25
D44V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED        1     13      2      1      0
  4P LOSS WILD-TYPE     37     11     31     47     38
D44V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED        1     17      0      0
  4P LOSS WILD-TYPE     38     50     59     32
D44V3, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               1                38
  CLUS_2              17                50
  CLUS_3               0                59
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        1      7     10
  4P LOSS WILD-TYPE     69     64     46
D44V4, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               1                69
  CLUS_2               7                64
  CLUS_3              10                46
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        4      9      5
  4P LOSS WILD-TYPE     61     56     62
D44V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               4                61
  CLUS_2               9                56
  CLUS_3               5                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        2     11      5
  4P LOSS WILD-TYPE     27     67     85
D44V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               2                27
  CLUS_2              11                67
  CLUS_3               5                85
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        4      8      6
  4P LOSS WILD-TYPE     53     63     63
D44V7, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               4                53
  CLUS_2               8                63
  CLUS_3               6                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       11      3      4
  4P LOSS WILD-TYPE     64     96     19
D44V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              11                64
  CLUS_2               3                96
  CLUS_3               4                19

Clustering(45) Variable = 4Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED        3      0     13      0      3
  4Q LOSS WILD-TYPE     68     40     24     21     25
D45V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED        1     12      4      1      0
  4Q LOSS WILD-TYPE     37     12     29     47     38
D45V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED        1     18      0      0
  4Q LOSS WILD-TYPE     38     49     59     32
D45V3, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               1                38
  CLUS_2              18                49
  CLUS_3               0                59
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        1      9      9
  4Q LOSS WILD-TYPE     69     62     47
D45V4, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               1                69
  CLUS_2               9                62
  CLUS_3               9                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        5      9      5
  4Q LOSS WILD-TYPE     60     56     62
D45V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               5                60
  CLUS_2               9                56
  CLUS_3               5                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        3     10      6
  4Q LOSS WILD-TYPE     26     68     84
D45V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               3                26
  CLUS_2              10                68
  CLUS_3               6                84
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        5      8      6
  4Q LOSS WILD-TYPE     52     63     63
D45V7, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               5                52
  CLUS_2               8                63
  CLUS_3               6                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       10      5      4
  4Q LOSS WILD-TYPE     65     94     19
D45V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              10                65
  CLUS_2               5                94
  CLUS_3               4                19

Clustering(46) Variable = 5P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED        3      0      3      0      1
  5P LOSS WILD-TYPE     68     40     34     21     27
D46V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED        1      6      0      0      0
  5P LOSS WILD-TYPE     37     18     33     48     38
D46V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        1      6      0      0
  5P LOSS WILD-TYPE     38     61     59     32
D46V3, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                38
  CLUS_2               6                61
  CLUS_3               0                59
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        0      1      6
  5P LOSS WILD-TYPE     70     70     50
D46V4, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               0                70
  CLUS_2               1                70
  CLUS_3               6                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        1      6      0
  5P LOSS WILD-TYPE     64     59     67
D46V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                64
  CLUS_2               6                59
  CLUS_3               0                67
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        0      6      1
  5P LOSS WILD-TYPE     29     72     89
D46V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               0                29
  CLUS_2               6                72
  CLUS_3               1                89
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        1      6      0
  5P LOSS WILD-TYPE     56     65     69
D46V7, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                56
  CLUS_2               6                65
  CLUS_3               0                69
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        6      1      0
  5P LOSS WILD-TYPE     69     98     23
D46V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               6                69
  CLUS_2               1                98
  CLUS_3               0                23

Clustering(47) Variable = 5Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED        3      0      2      0      2
  5Q LOSS WILD-TYPE     68     40     35     21     26
D47V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED        1      6      0      0      0
  5Q LOSS WILD-TYPE     37     18     33     48     38
D47V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        1      6      0      0
  5Q LOSS WILD-TYPE     38     61     59     32
D47V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                38
  CLUS_2               6                61
  CLUS_3               0                59
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        0      1      6
  5Q LOSS WILD-TYPE     70     70     50
D47V4, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               0                70
  CLUS_2               1                70
  CLUS_3               6                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        1      6      0
  5Q LOSS WILD-TYPE     64     59     67
D47V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                64
  CLUS_2               6                59
  CLUS_3               0                67
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        0      6      1
  5Q LOSS WILD-TYPE     29     72     89
D47V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               0                29
  CLUS_2               6                72
  CLUS_3               1                89
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        1      6      0
  5Q LOSS WILD-TYPE     56     65     69
D47V7, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                56
  CLUS_2               6                65
  CLUS_3               0                69
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        6      1      0
  5Q LOSS WILD-TYPE     69     98     23
D47V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               6                69
  CLUS_2               1                98
  CLUS_3               0                23

Clustering(48) Variable = 6P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED        5      0      5      0      3
  6P LOSS WILD-TYPE     66     40     32     21     25
D48V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED        1      5      2      4      0
  6P LOSS WILD-TYPE     37     19     31     44     38
D48V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        1      8      4      0
  6P LOSS WILD-TYPE     38     59     55     32
D48V3, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                38
  CLUS_2               8                59
  CLUS_3               4                55
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        4      3      6
  6P LOSS WILD-TYPE     66     68     50
D48V4, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               4                66
  CLUS_2               3                68
  CLUS_3               6                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        2      5      6
  6P LOSS WILD-TYPE     63     60     61
D48V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               2                63
  CLUS_2               5                60
  CLUS_3               6                61
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        0      7      6
  6P LOSS WILD-TYPE     29     71     84
D48V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               0                29
  CLUS_2               7                71
  CLUS_3               6                84
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        2      5      6
  6P LOSS WILD-TYPE     55     66     63
D48V7, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               2                55
  CLUS_2               5                66
  CLUS_3               6                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        7      5      1
  6P LOSS WILD-TYPE     68     94     22
D48V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               7                68
  CLUS_2               5                94
  CLUS_3               1                22

Clustering(49) Variable = 6Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED        5      0      6      0      5
  6Q LOSS WILD-TYPE     66     40     31     21     23
D49V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED        2      5      5      3      0
  6Q LOSS WILD-TYPE     36     19     28     45     38
D49V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        2     11      3      0
  6Q LOSS WILD-TYPE     37     56     56     32
D49V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               2                37
  CLUS_2              11                56
  CLUS_3               3                56
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        3      7      6
  6Q LOSS WILD-TYPE     67     64     50
D49V4, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               3                67
  CLUS_2               7                64
  CLUS_3               6                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        5      5      6
  6Q LOSS WILD-TYPE     60     60     61
D49V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               5                60
  CLUS_2               5                60
  CLUS_3               6                61
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        1      8      7
  6Q LOSS WILD-TYPE     28     70     83
D49V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                28
  CLUS_2               8                70
  CLUS_3               7                83
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        5      7      4
  6Q LOSS WILD-TYPE     52     64     65
D49V7, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               5                52
  CLUS_2               7                64
  CLUS_3               4                65
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        7      5      4
  6Q LOSS WILD-TYPE     68     94     19
D49V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               7                68
  CLUS_2               5                94
  CLUS_3               4                19

Clustering(50) Variable = 8P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED        2      1      3      0      1
  8P LOSS WILD-TYPE     69     39     34     21     27
D50V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED        1      1      1      1      1
  8P LOSS WILD-TYPE     37     23     32     47     37
D50V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        1      5      1      0
  8P LOSS WILD-TYPE     38     62     58     32
D50V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                38
  CLUS_2               5                62
  CLUS_3               1                58
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        1      3      3
  8P LOSS WILD-TYPE     69     68     53
D50V4, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                69
  CLUS_2               3                68
  CLUS_3               3                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        2      4      1
  8P LOSS WILD-TYPE     63     61     66
D50V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               2                63
  CLUS_2               4                61
  CLUS_3               1                66
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        3      2      2
  8P LOSS WILD-TYPE     26     76     88
D50V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               3                26
  CLUS_2               2                76
  CLUS_3               2                88
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        2      4      1
  8P LOSS WILD-TYPE     55     67     68
D50V7, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               2                55
  CLUS_2               4                67
  CLUS_3               1                68
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        2      2      3
  8P LOSS WILD-TYPE     73     97     20
D50V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               2                73
  CLUS_2               2                97
  CLUS_3               3                20

Clustering(51) Variable = 8Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED        1      0      2      0      1
  8Q LOSS WILD-TYPE     70     40     35     21     27
D51V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED        1      1      0      1      0
  8Q LOSS WILD-TYPE     37     23     33     47     38
D51V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        1      3      0      0
  8Q LOSS WILD-TYPE     38     64     59     32
D51V3, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                38
  CLUS_2               3                64
  CLUS_3               0                59
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        1      1      2
  8Q LOSS WILD-TYPE     69     70     54
D51V4, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                69
  CLUS_2               1                70
  CLUS_3               2                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        1      2      1
  8Q LOSS WILD-TYPE     64     63     66
D51V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                64
  CLUS_2               2                63
  CLUS_3               1                66
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        1      1      2
  8Q LOSS WILD-TYPE     28     77     88
D51V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                28
  CLUS_2               1                77
  CLUS_3               2                88
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        1      2      1
  8Q LOSS WILD-TYPE     56     69     68
D51V7, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                56
  CLUS_2               2                69
  CLUS_3               1                68
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        1      2      1
  8Q LOSS WILD-TYPE     74     97     22
D51V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                74
  CLUS_2               2                97
  CLUS_3               1                22

Clustering(52) Variable = 9P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED        8      0     13      0      1
  9P LOSS WILD-TYPE     63     40     24     21     27
D52V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED        4     10      5      0      0
  9P LOSS WILD-TYPE     34     14     28     48     38
D52V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED        2     20      0      0
  9P LOSS WILD-TYPE     37     47     59     32
D52V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               2                37
  CLUS_2              20                47
  CLUS_3               0                59
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        0     13      9
  9P LOSS WILD-TYPE     70     58     47
D52V4, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               0                70
  CLUS_2              13                58
  CLUS_3               9                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        4     11      7
  9P LOSS WILD-TYPE     61     54     60
D52V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               4                61
  CLUS_2              11                54
  CLUS_3               7                60
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        4     13      5
  9P LOSS WILD-TYPE     25     65     85
D52V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               4                25
  CLUS_2              13                65
  CLUS_3               5                85
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        5     12      5
  9P LOSS WILD-TYPE     52     59     64
D52V7, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               5                52
  CLUS_2              12                59
  CLUS_3               5                64
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       12      4      6
  9P LOSS WILD-TYPE     63     95     17
D52V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              12                63
  CLUS_2               4                95
  CLUS_3               6                17

Clustering(53) Variable = 9Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED       10      0     12      0      2
  9Q LOSS WILD-TYPE     61     40     25     21     26
D53V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED        4     12      5      0      0
  9Q LOSS WILD-TYPE     34     12     28     48     38
D53V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        2     22      0      0
  9Q LOSS WILD-TYPE     37     45     59     32
D53V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               2                37
  CLUS_2              22                45
  CLUS_3               0                59
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        0     13     11
  9Q LOSS WILD-TYPE     70     58     45
D53V4, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               0                70
  CLUS_2              13                58
  CLUS_3              11                45
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        4     12      8
  9Q LOSS WILD-TYPE     61     53     59
D53V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               4                61
  CLUS_2              12                53
  CLUS_3               8                59
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        5     16      3
  9Q LOSS WILD-TYPE     24     62     87
D53V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               5                24
  CLUS_2              16                62
  CLUS_3               3                87
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        5     14      5
  9Q LOSS WILD-TYPE     52     57     64
D53V7, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               5                52
  CLUS_2              14                57
  CLUS_3               5                64
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       15      2      7
  9Q LOSS WILD-TYPE     60     97     16
D53V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              15                60
  CLUS_2               2                97
  CLUS_3               7                16

Clustering(54) Variable = 10P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED        0      0      8      0      4
  10P LOSS WILD-TYPE     71     40     29     21     24
D54V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED        0      6      3      1      0
  10P LOSS WILD-TYPE     38     18     30     47     38
D54V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED        0     11      1      0
  10P LOSS WILD-TYPE     39     56     58     32
D54V3, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                0                 39
  CLUS_2               11                 56
  CLUS_3                1                 58
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        1      8      3
  10P LOSS WILD-TYPE     69     63     53
D54V4, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                1                 69
  CLUS_2                8                 63
  CLUS_3                3                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        3      6      3
  10P LOSS WILD-TYPE     62     59     64
D54V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                3                 62
  CLUS_2                6                 59
  CLUS_3                3                 64
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        6      4      2
  10P LOSS WILD-TYPE     23     74     88
D54V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                6                 23
  CLUS_2                4                 74
  CLUS_3                2                 88
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        3      7      2
  10P LOSS WILD-TYPE     54     64     67
D54V7, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                3                 54
  CLUS_2                7                 64
  CLUS_3                2                 67
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        5      2      5
  10P LOSS WILD-TYPE     70     97     18
D54V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                5                 70
  CLUS_2                2                 97
  CLUS_3                5                 18

Clustering(55) Variable = 10Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED        1      0      7      0      4
  10Q LOSS WILD-TYPE     70     40     30     21     24
D55V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED        0      7      3      1      0
  10Q LOSS WILD-TYPE     38     17     30     47     38
D55V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED        0     11      1      0
  10Q LOSS WILD-TYPE     39     56     58     32
D55V3, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                0                 39
  CLUS_2               11                 56
  CLUS_3                1                 58
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        1      9      2
  10Q LOSS WILD-TYPE     69     62     54
D55V4, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                1                 69
  CLUS_2                9                 62
  CLUS_3                2                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        3      7      2
  10Q LOSS WILD-TYPE     62     58     65
D55V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                3                 62
  CLUS_2                7                 58
  CLUS_3                2                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        6      5      1
  10Q LOSS WILD-TYPE     23     73     89
D55V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                6                 23
  CLUS_2                5                 73
  CLUS_3                1                 89
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        3      8      1
  10Q LOSS WILD-TYPE     54     63     68
D55V7, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                3                 54
  CLUS_2                8                 63
  CLUS_3                1                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        5      1      6
  10Q LOSS WILD-TYPE     70     98     17
D55V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                5                 70
  CLUS_2                1                 98
  CLUS_3                6                 17

Clustering(56) Variable = 11P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED        2      0      5      0      3
  11P LOSS WILD-TYPE     69     40     32     21     25
D56V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED        0      5      2      2      0
  11P LOSS WILD-TYPE     38     19     31     46     38
D56V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        1      8      1      0
  11P LOSS WILD-TYPE     38     59     58     32
D56V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                8                 59
  CLUS_3                1                 58
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        2      3      5
  11P LOSS WILD-TYPE     68     68     51
D56V4, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                2                 68
  CLUS_2                3                 68
  CLUS_3                5                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        2      4      4
  11P LOSS WILD-TYPE     63     61     63
D56V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                2                 63
  CLUS_2                4                 61
  CLUS_3                4                 63
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        2      6      2
  11P LOSS WILD-TYPE     27     72     88
D56V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                2                 27
  CLUS_2                6                 72
  CLUS_3                2                 88
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        2      6      2
  11P LOSS WILD-TYPE     55     65     67
D56V7, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                2                 55
  CLUS_2                6                 65
  CLUS_3                2                 67
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        7      2      1
  11P LOSS WILD-TYPE     68     97     22
D56V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                7                 68
  CLUS_2                2                 97
  CLUS_3                1                 22

Clustering(57) Variable = 11Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED        2      0      8      0      4
  11Q LOSS WILD-TYPE     69     40     29     21     24
D57V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED        1      6      5      2      0
  11Q LOSS WILD-TYPE     37     18     28     46     38
D57V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        2     11      1      0
  11Q LOSS WILD-TYPE     37     56     58     32
D57V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                2                 37
  CLUS_2               11                 56
  CLUS_3                1                 58
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        2      7      5
  11Q LOSS WILD-TYPE     68     64     51
D57V4, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                2                 68
  CLUS_2                7                 64
  CLUS_3                5                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        5      6      3
  11Q LOSS WILD-TYPE     60     59     64
D57V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                5                 60
  CLUS_2                6                 59
  CLUS_3                3                 64
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        3      7      4
  11Q LOSS WILD-TYPE     26     71     86
D57V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                3                 26
  CLUS_2                7                 71
  CLUS_3                4                 86
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        5      7      2
  11Q LOSS WILD-TYPE     52     64     67
D57V7, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                5                 52
  CLUS_2                7                 64
  CLUS_3                2                 67
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        7      4      3
  11Q LOSS WILD-TYPE     68     95     20
D57V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                7                 68
  CLUS_2                4                 95
  CLUS_3                3                 20

Clustering(58) Variable = 13Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED        6      0      7      0      5
  13Q LOSS WILD-TYPE     65     40     30     21     23
D58V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED        0     13      2      2      0
  13Q LOSS WILD-TYPE     38     11     31     46     38
D58V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED        0     16      2      0
  13Q LOSS WILD-TYPE     39     51     57     32
D58V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                0                 39
  CLUS_2               16                 51
  CLUS_3                2                 57
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        2      6     10
  13Q LOSS WILD-TYPE     68     65     46
D58V4, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                2                 68
  CLUS_2                6                 65
  CLUS_3               10                 46
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        2     11      5
  13Q LOSS WILD-TYPE     63     54     62
D58V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                2                 63
  CLUS_2               11                 54
  CLUS_3                5                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        0     13      5
  13Q LOSS WILD-TYPE     29     65     85
D58V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                0                 29
  CLUS_2               13                 65
  CLUS_3                5                 85
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        2     11      5
  13Q LOSS WILD-TYPE     55     60     64
D58V7, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                2                 55
  CLUS_2               11                 60
  CLUS_3                5                 64
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       13      2      3
  13Q LOSS WILD-TYPE     62     97     20
D58V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               13                 62
  CLUS_2                2                 97
  CLUS_3                3                 20

Clustering(59) Variable = 14Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED        5      0     25      0      5
  14Q LOSS WILD-TYPE     66     40     12     21     23
D59V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED       10     11      3      6      1
  14Q LOSS WILD-TYPE     28     13     30     42     37
D59V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        7     22      4      2
  14Q LOSS WILD-TYPE     32     45     55     30
D59V3, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                7                 32
  CLUS_2               22                 45
  CLUS_3                4                 55
  CLUS_4                2                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        4     16     15
  14Q LOSS WILD-TYPE     66     55     41
D59V4, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                4                 66
  CLUS_2               16                 55
  CLUS_3               15                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        9     15     11
  14Q LOSS WILD-TYPE     56     50     56
D59V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                9                 56
  CLUS_2               15                 50
  CLUS_3               11                 56
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        6     16     13
  14Q LOSS WILD-TYPE     23     62     77
D59V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                6                 23
  CLUS_2               16                 62
  CLUS_3               13                 77
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        8     17     10
  14Q LOSS WILD-TYPE     49     54     59
D59V7, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                8                 49
  CLUS_2               17                 54
  CLUS_3               10                 59
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       17     13      5
  14Q LOSS WILD-TYPE     58     86     18
D59V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               17                 58
  CLUS_2               13                 86
  CLUS_3                5                 18

Clustering(60) Variable = 15Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED        4      0     11      0      4
  15Q LOSS WILD-TYPE     67     40     26     21     24
D60V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED        7      8      1      2      0
  15Q LOSS WILD-TYPE     31     16     32     46     38
D60V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        4     13      2      0
  15Q LOSS WILD-TYPE     35     54     57     32
D60V3, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                4                 35
  CLUS_2               13                 54
  CLUS_3                2                 57
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        2      6     11
  15Q LOSS WILD-TYPE     68     65     45
D60V4, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                2                 68
  CLUS_2                6                 65
  CLUS_3               11                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        4     10      5
  15Q LOSS WILD-TYPE     61     55     62
D60V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                4                 61
  CLUS_2               10                 55
  CLUS_3                5                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        1     11      7
  15Q LOSS WILD-TYPE     28     67     83
D60V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                1                 28
  CLUS_2               11                 67
  CLUS_3                7                 83
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        3     11      5
  15Q LOSS WILD-TYPE     54     60     64
D60V7, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                3                 54
  CLUS_2               11                 60
  CLUS_3                5                 64
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       11      6      2
  15Q LOSS WILD-TYPE     64     93     21
D60V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               11                 64
  CLUS_2                6                 93
  CLUS_3                2                 21

Clustering(61) Variable = 16P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED        1      0      3      0      0
  16P LOSS WILD-TYPE     70     40     34     21     28
D61V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED        0      3      1      0      0
  16P LOSS WILD-TYPE     38     21     32     48     38
D61V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        0      4      0      0
  16P LOSS WILD-TYPE     39     63     59     32
D61V3, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                4                 63
  CLUS_3                0                 59
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        0      1      3
  16P LOSS WILD-TYPE     70     70     53
D61V4, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                 70
  CLUS_2                1                 70
  CLUS_3                3                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        1      2      1
  16P LOSS WILD-TYPE     64     63     66
D61V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                1                 64
  CLUS_2                2                 63
  CLUS_3                1                 66
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        0      3      1
  16P LOSS WILD-TYPE     29     75     89
D61V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                 29
  CLUS_2                3                 75
  CLUS_3                1                 89
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        1      2      1
  16P LOSS WILD-TYPE     56     69     68
D61V7, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                1                 56
  CLUS_2                2                 69
  CLUS_3                1                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        3      0      1
  16P LOSS WILD-TYPE     72     99     22
D61V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                3                 72
  CLUS_2                0                 99
  CLUS_3                1                 22

Clustering(62) Variable = 16Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED        1      0      4      0      0
  16Q LOSS WILD-TYPE     70     40     33     21     28
D62V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED        0      4      1      0      0
  16Q LOSS WILD-TYPE     38     20     32     48     38
D62V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        0      5      0      0
  16Q LOSS WILD-TYPE     39     62     59     32
D62V3, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                5                 62
  CLUS_3                0                 59
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        0      2      3
  16Q LOSS WILD-TYPE     70     69     53
D62V4, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                0                 70
  CLUS_2                2                 69
  CLUS_3                3                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        1      3      1
  16Q LOSS WILD-TYPE     64     62     66
D62V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                1                 64
  CLUS_2                3                 62
  CLUS_3                1                 66
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        1      3      1
  16Q LOSS WILD-TYPE     28     75     89
D62V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                3                 75
  CLUS_3                1                 89
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        1      3      1
  16Q LOSS WILD-TYPE     56     68     68
D62V7, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                1                 56
  CLUS_2                3                 68
  CLUS_3                1                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        3      0      2
  16Q LOSS WILD-TYPE     72     99     21
D62V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                3                 72
  CLUS_2                0                 99
  CLUS_3                2                 21

Clustering(63) Variable = 17P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED        3      0      4      0      1
  17P LOSS WILD-TYPE     68     40     33     21     27
D63V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED        0      5      2      0      0
  17P LOSS WILD-TYPE     38     19     31     48     38
D63V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED        0      8      0      0
  17P LOSS WILD-TYPE     39     59     59     32
D63V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                8                 59
  CLUS_3                0                 59
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        0      3      5
  17P LOSS WILD-TYPE     70     68     51
D63V4, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                0                 70
  CLUS_2                3                 68
  CLUS_3                5                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        2      5      1
  17P LOSS WILD-TYPE     63     60     66
D63V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                2                 63
  CLUS_2                5                 60
  CLUS_3                1                 66
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        2      5      1
  17P LOSS WILD-TYPE     27     73     89
D63V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                2                 27
  CLUS_2                5                 73
  CLUS_3                1                 89
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        2      5      1
  17P LOSS WILD-TYPE     55     66     68
D63V7, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                2                 55
  CLUS_2                5                 66
  CLUS_3                1                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        5      1      2
  17P LOSS WILD-TYPE     70     98     21
D63V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                5                 70
  CLUS_2                1                 98
  CLUS_3                2                 21

Clustering(64) Variable = 18P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED       12      2     12      0      4
  18P LOSS WILD-TYPE     59     38     25     21     24
D64V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED        2     13      8      2      3
  18P LOSS WILD-TYPE     36     11     25     46     35
D64V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        3     24      1      2
  18P LOSS WILD-TYPE     36     43     58     30
D64V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                3                 36
  CLUS_2               24                 43
  CLUS_3                1                 58
  CLUS_4                2                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        3     15     12
  18P LOSS WILD-TYPE     67     56     44
D64V4, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                3                 67
  CLUS_2               15                 56
  CLUS_3               12                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       10     15      5
  18P LOSS WILD-TYPE     55     50     62
D64V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               10                 55
  CLUS_2               15                 50
  CLUS_3                5                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        4     15     11
  18P LOSS WILD-TYPE     25     63     79
D64V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                4                 25
  CLUS_2               15                 63
  CLUS_3               11                 79
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       10     15      5
  18P LOSS WILD-TYPE     47     56     64
D64V7, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               10                 47
  CLUS_2               15                 56
  CLUS_3                5                 64
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       16      9      5
  18P LOSS WILD-TYPE     59     90     18
D64V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               16                 59
  CLUS_2                9                 90
  CLUS_3                5                 18

Clustering(65) Variable = 18Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED       12      2     14      0      4
  18Q LOSS WILD-TYPE     59     38     23     21     24
D65V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED        2     15      8      2      3
  18Q LOSS WILD-TYPE     36      9     25     46     35
D65V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED        3     26      1      2
  18Q LOSS WILD-TYPE     36     41     58     30
D65V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                3                 36
  CLUS_2               26                 41
  CLUS_3                1                 58
  CLUS_4                2                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        3     16     13
  18Q LOSS WILD-TYPE     67     55     43
D65V4, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                3                 67
  CLUS_2               16                 55
  CLUS_3               13                 43
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       10     16      6
  18Q LOSS WILD-TYPE     55     49     61
D65V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               10                 55
  CLUS_2               16                 49
  CLUS_3                6                 61
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        5     16     11
  18Q LOSS WILD-TYPE     24     62     79
D65V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                5                 24
  CLUS_2               16                 62
  CLUS_3               11                 79
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       10     16      6
  18Q LOSS WILD-TYPE     47     55     63
D65V7, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               10                 47
  CLUS_2               16                 55
  CLUS_3                6                 63
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       17      9      6
  18Q LOSS WILD-TYPE     58     90     17
D65V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               17                 58
  CLUS_2                9                 90
  CLUS_3                6                 17

Clustering(66) Variable = 19P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED        1      1      5      0      5
  19P LOSS WILD-TYPE     70     39     32     21     23
D66V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED        1      4      4      3      0
  19P LOSS WILD-TYPE     37     20     29     45     38
D66V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        4      7      1      0
  19P LOSS WILD-TYPE     35     60     58     32
D66V3, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                4                 35
  CLUS_2                7                 60
  CLUS_3                1                 58
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        3      8      1
  19P LOSS WILD-TYPE     67     63     55
D66V4, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                3                 67
  CLUS_2                8                 63
  CLUS_3                1                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        6      4      2
  19P LOSS WILD-TYPE     59     61     65
D66V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                6                 59
  CLUS_2                4                 61
  CLUS_3                2                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        4      4      4
  19P LOSS WILD-TYPE     25     74     86
D66V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                4                 25
  CLUS_2                4                 74
  CLUS_3                4                 86
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        6      5      1
  19P LOSS WILD-TYPE     51     66     68
D66V7, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                6                 51
  CLUS_2                5                 66
  CLUS_3                1                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        4      5      3
  19P LOSS WILD-TYPE     71     94     20
D66V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                4                 71
  CLUS_2                5                 94
  CLUS_3                3                 20

Clustering(67) Variable = 19Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        1      1      5      0      4
  19Q LOSS WILD-TYPE     70     39     32     21     24
D67V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        1      5      2      3      0
  19Q LOSS WILD-TYPE     37     19     31     45     38
D67V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        3      7      1      0
  19Q LOSS WILD-TYPE     36     60     58     32
D67V3, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                3                 36
  CLUS_2                7                 60
  CLUS_3                1                 58
  CLUS_4                0                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        3      6      2
  19Q LOSS WILD-TYPE     67     65     54
D67V4, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                3                 67
  CLUS_2                6                 65
  CLUS_3                2                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        5      4      2
  19Q LOSS WILD-TYPE     60     61     65
D67V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                5                 60
  CLUS_2                4                 61
  CLUS_3                2                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        3      5      3
  19Q LOSS WILD-TYPE     26     73     87
D67V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                3                 26
  CLUS_2                5                 73
  CLUS_3                3                 87
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        5      5      1
  19Q LOSS WILD-TYPE     52     66     68
D67V7, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                5                 52
  CLUS_2                5                 66
  CLUS_3                1                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        5      3      3
  19Q LOSS WILD-TYPE     70     96     20
D67V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                5                 70
  CLUS_2                3                 96
  CLUS_3                3                 20

Clustering(68) Variable = 21Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED        5      4      9      2     12
  21Q LOSS WILD-TYPE     66     36     28     19     16
D68V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED        6      7      6      7      2
  21Q LOSS WILD-TYPE     32     17     27     41     36
D68V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        8     13      7      4
  21Q LOSS WILD-TYPE     31     54     52     28
D68V3, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                8                 31
  CLUS_2               13                 54
  CLUS_3                7                 52
  CLUS_4                4                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       11     12      9
  21Q LOSS WILD-TYPE     59     59     47
D68V4, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               11                 59
  CLUS_2               12                 59
  CLUS_3                9                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       12      8     12
  21Q LOSS WILD-TYPE     53     57     55
D68V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               12                 53
  CLUS_2                8                 57
  CLUS_3               12                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        3     13     16
  21Q LOSS WILD-TYPE     26     65     74
D68V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                3                 26
  CLUS_2               13                 65
  CLUS_3               16                 74
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        8      9     15
  21Q LOSS WILD-TYPE     49     62     54
D68V7, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                8                 49
  CLUS_2                9                 62
  CLUS_3               15                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       11     17      4
  21Q LOSS WILD-TYPE     64     82     19
D68V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               11                 64
  CLUS_2               17                 82
  CLUS_3                4                 19

Clustering(69) Variable = 22Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED       15      4     19      0      6
  22Q LOSS WILD-TYPE     56     36     18     21     22
D69V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED        5     15     14      6      1
  22Q LOSS WILD-TYPE     33      9     19     42     37
D69V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        7     31      4      2
  22Q LOSS WILD-TYPE     32     36     55     30
D69V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                7                 32
  CLUS_2               31                 36
  CLUS_3                4                 55
  CLUS_4                2                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        8     24     12
  22Q LOSS WILD-TYPE     62     47     44
D69V4, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                8                 62
  CLUS_2               24                 47
  CLUS_3               12                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       17     15     12
  22Q LOSS WILD-TYPE     48     50     55
D69V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               17                 48
  CLUS_2               15                 50
  CLUS_3               12                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       12     15     17
  22Q LOSS WILD-TYPE     17     63     73
D69V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               12                 17
  CLUS_2               15                 63
  CLUS_3               17                 73
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       17     17     10
  22Q LOSS WILD-TYPE     40     54     59
D69V7, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               17                 40
  CLUS_2               17                 54
  CLUS_3               10                 59
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       16     17     11
  22Q LOSS WILD-TYPE     59     82     12
D69V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               16                 59
  CLUS_2               17                 82
  CLUS_3               11                 12

Clustering(70) Variable = XQ LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED        4      1     13      1      1
  XQ LOSS WILD-TYPE     67     39     24     20     27
D70V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED        1     10      3      2      1
  XQ LOSS WILD-TYPE     37     14     30     46     37
D70V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        2     16      2      0
  XQ LOSS WILD-TYPE     37     51     57     32
D70V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               2                37
  CLUS_2              16                51
  CLUS_3               2                57
  CLUS_4               0                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        3      9      8
  XQ LOSS WILD-TYPE     67     62     48
D70V4, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               3                67
  CLUS_2               9                62
  CLUS_3               8                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        5     11      4
  XQ LOSS WILD-TYPE     60     54     63
D70V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               5                60
  CLUS_2              11                54
  CLUS_3               4                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        6      8      6
  XQ LOSS WILD-TYPE     23     70     84
D70V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               6                23
  CLUS_2               8                70
  CLUS_3               6                84
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        5     11      4
  XQ LOSS WILD-TYPE     52     60     65
D70V7, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               5                52
  CLUS_2              11                60
  CLUS_3               4                65
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        7      7      6
  XQ LOSS WILD-TYPE     68     92     17
D70V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               7                68
  CLUS_2               7                92
  CLUS_3               6                17
> q(save="no")
