Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
ClinicalAnalysisAllGenes_new:data.file	LGG-TP.meth.by_min_clin_corr.data.txt	gdac.broadinstitute.org_LGG-TP.Methylation_Preprocess.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	table6.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:data.file	LGG-TP.meth.by_min_clin_corr.data.txt	gdac.broadinstitute.org_LGG-TP.Methylation_Preprocess.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	table4.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:data.file	LGG-TP.meth.by_min_clin_corr.data.txt	gdac.broadinstitute.org_LGG-TP.Methylation_Preprocess.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	table12.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:data.file	LGG-TP.meth.by_min_clin_corr.data.txt	gdac.broadinstitute.org_LGG-TP.Methylation_Preprocess.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:data.file	LGG-TP.meth.by_min_clin_corr.data.txt	gdac.broadinstitute.org_LGG-TP.Methylation_Preprocess.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	table8.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:data.file	LGG-TP.meth.by_min_clin_corr.data.txt	gdac.broadinstitute.org_LGG-TP.Methylation_Preprocess.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	table10.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:data.file	LGG-TP.meth.by_min_clin_corr.data.txt	gdac.broadinstitute.org_LGG-TP.Methylation_Preprocess.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	supp.table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:data.file	LGG-TP.meth.by_min_clin_corr.data.txt	gdac.broadinstitute.org_LGG-TP.Methylation_Preprocess.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V4ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:data.file	LGG-TP.meth.by_min_clin_corr.data.txt	gdac.broadinstitute.org_LGG-TP.Methylation_Preprocess.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V6ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:data.file	LGG-TP.meth.by_min_clin_corr.data.txt	gdac.broadinstitute.org_LGG-TP.Methylation_Preprocess.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V2ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:data.file	LGG-TP.meth.by_min_clin_corr.data.txt	gdac.broadinstitute.org_LGG-TP.Methylation_Preprocess.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V3ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:data.file	LGG-TP.meth.by_min_clin_corr.data.txt	gdac.broadinstitute.org_LGG-TP.Methylation_Preprocess.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V5ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:data.file	LGG-TP.meth.by_min_clin_corr.data.txt	gdac.broadinstitute.org_LGG-TP.Methylation_Preprocess.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V2ex.pdf	clinical_Correlation-Clinical_Expression	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:data.file	LGG-TP.meth.by_min_clin_corr.data.txt	gdac.broadinstitute.org_LGG-TP.Methylation_Preprocess.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V3ex.pdf	clinical_Correlation-Clinical_Expression	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:data.file	LGG-TP.meth.by_min_clin_corr.data.txt	gdac.broadinstitute.org_LGG-TP.Methylation_Preprocess.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V6ex.pdf	clinical_Correlation-Clinical_Expression	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:data.file	LGG-TP.meth.by_min_clin_corr.data.txt	gdac.broadinstitute.org_LGG-TP.Methylation_Preprocess.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V4ex.pdf	clinical_Correlation-Clinical_Expression	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:data.file	LGG-TP.meth.by_min_clin_corr.data.txt	gdac.broadinstitute.org_LGG-TP.Methylation_Preprocess.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V5ex.pdf	clinical_Correlation-Clinical_Expression	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:data.file	LGG-TP.meth.by_min_clin_corr.data.txt	gdac.broadinstitute.org_LGG-TP.Methylation_Preprocess.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:data.file	LGG-TP.meth.by_min_clin_corr.data.txt	gdac.broadinstitute.org_LGG-TP.Methylation_Preprocess.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file	LGG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	table6.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file	LGG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	table4.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file	LGG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	table12.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file	LGG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file	LGG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	table8.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file	LGG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	table10.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file	LGG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	supp.table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file	LGG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V4ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file	LGG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V6ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file	LGG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V2ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file	LGG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V3ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file	LGG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V5ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file	LGG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V2ex.pdf	clinical_Correlation-Clinical_Expression	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file	LGG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V3ex.pdf	clinical_Correlation-Clinical_Expression	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file	LGG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V6ex.pdf	clinical_Correlation-Clinical_Expression	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file	LGG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V4ex.pdf	clinical_Correlation-Clinical_Expression	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file	LGG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	V5ex.pdf	clinical_Correlation-Clinical_Expression	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file	LGG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file	LGG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:58	Correlate_Clinical_vs_Methylation_2014041600	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_LGG-TP.Correlate_Clinical_vs_Methylation.Level_4.2014041600.0.0	yes
