
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LGG-TP/8312260/LGG-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/LGG-TP/8142957/LGG-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=.05", "-cQ=0.25", "-MF=ALL", "-oT=LGG-TP", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=LGG-TP"
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/LGG-TP/8142957/LGG-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LGG-TP/8312260/LGG-TP.mergedcluster.txt"

nPatients in clinical file=362, in cluster file=516, common to both=362
[1]  12 362
[1] "MRNA_CNMF"
[1] 3
 1  2  3 
 9 10  8 
 1  2  3 
 9 10  8 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3  4 
 7  6 10  4 
 1  2  3  4 
 7  6 10  4 
[1] "CN_CNMF"
[1] 3
  1   2   3 
108  82 169 
  1   2   3 
108  82 169 
[1] "METHLYATION_CNMF"
[1] 3
  1   2   3   4 
153  45  48 111 
  1   2   3   4 
153  45  48 111 
[1] "RPPA_CNMF"
[1] 3
 1  2  3  4 
48 61 68 71 
 1  2  3  4 
48 61 68 71 
[1] "RPPA_CHIERARCHICAL"
[1] 3
  1   2   3 
  7 127 114 
  1   2   3 
  7 127 114 
[1] "MRNASEQ_CNMF"
[1] 3
  1   2   3   4   5   6 
 91  65  73 104   7  19 
  1   2   3   4   5   6 
 91  65  73 104   7  19 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
172  60 127 
  1   2   3 
172  60 127 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3   4   5   6   7 
 46  56  25  29 107  63  22 
  1   2   3   4   5   6   7 
 46  56  25  29 107  63  22 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
155  15 178 
  1   2   3 
155  15 178 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
  1   2   3   4   5   6   7 
 70  61  39 100  39  16  23 
  1   2   3   4   5   6   7 
 70  61  39 100  39  16  23 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
  1   2   3 
  5 158 185 
  1   2   3 
  5 158 185 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "DCCUPLOADDATE"                         
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "RADIATIONTHERAPY"                      
[11] "KARNOFSKYPERFORMANCESCORE"             
[12] "HISTOLOGICALTYPE"                      
[13] "RADIATIONS.RADIATION.REGIMENINDICATION"
[14] "BATCHNUMBER"                           

Input Data has 14 rows and 362 columns.

[1] "Batch" "14"   
[1] "Last Follow UP"
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
         143           NA           NA          552          323         1966 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
        1222            3           NA          303           NA           NA 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
         725          546          378          258          230          244 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
         225          201         3733         2493         2289         1458 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
        2218         1419         1526         1354         1112         2381 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
         915          313          387          840          822          573 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
         559         2219          383          335          573          511 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
         182          489          469          846          448          415 
TCGA-DB-A64X TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
         332           NA          968          922          438          244 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DU-5847 
          NA          901          479          237          117          548 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
         443          531           NA          407          257          207 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
        5546          576          532          461         6423         1585 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
         682         1491         2286         1401           NA           37 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
        2660          214           NA           NA          605           NA 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
          NA         3470          242          235           NA           NA 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
        4752         4206           NA           NA           NA           NA 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
          NA         2761           NA          800           NA           NA 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
        2869           NA           NA           NA           NA         1834 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
          NA         1277           84           NA           NA          121 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
         629          651          582          516          471          431 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
         433          383          460          151          111          172 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
         371          263           82          220          182           NA 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T8 TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
         217           NA         3787         1525         2052         1251 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
        2433         1762         4084         2379         2907         3978 
TCGA-EZ-7264 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
         436         1453          547         1045          979          571 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
         454          760          729          413          467          544 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
        1219          686          627          611          394          416 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
         433          487          611          455          361          472 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
         744           18          160          113          294          214 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Z 
         202          214          128          124          322          328 
TCGA-FG-A710 TCGA-FG-A713 TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
         698          159            4            3          203          238 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
         268            4            1          503          114          530 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
         199          738          194          216         2287         1800 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
        1826         4690          122          153          908          705 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
        3283          139          526           NA          671         1399 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
        1706         1752           NA          434            5          494 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
          23         1359          184         1300            3          964 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
         455            3            3           90          533          210 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
         442         1201          585         1189            7         1540 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
          15          718         1130           10            4          112 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
         162           89           52          343          956           50 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
         494          286           NA          654         1004          372 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
         190            3           14           76          120          143 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
           7          900          118           52          488          478 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
           7          319            4            2          447            3 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
          NA           82          396           55          491          162 
TCGA-HT-A61A TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
         194          910          409          253          585         1222 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
        1092          131          262          272          646          542 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
         321          240          294          201           NA         1301 
TCGA-P5-A5EW TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F6 TCGA-QH-A65R TCGA-QH-A65S 
         204          125          179           39          175           77 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
         147          237          125          127           NA           90 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
          NA           NA           67           96           18          192 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-R8-A6MK 
         119          144           58            7          153         2702 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2860          993         1806           NA         2101          571 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U6 
         860          856          658          344          475          300 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WE TCGA-S9-A6WG 
        2878         2546           NA         3156         2208         2146 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WO TCGA-S9-A6WP 
         697         2149          331          283          231          187 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J1 
         103          434           NA          383          128          249 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
          62          247          109          123          554          396 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R8 TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
          NA         2649           NA         1504         1093          770 
TCGA-TM-A7CA TCGA-TM-A7CF 
         687         1472 
Variable 1:'AGE':	nDistinctValues=58,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=68,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=277,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=21,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 12:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'BATCH.NUMBER':	nDistinctValues=24,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "KARNOFSKY.PERFORMANCE.SCORE"           
[4] "HISTOLOGICAL.TYPE"                     
[5] "RADIATIONS.RADIATION.REGIMENINDICATION"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 362 columns, 1 survival variables, and 5 non-survival variables.
AGE, nv=58, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=7, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2      0 1
  subtype1 5 4
  subtype2 7 3
  subtype3 5 3
subtype1 subtype2 subtype3 
       9       10        8 
subtype1 subtype2 subtype3 
       4        3        3 
$subtype1
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-DB-5273 TCGA-DB-5280 TCGA-DH-5142 
       43.89        18.15        10.62        81.96        36.56        30.31 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5322 
       50.14        67.46       130.78 

$subtype2
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-DB-5274 TCGA-DB-5275 TCGA-DH-5140 
       64.64         0.10         9.96        75.25        47.93        19.96 
TCGA-DH-5141 TCGA-DH-5144 TCGA-E1-5304 TCGA-E1-5318 
       31.82         8.02        41.13        78.21 

$subtype3
TCGA-CS-5395 TCGA-DB-5270 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5281 
       21.01       122.73        72.92        46.65        50.17        78.28 
TCGA-DH-5143 TCGA-E1-5311 
       14.40       134.27 

subtype1 subtype2 subtype3 
   10.62     0.10    14.40 
subtype1 subtype2 subtype3 
  130.78    78.21   134.27 
subtype1 subtype2 subtype3 
  43.890   36.475   61.545 
[1] "10.6 - 130.8 (43.9)" "0.1 - 78.2 (36.5)"   "14.4 - 134.3 (61.5)"
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[25] "subtype3" "subtype2" "subtype1"
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[25] "subtype3" "subtype2" "subtype1"
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[25] "subtype3" "subtype2" "subtype1"
D1V2, continuous
D1V3, binary
          cls
clus       0 1
  subtype1 2 7
  subtype2 6 4
  subtype3 1 7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2    7
  subtype2    6    4
  subtype3    1    7
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        2        6        1
  MALE          7        4        7
D1V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1           7                2                 0
  subtype2           2                3                 5
  subtype3           1                4                 3
D1V5, multiclass
D1V6, binary
          cls
clus       0 1
  subtype1 7 2
  subtype2 8 2
  subtype3 5 3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7    2
  subtype2    8    2
  subtype3    5    3
     clus
vv    subtype1 subtype2 subtype3
  NO         7        8        5
  YES        2        2        3

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2      0 1
  subtype1 6 1
  subtype2 5 1
  subtype3 5 5
  subtype4 1 3
subtype1 subtype2 subtype3 subtype4 
       7        6       10        4 
subtype1 subtype2 subtype3 subtype4 
       1        1        5        3 
$subtype1
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-DB-5274 TCGA-DH-5141 TCGA-DH-5144 
       64.64         0.10         9.96        75.25        31.82         8.02 
TCGA-E1-5318 
       78.21 

$subtype2
TCGA-DB-5270 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5281 TCGA-DH-5143 TCGA-E1-5311 
      122.73        72.92        50.17        78.28        14.40       134.27 

$subtype3
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5395 TCGA-DB-5273 TCGA-DB-5280 
       43.89        18.15        10.62        21.01        81.96        36.56 
TCGA-DH-5142 TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5322 
       30.31        50.14        67.46       130.78 

$subtype4
TCGA-DB-5275 TCGA-DB-5277 TCGA-DH-5140 TCGA-E1-5304 
       47.93        46.65        19.96        41.13 

subtype1 subtype2 subtype3 subtype4 
    0.10    14.40    10.62    19.96 
subtype1 subtype2 subtype3 subtype4 
   78.21   134.27   130.78    47.93 
subtype1 subtype2 subtype3 subtype4 
  31.820   75.600   40.225   43.890 
[1] "0.1 - 78.2 (31.8)"   "14.4 - 134.3 (75.6)" "10.6 - 130.8 (40.2)"
[4] "20.0 - 47.9 (43.9)" 
 [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [7] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype2"
[13] "subtype4" "subtype2" "subtype3" "subtype2" "subtype4" "subtype1"
[19] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
[25] "subtype2" "subtype1" "subtype3"
 [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [7] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype2"
[13] "subtype4" "subtype2" "subtype3" "subtype2" "subtype4" "subtype1"
[19] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
[25] "subtype2" "subtype1" "subtype3"
 [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [7] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype2"
[13] "subtype4" "subtype2" "subtype3" "subtype2" "subtype4" "subtype1"
[19] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
[25] "subtype2" "subtype1" "subtype3"
D2V2, continuous
D2V3, binary
          cls
clus       0 1
  subtype1 5 2
  subtype2 1 5
  subtype3 2 8
  subtype4 1 3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5    2
  subtype2    1    5
  subtype3    2    8
  subtype4    1    3
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE        5        1        2        1
  MALE          2        5        8        3
D2V4, continuous
[1] "Remove cluster labels:" "subtype2"               "subtype4"              
clus
subtype1 subtype2 subtype3 subtype4 
       5        2        8        2 
 [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [7] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[13] "subtype3"
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1           1                1                 5
  subtype2           0                4                 2
  subtype3           7                2                 1
  subtype4           2                2                 0
D2V5, multiclass
D2V6, binary
          cls
clus       0 1
  subtype1 5 2
  subtype2 3 3
  subtype3 8 2
  subtype4 4 0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5    2
  subtype2    3    3
  subtype3    8    2
  subtype4    4    0
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         5        3        8        4
  YES        2        3        2        0

Clustering(3) Variable = CN_CNMF
D3V1, survival
          sevent
clus2        0   1
  subtype1  87  20
  subtype2  50  31
  subtype3 151  17
subtype1 subtype2 subtype3 
     107       81      168 
subtype1 subtype2 subtype3 
      20       31       17 
$subtype1
TCGA-CS-4938 TCGA-CS-4943 TCGA-CS-5393 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        4.70        18.15        40.18        17.95        12.43         8.48 
TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5281 TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       47.93        46.65        78.28        12.72        27.62        27.02 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A64X TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66G 
       18.84        18.38        10.92        29.62        15.75         3.85 
TCGA-DU-5853 TCGA-DU-5871 TCGA-DU-6399 TCGA-DU-6408 TCGA-DU-7007 TCGA-DU-7008 
       13.38        18.94        65.75       114.08        62.96       156.23 
TCGA-DU-7010 TCGA-DU-7014 TCGA-DU-7299 TCGA-DU-7304 TCGA-DU-8167 TCGA-DU-A5TP 
       14.99       117.40        44.02        23.31        15.48        14.24 
TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A6S7 TCGA-DU-A76O TCGA-DU-A7T8 TCGA-E1-5302 
       15.12         3.65         7.23         7.13       124.50        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5307 TCGA-E1-5322 TCGA-FG-5963 TCGA-FG-6689 
       67.46        41.13        57.93       130.78        17.98        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8188 TCGA-FG-8191 
       24.99        23.97        13.68        14.24        14.96        15.52 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6J3 TCGA-HT-7469 TCGA-HT-7470 
        9.67         7.04         7.04        10.59         7.82         8.81 
TCGA-HT-7474 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 
        3.75         6.54        24.26         6.38         7.10        60.03 
TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7611 TCGA-HT-7676 TCGA-HT-7686 TCGA-HT-7688 
      107.93        17.29        57.60         0.16        42.74        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7693 TCGA-HT-7855 TCGA-HT-7857 TCGA-HT-7873 
       14.96         0.10        17.52        19.23         0.23        23.61 
TCGA-HT-7879 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8013 TCGA-HT-8018 TCGA-HT-8106 
        3.68        11.28        31.43        63.55        21.50         0.10 
TCGA-HT-8111 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A618 
        0.23         3.88        16.04         2.70         1.81         5.33 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7493 TCGA-HW-8319 TCGA-HW-8321 TCGA-HW-A5KM 
        8.32        19.23        35.90         8.61        21.24         6.61 
TCGA-IK-7675 TCGA-P5-A5F1 TCGA-P5-A5F6 TCGA-QH-A65S TCGA-QH-A6XA TCGA-S9-A6TS 
       19.00         5.88         1.28         2.53         0.23        62.17 
TCGA-S9-A6U6 TCGA-S9-A6UA TCGA-S9-A6WG TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IS 
        9.86         5.85        70.55         7.59         3.39         7.92 
TCGA-S9-A7QX TCGA-S9-A7R3 TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A7CF 
        4.04        87.09        35.93        22.59        48.39 

$subtype2
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        7.69        43.89        21.01         6.38        17.69        23.84 
TCGA-DB-5270 TCGA-DB-A4X9 TCGA-DB-A64O TCGA-DH-5140 TCGA-DH-A669 TCGA-DU-5847 
      122.73        30.08        18.84        19.96        30.21        18.02 
TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5872 TCGA-DU-6392 TCGA-DU-6395 
        6.74         8.45         6.81        17.49       211.17        49.02 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7290 
        7.96        11.47         6.54         8.84        90.77        10.36 
TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7301 TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8161 
        7.96        18.94        25.91        41.98         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-A5TR TCGA-DU-A5TT 
        3.98        20.68        19.13        16.96        12.59         4.96 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A76K TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6692 
        5.65        12.20        11.41        32.19        18.77        13.58 
TCGA-FG-7643 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A70Z TCGA-HT-7473 TCGA-HT-7475 
       20.09         0.59         5.26        10.78        16.54        17.42 
TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-8108 TCGA-HT-8110 
        0.49         1.71        16.24        12.23         2.50         4.70 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RC 
       15.72         0.23         0.13         0.07        14.70         5.33 
TCGA-HT-A617 TCGA-HW-8322 TCGA-HW-A5KK TCGA-P5-A5F0 TCGA-QH-A6CS TCGA-QH-A6CV 
       16.14        17.82         7.89         4.11         4.18         2.96 
TCGA-QH-A6X3 TCGA-QH-A6X9 TCGA-QH-A6XC TCGA-S9-A6WM TCGA-S9-A7IQ TCGA-S9-A7IZ 
        0.59         1.91         5.03         9.30        14.27         4.21 
TCGA-S9-A7QW TCGA-S9-A7R2 TCGA-TM-A7C3 
        3.58        10.39        49.45 

$subtype3
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6667 TCGA-CS-6668 
       10.62        64.64         0.10         9.96         7.56         8.02 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5278 
        7.40         6.61        81.96        75.25        72.92        50.17 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-A4XA TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       44.52        36.56        10.29        72.95        12.59        11.01 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       16.80         5.98        16.08        15.42        27.81        14.73 
TCGA-DB-A64W TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66F 
       13.64        31.82        30.31        14.40         8.02         7.79 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5870 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
       14.56        17.46       182.33        15.16        52.11        22.42 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6542 TCGA-DU-7009 
       75.16        46.06         1.22        87.45         7.73       138.28 
TCGA-DU-7011 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7294 TCGA-DU-7300 TCGA-DU-7302 
      105.21        30.67        26.30        94.32        62.01        60.30 
TCGA-DU-7309 TCGA-DU-8164 TCGA-DU-8168 TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S8 
        2.76        21.40        14.17         8.65         2.70         5.98 
TCGA-DU-A76R TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-EZ-7264 
       21.30        79.99       134.27        78.21        95.57        14.33 
TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       47.77        34.36        15.35        17.88        22.55        20.61 
TCGA-FG-8181 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8189 TCGA-FG-A4MT TCGA-FG-A4MX 
       12.95        16.01        20.09        11.87        24.46         3.72 
TCGA-FG-A60K TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A710 TCGA-FG-A713 TCGA-FN-7833 
        6.64         4.21         4.08        22.95         5.23         0.13 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7480 TCGA-HT-7481 
        0.10         6.67         0.13         0.03        75.19        59.18 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7605 
      154.19         4.01         5.03        29.85        23.18         4.57 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7616 TCGA-HT-7620 
        3.16        22.06        45.99        56.09         0.23        14.27 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7687 TCGA-HT-7691 
       16.24         0.76        44.68         6.05         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7856 TCGA-HT-7858 
        2.96         6.90        14.53        39.48        39.09        50.63 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-8010 
       37.15         0.33         0.13         5.33         2.93         1.64 
TCGA-HT-8012 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8113 
        9.40        33.01         6.25         0.46         3.95        29.59 
TCGA-HT-A4DV TCGA-HT-A5RB TCGA-HT-A615 TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 
       10.49         0.10        13.02        29.92        13.45        40.18 
TCGA-HW-7495 TCGA-HW-8320 TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-IK-8125 TCGA-P5-A5EW 
        4.31         8.94        10.55         9.67        42.77         6.71 
TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CY TCGA-QH-A6CZ 
        5.75         4.83         7.79         4.11         2.20         3.16 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        6.31         3.91         4.73        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TZ 
       59.38        69.07        18.77        28.27        28.14        21.63 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UB TCGA-S9-A6WE 
       11.31        15.62        94.62        83.70       103.76        72.59 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WP TCGA-S9-A7IY TCGA-S9-A7J1 
       22.92        70.65        10.88         6.15        12.59         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R8 TCGA-TM-A7C5 
        2.04         8.12        18.21        13.02        31.59        25.32 

subtype1 subtype2 subtype3 
    0.10     0.07     0.03 
subtype1 subtype2 subtype3 
  156.23   211.17   182.33 
subtype1 subtype2 subtype3 
  15.520   12.200   14.645 
[1] "0.1 - 156.2 (15.5)" "0.1 - 211.2 (12.2)" "0.0 - 182.3 (14.6)"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [19] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [67] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [73] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [91] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[109] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[145] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[151] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[163] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[175] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[187] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[199] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[205] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[223] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[235] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[247] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[253] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[259] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[271] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[277] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[283] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[289] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[295] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[301] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[307] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[313] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[325] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[331] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[337] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[343] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[349] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[355] "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [19] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [67] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [73] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [91] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[109] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[145] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[151] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[163] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[175] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[187] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[199] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[205] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[223] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[235] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[247] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[253] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[259] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[271] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[277] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[283] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[289] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[295] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[301] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[307] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[313] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[325] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[331] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[337] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[343] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[349] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[355] "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [19] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [67] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [73] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [91] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[109] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[145] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[151] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[163] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[175] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[187] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[199] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[205] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[223] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[235] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[247] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[253] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[259] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[271] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[277] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[283] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[289] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[295] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[301] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[307] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[313] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[325] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[331] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[337] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[343] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[349] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[355] "subtype1" "subtype1"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 45 63
  subtype2 46 36
  subtype3 74 95
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   45   63
  subtype2   46   36
  subtype3   74   95
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       45       46       74
  MALE         63       36       95
D3V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1          61               30                17
  subtype2          36               27                19
  subtype3          26               42               101
D3V5, multiclass
D3V6, binary
          cls
clus         0   1
  subtype1  29  79
  subtype2  21  61
  subtype3  39 130
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   29   79
  subtype2   21   61
  subtype3   39  130
     clus
vv    subtype1 subtype2 subtype3
  NO        29       21       39
  YES       79       61      130

Clustering(4) Variable = METHLYATION_CNMF
D4V1, survival
          sevent
clus2        0   1
  subtype1 126  26
  subtype2  21  24
  subtype3  43   4
  subtype4 100  10
subtype1 subtype2 subtype3 subtype4 
     152       45       47      110 
subtype1 subtype2 subtype3 subtype4 
      26       24        4       10 
$subtype1
TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-5393 TCGA-CS-6290 TCGA-CS-6665 
        4.70        43.89        18.15        40.18        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5280 
        8.48         7.56        81.96        47.93        46.65        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       78.28        30.08        12.72        27.62        27.02        18.84 
TCGA-DB-A4XF TCGA-DB-A64S TCGA-DB-A64X TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-A66B 
       18.38        15.42        10.92        30.31        14.40        29.62 
TCGA-DH-A66D TCGA-DH-A66G TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5871 
       15.75         3.85        17.46        13.38         6.81        18.94 
TCGA-DU-5872 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6407 
       17.49        49.02        75.16        65.75        87.45        94.52 
TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7014 
      114.08         7.73        62.96       156.23        14.99       117.40 
TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 
       90.77        26.30        44.02        25.91        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8163 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TR 
        2.76        20.68        16.96        15.48        14.24        12.59 
TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A6S7 TCGA-DU-A76O TCGA-DU-A7T8 
       15.12         3.65         5.65         7.23         7.13       124.50 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5322 
       50.14        67.46        41.13        79.99        57.93       130.78 
TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-7636 TCGA-FG-8185 TCGA-FG-8188 
       32.19        14.93        24.99        17.88        14.24        14.96 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L 
       15.52        24.46         3.72         9.67         7.04         7.04 
TCGA-FG-A6J3 TCGA-FN-7833 TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7475 
       10.59         0.13         8.81         0.03        16.54        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
        6.54        24.26         6.38        60.03       154.19         4.01 
TCGA-HT-7601 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7609 TCGA-HT-7610 
        5.03        23.18       107.93        17.29        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7676 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7689 
       57.60         0.16         6.05        42.74        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7693 TCGA-HT-7855 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7879 
        0.10        17.52        19.23        50.63        23.61         3.68 
TCGA-HT-7884 TCGA-HT-8013 TCGA-HT-8108 TCGA-HT-8111 TCGA-HT-8114 TCGA-HT-8563 
       11.28        63.55         2.50         0.23         3.88        16.04 
TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A618 TCGA-HW-7489 TCGA-HW-7490 
        0.10         2.70         1.81         5.33         8.32        19.23 
TCGA-HW-7493 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-A5KL TCGA-HW-A5KM 
       35.90         8.61         8.94        21.24         9.67         6.61 
TCGA-IK-7675 TCGA-P5-A5EW TCGA-P5-A5F1 TCGA-QH-A65S TCGA-QH-A6X3 TCGA-QH-A6X9 
       19.00         6.71         5.88         2.53         0.59         1.91 
TCGA-QH-A6XA TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TZ TCGA-S9-A6U1 
        0.23        62.17        69.07        18.77        21.63        11.31 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IS 
        9.86        94.62        83.70         7.59         3.39         7.92 
TCGA-S9-A7IZ TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7R3 TCGA-S9-A7R8 TCGA-TM-A7C4 
        4.21         3.58         4.04        87.09        31.59        35.93 
TCGA-TM-A7CA TCGA-TM-A7CF 
       22.59        48.39 

$subtype2
TCGA-CS-4941 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-DH-5140 
        7.69        21.01         6.38        17.69        23.84        19.96 
TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-6392 TCGA-DU-6403 TCGA-DU-6404 
       18.02         6.74         8.45       211.17        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-7006 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7290 
       19.89        16.83        11.47         6.54         8.84        10.36 
TCGA-DU-7292 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 TCGA-DU-A5TT TCGA-DU-A5TY 
        7.96         5.10        23.74        19.13         4.96        12.20 
TCGA-DU-A76K TCGA-FG-6692 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A70Z TCGA-HT-7469 
       11.41        13.58         0.59         5.26        10.78         7.82 
TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-8110 TCGA-HT-8564 
        0.49         1.71        16.24        12.23         4.70        15.72 
TCGA-HT-A4DS TCGA-HT-A5RA TCGA-HT-A5RC TCGA-QH-A6CV TCGA-QH-A6XC TCGA-S9-A6UA 
        0.23        14.70         5.33         2.96         5.03         5.85 
TCGA-S9-A6WM TCGA-S9-A7R2 TCGA-TM-A7C3 
        9.30        10.39        49.45 

$subtype3
TCGA-CS-4944 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-A64O 
       10.62         7.40       122.73        72.92        50.17        18.84 
TCGA-DU-7298 TCGA-DU-8162 TCGA-FG-5963 TCGA-FG-6688 TCGA-FG-6691 TCGA-FG-7643 
       18.94         3.98        17.98        18.77        23.97        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8189 TCGA-FG-A713 TCGA-HT-7467 TCGA-HT-7474 
       12.95        13.68        11.87         5.23         0.10         3.75 
TCGA-HT-7479 TCGA-HT-7602 TCGA-HT-7607 TCGA-HT-7680 TCGA-HT-7691 TCGA-HT-7854 
        7.10        29.85         3.16         0.76         0.10        39.48 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7874 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7902 
       39.09         0.23        37.15         5.33         2.93        31.43 
TCGA-HT-8010 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8113 
        1.64        21.50        33.01         0.10         0.46        29.59 
TCGA-HT-8558 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A617 TCGA-HT-A61A TCGA-HW-A5KK 
        1.71        10.49         0.13        16.14         6.38         7.89 
TCGA-P5-A5F6 TCGA-QH-A6CS TCGA-S9-A6WG TCGA-S9-A6WI TCGA-S9-A7IQ 
        1.28         4.18        70.55        70.65        14.27 

$subtype4
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-CS-6670 TCGA-DB-5274 
       64.64         0.10         9.96         8.02         6.61        75.25 
TCGA-DB-5279 TCGA-DB-A4XA TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64P 
       44.52        10.29        72.95        12.59        11.01        16.80 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DH-5141 
        5.98        16.08        27.81        14.73        13.64        31.82 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66F TCGA-DU-5849 TCGA-DU-5870 TCGA-DU-5874 
        8.02        30.21         7.79        14.56       182.33        15.16 
TCGA-DU-6393 TCGA-DU-6400 TCGA-DU-6410 TCGA-DU-7009 TCGA-DU-7018 TCGA-DU-7294 
       52.11         1.22         7.96       138.28        30.67        94.32 
TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-8164 TCGA-DU-8168 TCGA-DU-A6S2 TCGA-DU-A6S3 
       62.01        60.30        21.40        14.17         8.65         2.70 
TCGA-DU-A6S8 TCGA-DU-A76R TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-EZ-7264 
        5.98        21.30       134.27        78.21        95.57        14.33 
TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-7634 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       47.77        34.36        15.35        40.08        22.55        20.61 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A710 
       16.01        20.09         6.64         4.21         4.08        22.95 
TCGA-HT-7468 TCGA-HT-7471 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7605 TCGA-HT-7616 
        6.67         0.13        75.19        59.18         4.57         0.23 
TCGA-HT-7620 TCGA-HT-7677 TCGA-HT-7681 TCGA-HT-7687 TCGA-HT-7692 TCGA-HT-7694 
       14.27        16.24        44.68         0.10         2.96         6.90 
TCGA-HT-7695 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-8012 TCGA-HT-8105 TCGA-HT-8109 
       14.53         0.33         0.13         9.40         6.25         3.95 
TCGA-HT-A5R9 TCGA-HT-A615 TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 TCGA-HW-7495 
        0.07        13.02        29.92        13.45        40.18         4.31 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-IK-8125 TCGA-P5-A5F0 TCGA-QH-A65R TCGA-QH-A65V 
       17.82        10.55        42.77         4.11         5.75         4.83 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-QH-A6X5 
        7.79         4.11         2.20         3.16         6.31         3.91 
TCGA-QH-A6X8 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-S9-A6TW 
        4.73        88.83        94.03        32.65        59.38        28.27 
TCGA-S9-A6TX TCGA-S9-A6U2 TCGA-S9-A6UB TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A6WL 
       28.14        15.62       103.76        72.59        22.92        10.88 
TCGA-S9-A6WP TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QY 
        6.15        12.59         8.19         2.04         8.12        18.21 
TCGA-S9-A7QZ TCGA-TM-A7C5 
       13.02        25.32 

subtype1 subtype2 subtype3 subtype4 
    0.03     0.23     0.10     0.07 
subtype1 subtype2 subtype3 subtype4 
  156.23   211.17   122.73   182.33 
subtype1 subtype2 subtype3 subtype4 
   17.44    10.39    11.87    14.30 
[1] "0.0 - 156.2 (17.4)" "0.2 - 211.2 (10.4)" "0.1 - 122.7 (11.9)"
[4] "0.1 - 182.3 (14.3)"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
 [19] "subtype3" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype4" "subtype1" "subtype1"
 [31] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
 [43] "subtype4" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
 [49] "subtype1" "subtype2" "subtype4" "subtype1" "subtype1" "subtype4"
 [55] "subtype4" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
 [61] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [67] "subtype4" "subtype1" "subtype1" "subtype4" "subtype2" "subtype4"
 [73] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
 [85] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
 [91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
 [97] "subtype2" "subtype2" "subtype4" "subtype3" "subtype1" "subtype4"
[103] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype2" "subtype3" "subtype1" "subtype4" "subtype2" "subtype1"
[115] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
[121] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype1"
[127] "subtype4" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype4"
[139] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[151] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
[157] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype1"
[163] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[169] "subtype1" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[175] "subtype1" "subtype2" "subtype4" "subtype3" "subtype1" "subtype3"
[181] "subtype4" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
[187] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[193] "subtype4" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[199] "subtype3" "subtype1" "subtype1" "subtype4" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
[211] "subtype4" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
[217] "subtype1" "subtype1" "subtype1" "subtype3" "subtype4" "subtype1"
[223] "subtype4" "subtype4" "subtype3" "subtype1" "subtype3" "subtype3"
[229] "subtype1" "subtype2" "subtype1" "subtype3" "subtype4" "subtype4"
[235] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[241] "subtype3" "subtype2" "subtype4" "subtype1" "subtype3" "subtype3"
[247] "subtype2" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
[253] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[259] "subtype2" "subtype2" "subtype3" "subtype3" "subtype4" "subtype2"
[265] "subtype1" "subtype2" "subtype1" "subtype4" "subtype1" "subtype3"
[271] "subtype1" "subtype3" "subtype4" "subtype4" "subtype1" "subtype1"
[277] "subtype4" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[283] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[289] "subtype4" "subtype1" "subtype4" "subtype1" "subtype3" "subtype4"
[295] "subtype1" "subtype4" "subtype4" "subtype4" "subtype3" "subtype2"
[301] "subtype4" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[307] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype4"
[313] "subtype4" "subtype1" "subtype1" "subtype1" "subtype4" "subtype4"
[319] "subtype1" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[325] "subtype2" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[331] "subtype4" "subtype2" "subtype1" "subtype4" "subtype1" "subtype3"
[337] "subtype1" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[343] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype1"
[349] "subtype1" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
 [19] "subtype3" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype4" "subtype1" "subtype1"
 [31] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
 [43] "subtype4" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
 [49] "subtype1" "subtype2" "subtype4" "subtype1" "subtype1" "subtype4"
 [55] "subtype4" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
 [61] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [67] "subtype4" "subtype1" "subtype1" "subtype4" "subtype2" "subtype4"
 [73] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
 [85] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
 [91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
 [97] "subtype2" "subtype2" "subtype4" "subtype3" "subtype1" "subtype4"
[103] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype2" "subtype3" "subtype1" "subtype4" "subtype2" "subtype1"
[115] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
[121] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype1"
[127] "subtype4" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype4"
[139] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[151] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
[157] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype1"
[163] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[169] "subtype1" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[175] "subtype1" "subtype2" "subtype4" "subtype3" "subtype1" "subtype3"
[181] "subtype4" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
[187] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[193] "subtype4" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[199] "subtype3" "subtype1" "subtype1" "subtype4" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
[211] "subtype4" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
[217] "subtype1" "subtype1" "subtype1" "subtype3" "subtype4" "subtype1"
[223] "subtype4" "subtype4" "subtype3" "subtype1" "subtype3" "subtype3"
[229] "subtype1" "subtype2" "subtype1" "subtype3" "subtype4" "subtype4"
[235] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[241] "subtype3" "subtype2" "subtype4" "subtype1" "subtype3" "subtype3"
[247] "subtype2" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
[253] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[259] "subtype2" "subtype2" "subtype3" "subtype3" "subtype4" "subtype2"
[265] "subtype1" "subtype2" "subtype1" "subtype4" "subtype1" "subtype3"
[271] "subtype1" "subtype3" "subtype4" "subtype4" "subtype1" "subtype1"
[277] "subtype4" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[283] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[289] "subtype4" "subtype1" "subtype4" "subtype1" "subtype3" "subtype4"
[295] "subtype1" "subtype4" "subtype4" "subtype4" "subtype3" "subtype2"
[301] "subtype4" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[307] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype4"
[313] "subtype4" "subtype1" "subtype1" "subtype1" "subtype4" "subtype4"
[319] "subtype1" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[325] "subtype2" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[331] "subtype4" "subtype2" "subtype1" "subtype4" "subtype1" "subtype3"
[337] "subtype1" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[343] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype1"
[349] "subtype1" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
 [19] "subtype3" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype4" "subtype1" "subtype1"
 [31] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
 [43] "subtype4" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
 [49] "subtype1" "subtype2" "subtype4" "subtype1" "subtype1" "subtype4"
 [55] "subtype4" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
 [61] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [67] "subtype4" "subtype1" "subtype1" "subtype4" "subtype2" "subtype4"
 [73] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
 [85] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
 [91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
 [97] "subtype2" "subtype2" "subtype4" "subtype3" "subtype1" "subtype4"
[103] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype2" "subtype3" "subtype1" "subtype4" "subtype2" "subtype1"
[115] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
[121] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype1"
[127] "subtype4" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype4"
[139] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[151] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
[157] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype1"
[163] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[169] "subtype1" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[175] "subtype1" "subtype2" "subtype4" "subtype3" "subtype1" "subtype3"
[181] "subtype4" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
[187] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[193] "subtype4" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[199] "subtype3" "subtype1" "subtype1" "subtype4" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
[211] "subtype4" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
[217] "subtype1" "subtype1" "subtype1" "subtype3" "subtype4" "subtype1"
[223] "subtype4" "subtype4" "subtype3" "subtype1" "subtype3" "subtype3"
[229] "subtype1" "subtype2" "subtype1" "subtype3" "subtype4" "subtype4"
[235] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[241] "subtype3" "subtype2" "subtype4" "subtype1" "subtype3" "subtype3"
[247] "subtype2" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
[253] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[259] "subtype2" "subtype2" "subtype3" "subtype3" "subtype4" "subtype2"
[265] "subtype1" "subtype2" "subtype1" "subtype4" "subtype1" "subtype3"
[271] "subtype1" "subtype3" "subtype4" "subtype4" "subtype1" "subtype1"
[277] "subtype4" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[283] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[289] "subtype4" "subtype1" "subtype4" "subtype1" "subtype3" "subtype4"
[295] "subtype1" "subtype4" "subtype4" "subtype4" "subtype3" "subtype2"
[301] "subtype4" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[307] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype4"
[313] "subtype4" "subtype1" "subtype1" "subtype1" "subtype4" "subtype4"
[319] "subtype1" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[325] "subtype2" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[331] "subtype4" "subtype2" "subtype1" "subtype4" "subtype1" "subtype3"
[337] "subtype1" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[343] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype1"
[349] "subtype1" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 67 86
  subtype2 25 20
  subtype3 25 23
  subtype4 50 61
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   67   86
  subtype2   25   20
  subtype3   25   23
  subtype4   50   61
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       67       25       25       50
  MALE         86       20       23       61
D4V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1          77               52                24
  subtype2          27               10                 8
  subtype3          16               13                19
  subtype4           2               23                86
D4V5, multiclass
D4V6, binary
          cls
clus         0   1
  subtype1  48 105
  subtype2  12  33
  subtype3   9  39
  subtype4  16  95
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   48  105
  subtype2   12   33
  subtype3    9   39
  subtype4   16   95
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        48       12        9       16
  YES      105       33       39       95

Clustering(5) Variable = RPPA_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 43  5
  subtype2 32 29
  subtype3 58 10
  subtype4 60 11
subtype1 subtype2 subtype3 subtype4 
      48       61       68       71 
subtype1 subtype2 subtype3 subtype4 
       5       29       10       11 
$subtype1
TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6665 TCGA-DB-5273 
        4.70        43.89        17.69        23.84        12.43        81.96 
TCGA-DB-5276 TCGA-DB-A4XF TCGA-DB-A4XH TCGA-DH-5143 TCGA-DU-5874 TCGA-DU-6395 
       72.92        18.38        12.59        14.40        15.16        49.02 
TCGA-DU-7304 TCGA-DU-8163 TCGA-DU-A5TR TCGA-DU-A5TS TCGA-E1-5302 TCGA-FG-6688 
       23.31        20.68        12.59        15.12        50.14        18.77 
TCGA-FG-6691 TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8191 
       23.97        13.68        16.01        20.09        14.96        15.52 
TCGA-FG-A4MW TCGA-FG-A60J TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7485 TCGA-HT-7602 
        5.26         7.04         7.10        60.03         4.01        29.85 
TCGA-HT-7611 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7691 
       57.60        14.27         0.16         0.76        44.68         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7854 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-8111 
        2.96        17.52        39.48        23.61         3.68         0.23 
TCGA-HT-8114 TCGA-HT-A5R5 TCGA-HW-8319 TCGA-P5-A5EW TCGA-P5-A5F1 TCGA-P5-A5F6 
        3.88         0.13         8.61         6.71         5.88         1.28 

$subtype2
TCGA-CS-4943 TCGA-CS-5397 TCGA-CS-6666 TCGA-DB-5277 TCGA-DB-A4XG TCGA-DH-5140 
       18.15         6.38         8.48        46.65        72.95        19.96 
TCGA-DH-5142 TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-6393 
       30.31        18.02         6.74         8.45         6.81        52.11 
TCGA-DU-6394 TCGA-DU-6396 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
       22.42        75.16         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       16.83       114.08         7.96         7.73        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7290 TCGA-DU-7301 
      156.23        14.99         6.54         8.84        10.36        25.91 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 TCGA-DU-8168 TCGA-DU-A5TT TCGA-DU-A5TU 
        5.10        23.74        19.13        14.17         4.96         3.65 
TCGA-DU-A5TY TCGA-E1-5304 TCGA-E1-5318 TCGA-E1-5322 TCGA-FG-7636 TCGA-FG-8185 
       12.20        41.13        78.21       130.78        17.88        14.24 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-HT-7469 TCGA-HT-7477 TCGA-HT-7604 TCGA-HT-7606 
       24.46         0.59         7.82        24.26       107.93        17.29 
TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
        0.23         0.49         1.71        16.24         9.40        63.55 
TCGA-HT-8104 TCGA-HT-A5R9 TCGA-HW-7491 TCGA-HW-8322 TCGA-HW-A5KK TCGA-HW-A5KM 
       12.23         0.07        40.18        17.82         7.89         6.61 
TCGA-IK-7675 
       19.00 

$subtype3
TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-CS-6670 
       10.62        40.18         0.10         9.96         8.02         6.61 
TCGA-DB-5275 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XC 
       47.93        44.52        36.56        78.28        10.29        27.62 
TCGA-DB-A4XD TCGA-DH-5141 TCGA-DH-5144 TCGA-DU-5853 TCGA-DU-5870 TCGA-DU-5871 
       27.02        31.82         8.02        13.38       182.33        18.94 
TCGA-DU-5872 TCGA-DU-6392 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6407 
       17.49       211.17        46.06        65.75        87.45        94.52 
TCGA-DU-7011 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7306 
      105.21       117.40        90.77        30.67        26.30        41.98 
TCGA-DU-8167 TCGA-DU-A5TW TCGA-E1-5303 TCGA-E1-5319 TCGA-EZ-7264 TCGA-FG-5964 
       15.48         5.65        67.46        95.57        14.33        34.36 
TCGA-FG-7634 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-A4MX TCGA-FG-A4MY 
       15.35        40.08        22.55        20.61         3.72         9.67 
TCGA-HT-7468 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7483 
        6.67         0.03        16.54         6.54         6.38       154.19 
TCGA-HT-7601 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7616 TCGA-HT-7677 TCGA-HT-7684 
        5.03        22.06        45.99         0.23        16.24         6.05 
TCGA-HT-7686 TCGA-HT-7689 TCGA-HT-7855 TCGA-HT-7858 TCGA-HT-7875 TCGA-HT-8105 
       42.74        14.96        19.23        50.63         0.33         6.25 
TCGA-HT-8106 TCGA-HT-8110 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-8320 TCGA-HW-8321 
        0.10         4.70         8.32        19.23         8.94        21.24 
TCGA-HW-A5KJ TCGA-IK-8125 
       10.55        42.77 

$subtype4
TCGA-CS-5390 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5274 TCGA-DB-5278 TCGA-DB-A4X9 
       64.64         7.40       122.73        75.25        50.17        30.08 
TCGA-DB-A4XB TCGA-DB-A4XE TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-6400 TCGA-DU-7009 
       12.72        18.84        14.56        17.46         1.22       138.28 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7309 
        7.96        94.32        18.94        62.01        60.30         2.76 
TCGA-DU-8162 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-A5TP TCGA-E1-5305 TCGA-E1-5307 
        3.98        21.40        16.96        14.24        79.99        57.93 
TCGA-E1-5311 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 
      134.27        47.77        17.98        32.19        14.93        24.99 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8189 TCGA-HT-7467 TCGA-HT-7470 TCGA-HT-7471 
       20.09        12.95        11.87         0.10         8.81         0.13 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7603 TCGA-HT-7605 
        3.75        17.42        75.19        59.18        23.18         4.57 
TCGA-HT-7607 TCGA-HT-7610 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7690 TCGA-HT-7694 
        3.16        56.09         0.10        31.69         0.10         6.90 
TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7874 TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 
       14.53        39.09        37.15         0.13         5.33         2.93 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8107 
       11.28        31.43         1.64        21.50        33.01         0.46 
TCGA-HT-8109 TCGA-HT-8113 TCGA-HT-8558 TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5RB 
        3.95        29.59         1.71        15.72        10.49         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7493 TCGA-HW-7495 TCGA-P5-A5F0 
       29.92        13.45        35.90         4.31         4.11 

subtype1 subtype2 subtype3 subtype4 
    0.10     0.07     0.03     0.10 
subtype1 subtype2 subtype3 subtype4 
   81.96   156.23   211.17   138.28 
subtype1 subtype2 subtype3 subtype4 
   15.04    16.24    19.23    16.96 
[1] "0.1 - 82.0 (15.0)"  "0.1 - 156.2 (16.2)" "0.0 - 211.2 (19.2)"
[4] "0.1 - 138.3 (17.0)"
  [1] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype2" "subtype3" "subtype4" "subtype3" "subtype4" "subtype1"
 [19] "subtype4" "subtype3" "subtype1" "subtype2" "subtype4" "subtype3"
 [25] "subtype3" "subtype3" "subtype4" "subtype3" "subtype4" "subtype3"
 [31] "subtype3" "subtype4" "subtype1" "subtype2" "subtype1" "subtype2"
 [37] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype4"
 [43] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype3" "subtype3" "subtype4" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype4" "subtype4"
 [85] "subtype4" "subtype4" "subtype2" "subtype4" "subtype1" "subtype3"
 [91] "subtype4" "subtype2" "subtype2" "subtype4" "subtype1" "subtype4"
 [97] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype1"
[103] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype4" "subtype4" "subtype3"
[121] "subtype4" "subtype1" "subtype4" "subtype4" "subtype1" "subtype3"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype4" "subtype4"
[133] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype4"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
[151] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype4" "subtype4" "subtype1" "subtype3"
[163] "subtype1" "subtype3" "subtype1" "subtype4" "subtype2" "subtype4"
[169] "subtype2" "subtype4" "subtype3" "subtype3" "subtype4" "subtype1"
[175] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[181] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype4"
[187] "subtype1" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
[193] "subtype3" "subtype4" "subtype2" "subtype3" "subtype2" "subtype1"
[199] "subtype4" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[205] "subtype2" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[211] "subtype2" "subtype4" "subtype4" "subtype2" "subtype3" "subtype3"
[217] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
[223] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype4"
[229] "subtype4" "subtype4" "subtype3" "subtype3" "subtype2" "subtype4"
[235] "subtype4" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
[247] "subtype1" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype2" "subtype3" "subtype4" "subtype3" "subtype4" "subtype1"
 [19] "subtype4" "subtype3" "subtype1" "subtype2" "subtype4" "subtype3"
 [25] "subtype3" "subtype3" "subtype4" "subtype3" "subtype4" "subtype3"
 [31] "subtype3" "subtype4" "subtype1" "subtype2" "subtype1" "subtype2"
 [37] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype4"
 [43] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype3" "subtype3" "subtype4" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype4" "subtype4"
 [85] "subtype4" "subtype4" "subtype2" "subtype4" "subtype1" "subtype3"
 [91] "subtype4" "subtype2" "subtype2" "subtype4" "subtype1" "subtype4"
 [97] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype1"
[103] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype4" "subtype4" "subtype3"
[121] "subtype4" "subtype1" "subtype4" "subtype4" "subtype1" "subtype3"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype4" "subtype4"
[133] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype4"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
[151] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype4" "subtype4" "subtype1" "subtype3"
[163] "subtype1" "subtype3" "subtype1" "subtype4" "subtype2" "subtype4"
[169] "subtype2" "subtype4" "subtype3" "subtype3" "subtype4" "subtype1"
[175] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[181] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype4"
[187] "subtype1" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
[193] "subtype3" "subtype4" "subtype2" "subtype3" "subtype2" "subtype1"
[199] "subtype4" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[205] "subtype2" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[211] "subtype2" "subtype4" "subtype4" "subtype2" "subtype3" "subtype3"
[217] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
[223] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype4"
[229] "subtype4" "subtype4" "subtype3" "subtype3" "subtype2" "subtype4"
[235] "subtype4" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
[247] "subtype1" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype2" "subtype3" "subtype4" "subtype3" "subtype4" "subtype1"
 [19] "subtype4" "subtype3" "subtype1" "subtype2" "subtype4" "subtype3"
 [25] "subtype3" "subtype3" "subtype4" "subtype3" "subtype4" "subtype3"
 [31] "subtype3" "subtype4" "subtype1" "subtype2" "subtype1" "subtype2"
 [37] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype4"
 [43] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype3" "subtype3" "subtype4" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype4" "subtype4"
 [85] "subtype4" "subtype4" "subtype2" "subtype4" "subtype1" "subtype3"
 [91] "subtype4" "subtype2" "subtype2" "subtype4" "subtype1" "subtype4"
 [97] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype1"
[103] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype4" "subtype4" "subtype3"
[121] "subtype4" "subtype1" "subtype4" "subtype4" "subtype1" "subtype3"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype4" "subtype4"
[133] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype4"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
[151] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype4" "subtype4" "subtype1" "subtype3"
[163] "subtype1" "subtype3" "subtype1" "subtype4" "subtype2" "subtype4"
[169] "subtype2" "subtype4" "subtype3" "subtype3" "subtype4" "subtype1"
[175] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[181] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype4"
[187] "subtype1" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
[193] "subtype3" "subtype4" "subtype2" "subtype3" "subtype2" "subtype1"
[199] "subtype4" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[205] "subtype2" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[211] "subtype2" "subtype4" "subtype4" "subtype2" "subtype3" "subtype3"
[217] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
[223] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype4"
[229] "subtype4" "subtype4" "subtype3" "subtype3" "subtype2" "subtype4"
[235] "subtype4" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
[247] "subtype1" "subtype1"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1 18 30
  subtype2 33 28
  subtype3 20 48
  subtype4 36 35
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   18   30
  subtype2   33   28
  subtype3   20   48
  subtype4   36   35
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       18       33       20       36
  MALE         30       28       48       35
D5V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1          17               21                10
  subtype2          30               11                20
  subtype3          19               21                28
  subtype4          13               17                41
D5V5, multiclass
D5V6, binary
          cls
clus        0  1
  subtype1 15 33
  subtype2 20 41
  subtype3 30 38
  subtype4 19 52
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   33
  subtype2   20   41
  subtype3   30   38
  subtype4   19   52
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        15       20       30       19
  YES       33       41       38       52

Clustering(6) Variable = RPPA_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1  6  1
  subtype2 89 38
  subtype3 98 16
subtype1 subtype2 subtype3 
       7      127      114 
subtype1 subtype2 subtype3 
       1       38       16 
$subtype1
TCGA-E1-5303 TCGA-HT-7471 TCGA-HT-7478 TCGA-HT-7480 TCGA-HT-7874 TCGA-HT-8105 
       67.46         0.13         6.38        75.19        37.15         6.25 
TCGA-HW-7489 
        8.32 

$subtype2
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-5397 
       18.15        10.62        40.18         0.10         9.96         6.38 
TCGA-CS-6188 TCGA-CS-6666 TCGA-CS-6668 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5277 
       23.84         8.48         8.02        81.96        47.93        46.65 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XC TCGA-DB-A4XD 
       44.52        36.56        78.28        10.29        27.62        27.02 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5144 
       18.38        72.95        19.96        31.82        30.31         8.02 
TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
       18.02         6.74         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6396 
       17.49        15.16       211.17        52.11        22.42        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7011 TCGA-DU-7012 
        7.73        11.47        62.96       156.23       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        8.84       117.40        90.77        30.67        26.30        10.36 
TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 
       25.91        23.31        41.98         5.10        23.74        19.13 
TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-E1-5302 
       12.59         4.96         3.65         5.65        12.20        50.14 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-EZ-7264 TCGA-FG-5964 TCGA-FG-6691 
       78.21        95.57       130.78        14.33        34.36        23.97 
TCGA-FG-7637 TCGA-FG-8185 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       40.08        14.24        24.46         0.59         5.26         3.72 
TCGA-FG-A4MY TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7476 
        9.67         6.67         7.82         0.03        16.54         6.54 
TCGA-HT-7477 TCGA-HT-7483 TCGA-HT-7601 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7608 
       24.26       154.19         5.03       107.93        17.29        22.06 
TCGA-HT-7609 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7677 TCGA-HT-7684 TCGA-HT-7686 
       45.99        57.60         0.23        16.24         6.05        42.74 
TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7855 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
        0.10        17.52        19.23         0.23        50.63         0.49 
TCGA-HT-7875 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8104 TCGA-HT-8106 
        0.33         1.71        16.24         9.40        12.23         0.10 
TCGA-HT-8110 TCGA-HT-8114 TCGA-HT-A5R9 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-8320 
        4.70         3.88         0.07        19.23        40.18         8.94 
TCGA-HW-8321 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       21.24        10.55         7.89         6.61        19.00        42.77 
TCGA-P5-A5F6 
        1.28 

$subtype3
TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-5390 TCGA-CS-6186 TCGA-CS-6665 TCGA-CS-6669 
        4.70        43.89        64.64        17.69        12.43         7.40 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-A4X9 
        6.61       122.73        75.25        72.92        50.17        30.08 
TCGA-DB-A4XB TCGA-DB-A4XE TCGA-DB-A4XH TCGA-DH-5143 TCGA-DU-5849 TCGA-DU-5851 
       12.72        18.84        12.59        14.40        14.56        17.46 
TCGA-DU-5853 TCGA-DU-6395 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7292 TCGA-DU-7294 
       13.38        49.02       138.28        14.99         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 
       18.94        62.01        60.30         2.76         3.98        20.68 
TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TS 
       21.40        16.96        15.48        14.17        14.24        15.12 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-FG-5962 TCGA-FG-5963 
       41.13        79.99        57.93       134.27        47.77        17.98 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-7634 TCGA-FG-7636 
       32.19        18.77        14.93        24.99        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8186 
       22.55        20.61        20.09        12.95        13.68        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A60J TCGA-HT-7467 
       20.09        14.96        11.87        15.52         7.04         0.10 
TCGA-HT-7470 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7479 TCGA-HT-7481 TCGA-HT-7482 
        8.81         3.75        17.42         7.10        59.18        60.03 
TCGA-HT-7485 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7610 
        4.01        29.85        23.18         4.57         3.16        56.09 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7687 TCGA-HT-7688 
       14.27         0.16         0.76        44.68         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
       14.96         0.10         2.96         6.90        14.53        39.48 
TCGA-HT-7856 TCGA-HT-7873 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       39.09        23.61         0.13         3.68         5.33         2.93 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8013 TCGA-HT-8018 TCGA-HT-8019 
       11.28        31.43         1.64        63.55        21.50        33.01 
TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8558 TCGA-HT-8564 
        0.46         3.95         0.23        29.59         1.71        15.72 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5RB TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7493 
       10.49         0.13         0.10        29.92        13.45        35.90 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8322 TCGA-P5-A5EW TCGA-P5-A5F0 TCGA-P5-A5F1 
        4.31         8.61        17.82         6.71         4.11         5.88 

subtype1 subtype2 subtype3 
    0.13     0.03     0.10 
subtype1 subtype2 subtype3 
   75.19   211.17   138.28 
subtype1 subtype2 subtype3 
   8.320   18.020   15.235 
[1] "0.1 - 75.2 (8.3)"   "0.0 - 211.2 (18.0)" "0.1 - 138.3 (15.2)"
  [1] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[157] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[175] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[181] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[205] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[211] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[217] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[229] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[235] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[247] "subtype3" "subtype2"
  [1] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[157] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[175] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[181] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[205] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[211] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[217] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[229] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[235] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[247] "subtype3" "subtype2"
  [1] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[157] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[175] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[181] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[205] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[211] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[217] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[229] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[235] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[247] "subtype3" "subtype2"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1  2  5
  subtype2 53 74
  subtype3 52 62
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2    5
  subtype2   53   74
  subtype3   52   62
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        2       53       52
  MALE          5       74       62
D6V4, continuous
[1] "Remove cluster labels:" "subtype1"              
clus
subtype1 subtype2 subtype3 
       1       56       52 
  [1] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [49] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [55] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1           2                1                 4
  subtype2          50               33                44
  subtype3          27               36                51
D6V5, multiclass
D6V6, binary
          cls
clus        0  1
  subtype1  4  3
  subtype2 46 81
  subtype3 34 80
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4    3
  subtype2   46   81
  subtype3   34   80
     clus
vv    subtype1 subtype2 subtype3
  NO         4       46       34
  YES        3       81       80

Clustering(7) Variable = MRNASEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 75 15
  subtype2 40 24
  subtype3 64  9
  subtype4 89 15
  subtype5  2  5
  subtype6 18  0
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
      90       64       73      104        7       18 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
      15       24        9       15        5        0 
$subtype1
TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        4.70        43.89        18.15        17.95         8.48         7.56 
TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XD TCGA-DB-A64S 
       81.96        47.93        36.56        30.08        27.02        15.42 
TCGA-DB-A64X TCGA-DH-5142 TCGA-DH-A66B TCGA-DH-A66D TCGA-DU-5853 TCGA-DU-5855 
       10.92        30.31        29.62        15.75        13.38         6.81 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6395 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6407 
       18.94        17.49        49.02        65.75        87.45        94.52 
TCGA-DU-6408 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7306 
      114.08       117.40        90.77        44.02        25.91        41.98 
TCGA-DU-8163 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TW TCGA-DU-A6S7 TCGA-DU-A76O 
       20.68        16.96        15.48         5.65         7.23         7.13 
TCGA-DU-A7T8 TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5322 TCGA-FG-5965 TCGA-FG-6690 
      124.50        50.14        67.46       130.78        32.19        24.99 
TCGA-FG-6691 TCGA-FG-7636 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8188 TCGA-FG-8191 
       23.97        17.88        13.68        14.24        14.96        15.52 
TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FN-7833 
       24.46         3.72         9.67         7.04         7.04         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7485 
        0.03        16.54         6.38         7.10        60.03         4.01 
TCGA-HT-7604 TCGA-HT-7609 TCGA-HT-7611 TCGA-HT-7676 TCGA-HT-7693 TCGA-HT-7855 
      107.93        45.99        57.60         0.16        17.52        19.23 
TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-8013 TCGA-HT-8108 TCGA-HT-8114 
       50.63        23.61         3.68        63.55         2.50         3.88 
TCGA-HW-7490 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-A5KL TCGA-HW-A5KM TCGA-P5-A5EW 
       19.23         8.94        21.24         9.67         6.61         6.71 
TCGA-P5-A5F1 TCGA-QH-A6X3 TCGA-S9-A6TU TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U9 
        5.88         0.59        69.07        21.63        11.31        83.70 
TCGA-S9-A6WG TCGA-S9-A6WO TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7R3 TCGA-S9-A7R8 
       70.55         7.59         3.58         4.04        87.09        31.59 

$subtype2
TCGA-CS-4941 TCGA-CS-4944 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6665 TCGA-DB-A64O 
        7.69        10.62        17.69        23.84        12.43        18.84 
TCGA-DH-5140 TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-6392 TCGA-DU-6396 
       19.96        18.02         6.74         8.45       211.17        75.16 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-7006 
        7.04        11.64       133.74        19.89        16.83        11.47 
TCGA-DU-7007 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7290 TCGA-DU-8158 TCGA-DU-8161 
       62.96         6.54         8.84        10.36         5.10        23.74 
TCGA-DU-8165 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TY 
       19.13        14.24        12.59         4.96         3.65        12.20 
TCGA-FG-5963 TCGA-FG-6688 TCGA-FG-6692 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A6J3 
       17.98        18.77        13.58         0.59         5.26        10.59 
TCGA-FG-A70Z TCGA-HT-7469 TCGA-HT-7601 TCGA-HT-7680 TCGA-HT-7686 TCGA-HT-7691 
       10.78         7.82         5.03         0.76        42.74         0.10 
TCGA-HT-7854 TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8104 
       39.48         0.23         0.49         1.71        16.24        12.23 
TCGA-HT-8106 TCGA-HT-8110 TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A5RA TCGA-HT-A5RC 
        0.10         4.70        16.04         0.23        14.70         5.33 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HW-A5KK TCGA-P5-A5F6 TCGA-QH-A6CV TCGA-S9-A6TV 
       16.14         5.33         7.89         1.28         2.96        18.77 
TCGA-S9-A6UA TCGA-S9-A6WM TCGA-S9-A7R2 TCGA-TM-A7C3 
        5.85         9.30        10.39        49.45 

$subtype3
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-DB-5274 TCGA-DB-A4XA 
       64.64         0.10         9.96         8.02        75.25        10.29 
TCGA-DB-A4XH TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64U TCGA-DH-5141 
       12.59        16.80         5.98        16.08        27.81        31.82 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66F TCGA-DU-5870 TCGA-DU-5874 TCGA-DU-6393 
        8.02        30.21         7.79       182.33        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-7018 TCGA-DU-7294 TCGA-DU-8168 
       22.42        46.06         1.22        30.67        94.32        14.17 
TCGA-DU-A6S8 TCGA-E1-5318 TCGA-E1-5319 TCGA-EZ-7264 TCGA-FG-7634 TCGA-FG-7637 
        5.98        78.21        95.57        14.33        15.35        40.08 
TCGA-FG-8186 TCGA-FG-A60K TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A710 TCGA-HT-7468 
       16.01         6.64         4.21         4.08        22.95         6.67 
TCGA-HT-7471 TCGA-HT-7608 TCGA-HT-7616 TCGA-HT-7677 TCGA-HT-7684 TCGA-HT-7687 
        0.13        22.06         0.23        16.24         6.05         0.10 
TCGA-HT-7692 TCGA-HT-7875 TCGA-HT-8012 TCGA-HT-8105 TCGA-HT-A5R9 TCGA-HT-A615 
        2.96         0.33         9.40         6.25         0.07        13.02 
TCGA-HW-7491 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-QH-A65R TCGA-QH-A65X TCGA-QH-A65Z 
       40.18        17.82        10.55         5.75         7.79         4.11 
TCGA-QH-A6X4 TCGA-QH-A6X8 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
        6.31         4.73        88.83        94.03        32.65        59.38 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6U2 TCGA-S9-A6UB TCGA-S9-A6WE TCGA-S9-A6WH 
       28.27        28.14        15.62       103.76        72.59        22.92 
TCGA-S9-A6WP TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QZ 
        6.15        12.59         8.19         2.04         8.12        13.02 
TCGA-TM-A7C5 
       25.32 

$subtype4
TCGA-CS-5393 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       40.18        21.01         6.38         7.40         6.61       122.73 
TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5281 TCGA-DB-A4XB TCGA-DB-A4XC 
       72.92        50.17        44.52        78.28        12.72        27.62 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A64W TCGA-DH-5143 
       18.84        18.38        72.95        11.01        13.64        14.40 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7008 TCGA-DU-7009 
       14.56        17.46         7.96         7.73       156.23       138.28 
TCGA-DU-7011 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7300 TCGA-DU-7302 
      105.21        26.30         7.96        18.94        62.01        60.30 
TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8164 TCGA-DU-A6S2 TCGA-DU-A6S3 
       23.31         2.76         3.98        21.40         8.65         2.70 
TCGA-DU-A76K TCGA-DU-A76R TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-FG-5962 
       11.41        21.30        79.99        57.93       134.27        47.77 
TCGA-FG-5964 TCGA-FG-6689 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       34.36        14.93        22.55        20.61        20.09        12.95 
TCGA-FG-8189 TCGA-FG-A713 TCGA-HT-7467 TCGA-HT-7470 TCGA-HT-7474 TCGA-HT-7475 
       11.87         5.23         0.10         8.81         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7483 TCGA-HT-7603 TCGA-HT-7605 
        6.54        75.19        59.18       154.19        23.18         4.57 
TCGA-HT-7607 TCGA-HT-7610 TCGA-HT-7681 TCGA-HT-7688 TCGA-HT-7690 TCGA-HT-7694 
        3.16        56.09        44.68        31.69         0.10         6.90 
TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7874 TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 
       14.53        39.09        37.15         0.13         5.33         2.93 
TCGA-HT-8010 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8113 
        1.64        21.50        33.01         0.46         3.95        29.59 
TCGA-HT-8558 TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5RB TCGA-HT-A616 
        1.71        15.72        10.49         0.13         0.10         1.81 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-IK-8125 
       13.45         8.32        35.90         4.31         8.61        42.77 
TCGA-P5-A5F0 TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X9 TCGA-QH-A6XC TCGA-S9-A6TS 
        4.11         2.20         3.16         1.91         5.03        62.17 
TCGA-S9-A6U6 TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A7IQ TCGA-S9-A7IZ TCGA-TM-A7C4 
        9.86        70.65        10.88        14.27         4.21        35.93 
TCGA-TM-A7CA TCGA-TM-A7CF 
       22.59        48.39 

$subtype5
TCGA-DB-5277 TCGA-DU-7010 TCGA-E1-5304 TCGA-HT-7477 TCGA-HT-7606 TCGA-IK-7675 
       46.65        14.99        41.13        24.26        17.29        19.00 
TCGA-S9-A7IS 
        7.92 

$subtype6
TCGA-DB-A64V TCGA-DU-A5TS TCGA-FG-8187 TCGA-HT-7602 TCGA-HT-7620 TCGA-HT-7689 
       14.73        15.12        20.09        29.85        14.27        14.96 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8111 TCGA-HT-A614 TCGA-HW-7486 TCGA-QH-A65S 
       11.28        31.43         0.23         2.70        29.92         2.53 
TCGA-QH-A65V TCGA-QH-A6X5 TCGA-QH-A6XA TCGA-S9-A6U8 TCGA-S9-A6WQ TCGA-S9-A7QY 
        4.83         3.91         0.23        94.62         3.39        18.21 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
    0.03     0.10     0.07     0.10     7.92     0.23 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
  130.78   211.17   182.33   156.23    46.65    94.62 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
  18.050   10.700   14.170   14.745   19.000   14.500 
[1] "0.0 - 130.8 (18.0)" "0.1 - 211.2 (10.7)" "0.1 - 182.3 (14.2)"
[4] "0.1 - 156.2 (14.7)" "7.9 - 46.6 (19.0)"  "0.2 - 94.6 (14.5)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
  [7] "subtype4" "subtype3" "subtype4" "subtype3" "subtype4" "subtype2"
 [13] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [19] "subtype4" "subtype4" "subtype4" "subtype1" "subtype3" "subtype1"
 [25] "subtype4" "subtype5" "subtype4" "subtype4" "subtype1" "subtype4"
 [31] "subtype1" "subtype3" "subtype4" "subtype4" "subtype1" "subtype4"
 [37] "subtype4" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype6" "subtype4"
 [49] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype3"
 [55] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype4"
 [61] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype4"
 [91] "subtype4" "subtype5" "subtype4" "subtype2" "subtype2" "subtype1"
 [97] "subtype1" "subtype3" "subtype4" "subtype2" "subtype4" "subtype3"
[103] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[109] "subtype1" "subtype4" "subtype2" "subtype2" "subtype4" "subtype1"
[115] "subtype4" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[121] "subtype2" "subtype6" "subtype2" "subtype2" "subtype1" "subtype2"
[127] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype1"
[133] "subtype4" "subtype1" "subtype1" "subtype1" "subtype5" "subtype4"
[139] "subtype4" "subtype4" "subtype3" "subtype3" "subtype1" "subtype3"
[145] "subtype4" "subtype2" "subtype4" "subtype1" "subtype2" "subtype4"
[151] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[157] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[163] "subtype3" "subtype6" "subtype1" "subtype4" "subtype1" "subtype1"
[169] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[175] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[181] "subtype4" "subtype1" "subtype4" "subtype3" "subtype2" "subtype4"
[187] "subtype3" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[193] "subtype5" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
[199] "subtype4" "subtype1" "subtype2" "subtype6" "subtype4" "subtype1"
[205] "subtype4" "subtype5" "subtype4" "subtype3" "subtype1" "subtype4"
[211] "subtype1" "subtype3" "subtype6" "subtype1" "subtype3" "subtype2"
[217] "subtype4" "subtype3" "subtype2" "subtype3" "subtype4" "subtype6"
[223] "subtype4" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[229] "subtype2" "subtype1" "subtype4" "subtype2" "subtype1" "subtype2"
[235] "subtype1" "subtype4" "subtype3" "subtype4" "subtype1" "subtype4"
[241] "subtype4" "subtype2" "subtype6" "subtype6" "subtype4" "subtype2"
[247] "subtype3" "subtype1" "subtype4" "subtype4" "subtype2" "subtype3"
[253] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype6"
[259] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
[265] "subtype4" "subtype4" "subtype3" "subtype2" "subtype4" "subtype2"
[271] "subtype6" "subtype3" "subtype4" "subtype2" "subtype2" "subtype6"
[277] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
[283] "subtype4" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[289] "subtype1" "subtype1" "subtype5" "subtype4" "subtype1" "subtype4"
[295] "subtype1" "subtype2" "subtype3" "subtype6" "subtype6" "subtype3"
[301] "subtype3" "subtype2" "subtype4" "subtype4" "subtype1" "subtype3"
[307] "subtype6" "subtype3" "subtype4" "subtype6" "subtype4" "subtype3"
[313] "subtype3" "subtype3" "subtype3" "subtype4" "subtype1" "subtype2"
[319] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype4"
[325] "subtype6" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[331] "subtype3" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
[337] "subtype6" "subtype4" "subtype5" "subtype3" "subtype4" "subtype3"
[343] "subtype3" "subtype3" "subtype1" "subtype1" "subtype6" "subtype3"
[349] "subtype2" "subtype1" "subtype1" "subtype2" "subtype4" "subtype3"
[355] "subtype4" "subtype4"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
  [7] "subtype4" "subtype3" "subtype4" "subtype3" "subtype4" "subtype2"
 [13] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [19] "subtype4" "subtype4" "subtype4" "subtype1" "subtype3" "subtype1"
 [25] "subtype4" "subtype5" "subtype4" "subtype4" "subtype1" "subtype4"
 [31] "subtype1" "subtype3" "subtype4" "subtype4" "subtype1" "subtype4"
 [37] "subtype4" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype6" "subtype4"
 [49] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype3"
 [55] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype4"
 [61] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype4"
 [91] "subtype4" "subtype5" "subtype4" "subtype2" "subtype2" "subtype1"
 [97] "subtype1" "subtype3" "subtype4" "subtype2" "subtype4" "subtype3"
[103] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[109] "subtype1" "subtype4" "subtype2" "subtype2" "subtype4" "subtype1"
[115] "subtype4" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[121] "subtype2" "subtype6" "subtype2" "subtype2" "subtype1" "subtype2"
[127] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype1"
[133] "subtype4" "subtype1" "subtype1" "subtype1" "subtype5" "subtype4"
[139] "subtype4" "subtype4" "subtype3" "subtype3" "subtype1" "subtype3"
[145] "subtype4" "subtype2" "subtype4" "subtype1" "subtype2" "subtype4"
[151] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[157] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[163] "subtype3" "subtype6" "subtype1" "subtype4" "subtype1" "subtype1"
[169] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[175] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[181] "subtype4" "subtype1" "subtype4" "subtype3" "subtype2" "subtype4"
[187] "subtype3" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[193] "subtype5" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
[199] "subtype4" "subtype1" "subtype2" "subtype6" "subtype4" "subtype1"
[205] "subtype4" "subtype5" "subtype4" "subtype3" "subtype1" "subtype4"
[211] "subtype1" "subtype3" "subtype6" "subtype1" "subtype3" "subtype2"
[217] "subtype4" "subtype3" "subtype2" "subtype3" "subtype4" "subtype6"
[223] "subtype4" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[229] "subtype2" "subtype1" "subtype4" "subtype2" "subtype1" "subtype2"
[235] "subtype1" "subtype4" "subtype3" "subtype4" "subtype1" "subtype4"
[241] "subtype4" "subtype2" "subtype6" "subtype6" "subtype4" "subtype2"
[247] "subtype3" "subtype1" "subtype4" "subtype4" "subtype2" "subtype3"
[253] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype6"
[259] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
[265] "subtype4" "subtype4" "subtype3" "subtype2" "subtype4" "subtype2"
[271] "subtype6" "subtype3" "subtype4" "subtype2" "subtype2" "subtype6"
[277] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
[283] "subtype4" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[289] "subtype1" "subtype1" "subtype5" "subtype4" "subtype1" "subtype4"
[295] "subtype1" "subtype2" "subtype3" "subtype6" "subtype6" "subtype3"
[301] "subtype3" "subtype2" "subtype4" "subtype4" "subtype1" "subtype3"
[307] "subtype6" "subtype3" "subtype4" "subtype6" "subtype4" "subtype3"
[313] "subtype3" "subtype3" "subtype3" "subtype4" "subtype1" "subtype2"
[319] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype4"
[325] "subtype6" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[331] "subtype3" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
[337] "subtype6" "subtype4" "subtype5" "subtype3" "subtype4" "subtype3"
[343] "subtype3" "subtype3" "subtype1" "subtype1" "subtype6" "subtype3"
[349] "subtype2" "subtype1" "subtype1" "subtype2" "subtype4" "subtype3"
[355] "subtype4" "subtype4"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
  [7] "subtype4" "subtype3" "subtype4" "subtype3" "subtype4" "subtype2"
 [13] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [19] "subtype4" "subtype4" "subtype4" "subtype1" "subtype3" "subtype1"
 [25] "subtype4" "subtype5" "subtype4" "subtype4" "subtype1" "subtype4"
 [31] "subtype1" "subtype3" "subtype4" "subtype4" "subtype1" "subtype4"
 [37] "subtype4" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype6" "subtype4"
 [49] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype3"
 [55] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype4"
 [61] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype4"
 [91] "subtype4" "subtype5" "subtype4" "subtype2" "subtype2" "subtype1"
 [97] "subtype1" "subtype3" "subtype4" "subtype2" "subtype4" "subtype3"
[103] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[109] "subtype1" "subtype4" "subtype2" "subtype2" "subtype4" "subtype1"
[115] "subtype4" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[121] "subtype2" "subtype6" "subtype2" "subtype2" "subtype1" "subtype2"
[127] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype1"
[133] "subtype4" "subtype1" "subtype1" "subtype1" "subtype5" "subtype4"
[139] "subtype4" "subtype4" "subtype3" "subtype3" "subtype1" "subtype3"
[145] "subtype4" "subtype2" "subtype4" "subtype1" "subtype2" "subtype4"
[151] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[157] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[163] "subtype3" "subtype6" "subtype1" "subtype4" "subtype1" "subtype1"
[169] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[175] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[181] "subtype4" "subtype1" "subtype4" "subtype3" "subtype2" "subtype4"
[187] "subtype3" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[193] "subtype5" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
[199] "subtype4" "subtype1" "subtype2" "subtype6" "subtype4" "subtype1"
[205] "subtype4" "subtype5" "subtype4" "subtype3" "subtype1" "subtype4"
[211] "subtype1" "subtype3" "subtype6" "subtype1" "subtype3" "subtype2"
[217] "subtype4" "subtype3" "subtype2" "subtype3" "subtype4" "subtype6"
[223] "subtype4" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[229] "subtype2" "subtype1" "subtype4" "subtype2" "subtype1" "subtype2"
[235] "subtype1" "subtype4" "subtype3" "subtype4" "subtype1" "subtype4"
[241] "subtype4" "subtype2" "subtype6" "subtype6" "subtype4" "subtype2"
[247] "subtype3" "subtype1" "subtype4" "subtype4" "subtype2" "subtype3"
[253] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype6"
[259] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
[265] "subtype4" "subtype4" "subtype3" "subtype2" "subtype4" "subtype2"
[271] "subtype6" "subtype3" "subtype4" "subtype2" "subtype2" "subtype6"
[277] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
[283] "subtype4" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[289] "subtype1" "subtype1" "subtype5" "subtype4" "subtype1" "subtype4"
[295] "subtype1" "subtype2" "subtype3" "subtype6" "subtype6" "subtype3"
[301] "subtype3" "subtype2" "subtype4" "subtype4" "subtype1" "subtype3"
[307] "subtype6" "subtype3" "subtype4" "subtype6" "subtype4" "subtype3"
[313] "subtype3" "subtype3" "subtype3" "subtype4" "subtype1" "subtype2"
[319] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype4"
[325] "subtype6" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[331] "subtype3" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
[337] "subtype6" "subtype4" "subtype5" "subtype3" "subtype4" "subtype3"
[343] "subtype3" "subtype3" "subtype1" "subtype1" "subtype6" "subtype3"
[349] "subtype2" "subtype1" "subtype1" "subtype2" "subtype4" "subtype3"
[355] "subtype4" "subtype4"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1 36 55
  subtype2 36 29
  subtype3 35 38
  subtype4 45 59
  subtype5  3  4
  subtype6 10  9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   36   55
  subtype2   36   29
  subtype3   35   38
  subtype4   45   59
  subtype5    3    4
  subtype6   10    9
D7V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1          46               30                15
  subtype2          43               14                 8
  subtype3           1               17                55
  subtype4          24               30                50
  subtype5           6                0                 1
  subtype6           2                9                 8
D7V5, multiclass
D7V6, binary
          cls
clus        0  1
  subtype1 28 63
  subtype2 19 46
  subtype3 10 63
  subtype4 26 78
  subtype5  4  3
  subtype6  2 17
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   28   63
  subtype2   19   46
  subtype3   10   63
  subtype4   26   78
  subtype5    4    3
  subtype6    2   17

Clustering(8) Variable = MRNASEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2        0   1
  subtype1 124  46
  subtype2  53   7
  subtype3 111  15
subtype1 subtype2 subtype3 
     170       60      126 
subtype1 subtype2 subtype3 
      46        7       15 
$subtype1
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5395 
        4.70         7.69        43.89        18.15        10.62        21.01 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43         8.48         7.56 
TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5280 TCGA-DB-A4XD TCGA-DB-A64O 
       81.96        47.93        46.65        36.56        27.02        18.84 
TCGA-DB-A64S TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-A66B TCGA-DH-A66D TCGA-DU-5847 
       15.42        19.96        30.31        29.62        15.75        18.02 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5871 TCGA-DU-5872 
        6.74        13.38         8.45         6.81        18.94        17.49 
TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 
      211.17        49.02        75.16        65.75        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7010 TCGA-DU-7012 TCGA-DU-7013 
        7.73        11.47        62.96        14.99         6.54         8.84 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7299 TCGA-DU-7301 
      117.40        90.77        26.30        10.36        44.02        25.91 
TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8167 
       41.98         5.10        23.74        20.68        19.13        15.48 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       14.24        12.59        15.12         4.96         3.65         5.65 
TCGA-DU-A5TY TCGA-DU-A6S7 TCGA-DU-A76O TCGA-DU-A7T8 TCGA-E1-5302 TCGA-E1-5303 
       12.20         7.23         7.13       124.50        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5322 TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6690 
       41.13       130.78        17.98        32.19        18.77        24.99 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8188 TCGA-FG-8191 
       23.97        13.58        13.68        14.24        14.96        15.52 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       24.46         0.59         5.26         3.72         9.67         7.04 
TCGA-FG-A60L TCGA-FG-A6J3 TCGA-FG-A70Z TCGA-FN-7833 TCGA-HT-7469 TCGA-HT-7472 
        7.04        10.59        10.78         0.13         7.82         0.03 
TCGA-HT-7473 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7485 
       16.54        24.26         6.38         7.10        60.03         4.01 
TCGA-HT-7601 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7609 TCGA-HT-7611 TCGA-HT-7616 
        5.03       107.93        17.29        45.99        57.60         0.23 
TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7689 TCGA-HT-7690 
        0.16         0.76         6.05        42.74        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7857 TCGA-HT-7858 
        0.10        17.52        39.48        19.23         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7882 TCGA-HT-7902 TCGA-HT-8011 
        0.49        23.61         3.68         1.71        31.43        16.24 
TCGA-HT-8013 TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8111 
       63.55        12.23         0.10         2.50         4.70         0.23 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A5R5 TCGA-HT-A5RA TCGA-HT-A5RC 
        3.88        16.04         0.23         0.13        14.70         5.33 
TCGA-HT-A614 TCGA-HT-A617 TCGA-HT-A618 TCGA-HW-7490 TCGA-HW-8320 TCGA-HW-8321 
        2.70        16.14         5.33        19.23         8.94        21.24 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-P5-A5EW TCGA-P5-A5F1 
        7.89         9.67         6.61        19.00         6.71         5.88 
TCGA-P5-A5F6 TCGA-QH-A65S TCGA-QH-A6CV TCGA-QH-A6X3 TCGA-S9-A6TU TCGA-S9-A6TV 
        1.28         2.53         2.96         0.59        69.07        18.77 
TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6WG TCGA-S9-A6WM 
       21.63        11.31        83.70         5.85        70.55         9.30 
TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IS TCGA-S9-A7QX TCGA-S9-A7R2 TCGA-S9-A7R3 
        7.59         3.39         7.92         4.04        10.39        87.09 
TCGA-S9-A7R8 TCGA-TM-A7C3 
       31.59        49.45 

$subtype2
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-DB-5274 TCGA-DB-A4XA 
       64.64         0.10         9.96         8.02        75.25        10.29 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64U TCGA-DB-A64V TCGA-DH-5141 TCGA-DH-5144 
       16.80         5.98        27.81        14.73        31.82         8.02 
TCGA-DH-A669 TCGA-DH-A66F TCGA-DU-5870 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
       30.21         7.79       182.33        15.16        52.11        22.42 
TCGA-DU-6397 TCGA-DU-7018 TCGA-DU-7294 TCGA-DU-A6S8 TCGA-E1-5318 TCGA-E1-5319 
       46.06        30.67        94.32         5.98        78.21        95.57 
TCGA-EZ-7264 TCGA-FG-5964 TCGA-FG-7634 TCGA-FG-7637 TCGA-FG-8186 TCGA-FG-A60K 
       14.33        34.36        15.35        40.08        16.01         6.64 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A710 TCGA-HT-7468 TCGA-HT-7471 TCGA-HT-7677 
        4.21         4.08        22.95         6.67         0.13        16.24 
TCGA-HT-7687 TCGA-HT-7692 TCGA-HT-8012 TCGA-HT-A5R9 TCGA-HT-A615 TCGA-HW-7491 
        0.10         2.96         9.40         0.07        13.02        40.18 
TCGA-HW-8322 TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
       17.82         7.79         4.11         6.31         3.91         4.73 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6U2 TCGA-S9-A6UB 
       94.03        32.65        28.27        28.14        15.62       103.76 
TCGA-S9-A6WE TCGA-S9-A6WP TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-TM-A7C5 
       72.59         6.15         8.19         2.04         8.12        25.32 

$subtype3
TCGA-CS-5393 TCGA-CS-5397 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5276 
       40.18         6.38         7.40         6.61       122.73        72.92 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XC 
       50.17        44.52        78.28        30.08        12.72        27.62 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64R 
       18.84        18.38        72.95        12.59        11.01        16.08 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DH-5143 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-6400 
       13.64        10.92        14.40        14.56        17.46         1.22 
TCGA-DU-6410 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7292 TCGA-DU-7298 
        7.96       156.23       138.28       105.21         7.96        18.94 
TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8164 
       62.01        60.30        23.31         2.76         3.98        21.40 
TCGA-DU-8166 TCGA-DU-8168 TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A76K TCGA-DU-A76R 
       16.96        14.17         8.65         2.70        11.41        21.30 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-FG-5962 TCGA-FG-6689 TCGA-FG-7636 
       79.99        57.93       134.27        47.77        14.93        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8187 TCGA-FG-8189 
       22.55        20.61        20.09        12.95        20.09        11.87 
TCGA-FG-A713 TCGA-HT-7467 TCGA-HT-7470 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        5.23         0.10         8.81         3.75        17.42         6.54 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7483 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7605 
       75.19        59.18       154.19        29.85        23.18         4.57 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7610 TCGA-HT-7620 TCGA-HT-7681 TCGA-HT-7688 
        3.16        22.06        56.09        14.27        44.68        31.69 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
        6.90        14.53        39.09        37.15         0.33         0.13 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8018 TCGA-HT-8019 
        5.33         2.93        11.28         1.64        21.50        33.01 
TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8113 TCGA-HT-8558 TCGA-HT-8564 
        6.25         0.46         3.95        29.59         1.71        15.72 
TCGA-HT-A4DV TCGA-HT-A5RB TCGA-HT-A616 TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       10.49         0.10         1.81        29.92        13.45         8.32 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-A5KJ TCGA-IK-8125 TCGA-P5-A5F0 
       35.90         4.31         8.61        10.55        42.77         4.11 
TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X9 TCGA-QH-A6XA 
        5.75         4.83         2.20         3.16         1.91         0.23 
TCGA-QH-A6XC TCGA-R8-A6MK TCGA-R8-A73M TCGA-S9-A6TS TCGA-S9-A6U6 TCGA-S9-A6U8 
        5.03        88.83        59.38        62.17         9.86        94.62 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A7IQ TCGA-S9-A7IY TCGA-S9-A7IZ 
       22.92        70.65        10.88        14.27        12.59         4.21 
TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A7CF 
        3.58        18.21        13.02        35.93        22.59        48.39 

subtype1 subtype2 subtype3 
    0.03     0.07     0.10 
subtype1 subtype2 subtype3 
  211.17   182.33   156.23 
subtype1 subtype2 subtype3 
  14.960   15.255   14.545 
[1] "0.0 - 211.2 (15.0)" "0.1 - 182.3 (15.3)" "0.1 - 156.2 (14.5)"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [49] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [55] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [61] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [91] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[103] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[115] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[133] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[145] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[163] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[175] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[181] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[205] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[211] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[217] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[223] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[229] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[247] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[259] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[265] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[271] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[277] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[283] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[295] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[301] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[307] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[313] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[325] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[331] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[337] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[343] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[349] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[355] "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [49] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [55] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [61] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [91] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[103] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[115] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[133] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[145] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[163] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[175] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[181] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[205] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[211] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[217] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[223] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[229] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[247] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[259] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[265] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[271] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[277] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[283] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[295] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[301] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[307] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[313] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[325] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[331] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[337] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[343] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[349] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[355] "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [49] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [55] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [61] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [91] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[103] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[115] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[133] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[145] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[163] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[175] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[181] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[205] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[211] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[217] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[223] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[229] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[247] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[259] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[265] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[271] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[277] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[283] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[295] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[301] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[307] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[313] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[325] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[331] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[337] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[343] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[349] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[355] "subtype3" "subtype3"
D8V2, continuous
D8V3, binary
          cls
clus        0  1
  subtype1 76 96
  subtype2 29 31
  subtype3 60 67
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   76   96
  subtype2   29   31
  subtype3   60   67
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       76       29       60
  MALE         96       31       67
D8V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1          92               51                29
  subtype2           1               13                46
  subtype3          29               36                62
D8V5, multiclass
D8V6, binary
          cls
clus         0   1
  subtype1  53 119
  subtype2  11  49
  subtype3  25 102
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   53  119
  subtype2   11   49
  subtype3   25  102
     clus
vv    subtype1 subtype2 subtype3
  NO        53       11       25
  YES      119       49      102

Clustering(9) Variable = MIRSEQ_CNMF
D9V1, survival
          sevent
clus2       0  1
  subtype1 41  5
  subtype2 36 20
  subtype3 17  8
  subtype4 25  4
  subtype5 94 13
  subtype6 48 15
  subtype7 19  2
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
      46       56       25       29      107       63       21 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
       5       20        8        4       13       15        2 
$subtype1
TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-6666 TCGA-DB-5273 TCGA-DB-5280 TCGA-DB-A4X9 
        4.70        43.89         8.48        81.96        36.56        30.08 
TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DH-5143 TCGA-DH-A66D TCGA-DU-6542 TCGA-DU-7015 
       12.72        27.02        14.40        15.75         7.73        90.77 
TCGA-DU-A5TW TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5322 TCGA-FG-6690 TCGA-FG-6691 
        5.65        50.14        67.46       130.78        24.99        23.97 
TCGA-FG-7636 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8188 TCGA-FG-A60J TCGA-FN-7833 
       17.88        13.68        14.24        14.96         7.04         0.13 
TCGA-HT-7472 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7485 TCGA-HT-7604 TCGA-HT-7606 
        0.03         7.10        60.03         4.01       107.93        17.29 
TCGA-HT-7609 TCGA-HT-7611 TCGA-HT-7676 TCGA-HT-7684 TCGA-HT-7692 TCGA-HT-7855 
       45.99        57.60         0.16         6.05         2.96        19.23 
TCGA-HT-8013 TCGA-HW-A5KL TCGA-HW-A5KM TCGA-P5-A5EW TCGA-QH-A6X3 TCGA-QH-A6XA 
       63.55         9.67         6.61         6.71         0.59         0.23 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6WO TCGA-S9-A7QX 
       94.62        83.70         7.59         4.04 

$subtype2
TCGA-CS-4941 TCGA-CS-4944 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-6186 TCGA-DH-5140 
        7.69        10.62        21.01         9.96        17.69        19.96 
TCGA-DH-5142 TCGA-DU-5855 TCGA-DU-6396 TCGA-DU-6402 TCGA-DU-6405 TCGA-DU-6406 
       30.31         6.81        75.16         7.04        19.89        16.83 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7290 
       11.47        62.96         6.54         8.84       117.40        10.36 
TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8165 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TT 
       41.98         5.10        19.13        14.24        12.59         4.96 
TCGA-DU-A5TY TCGA-E1-5318 TCGA-FG-6692 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MX 
       12.20        78.21        13.58        24.46         0.59         3.72 
TCGA-FG-A4MY TCGA-HT-7473 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7616 TCGA-HT-7680 
        9.67        16.54        24.26         6.38         0.23         0.76 
TCGA-HT-7691 TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8110 TCGA-HT-8563 
        0.10         0.49         1.71        16.24         4.70        16.04 
TCGA-HT-A4DS TCGA-HT-A5RA TCGA-HT-A617 TCGA-HW-7490 TCGA-HW-A5KK TCGA-P5-A5F1 
        0.23        14.70        16.14        19.23         7.89         5.88 
TCGA-P5-A5F6 TCGA-QH-A6CV TCGA-S9-A6TW TCGA-S9-A6WG TCGA-S9-A6WM TCGA-S9-A7R2 
        1.28         2.96        28.27        70.55         9.30        10.39 
TCGA-S9-A7R3 TCGA-TM-A7C3 
       87.09        49.45 

$subtype3
TCGA-CS-4943 TCGA-CS-6665 TCGA-DB-A4XE TCGA-DB-A64S TCGA-DH-A66B TCGA-DU-6392 
       18.15        12.43        18.84        15.42        29.62       211.17 
TCGA-DU-6404 TCGA-DU-A5TU TCGA-DU-A7T8 TCGA-E1-5304 TCGA-FG-5963 TCGA-FG-A6J3 
      133.74         3.65       124.50        41.13        17.98        10.59 
TCGA-FG-A70Z TCGA-HT-7469 TCGA-HT-7686 TCGA-HT-7857 TCGA-HT-7884 TCGA-HT-8106 
       10.78         7.82        42.74         0.23        11.28         0.10 
TCGA-HT-A5RC TCGA-IK-7675 TCGA-S9-A6TV TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6UA 
        5.33        19.00        18.77        21.63        11.31         5.85 
TCGA-S9-A7IS 
        7.92 

$subtype4
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-6668 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5277 
       64.64         0.10         8.02        75.25        47.93        46.65 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DH-5141 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66F 
       16.80         5.98        31.82         8.02        30.21         7.79 
TCGA-DU-6394 TCGA-DU-7018 TCGA-EZ-7264 TCGA-FG-7637 TCGA-FG-A60K TCGA-FG-A6IZ 
       22.42        30.67        14.33        40.08         6.64         4.21 
TCGA-HT-7468 TCGA-HT-A5R9 TCGA-HW-7491 TCGA-QH-A65Z TCGA-R8-A6ML TCGA-S9-A6U2 
        6.67         0.07        40.18         4.11        94.03        15.62 
TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-TM-A7C5 
       72.59        22.92         8.19         2.04        25.32 

$subtype5
TCGA-CS-5393 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5278 TCGA-DB-5281 
       40.18         7.40         6.61       122.73        50.17        78.28 
TCGA-DB-A4XC TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       27.62        18.38        72.95        12.59        11.01        18.84 
TCGA-DB-A64R TCGA-DB-A64W TCGA-DB-A64X TCGA-DH-A66G TCGA-DU-7008 TCGA-DU-7009 
       16.08        13.64        10.92         3.85       156.23       138.28 
TCGA-DU-7010 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7300 TCGA-DU-7302 
       14.99        26.30         7.96        18.94        62.01        60.30 
TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8164 TCGA-DU-A5TS TCGA-DU-A6S3 
       23.31         2.76         3.98        21.40        15.12         2.70 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76O TCGA-DU-A76R TCGA-E1-5305 TCGA-E1-5307 
        5.98        11.41         7.13        21.30        79.99        57.93 
TCGA-E1-5311 TCGA-FG-6689 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
      134.27        14.93        22.55        20.61        20.09        12.95 
TCGA-FG-8189 TCGA-FG-A4MW TCGA-FG-A6J1 TCGA-FG-A710 TCGA-HT-7467 TCGA-HT-7470 
       11.87         5.26         4.08        22.95         0.10         8.81 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7603 
        3.75        17.42         6.54        75.19        59.18        23.18 
TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7610 TCGA-HT-7681 TCGA-HT-7688 TCGA-HT-7694 
        4.57         3.16        56.09        44.68        31.69         6.90 
TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7880 
       14.53        39.09        37.15         0.33         0.13         5.33 
TCGA-HT-7881 TCGA-HT-8010 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8107 
        2.93         1.64        21.50        33.01         6.25         0.46 
TCGA-HT-8109 TCGA-HT-8113 TCGA-HT-8558 TCGA-HT-8564 TCGA-HT-A5R5 TCGA-HT-A5RB 
        3.95        29.59         1.71        15.72         0.13         0.10 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61A TCGA-HW-7487 TCGA-HW-7489 
       13.02         1.81         5.33         6.38        13.45         8.32 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-A5KJ TCGA-IK-8125 TCGA-P5-A5F0 
       35.90         4.31         8.61        10.55        42.77         4.11 
TCGA-QH-A65R TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X9 TCGA-S9-A6TS TCGA-S9-A6U6 
        5.75         2.20         3.16         1.91        62.17         9.86 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WP TCGA-S9-A7IQ TCGA-S9-A7IZ TCGA-S9-A7J3 
       70.65        10.88         6.15        14.27         4.21         8.12 
TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-TM-A7C4 TCGA-TM-A7CA 
        3.58        18.21        13.02        35.93        22.59 

$subtype6
TCGA-CS-5397 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6667 TCGA-DB-5279 TCGA-DU-5847 
        6.38        23.84        17.95         7.56        44.52        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5870 
       14.56        17.46         6.74        13.38         8.45       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6395 TCGA-DU-6397 
       18.94        17.49        15.16        52.11        49.02        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6403 TCGA-DU-6407 TCGA-DU-6408 
       65.75         1.22        87.45        11.64        94.52       114.08 
TCGA-DU-6410 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-8161 TCGA-DU-8163 
        7.96        94.32        44.02        25.91        23.74        20.68 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 
       16.96        15.48        14.17        47.77        34.36        32.19 
TCGA-FG-6688 TCGA-FG-7634 TCGA-FG-8186 TCGA-FG-8191 TCGA-HT-7471 TCGA-HT-7483 
       18.77        15.35        16.01        15.52         0.13       154.19 
TCGA-HT-7601 TCGA-HT-7608 TCGA-HT-7677 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 
        5.03        22.06        16.24         0.10        14.96         0.10 
TCGA-HT-7693 TCGA-HT-7854 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7902 
       17.52        39.48        50.63        23.61         3.68        31.43 
TCGA-HT-8012 TCGA-HT-8104 TCGA-HT-8108 TCGA-HT-8111 TCGA-HT-8114 TCGA-HW-7486 
        9.40        12.23         2.50         0.23         3.88        29.92 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
        8.94        21.24        17.82 

$subtype7
TCGA-DB-5276 TCGA-DB-A4XA TCGA-DB-A64U TCGA-DB-A64V TCGA-E1-5319 TCGA-FG-8187 
       72.92        10.29        27.81        14.73        95.57        20.09 
TCGA-FG-A60L TCGA-HT-7602 TCGA-HT-7620 TCGA-HT-A4DV TCGA-HT-A614 TCGA-QH-A65S 
        7.04        29.85        14.27        10.49         2.70         2.53 
TCGA-QH-A65V TCGA-QH-A6CS TCGA-QH-A6X5 TCGA-R8-A6MK TCGA-R8-A6MO TCGA-S9-A6UB 
        4.83         4.18         3.91        88.83        32.65       103.76 
TCGA-S9-A6WQ TCGA-S9-A7IY TCGA-S9-A7R8 
        3.39        12.59        31.59 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
    0.03     0.10     0.10     0.07     0.10     0.10     2.53 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
  130.78   117.40   211.17    94.03   156.23   182.33   103.76 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
  14.680   11.835   15.420   16.800   13.020   17.520   14.270 
[1] "0.0 - 130.8 (14.7)" "0.1 - 117.4 (11.8)" "0.1 - 211.2 (15.4)"
[4] "0.1 - 94.0 (16.8)"  "0.1 - 156.2 (13.0)" "0.1 - 182.3 (17.5)"
[7] "2.5 - 103.8 (14.3)"
  [1] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype4"
  [7] "subtype5" "subtype4" "subtype2" "subtype2" "subtype6" "subtype2"
 [13] "subtype6" "subtype6" "subtype3" "subtype1" "subtype6" "subtype4"
 [19] "subtype5" "subtype5" "subtype5" "subtype1" "subtype4" "subtype4"
 [25] "subtype7" "subtype4" "subtype5" "subtype6" "subtype1" "subtype5"
 [31] "subtype1" "subtype7" "subtype1" "subtype5" "subtype1" "subtype3"
 [37] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype4"
 [43] "subtype4" "subtype5" "subtype3" "subtype7" "subtype7" "subtype5"
 [49] "subtype5" "subtype2" "subtype4" "subtype2" "subtype1" "subtype4"
 [55] "subtype4" "subtype3" "subtype1" "subtype4" "subtype5" "subtype6"
 [61] "subtype6" "subtype6" "subtype6" "subtype6" "subtype6" "subtype2"
 [67] "subtype6" "subtype6" "subtype6" "subtype6" "subtype3" "subtype6"
 [73] "subtype4" "subtype6" "subtype2" "subtype6" "subtype6" "subtype6"
 [79] "subtype6" "subtype2" "subtype6" "subtype3" "subtype2" "subtype2"
 [85] "subtype6" "subtype6" "subtype6" "subtype1" "subtype2" "subtype2"
 [91] "subtype5" "subtype5" "subtype5" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype4" "subtype5" "subtype2" "subtype5" "subtype6"
[103] "subtype5" "subtype6" "subtype5" "subtype6" "subtype5" "subtype5"
[109] "subtype2" "subtype5" "subtype2" "subtype6" "subtype5" "subtype6"
[115] "subtype5" "subtype2" "subtype6" "subtype6" "subtype6" "subtype2"
[121] "subtype2" "subtype5" "subtype2" "subtype3" "subtype1" "subtype2"
[127] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype3"
[133] "subtype1" "subtype1" "subtype3" "subtype5" "subtype5" "subtype5"
[139] "subtype2" "subtype7" "subtype1" "subtype4" "subtype6" "subtype3"
[145] "subtype6" "subtype6" "subtype6" "subtype5" "subtype1" "subtype1"
[151] "subtype2" "subtype6" "subtype1" "subtype4" "subtype5" "subtype5"
[157] "subtype5" "subtype5" "subtype1" "subtype1" "subtype6" "subtype7"
[163] "subtype1" "subtype5" "subtype6" "subtype2" "subtype2" "subtype5"
[169] "subtype2" "subtype2" "subtype1" "subtype4" "subtype7" "subtype4"
[175] "subtype5" "subtype3" "subtype3" "subtype5" "subtype1" "subtype5"
[181] "subtype4" "subtype3" "subtype5" "subtype6" "subtype1" "subtype2"
[187] "subtype5" "subtype5" "subtype5" "subtype2" "subtype2" "subtype1"
[193] "subtype5" "subtype5" "subtype1" "subtype6" "subtype1" "subtype6"
[199] "subtype7" "subtype5" "subtype1" "subtype5" "subtype1" "subtype5"
[205] "subtype6" "subtype1" "subtype5" "subtype1" "subtype2" "subtype7"
[211] "subtype1" "subtype6" "subtype2" "subtype5" "subtype1" "subtype3"
[217] "subtype6" "subtype5" "subtype6" "subtype6" "subtype2" "subtype1"
[223] "subtype6" "subtype5" "subtype5" "subtype6" "subtype1" "subtype5"
[229] "subtype3" "subtype6" "subtype2" "subtype6" "subtype5" "subtype5"
[235] "subtype5" "subtype6" "subtype5" "subtype5" "subtype2" "subtype3"
[241] "subtype6" "subtype5" "subtype2" "subtype6" "subtype1" "subtype5"
[247] "subtype5" "subtype6" "subtype5" "subtype3" "subtype5" "subtype6"
[253] "subtype5" "subtype2" "subtype6" "subtype5" "subtype6" "subtype5"
[259] "subtype2" "subtype5" "subtype2" "subtype7" "subtype5" "subtype4"
[265] "subtype2" "subtype5" "subtype3" "subtype7" "subtype5" "subtype5"
[271] "subtype2" "subtype5" "subtype5" "subtype6" "subtype5" "subtype5"
[277] "subtype2" "subtype4" "subtype5" "subtype5" "subtype5" "subtype6"
[283] "subtype6" "subtype6" "subtype5" "subtype2" "subtype1" "subtype1"
[289] "subtype3" "subtype5" "subtype1" "subtype5" "subtype2" "subtype2"
[295] "subtype5" "subtype7" "subtype7" "subtype4" "subtype7" "subtype2"
[301] "subtype5" "subtype5" "subtype1" "subtype7" "subtype5" "subtype1"
[307] "subtype7" "subtype4" "subtype7" "subtype5" "subtype3" "subtype2"
[313] "subtype3" "subtype3" "subtype4" "subtype5" "subtype1" "subtype1"
[319] "subtype3" "subtype7" "subtype4" "subtype2" "subtype4" "subtype5"
[325] "subtype5" "subtype2" "subtype1" "subtype5" "subtype7" "subtype5"
[331] "subtype3" "subtype7" "subtype5" "subtype4" "subtype4" "subtype5"
[337] "subtype5" "subtype1" "subtype5" "subtype5" "subtype2" "subtype2"
[343] "subtype7" "subtype2" "subtype5" "subtype4" "subtype5"
  [1] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype4"
  [7] "subtype5" "subtype4" "subtype2" "subtype2" "subtype6" "subtype2"
 [13] "subtype6" "subtype6" "subtype3" "subtype1" "subtype6" "subtype4"
 [19] "subtype5" "subtype5" "subtype5" "subtype1" "subtype4" "subtype4"
 [25] "subtype7" "subtype4" "subtype5" "subtype6" "subtype1" "subtype5"
 [31] "subtype1" "subtype7" "subtype1" "subtype5" "subtype1" "subtype3"
 [37] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype4"
 [43] "subtype4" "subtype5" "subtype3" "subtype7" "subtype7" "subtype5"
 [49] "subtype5" "subtype2" "subtype4" "subtype2" "subtype1" "subtype4"
 [55] "subtype4" "subtype3" "subtype1" "subtype4" "subtype5" "subtype6"
 [61] "subtype6" "subtype6" "subtype6" "subtype6" "subtype6" "subtype2"
 [67] "subtype6" "subtype6" "subtype6" "subtype6" "subtype3" "subtype6"
 [73] "subtype4" "subtype6" "subtype2" "subtype6" "subtype6" "subtype6"
 [79] "subtype6" "subtype2" "subtype6" "subtype3" "subtype2" "subtype2"
 [85] "subtype6" "subtype6" "subtype6" "subtype1" "subtype2" "subtype2"
 [91] "subtype5" "subtype5" "subtype5" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype4" "subtype5" "subtype2" "subtype5" "subtype6"
[103] "subtype5" "subtype6" "subtype5" "subtype6" "subtype5" "subtype5"
[109] "subtype2" "subtype5" "subtype2" "subtype6" "subtype5" "subtype6"
[115] "subtype5" "subtype2" "subtype6" "subtype6" "subtype6" "subtype2"
[121] "subtype2" "subtype5" "subtype2" "subtype3" "subtype1" "subtype2"
[127] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype3"
[133] "subtype1" "subtype1" "subtype3" "subtype5" "subtype5" "subtype5"
[139] "subtype2" "subtype7" "subtype1" "subtype4" "subtype6" "subtype3"
[145] "subtype6" "subtype6" "subtype6" "subtype5" "subtype1" "subtype1"
[151] "subtype2" "subtype6" "subtype1" "subtype4" "subtype5" "subtype5"
[157] "subtype5" "subtype5" "subtype1" "subtype1" "subtype6" "subtype7"
[163] "subtype1" "subtype5" "subtype6" "subtype2" "subtype2" "subtype5"
[169] "subtype2" "subtype2" "subtype1" "subtype4" "subtype7" "subtype4"
[175] "subtype5" "subtype3" "subtype3" "subtype5" "subtype1" "subtype5"
[181] "subtype4" "subtype3" "subtype5" "subtype6" "subtype1" "subtype2"
[187] "subtype5" "subtype5" "subtype5" "subtype2" "subtype2" "subtype1"
[193] "subtype5" "subtype5" "subtype1" "subtype6" "subtype1" "subtype6"
[199] "subtype7" "subtype5" "subtype1" "subtype5" "subtype1" "subtype5"
[205] "subtype6" "subtype1" "subtype5" "subtype1" "subtype2" "subtype7"
[211] "subtype1" "subtype6" "subtype2" "subtype5" "subtype1" "subtype3"
[217] "subtype6" "subtype5" "subtype6" "subtype6" "subtype2" "subtype1"
[223] "subtype6" "subtype5" "subtype5" "subtype6" "subtype1" "subtype5"
[229] "subtype3" "subtype6" "subtype2" "subtype6" "subtype5" "subtype5"
[235] "subtype5" "subtype6" "subtype5" "subtype5" "subtype2" "subtype3"
[241] "subtype6" "subtype5" "subtype2" "subtype6" "subtype1" "subtype5"
[247] "subtype5" "subtype6" "subtype5" "subtype3" "subtype5" "subtype6"
[253] "subtype5" "subtype2" "subtype6" "subtype5" "subtype6" "subtype5"
[259] "subtype2" "subtype5" "subtype2" "subtype7" "subtype5" "subtype4"
[265] "subtype2" "subtype5" "subtype3" "subtype7" "subtype5" "subtype5"
[271] "subtype2" "subtype5" "subtype5" "subtype6" "subtype5" "subtype5"
[277] "subtype2" "subtype4" "subtype5" "subtype5" "subtype5" "subtype6"
[283] "subtype6" "subtype6" "subtype5" "subtype2" "subtype1" "subtype1"
[289] "subtype3" "subtype5" "subtype1" "subtype5" "subtype2" "subtype2"
[295] "subtype5" "subtype7" "subtype7" "subtype4" "subtype7" "subtype2"
[301] "subtype5" "subtype5" "subtype1" "subtype7" "subtype5" "subtype1"
[307] "subtype7" "subtype4" "subtype7" "subtype5" "subtype3" "subtype2"
[313] "subtype3" "subtype3" "subtype4" "subtype5" "subtype1" "subtype1"
[319] "subtype3" "subtype7" "subtype4" "subtype2" "subtype4" "subtype5"
[325] "subtype5" "subtype2" "subtype1" "subtype5" "subtype7" "subtype5"
[331] "subtype3" "subtype7" "subtype5" "subtype4" "subtype4" "subtype5"
[337] "subtype5" "subtype1" "subtype5" "subtype5" "subtype2" "subtype2"
[343] "subtype7" "subtype2" "subtype5" "subtype4" "subtype5"
  [1] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype4"
  [7] "subtype5" "subtype4" "subtype2" "subtype2" "subtype6" "subtype2"
 [13] "subtype6" "subtype6" "subtype3" "subtype1" "subtype6" "subtype4"
 [19] "subtype5" "subtype5" "subtype5" "subtype1" "subtype4" "subtype4"
 [25] "subtype7" "subtype4" "subtype5" "subtype6" "subtype1" "subtype5"
 [31] "subtype1" "subtype7" "subtype1" "subtype5" "subtype1" "subtype3"
 [37] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype4"
 [43] "subtype4" "subtype5" "subtype3" "subtype7" "subtype7" "subtype5"
 [49] "subtype5" "subtype2" "subtype4" "subtype2" "subtype1" "subtype4"
 [55] "subtype4" "subtype3" "subtype1" "subtype4" "subtype5" "subtype6"
 [61] "subtype6" "subtype6" "subtype6" "subtype6" "subtype6" "subtype2"
 [67] "subtype6" "subtype6" "subtype6" "subtype6" "subtype3" "subtype6"
 [73] "subtype4" "subtype6" "subtype2" "subtype6" "subtype6" "subtype6"
 [79] "subtype6" "subtype2" "subtype6" "subtype3" "subtype2" "subtype2"
 [85] "subtype6" "subtype6" "subtype6" "subtype1" "subtype2" "subtype2"
 [91] "subtype5" "subtype5" "subtype5" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype4" "subtype5" "subtype2" "subtype5" "subtype6"
[103] "subtype5" "subtype6" "subtype5" "subtype6" "subtype5" "subtype5"
[109] "subtype2" "subtype5" "subtype2" "subtype6" "subtype5" "subtype6"
[115] "subtype5" "subtype2" "subtype6" "subtype6" "subtype6" "subtype2"
[121] "subtype2" "subtype5" "subtype2" "subtype3" "subtype1" "subtype2"
[127] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype3"
[133] "subtype1" "subtype1" "subtype3" "subtype5" "subtype5" "subtype5"
[139] "subtype2" "subtype7" "subtype1" "subtype4" "subtype6" "subtype3"
[145] "subtype6" "subtype6" "subtype6" "subtype5" "subtype1" "subtype1"
[151] "subtype2" "subtype6" "subtype1" "subtype4" "subtype5" "subtype5"
[157] "subtype5" "subtype5" "subtype1" "subtype1" "subtype6" "subtype7"
[163] "subtype1" "subtype5" "subtype6" "subtype2" "subtype2" "subtype5"
[169] "subtype2" "subtype2" "subtype1" "subtype4" "subtype7" "subtype4"
[175] "subtype5" "subtype3" "subtype3" "subtype5" "subtype1" "subtype5"
[181] "subtype4" "subtype3" "subtype5" "subtype6" "subtype1" "subtype2"
[187] "subtype5" "subtype5" "subtype5" "subtype2" "subtype2" "subtype1"
[193] "subtype5" "subtype5" "subtype1" "subtype6" "subtype1" "subtype6"
[199] "subtype7" "subtype5" "subtype1" "subtype5" "subtype1" "subtype5"
[205] "subtype6" "subtype1" "subtype5" "subtype1" "subtype2" "subtype7"
[211] "subtype1" "subtype6" "subtype2" "subtype5" "subtype1" "subtype3"
[217] "subtype6" "subtype5" "subtype6" "subtype6" "subtype2" "subtype1"
[223] "subtype6" "subtype5" "subtype5" "subtype6" "subtype1" "subtype5"
[229] "subtype3" "subtype6" "subtype2" "subtype6" "subtype5" "subtype5"
[235] "subtype5" "subtype6" "subtype5" "subtype5" "subtype2" "subtype3"
[241] "subtype6" "subtype5" "subtype2" "subtype6" "subtype1" "subtype5"
[247] "subtype5" "subtype6" "subtype5" "subtype3" "subtype5" "subtype6"
[253] "subtype5" "subtype2" "subtype6" "subtype5" "subtype6" "subtype5"
[259] "subtype2" "subtype5" "subtype2" "subtype7" "subtype5" "subtype4"
[265] "subtype2" "subtype5" "subtype3" "subtype7" "subtype5" "subtype5"
[271] "subtype2" "subtype5" "subtype5" "subtype6" "subtype5" "subtype5"
[277] "subtype2" "subtype4" "subtype5" "subtype5" "subtype5" "subtype6"
[283] "subtype6" "subtype6" "subtype5" "subtype2" "subtype1" "subtype1"
[289] "subtype3" "subtype5" "subtype1" "subtype5" "subtype2" "subtype2"
[295] "subtype5" "subtype7" "subtype7" "subtype4" "subtype7" "subtype2"
[301] "subtype5" "subtype5" "subtype1" "subtype7" "subtype5" "subtype1"
[307] "subtype7" "subtype4" "subtype7" "subtype5" "subtype3" "subtype2"
[313] "subtype3" "subtype3" "subtype4" "subtype5" "subtype1" "subtype1"
[319] "subtype3" "subtype7" "subtype4" "subtype2" "subtype4" "subtype5"
[325] "subtype5" "subtype2" "subtype1" "subtype5" "subtype7" "subtype5"
[331] "subtype3" "subtype7" "subtype5" "subtype4" "subtype4" "subtype5"
[337] "subtype5" "subtype1" "subtype5" "subtype5" "subtype2" "subtype2"
[343] "subtype7" "subtype2" "subtype5" "subtype4" "subtype5"
D9V2, continuous
D9V3, binary
          cls
clus        0  1
  subtype1 16 30
  subtype2 24 32
  subtype3 14 11
  subtype4 11 18
  subtype5 53 54
  subtype6 31 32
  subtype7 11 11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   16   30
  subtype2   24   32
  subtype3   14   11
  subtype4   11   18
  subtype5   53   54
  subtype6   31   32
  subtype7   11   11
D9V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1          25               16                 5
  subtype2          32               11                13
  subtype3          17                5                 3
  subtype4           2                7                20
  subtype5          25               26                56
  subtype6          14               21                28
  subtype7           3                9                10
D9V5, multiclass
D9V6, binary
          cls
clus        0  1
  subtype1 13 33
  subtype2 15 41
  subtype3  7 18
  subtype4  7 22
  subtype5 18 89
  subtype6 26 37
  subtype7  2 20
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13   33
  subtype2   15   41
  subtype3    7   18
  subtype4    7   22
  subtype5   18   89
  subtype6   26   37
  subtype7    2   20

Clustering(10) Variable = MIRSEQ_CHIERARCHICAL
D10V1, survival
          sevent
clus2        0   1
  subtype1 138  17
  subtype2  14   1
  subtype3 128  49
subtype1 subtype2 subtype3 
     155       15      177 
subtype1 subtype2 subtype3 
      17        1       49 
$subtype1
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5397 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       64.64        40.18         6.38         8.02         7.40         6.61 
TCGA-DB-5270 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5281 TCGA-DB-A4X9 
      122.73        46.65        50.17        44.52        78.28        30.08 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       12.72        27.62        18.84        18.38        72.95        12.59 
TCGA-DB-A64L TCGA-DB-A64R TCGA-DB-A64U TCGA-DB-A64W TCGA-DH-5143 TCGA-DH-A66G 
       11.01        16.08        27.81        13.64        14.40         3.85 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6400 
       14.56        17.46        13.38        15.16        52.11         1.22 
TCGA-DU-6410 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7294 
        7.96       156.23       138.28        26.30         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8162 
       18.94        62.01        60.30        23.31         2.76         3.98 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8168 TCGA-DU-A5TS TCGA-DU-A6S3 
       20.68        21.40        16.96        14.17        15.12         2.70 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76O TCGA-DU-A76R TCGA-E1-5305 TCGA-E1-5307 
        5.98        11.41         7.13        21.30        79.99        57.93 
TCGA-E1-5311 TCGA-EZ-7264 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 
      134.27        14.33        47.77        34.36        32.19        14.93 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       17.88        22.55        20.61        20.09        12.95        13.68 
TCGA-FG-8186 TCGA-FG-8189 TCGA-FG-A60J TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A710 
       16.01        11.87         7.04         4.21         4.08        22.95 
TCGA-HT-7467 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.10         8.81         0.13         3.75        17.42         6.54 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7483 TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7607 
       75.19        59.18       154.19        23.18         4.57         3.16 
TCGA-HT-7610 TCGA-HT-7676 TCGA-HT-7681 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7690 
       56.09         0.16        44.68         0.10        31.69         0.10 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
        6.90        14.53        39.09        37.15         0.33         0.13 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 
        5.33         2.93        11.28        31.43         1.64         9.40 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       21.50        33.01         6.25         0.46         2.50         3.95 
TCGA-HT-8113 TCGA-HT-8558 TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 
       29.59         1.71        15.72        10.49         0.13         0.07 
TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61A 
        0.10         2.70        13.02         1.81         5.33         6.38 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-A5KJ 
       13.45         8.32        35.90         4.31         8.61        10.55 
TCGA-IK-8125 TCGA-P5-A5F0 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65Z TCGA-QH-A6CY 
       42.77         4.11         5.75         4.83         4.11         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X5 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-S9-A6TS TCGA-S9-A6U6 
        3.16         3.91         1.91         0.23        62.17         9.86 
TCGA-S9-A6U8 TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       94.62        72.59        70.55        22.92        70.65        10.88 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IZ TCGA-S9-A7J3 TCGA-S9-A7QW 
        6.15         3.39        14.27         4.21         8.12         3.58 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.21        13.02        35.93        25.32        22.59 

$subtype2
TCGA-CS-6188 TCGA-DB-5276 TCGA-DU-6542 TCGA-DU-7010 TCGA-DU-8167 TCGA-FG-8187 
       23.84        72.92         7.73        14.99        15.48        20.09 
TCGA-HT-7601 TCGA-HT-7608 TCGA-HT-7620 TCGA-HT-7689 TCGA-HT-7854 TCGA-HT-8111 
        5.03        22.06        14.27        14.96        39.48         0.23 
TCGA-HW-7486 TCGA-HW-8321 TCGA-R8-A6MK 
       29.92        21.24        88.83 

$subtype3
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5394 
        4.70         7.69        43.89        18.15        10.62         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-6186 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
       21.01         9.96        17.69        17.95        12.43         8.48 
TCGA-CS-6667 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5280 TCGA-DB-A4XA 
        7.56        81.96        75.25        47.93        36.56        10.29 
TCGA-DB-A4XD TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64S TCGA-DB-A64V 
       27.02        18.84        16.80         5.98        15.42        14.73 
TCGA-DB-A64X TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5144 TCGA-DH-A669 
       10.92        19.96        31.82        30.31         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 
       29.62        15.75         7.79        18.02         6.74         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6392 TCGA-DU-6394 
        6.81       182.33        18.94        17.49       211.17        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 
       49.02        75.16        46.06        65.75        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 
       11.47        62.96         6.54         8.84       117.40        90.77 
TCGA-DU-7018 TCGA-DU-7290 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7306 TCGA-DU-8158 
       30.67        10.36        44.02        25.91        41.98         5.10 
TCGA-DU-8161 TCGA-DU-8165 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TU 
       23.74        19.13        14.24        12.59         4.96         3.65 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A7T8 TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        5.65        12.20       124.50        50.14        67.46        41.13 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-FG-5963 TCGA-FG-6688 TCGA-FG-6690 
       78.21        95.57       130.78        17.98        18.77        24.99 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7637 TCGA-FG-8185 TCGA-FG-8188 
       23.97        13.58        15.35        40.08        14.24        14.96 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       15.52        24.46         0.59         5.26         3.72         9.67 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6J3 TCGA-FG-A70Z TCGA-FN-7833 TCGA-HT-7468 
        6.64         7.04        10.59        10.78         0.13         6.67 
TCGA-HT-7469 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        7.82         0.03        16.54        24.26         6.38         7.10 
TCGA-HT-7482 TCGA-HT-7485 TCGA-HT-7602 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7609 
       60.03         4.01        29.85       107.93        17.29        45.99 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 
       57.60         0.23        16.24         0.76         6.05        42.74 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7855 TCGA-HT-7857 TCGA-HT-7858 
        0.10         2.96        17.52        19.23         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8013 
        0.49        23.61         3.68         1.71        16.24        63.55 
TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8110 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DS 
       12.23         0.10         4.70         3.88        16.04         0.23 
TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A617 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-8320 
       14.70         5.33        16.14        19.23        40.18         8.94 
TCGA-HW-8322 TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-P5-A5EW 
       17.82         7.89         9.67         6.61        19.00         6.71 
TCGA-P5-A5F1 TCGA-P5-A5F6 TCGA-QH-A65S TCGA-QH-A6CS TCGA-QH-A6CV TCGA-QH-A6X3 
        5.88         1.28         2.53         4.18         2.96         0.59 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TZ TCGA-S9-A6U1 
       94.03        32.65        18.77        28.27        21.63        11.31 
TCGA-S9-A6U2 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WM TCGA-S9-A6WO 
       15.62        83.70         5.85       103.76         9.30         7.59 
TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7QX TCGA-S9-A7R2 
        7.92        12.59         8.19         2.04         4.04        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R8 TCGA-TM-A7C3 
       87.09        31.59        49.45 

subtype1 subtype2 subtype3 
    0.07     0.23     0.03 
subtype1 subtype2 subtype3 
  156.23    88.83   211.17 
subtype1 subtype2 subtype3 
   13.64    20.09    15.62 
[1] "0.1 - 156.2 (13.6)" "0.2 - 88.8 (20.1)"  "0.0 - 211.2 (15.6)"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [61] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [91] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[115] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[145] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[175] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[181] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[187] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[199] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[211] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[223] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[229] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[235] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[241] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[247] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[253] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[259] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[265] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[271] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[277] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[283] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[289] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[295] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[301] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[307] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[313] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[319] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[325] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[331] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[337] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[343] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [61] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [91] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[115] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[145] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[175] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[181] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[187] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[199] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[211] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[223] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[229] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[235] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[241] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[247] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[253] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[259] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[265] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[271] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[277] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[283] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[289] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[295] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[301] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[307] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[313] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[319] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[325] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[331] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[337] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[343] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [61] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [91] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[115] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[145] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[175] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[181] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[187] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[199] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[211] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[223] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[229] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[235] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[241] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[247] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[253] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[259] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[265] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[271] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[277] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[283] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[289] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[295] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[301] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[307] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[313] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[319] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[325] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[331] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[337] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[343] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
D10V2, continuous
D10V3, binary
          cls
clus         0   1
  subtype1  79  76
  subtype2   4  11
  subtype3  77 101
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   79   76
  subtype2    4   11
  subtype3   77  101
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       79        4       77
  MALE         76       11      101
D10V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1          30               44                81
  subtype2           5                6                 4
  subtype3          83               45                50
D10V5, multiclass
D10V6, binary
          cls
clus         0   1
  subtype1  29 126
  subtype2   6   9
  subtype3  53 125
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   29  126
  subtype2    6    9
  subtype3   53  125
     clus
vv    subtype1 subtype2 subtype3
  NO        29        6       53
  YES      126        9      125

Clustering(11) Variable = MIRSEQ_MATURE_CNMF
D11V1, survival
          sevent
clus2       0  1
  subtype1 59 11
  subtype2 36 25
  subtype3 33  6
  subtype4 90 10
  subtype5 29 10
  subtype6 12  4
  subtype7 21  1
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
      70       61       39      100       39       16       22 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
      11       25        6       10       10        4        1 
$subtype1
TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-6290 TCGA-CS-6666 
        4.70        43.89        18.15        10.62        17.95         8.48 
TCGA-CS-6667 TCGA-DB-5273 TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XD 
        7.56        81.96        36.56        30.08        12.72        27.02 
TCGA-DB-A64S TCGA-DH-5142 TCGA-DH-A66D TCGA-DU-5855 TCGA-DU-6407 TCGA-DU-6542 
       15.42        30.31        15.75         6.81        94.52         7.73 
TCGA-DU-7010 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7306 
       14.99       117.40        90.77        44.02        25.91        41.98 
TCGA-DU-A5TW TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5322 TCGA-FG-6690 TCGA-FG-6691 
        5.65        50.14        67.46       130.78        24.99        23.97 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8188 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY 
       13.68        14.24        14.96        24.46         3.72         9.67 
TCGA-FG-A60J TCGA-FG-A60L TCGA-FN-7833 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7479 
        7.04         7.04         0.13         0.03        16.54         7.10 
TCGA-HT-7482 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7608 
       60.03         4.01         5.03       107.93        17.29        22.06 
TCGA-HT-7609 TCGA-HT-7611 TCGA-HT-7676 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7689 
       45.99        57.60         0.16         6.05        42.74        14.96 
TCGA-HT-7855 TCGA-HT-8013 TCGA-HT-8114 TCGA-HW-A5KL TCGA-HW-A5KM TCGA-P5-A5EW 
       19.23        63.55         3.88         9.67         6.61         6.71 
TCGA-P5-A5F1 TCGA-QH-A6X3 TCGA-S9-A6TZ TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6WO 
        5.88         0.59        21.63        94.62        83.70         7.59 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7R3 TCGA-S9-A7R8 
        3.58         4.04        87.09        31.59 

$subtype2
TCGA-CS-4941 TCGA-CS-5395 TCGA-CS-6186 TCGA-CS-6188 TCGA-DB-A64O TCGA-DH-5140 
        7.69        21.01        17.69        23.84        18.84        19.96 
TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5872 TCGA-DU-6396 TCGA-DU-6402 
       18.02         6.74         8.45        17.49        75.16         7.04 
TCGA-DU-6403 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6408 TCGA-DU-7006 TCGA-DU-7007 
       11.64        19.89        16.83       114.08        11.47        62.96 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7290 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 
        6.54         8.84        10.36         5.10        23.74        19.13 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TY TCGA-E1-5318 TCGA-FG-6692 
       14.24        12.59         4.96        12.20        78.21        13.58 
TCGA-FG-A4MU TCGA-FG-A60K TCGA-HT-7469 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7616 
        0.59         6.64         7.82        24.26         6.38         0.23 
TCGA-HT-7680 TCGA-HT-7691 TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8011 
        0.76         0.10         0.23         0.49         1.71        16.24 
TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8110 TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A5R9 
       12.23         0.10         4.70        16.04         0.23         0.07 
TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A617 TCGA-HW-7490 TCGA-HW-A5KK TCGA-P5-A5F6 
       14.70         5.33        16.14        19.23         7.89         1.28 
TCGA-QH-A6CV TCGA-S9-A6TW TCGA-S9-A6UA TCGA-S9-A6WG TCGA-S9-A6WM TCGA-S9-A7IY 
        2.96        28.27         5.85        70.55         9.30        12.59 
TCGA-TM-A7C3 
       49.45 

$subtype3
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-DB-5274 TCGA-DB-5275 
       64.64         0.10         9.96         8.02        75.25        47.93 
TCGA-DB-5277 TCGA-DB-A4XG TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64X TCGA-DH-5141 
       46.65        72.95        16.80         5.98        10.92        31.82 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66F TCGA-DU-5870 TCGA-DU-6394 TCGA-DU-7018 
        8.02        30.21         7.79       182.33        22.42        30.67 
TCGA-DU-8168 TCGA-DU-A76R TCGA-E1-5319 TCGA-EZ-7264 TCGA-FG-7637 TCGA-FG-A6IZ 
       14.17        21.30        95.57        14.33        40.08         4.21 
TCGA-HT-7468 TCGA-HT-7677 TCGA-HT-7692 TCGA-HT-7875 TCGA-HW-7491 TCGA-QH-A65Z 
        6.67        16.24         2.96         0.33        40.18         4.11 
TCGA-R8-A6ML TCGA-S9-A6U2 TCGA-S9-A6UB TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A7J1 
       94.03        15.62       103.76        72.59        22.92         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-TM-A7C5 
        2.04         8.12        25.32 

$subtype4
TCGA-CS-5393 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5278 TCGA-DB-5281 
       40.18         7.40         6.61       122.73        50.17        78.28 
TCGA-DB-A4XC TCGA-DB-A4XF TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64R TCGA-DB-A64W 
       27.62        18.38        12.59        11.01        16.08        13.64 
TCGA-DH-5143 TCGA-DH-A66G TCGA-DU-5849 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7019 
       14.40         3.85        14.56       156.23       138.28        26.30 
TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 
        7.96        18.94        62.01        60.30        23.31         2.76 
TCGA-DU-8162 TCGA-DU-8164 TCGA-DU-A6S3 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76O 
        3.98        21.40         2.70         5.98        11.41         7.13 
TCGA-E1-5307 TCGA-E1-5311 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-6689 TCGA-FG-7638 
       57.93       134.27        47.77        34.36        14.93        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8189 TCGA-FG-A4MW TCGA-FG-A6J1 
       20.61        20.09        12.95        11.87         5.26         4.08 
TCGA-FG-A710 TCGA-HT-7467 TCGA-HT-7470 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
       22.95         0.10         8.81         3.75        17.42         6.54 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7610 
       75.19        59.18        23.18         4.57         3.16        56.09 
TCGA-HT-7681 TCGA-HT-7688 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7874 
       44.68        31.69         6.90        14.53        39.09        37.15 
TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-8010 TCGA-HT-8018 TCGA-HT-8019 
        0.13         5.33         2.93         1.64        21.50        33.01 
TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8113 TCGA-HT-8558 TCGA-HT-8564 
        6.25         0.46         3.95        29.59         1.71        15.72 
TCGA-HT-A5R5 TCGA-HT-A5RB TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A61A TCGA-HW-7487 
        0.13         0.10        13.02         1.81         6.38        13.45 
TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-A5KJ TCGA-IK-8125 
        8.32        35.90         4.31         8.61        10.55        42.77 
TCGA-P5-A5F0 TCGA-QH-A65R TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X9 TCGA-QH-A6XA 
        4.11         5.75         2.20         3.16         1.91         0.23 
TCGA-S9-A6TS TCGA-S9-A6U6 TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A7IQ TCGA-S9-A7IZ 
       62.17         9.86        70.65        10.88        14.27         4.21 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-TM-A7C4 TCGA-TM-A7CA 
       18.21        13.02        35.93        22.59 

$subtype5
TCGA-CS-5397 TCGA-DB-5279 TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5871 TCGA-DU-5874 
        6.38        44.52        17.46        13.38        18.94        15.16 
TCGA-DU-6393 TCGA-DU-6395 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       52.11        49.02        46.06        65.75         1.22        87.45 
TCGA-DU-6410 TCGA-DU-7294 TCGA-DU-8163 TCGA-DU-8166 TCGA-DU-8167 TCGA-E1-5305 
        7.96        94.32        20.68        16.96        15.48        79.99 
TCGA-FG-5965 TCGA-FG-7634 TCGA-FG-8186 TCGA-FG-8191 TCGA-HT-7471 TCGA-HT-7483 
       32.19        15.35        16.01        15.52         0.13       154.19 
TCGA-HT-7687 TCGA-HT-7690 TCGA-HT-7693 TCGA-HT-7854 TCGA-HT-7858 TCGA-HT-7873 
        0.10         0.10        17.52        39.48        50.63        23.61 
TCGA-HT-7879 TCGA-HT-7884 TCGA-HT-8012 TCGA-HT-8108 TCGA-HT-8111 TCGA-HW-8320 
        3.68        11.28         9.40         2.50         0.23         8.94 
TCGA-HW-8321 TCGA-HW-8322 TCGA-IK-7675 
       21.24        17.82        19.00 

$subtype6
TCGA-CS-6665 TCGA-DB-A4XE TCGA-DH-A66B TCGA-DU-6392 TCGA-DU-6404 TCGA-DU-A5TU 
       12.43        18.84        29.62       211.17       133.74         3.65 
TCGA-DU-A7T8 TCGA-E1-5304 TCGA-FG-5963 TCGA-FG-7636 TCGA-FG-A6J3 TCGA-FG-A70Z 
      124.50        41.13        17.98        17.88        10.59        10.78 
TCGA-HT-A618 TCGA-S9-A6TV TCGA-S9-A6U1 TCGA-S9-A7IS 
        5.33        18.77        11.31         7.92 

$subtype7
TCGA-DB-5276 TCGA-DB-A4XA TCGA-DB-A64U TCGA-DB-A64V TCGA-DU-A5TS TCGA-FG-6688 
       72.92        10.29        27.81        14.73        15.12        18.77 
TCGA-FG-8187 TCGA-HT-7602 TCGA-HT-7620 TCGA-HT-7902 TCGA-HT-A4DV TCGA-HT-A614 
       20.09        29.85        14.27        31.43        10.49         2.70 
TCGA-HW-7486 TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A6CS TCGA-QH-A6X5 TCGA-R8-A6MK 
       29.92         2.53         4.83         4.18         3.91        88.83 
TCGA-R8-A6MO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7R2 
       32.65         6.15         3.39        10.39 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
    0.03     0.07     0.10     0.10     0.10     3.65     2.53 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
  130.78   114.08   182.33   156.23   154.19   211.17    88.83 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
  16.145   11.640   16.800   13.235   17.460   17.930   14.500 
[1] "0.0 - 130.8 (16.1)" "0.1 - 114.1 (11.6)" "0.1 - 182.3 (16.8)"
[4] "0.1 - 156.2 (13.2)" "0.1 - 154.2 (17.5)" "3.6 - 211.2 (17.9)"
[7] "2.5 - 88.8 (14.5)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
  [7] "subtype4" "subtype3" "subtype2" "subtype3" "subtype5" "subtype2"
 [13] "subtype2" "subtype1" "subtype6" "subtype1" "subtype1" "subtype3"
 [19] "subtype4" "subtype4" "subtype4" "subtype1" "subtype3" "subtype3"
 [25] "subtype7" "subtype3" "subtype4" "subtype5" "subtype1" "subtype4"
 [31] "subtype1" "subtype7" "subtype1" "subtype4" "subtype1" "subtype6"
 [37] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype3"
 [43] "subtype3" "subtype4" "subtype1" "subtype7" "subtype7" "subtype4"
 [49] "subtype3" "subtype2" "subtype3" "subtype1" "subtype4" "subtype3"
 [55] "subtype3" "subtype6" "subtype1" "subtype3" "subtype4" "subtype2"
 [61] "subtype4" "subtype5" "subtype2" "subtype5" "subtype2" "subtype1"
 [67] "subtype3" "subtype5" "subtype2" "subtype5" "subtype6" "subtype5"
 [73] "subtype3" "subtype5" "subtype2" "subtype5" "subtype5" "subtype5"
 [79] "subtype5" "subtype2" "subtype2" "subtype6" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype5" "subtype1" "subtype2" "subtype2"
 [91] "subtype4" "subtype4" "subtype1" "subtype2" "subtype2" "subtype1"
 [97] "subtype1" "subtype3" "subtype4" "subtype2" "subtype4" "subtype5"
[103] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[109] "subtype1" "subtype4" "subtype2" "subtype2" "subtype4" "subtype5"
[115] "subtype4" "subtype2" "subtype5" "subtype5" "subtype3" "subtype2"
[121] "subtype2" "subtype7" "subtype2" "subtype6" "subtype1" "subtype2"
[127] "subtype4" "subtype4" "subtype4" "subtype4" "subtype3" "subtype6"
[133] "subtype1" "subtype1" "subtype6" "subtype5" "subtype4" "subtype4"
[139] "subtype2" "subtype3" "subtype1" "subtype3" "subtype4" "subtype6"
[145] "subtype4" "subtype5" "subtype7" "subtype4" "subtype1" "subtype1"
[151] "subtype2" "subtype5" "subtype6" "subtype3" "subtype4" "subtype4"
[157] "subtype4" "subtype4" "subtype1" "subtype1" "subtype5" "subtype7"
[163] "subtype1" "subtype4" "subtype5" "subtype1" "subtype2" "subtype4"
[169] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[175] "subtype4" "subtype6" "subtype6" "subtype4" "subtype1" "subtype4"
[181] "subtype3" "subtype2" "subtype4" "subtype5" "subtype1" "subtype1"
[187] "subtype4" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
[193] "subtype4" "subtype4" "subtype1" "subtype5" "subtype1" "subtype1"
[199] "subtype7" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
[205] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype7"
[211] "subtype1" "subtype3" "subtype2" "subtype4" "subtype1" "subtype1"
[217] "subtype5" "subtype4" "subtype1" "subtype5" "subtype2" "subtype3"
[223] "subtype5" "subtype4" "subtype4" "subtype5" "subtype1" "subtype4"
[229] "subtype2" "subtype5" "subtype2" "subtype5" "subtype4" "subtype3"
[235] "subtype4" "subtype5" "subtype4" "subtype4" "subtype2" "subtype5"
[241] "subtype7" "subtype4" "subtype2" "subtype5" "subtype1" "subtype4"
[247] "subtype4" "subtype2" "subtype4" "subtype2" "subtype4" "subtype5"
[253] "subtype4" "subtype2" "subtype5" "subtype4" "subtype1" "subtype4"
[259] "subtype2" "subtype4" "subtype2" "subtype7" "subtype4" "subtype2"
[265] "subtype2" "subtype4" "subtype2" "subtype7" "subtype4" "subtype4"
[271] "subtype2" "subtype6" "subtype4" "subtype7" "subtype4" "subtype4"
[277] "subtype2" "subtype3" "subtype4" "subtype4" "subtype4" "subtype5"
[283] "subtype5" "subtype5" "subtype4" "subtype2" "subtype1" "subtype1"
[289] "subtype5" "subtype4" "subtype1" "subtype4" "subtype1" "subtype2"
[295] "subtype4" "subtype7" "subtype7" "subtype3" "subtype7" "subtype2"
[301] "subtype4" "subtype4" "subtype1" "subtype7" "subtype4" "subtype4"
[307] "subtype7" "subtype3" "subtype7" "subtype4" "subtype6" "subtype2"
[313] "subtype1" "subtype6" "subtype3" "subtype4" "subtype1" "subtype1"
[319] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype4"
[325] "subtype4" "subtype2" "subtype1" "subtype7" "subtype7" "subtype4"
[331] "subtype6" "subtype2" "subtype4" "subtype3" "subtype3" "subtype3"
[337] "subtype1" "subtype1" "subtype4" "subtype4" "subtype7" "subtype1"
[343] "subtype1" "subtype2" "subtype4" "subtype3" "subtype4"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
  [7] "subtype4" "subtype3" "subtype2" "subtype3" "subtype5" "subtype2"
 [13] "subtype2" "subtype1" "subtype6" "subtype1" "subtype1" "subtype3"
 [19] "subtype4" "subtype4" "subtype4" "subtype1" "subtype3" "subtype3"
 [25] "subtype7" "subtype3" "subtype4" "subtype5" "subtype1" "subtype4"
 [31] "subtype1" "subtype7" "subtype1" "subtype4" "subtype1" "subtype6"
 [37] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype3"
 [43] "subtype3" "subtype4" "subtype1" "subtype7" "subtype7" "subtype4"
 [49] "subtype3" "subtype2" "subtype3" "subtype1" "subtype4" "subtype3"
 [55] "subtype3" "subtype6" "subtype1" "subtype3" "subtype4" "subtype2"
 [61] "subtype4" "subtype5" "subtype2" "subtype5" "subtype2" "subtype1"
 [67] "subtype3" "subtype5" "subtype2" "subtype5" "subtype6" "subtype5"
 [73] "subtype3" "subtype5" "subtype2" "subtype5" "subtype5" "subtype5"
 [79] "subtype5" "subtype2" "subtype2" "subtype6" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype5" "subtype1" "subtype2" "subtype2"
 [91] "subtype4" "subtype4" "subtype1" "subtype2" "subtype2" "subtype1"
 [97] "subtype1" "subtype3" "subtype4" "subtype2" "subtype4" "subtype5"
[103] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[109] "subtype1" "subtype4" "subtype2" "subtype2" "subtype4" "subtype5"
[115] "subtype4" "subtype2" "subtype5" "subtype5" "subtype3" "subtype2"
[121] "subtype2" "subtype7" "subtype2" "subtype6" "subtype1" "subtype2"
[127] "subtype4" "subtype4" "subtype4" "subtype4" "subtype3" "subtype6"
[133] "subtype1" "subtype1" "subtype6" "subtype5" "subtype4" "subtype4"
[139] "subtype2" "subtype3" "subtype1" "subtype3" "subtype4" "subtype6"
[145] "subtype4" "subtype5" "subtype7" "subtype4" "subtype1" "subtype1"
[151] "subtype2" "subtype5" "subtype6" "subtype3" "subtype4" "subtype4"
[157] "subtype4" "subtype4" "subtype1" "subtype1" "subtype5" "subtype7"
[163] "subtype1" "subtype4" "subtype5" "subtype1" "subtype2" "subtype4"
[169] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[175] "subtype4" "subtype6" "subtype6" "subtype4" "subtype1" "subtype4"
[181] "subtype3" "subtype2" "subtype4" "subtype5" "subtype1" "subtype1"
[187] "subtype4" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
[193] "subtype4" "subtype4" "subtype1" "subtype5" "subtype1" "subtype1"
[199] "subtype7" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
[205] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype7"
[211] "subtype1" "subtype3" "subtype2" "subtype4" "subtype1" "subtype1"
[217] "subtype5" "subtype4" "subtype1" "subtype5" "subtype2" "subtype3"
[223] "subtype5" "subtype4" "subtype4" "subtype5" "subtype1" "subtype4"
[229] "subtype2" "subtype5" "subtype2" "subtype5" "subtype4" "subtype3"
[235] "subtype4" "subtype5" "subtype4" "subtype4" "subtype2" "subtype5"
[241] "subtype7" "subtype4" "subtype2" "subtype5" "subtype1" "subtype4"
[247] "subtype4" "subtype2" "subtype4" "subtype2" "subtype4" "subtype5"
[253] "subtype4" "subtype2" "subtype5" "subtype4" "subtype1" "subtype4"
[259] "subtype2" "subtype4" "subtype2" "subtype7" "subtype4" "subtype2"
[265] "subtype2" "subtype4" "subtype2" "subtype7" "subtype4" "subtype4"
[271] "subtype2" "subtype6" "subtype4" "subtype7" "subtype4" "subtype4"
[277] "subtype2" "subtype3" "subtype4" "subtype4" "subtype4" "subtype5"
[283] "subtype5" "subtype5" "subtype4" "subtype2" "subtype1" "subtype1"
[289] "subtype5" "subtype4" "subtype1" "subtype4" "subtype1" "subtype2"
[295] "subtype4" "subtype7" "subtype7" "subtype3" "subtype7" "subtype2"
[301] "subtype4" "subtype4" "subtype1" "subtype7" "subtype4" "subtype4"
[307] "subtype7" "subtype3" "subtype7" "subtype4" "subtype6" "subtype2"
[313] "subtype1" "subtype6" "subtype3" "subtype4" "subtype1" "subtype1"
[319] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype4"
[325] "subtype4" "subtype2" "subtype1" "subtype7" "subtype7" "subtype4"
[331] "subtype6" "subtype2" "subtype4" "subtype3" "subtype3" "subtype3"
[337] "subtype1" "subtype1" "subtype4" "subtype4" "subtype7" "subtype1"
[343] "subtype1" "subtype2" "subtype4" "subtype3" "subtype4"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
  [7] "subtype4" "subtype3" "subtype2" "subtype3" "subtype5" "subtype2"
 [13] "subtype2" "subtype1" "subtype6" "subtype1" "subtype1" "subtype3"
 [19] "subtype4" "subtype4" "subtype4" "subtype1" "subtype3" "subtype3"
 [25] "subtype7" "subtype3" "subtype4" "subtype5" "subtype1" "subtype4"
 [31] "subtype1" "subtype7" "subtype1" "subtype4" "subtype1" "subtype6"
 [37] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype3"
 [43] "subtype3" "subtype4" "subtype1" "subtype7" "subtype7" "subtype4"
 [49] "subtype3" "subtype2" "subtype3" "subtype1" "subtype4" "subtype3"
 [55] "subtype3" "subtype6" "subtype1" "subtype3" "subtype4" "subtype2"
 [61] "subtype4" "subtype5" "subtype2" "subtype5" "subtype2" "subtype1"
 [67] "subtype3" "subtype5" "subtype2" "subtype5" "subtype6" "subtype5"
 [73] "subtype3" "subtype5" "subtype2" "subtype5" "subtype5" "subtype5"
 [79] "subtype5" "subtype2" "subtype2" "subtype6" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype5" "subtype1" "subtype2" "subtype2"
 [91] "subtype4" "subtype4" "subtype1" "subtype2" "subtype2" "subtype1"
 [97] "subtype1" "subtype3" "subtype4" "subtype2" "subtype4" "subtype5"
[103] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[109] "subtype1" "subtype4" "subtype2" "subtype2" "subtype4" "subtype5"
[115] "subtype4" "subtype2" "subtype5" "subtype5" "subtype3" "subtype2"
[121] "subtype2" "subtype7" "subtype2" "subtype6" "subtype1" "subtype2"
[127] "subtype4" "subtype4" "subtype4" "subtype4" "subtype3" "subtype6"
[133] "subtype1" "subtype1" "subtype6" "subtype5" "subtype4" "subtype4"
[139] "subtype2" "subtype3" "subtype1" "subtype3" "subtype4" "subtype6"
[145] "subtype4" "subtype5" "subtype7" "subtype4" "subtype1" "subtype1"
[151] "subtype2" "subtype5" "subtype6" "subtype3" "subtype4" "subtype4"
[157] "subtype4" "subtype4" "subtype1" "subtype1" "subtype5" "subtype7"
[163] "subtype1" "subtype4" "subtype5" "subtype1" "subtype2" "subtype4"
[169] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[175] "subtype4" "subtype6" "subtype6" "subtype4" "subtype1" "subtype4"
[181] "subtype3" "subtype2" "subtype4" "subtype5" "subtype1" "subtype1"
[187] "subtype4" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
[193] "subtype4" "subtype4" "subtype1" "subtype5" "subtype1" "subtype1"
[199] "subtype7" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
[205] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype7"
[211] "subtype1" "subtype3" "subtype2" "subtype4" "subtype1" "subtype1"
[217] "subtype5" "subtype4" "subtype1" "subtype5" "subtype2" "subtype3"
[223] "subtype5" "subtype4" "subtype4" "subtype5" "subtype1" "subtype4"
[229] "subtype2" "subtype5" "subtype2" "subtype5" "subtype4" "subtype3"
[235] "subtype4" "subtype5" "subtype4" "subtype4" "subtype2" "subtype5"
[241] "subtype7" "subtype4" "subtype2" "subtype5" "subtype1" "subtype4"
[247] "subtype4" "subtype2" "subtype4" "subtype2" "subtype4" "subtype5"
[253] "subtype4" "subtype2" "subtype5" "subtype4" "subtype1" "subtype4"
[259] "subtype2" "subtype4" "subtype2" "subtype7" "subtype4" "subtype2"
[265] "subtype2" "subtype4" "subtype2" "subtype7" "subtype4" "subtype4"
[271] "subtype2" "subtype6" "subtype4" "subtype7" "subtype4" "subtype4"
[277] "subtype2" "subtype3" "subtype4" "subtype4" "subtype4" "subtype5"
[283] "subtype5" "subtype5" "subtype4" "subtype2" "subtype1" "subtype1"
[289] "subtype5" "subtype4" "subtype1" "subtype4" "subtype1" "subtype2"
[295] "subtype4" "subtype7" "subtype7" "subtype3" "subtype7" "subtype2"
[301] "subtype4" "subtype4" "subtype1" "subtype7" "subtype4" "subtype4"
[307] "subtype7" "subtype3" "subtype7" "subtype4" "subtype6" "subtype2"
[313] "subtype1" "subtype6" "subtype3" "subtype4" "subtype1" "subtype1"
[319] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype4"
[325] "subtype4" "subtype2" "subtype1" "subtype7" "subtype7" "subtype4"
[331] "subtype6" "subtype2" "subtype4" "subtype3" "subtype3" "subtype3"
[337] "subtype1" "subtype1" "subtype4" "subtype4" "subtype7" "subtype1"
[343] "subtype1" "subtype2" "subtype4" "subtype3" "subtype4"
D11V2, continuous
D11V3, binary
          cls
clus        0  1
  subtype1 29 41
  subtype2 31 30
  subtype3 15 24
  subtype4 49 51
  subtype5 16 23
  subtype6 10  6
  subtype7 10 13
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   29   41
  subtype2   31   30
  subtype3   15   24
  subtype4   49   51
  subtype5   16   23
  subtype6   10    6
  subtype7   10   13
D11V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1          40               20                10
  subtype2          34               14                13
  subtype3           3                7                29
  subtype4          20               26                54
  subtype5           7               14                18
  subtype6          11                4                 1
  subtype7           3               10                10
D11V5, multiclass
D11V6, binary
          cls
clus        0  1
  subtype1 22 48
  subtype2 14 47
  subtype3 10 29
  subtype4 21 79
  subtype5 13 26
  subtype6  5 11
  subtype7  3 20
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   22   48
  subtype2   14   47
  subtype3   10   29
  subtype4   21   79
  subtype5   13   26
  subtype6    5   11
  subtype7    3   20

Clustering(12) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D12V1, survival
          sevent
clus2        0   1
  subtype1   4   1
  subtype2 137  21
  subtype3 139  45
subtype1 subtype2 subtype3 
       5      158      184 
subtype1 subtype2 subtype3 
       1       21       45 
$subtype1
TCGA-DB-A4XC TCGA-DU-7010 TCGA-HT-7477 TCGA-HT-A618 TCGA-S9-A6WG 
       27.62        14.99        24.26         5.33        70.55 

$subtype2
TCGA-CS-5393 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6665 TCGA-CS-6669 TCGA-CS-6670 
       40.18        21.01         6.38        12.43         7.40         6.61 
TCGA-DB-5270 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-A4X9 TCGA-DB-A4XE TCGA-DB-A4XF 
      122.73        50.17        44.52        30.08        18.84        18.38 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64R TCGA-DB-A64U TCGA-DB-A64W 
       72.95        12.59        11.01        16.08        27.81        13.64 
TCGA-DH-5143 TCGA-DH-A66G TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       14.40         3.85        14.56        17.46         6.74        13.38 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6400 TCGA-DU-6403 TCGA-DU-6404 
       15.16       211.17        52.11         1.22        11.64       133.74 
TCGA-DU-6410 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7298 
        7.96       156.23       138.28        26.30         7.96        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8162 
       44.02        62.01        60.30        23.31         2.76         3.98 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TS 
       20.68        21.40        16.96        15.48        14.17        15.12 
TCGA-DU-A6S3 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76O TCGA-DU-A76R TCGA-E1-5305 
        2.70         5.98        11.41         7.13        21.30        79.99 
TCGA-E1-5307 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 
       57.93        47.77        17.98        34.36        32.19        14.93 
TCGA-FG-6690 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       24.99        17.88        22.55        20.61        20.09        12.95 
TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8189 TCGA-FG-A4MW TCGA-FG-A6J1 
       13.68        16.01        20.09        11.87         5.26         4.08 
TCGA-FG-A710 TCGA-HT-7467 TCGA-HT-7470 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
       22.95         0.10         8.81         3.75        17.42         6.54 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7483 TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7607 
       75.19        59.18       154.19        23.18         4.57         3.16 
TCGA-HT-7610 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7681 TCGA-HT-7687 TCGA-HT-7688 
       56.09        14.27         0.16        44.68         0.10        31.69 
TCGA-HT-7690 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7874 TCGA-HT-7875 
        0.10         6.90        14.53        39.09        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        0.13         5.33         2.93        11.28        31.43         1.64 
TCGA-HT-8012 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8107 
        9.40        21.50        33.01        12.23         6.25         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8564 
        2.50         3.95        29.59         3.88         1.71        15.72 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A615 
       10.49         0.13         0.07         0.10         2.70        13.02 
TCGA-HT-A616 TCGA-HT-A61A TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7493 
        1.81         6.38        29.92        13.45         8.32        35.90 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-IK-8125 
        4.31         8.61        21.24        17.82        10.55        42.77 
TCGA-P5-A5F0 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65Z TCGA-QH-A6CY TCGA-QH-A6CZ 
        4.11         5.75         4.83         4.11         2.20         3.16 
TCGA-QH-A6X5 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-S9-A6TS TCGA-S9-A6U6 TCGA-S9-A6WE 
        3.91         1.91         0.23        62.17         9.86        72.59 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       22.92        70.65        10.88         6.15         3.39        14.27 
TCGA-S9-A7IZ TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-TM-A7C4 
        4.21         8.12         3.58        18.21        13.02        35.93 
TCGA-TM-A7C5 TCGA-TM-A7CA 
       25.32        22.59 

$subtype3
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 
        0.10         9.96        17.69        23.84        17.95         8.48 
TCGA-CS-6667 TCGA-CS-6668 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        7.56         8.02        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD 
       46.65        36.56        78.28        10.29        12.72        27.02 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64S TCGA-DB-A64V TCGA-DB-A64X 
       18.84        16.80         5.98        15.42        14.73        10.92 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       19.96        31.82        30.31         8.02        30.21        29.62 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DU-5847 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       15.75         7.79        18.02         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       18.94        17.49        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
       65.75        87.45         7.04        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7012 TCGA-DU-7013 
      114.08         7.73        11.47        62.96         6.54         8.84 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7290 TCGA-DU-7294 TCGA-DU-7301 
      117.40        90.77        30.67        10.36        94.32        25.91 
TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 TCGA-DU-A5TP TCGA-DU-A5TR 
       41.98         5.10        23.74        19.13        14.24        12.59 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A7T8 TCGA-E1-5302 
        4.96         3.65         5.65        12.20       124.50        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       67.46        41.13       134.27        78.21        95.57       130.78 
TCGA-EZ-7264 TCGA-FG-6688 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7637 
       14.33        18.77        23.97        13.58        15.35        40.08 
TCGA-FG-8185 TCGA-FG-8188 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MX 
       14.24        14.96        15.52        24.46         0.59         3.72 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J3 
        9.67         7.04         6.64         7.04         4.21        10.59 
TCGA-FG-A70Z TCGA-FN-7833 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7472 
       10.78         0.13         6.67         7.82         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7485 TCGA-HT-7601 
       16.54         6.38         7.10        60.03         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7611 
       29.85       107.93        17.29        22.06        45.99        57.60 
TCGA-HT-7616 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7689 
        0.23        16.24         0.76         6.05        42.74        14.96 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7857 
        0.10         2.96        17.52        39.48        19.23         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7882 TCGA-HT-8011 
       50.63         0.49        23.61         3.68         1.71        16.24 
TCGA-HT-8013 TCGA-HT-8106 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8563 TCGA-HT-A4DS 
       63.55         0.10         4.70         0.23        16.04         0.23 
TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A617 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-8320 
       14.70         5.33        16.14        19.23        40.18         8.94 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-P5-A5EW TCGA-P5-A5F1 
        7.89         9.67         6.61        19.00         6.71         5.88 
TCGA-P5-A5F6 TCGA-QH-A65S TCGA-QH-A6CS TCGA-QH-A6CV TCGA-QH-A6X3 TCGA-R8-A6MK 
        1.28         2.53         4.18         2.96         0.59        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TZ TCGA-S9-A6U1 
       94.03        32.65        18.77        28.27        21.63        11.31 
TCGA-S9-A6U2 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WM 
       15.62        94.62        83.70         5.85       103.76         9.30 
TCGA-S9-A6WO TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7QX 
        7.59         7.92        12.59         8.19         2.04         4.04 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R8 TCGA-TM-A7C3 
       10.39        87.09        31.59        49.45 

subtype1 subtype2 subtype3 
    5.33     0.07     0.03 
subtype1 subtype2 subtype3 
   70.55   211.17   182.33 
subtype1 subtype2 subtype3 
  24.260   13.925   15.570 
[1] "5.3 - 70.5 (24.3)"  "0.1 - 211.2 (13.9)" "0.0 - 182.3 (15.6)"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[181] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[193] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[205] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[217] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[223] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[229] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[235] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[241] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[247] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[253] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[265] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[271] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[289] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[295] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[301] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[307] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[313] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[319] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[325] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[331] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[337] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[343] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[181] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[193] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[205] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[217] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[223] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[229] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[235] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[241] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[247] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[253] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[265] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[271] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[289] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[295] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[301] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[307] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[313] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[319] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[325] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[331] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[337] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[343] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[181] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[193] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[205] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[217] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[223] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[229] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[235] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[241] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[247] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[253] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[265] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[271] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[289] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[295] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[301] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[307] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[313] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[319] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[325] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[331] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[337] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[343] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
D12V2, continuous
D12V3, binary
          cls
clus         0   1
  subtype1   2   3
  subtype2  79  79
  subtype3  79 106
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2    3
  subtype2   79   79
  subtype3   79  106
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        2       79       79
  MALE          3       79      106
D12V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1           4                1                 0
  subtype2          31               47                80
  subtype3          83               47                55
D12V5, multiclass
D12V6, binary
          cls
clus         0   1
  subtype1   0   5
  subtype2  35 123
  subtype3  53 132
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0    5
  subtype2   35  123
  subtype3   53  132
     clus
vv    subtype1 subtype2 subtype3
  NO         0       35       53
  YES        5      123      132
> q(save="no")
