
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LGG-TP/8312468/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LGG-TP/8312260/LGG-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LGG-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=LGG-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LGG-TP/8312260/LGG-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LGG-TP/8312468/transformed.cor.cli.txt"

nPatients in clinical file=516, in cluster file=463, common to both=463
[1]  48 463
[1] "AMP PEAK  1(1Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE 
                           38                           425 
  AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE 
                           38                           425 
[1] "AMP PEAK  2(1Q43) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q43) MUTATED AMP PEAK  2(1Q43) WILD-TYPE 
                         28                         435 
  AMP PEAK  2(1Q43) MUTATED AMP PEAK  2(1Q43) WILD-TYPE 
                         28                         435 
[1] "AMP PEAK  3(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE 
                           20                           443 
  AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE 
                           20                           443 
[1] "AMP PEAK  4(3Q26.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE 
                            18                            445 
  AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE 
                            18                            445 
[1] "AMP PEAK  5(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         26                         437 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         26                         437 
[1] "AMP PEAK  6(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE 
                          121                           342 
  AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE 
                          121                           342 
[1] "AMP PEAK  7(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE 
                          164                           299 
  AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE 
                          164                           299 
[1] "AMP PEAK  8(7Q32.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE 
                          173                           290 
  AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE 
                          173                           290 
[1] "AMP PEAK  9(8Q24.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE 
                            92                            371 
  AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE 
                            92                            371 
[1] "AMP PEAK 10(10P15.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(10P15.3) MUTATED AMP PEAK 10(10P15.3) WILD-TYPE 
                            62                            401 
  AMP PEAK 10(10P15.3) MUTATED AMP PEAK 10(10P15.3) WILD-TYPE 
                            62                            401 
[1] "AMP PEAK 11(11Q23.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(11Q23.3) MUTATED AMP PEAK 11(11Q23.3) WILD-TYPE 
                            76                            387 
  AMP PEAK 11(11Q23.3) MUTATED AMP PEAK 11(11Q23.3) WILD-TYPE 
                            76                            387 
[1] "AMP PEAK 12(12P13.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE 
                             66                             397 
  AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE 
                             66                             397 
[1] "AMP PEAK 13(12Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(12Q14.1) MUTATED AMP PEAK 13(12Q14.1) WILD-TYPE 
                            34                            429 
  AMP PEAK 13(12Q14.1) MUTATED AMP PEAK 13(12Q14.1) WILD-TYPE 
                            34                            429 
[1] "AMP PEAK 14(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(13Q34) MUTATED AMP PEAK 14(13Q34) WILD-TYPE 
                          19                          444 
  AMP PEAK 14(13Q34) MUTATED AMP PEAK 14(13Q34) WILD-TYPE 
                          19                          444 
[1] "AMP PEAK 15(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(15Q26.3) MUTATED AMP PEAK 15(15Q26.3) WILD-TYPE 
                            18                            445 
  AMP PEAK 15(15Q26.3) MUTATED AMP PEAK 15(15Q26.3) WILD-TYPE 
                            18                            445 
[1] "AMP PEAK 16(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(17Q25.1) MUTATED AMP PEAK 16(17Q25.1) WILD-TYPE 
                            35                            428 
  AMP PEAK 16(17Q25.1) MUTATED AMP PEAK 16(17Q25.1) WILD-TYPE 
                            35                            428 
[1] "AMP PEAK 17(19P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(19P13.3) MUTATED AMP PEAK 17(19P13.3) WILD-TYPE 
                           115                            348 
  AMP PEAK 17(19P13.3) MUTATED AMP PEAK 17(19P13.3) WILD-TYPE 
                           115                            348 
[1] "AMP PEAK 18(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE 
                           109                            354 
  AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE 
                           109                            354 
[1] "AMP PEAK 19(XP11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE 
                            47                            416 
  AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE 
                            47                            416 
[1] "DEL PEAK  1(1P36.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                           194                            269 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                           194                            269 
[1] "DEL PEAK  2(1P32.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE 
                          179                           284 
  DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE 
                          179                           284 
[1] "DEL PEAK  3(1Q43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                         29                         434 
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                         29                         434 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           69                           394 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           69                           394 
[1] "DEL PEAK  5(3P21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P21.1) MUTATED DEL PEAK  5(3P21.1) WILD-TYPE 
                           45                           418 
  DEL PEAK  5(3P21.1) MUTATED DEL PEAK  5(3P21.1) WILD-TYPE 
                           45                           418 
[1] "DEL PEAK  6(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE 
                         41                         422 
  DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE 
                         41                         422 
[1] "DEL PEAK  7(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                          127                           336 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                          127                           336 
[1] "DEL PEAK  8(5P15.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE 
                            47                            416 
  DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE 
                            47                            416 
[1] "DEL PEAK  9(5Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE 
                         56                         407 
  DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE 
                         56                         407 
[1] "DEL PEAK 10(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE 
                           48                           415 
  DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE 
                           48                           415 
[1] "DEL PEAK 11(6Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q24.3) MUTATED DEL PEAK 11(6Q24.3) WILD-TYPE 
                           74                           389 
  DEL PEAK 11(6Q24.3) MUTATED DEL PEAK 11(6Q24.3) WILD-TYPE 
                           74                           389 
[1] "DEL PEAK 12(7P22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                           20                           443 
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                           20                           443 
[1] "DEL PEAK 13(8Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(8Q24.3) MUTATED DEL PEAK 13(8Q24.3) WILD-TYPE 
                           26                           437 
  DEL PEAK 13(8Q24.3) MUTATED DEL PEAK 13(8Q24.3) WILD-TYPE 
                           26                           437 
[1] "DEL PEAK 14(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE 
                        134                         329 
  DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE 
                        134                         329 
[1] "DEL PEAK 15(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                          158                           305 
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                          158                           305 
[1] "DEL PEAK 16(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(10Q26.3) MUTATED DEL PEAK 16(10Q26.3) WILD-TYPE 
                           139                            324 
  DEL PEAK 16(10Q26.3) MUTATED DEL PEAK 16(10Q26.3) WILD-TYPE 
                           139                            324 
[1] "DEL PEAK 17(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(11P15.5) MUTATED DEL PEAK 17(11P15.5) WILD-TYPE 
                            95                            368 
  DEL PEAK 17(11P15.5) MUTATED DEL PEAK 17(11P15.5) WILD-TYPE 
                            95                            368 
[1] "DEL PEAK 18(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(12P13.1) MUTATED DEL PEAK 18(12P13.1) WILD-TYPE 
                            37                            426 
  DEL PEAK 18(12P13.1) MUTATED DEL PEAK 18(12P13.1) WILD-TYPE 
                            37                            426 
[1] "DEL PEAK 19(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE 
                          64                          399 
  DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE 
                          64                          399 
[1] "DEL PEAK 20(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE 
                           129                            334 
  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE 
                           129                            334 
[1] "DEL PEAK 21(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE 
                           131                            332 
  DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE 
                           131                            332 
[1] "DEL PEAK 22(13Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE 
                          98                          365 
  DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE 
                          98                          365 
[1] "DEL PEAK 23(14Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(14Q24.3) MUTATED DEL PEAK 23(14Q24.3) WILD-TYPE 
                           107                            356 
  DEL PEAK 23(14Q24.3) MUTATED DEL PEAK 23(14Q24.3) WILD-TYPE 
                           107                            356 
[1] "DEL PEAK 24(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(18Q23) MUTATED DEL PEAK 24(18Q23) WILD-TYPE 
                          71                          392 
  DEL PEAK 24(18Q23) MUTATED DEL PEAK 24(18Q23) WILD-TYPE 
                          71                          392 
[1] "DEL PEAK 25(19Q13.42) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE 
                            250                             213 
  DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE 
                            250                             213 
[1] "DEL PEAK 26(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE 
                             68                             395 
  DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE 
                             68                             395 
[1] "DEL PEAK 27(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE 
                             68                             395 
  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE 
                             68                             395 
[1] "DEL PEAK 28(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(XP21.1) MUTATED DEL PEAK 28(XP21.1) WILD-TYPE 
                           93                           370 
  DEL PEAK 28(XP21.1) MUTATED DEL PEAK 28(XP21.1) WILD-TYPE 
                           93                           370 
[1] "DEL PEAK 29(XQ21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE 
                           67                           396 
  DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE 
                           67                           396 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 463 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 463 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q32.1) MUTATED        0      0      2
  AMP PEAK  1(1Q32.1) WILD-TYPE      9     10      6
D1V1, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  1(1Q32.1) MUTATED"
clus
  AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE 
                            2                            25 
                   TCGA-CS-4942                    TCGA-CS-4943 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5396 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5270                    TCGA-DB-5273 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5274                    TCGA-DB-5275 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5276                    TCGA-DB-5278 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5280                    TCGA-DB-5281 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5140                    TCGA-DH-5141 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5142                    TCGA-DH-5143 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5144                    TCGA-E1-5302 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5303                    TCGA-E1-5304 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5311                    TCGA-E1-5318 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5322 
"AMP PEAK  1(1Q32.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q32.1) MUTATED        0      0      1      1
  AMP PEAK  1(1Q32.1) WILD-TYPE      7      6      9      3
D1V2, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  1(1Q32.1) MUTATED"
clus
  AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE 
                            2                            25 
                   TCGA-CS-4942                    TCGA-CS-4943 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5396 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5270                    TCGA-DB-5273 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5274                    TCGA-DB-5275 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5276                    TCGA-DB-5278 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5280                    TCGA-DB-5281 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5140                    TCGA-DH-5141 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5142                    TCGA-DH-5143 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5144                    TCGA-E1-5302 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5303                    TCGA-E1-5304 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5311                    TCGA-E1-5318 
"AMP PEAK  1(1Q32.1) WILD-TYPE" "AMP PEAK  1(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5322 
"AMP PEAK  1(1Q32.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q32.1) MUTATED        6     27      5
  AMP PEAK  1(1Q32.1) WILD-TYPE    133     83    209
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE
  CLUS_1                           6                           133
  CLUS_2                          27                            83
  CLUS_3                           5                           209
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q32.1) MUTATED        9     21      3      5
  AMP PEAK  1(1Q32.1) WILD-TYPE    190     44     50    136
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE
  CLUS_1                           9                           190
  CLUS_2                          21                            44
  CLUS_3                           3                            50
  CLUS_4                           5                           136
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q32.1) MUTATED        4      8      2      8
  AMP PEAK  1(1Q32.1) WILD-TYPE     48     54     66     66
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE
  CLUS_1                           4                            48
  CLUS_2                           8                            54
  CLUS_3                           2                            66
  CLUS_4                           8                            66
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q32.1) MUTATED        0     12     10
  AMP PEAK  1(1Q32.1) WILD-TYPE      8    117    109
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE
  CLUS_1                           0                             8
  CLUS_2                          12                           117
  CLUS_3                          10                           109
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q32.1) MUTATED        1     21      2     11      2      1
  AMP PEAK  1(1Q32.1) WILD-TYPE    115     68     92    115      9     24
D1V7, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q32.1) MUTATED       25      1     12
  AMP PEAK  1(1Q32.1) WILD-TYPE    199     79    145
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE
  CLUS_1                          25                           199
  CLUS_2                           1                            79
  CLUS_3                          12                           145
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q32.1) MUTATED        1     15      2      2     12      5
  AMP PEAK  1(1Q32.1) WILD-TYPE     61     61     28     39    124     58
                               vv
clus                            CLUS_7
  AMP PEAK  1(1Q32.1) MUTATED        0
  AMP PEAK  1(1Q32.1) WILD-TYPE     27
D1V9, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q32.1) MUTATED       13      1     23
  AMP PEAK  1(1Q32.1) WILD-TYPE    181     15    202
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE
  CLUS_1                          13                           181
  CLUS_2                           1                            15
  CLUS_3                          23                           202
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q32.1) MUTATED        2     16      3     10      1      3
  AMP PEAK  1(1Q32.1) WILD-TYPE     85     61     52    114     38     19
                               vv
clus                            CLUS_7
  AMP PEAK  1(1Q32.1) MUTATED        2
  AMP PEAK  1(1Q32.1) WILD-TYPE     29
D1V11, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q32.1) MUTATED        1     18     18
  AMP PEAK  1(1Q32.1) WILD-TYPE      4    178    216
D1V12, multiclass
        clus
vv       AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                          18                           178
  CLUS_3                          18                           216

Clustering(2) Variable = AMP PEAK  2(1Q43) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q43) MUTATED        0      1      1
  AMP PEAK  2(1Q43) WILD-TYPE      9      9      7
D2V1, multiclass
[1] "Remove cluster labels:"    "AMP PEAK  2(1Q43) MUTATED"
clus
  AMP PEAK  2(1Q43) MUTATED AMP PEAK  2(1Q43) WILD-TYPE 
                          2                          25 
                 TCGA-CS-4942                  TCGA-CS-4943 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-CS-4944                  TCGA-CS-5390 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-CS-5394                  TCGA-CS-5395 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-CS-5396                  TCGA-DB-5270 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DB-5273                  TCGA-DB-5274 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DB-5275                  TCGA-DB-5276 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DB-5278                  TCGA-DB-5280 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DB-5281                  TCGA-DH-5140 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DH-5141                  TCGA-DH-5142 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DH-5143                  TCGA-DH-5144 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-E1-5302                  TCGA-E1-5303 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-E1-5311                  TCGA-E1-5318 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-E1-5322 
"AMP PEAK  2(1Q43) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q43) MUTATED        0      0      0      2
  AMP PEAK  2(1Q43) WILD-TYPE      7      6     10      2
D2V2, multiclass
[1] "Remove cluster labels:"    "AMP PEAK  2(1Q43) MUTATED"
clus
  AMP PEAK  2(1Q43) MUTATED AMP PEAK  2(1Q43) WILD-TYPE 
                          2                          25 
                 TCGA-CS-4942                  TCGA-CS-4943 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-CS-4944                  TCGA-CS-5390 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-CS-5394                  TCGA-CS-5395 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-CS-5396                  TCGA-DB-5270 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DB-5273                  TCGA-DB-5274 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DB-5275                  TCGA-DB-5276 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DB-5278                  TCGA-DB-5280 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DB-5281                  TCGA-DH-5140 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DH-5141                  TCGA-DH-5142 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DH-5143                  TCGA-DH-5144 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-E1-5302                  TCGA-E1-5303 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-E1-5311                  TCGA-E1-5318 
"AMP PEAK  2(1Q43) WILD-TYPE" "AMP PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-E1-5322 
"AMP PEAK  2(1Q43) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q43) MUTATED        8     16      4
  AMP PEAK  2(1Q43) WILD-TYPE    131     94    210
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q43) MUTATED AMP PEAK  2(1Q43) WILD-TYPE
  CLUS_1                         8                         131
  CLUS_2                        16                          94
  CLUS_3                         4                         210
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q43) MUTATED       10     13      1      4
  AMP PEAK  2(1Q43) WILD-TYPE    189     52     52    137
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q43) MUTATED AMP PEAK  2(1Q43) WILD-TYPE
  CLUS_1                        10                         189
  CLUS_2                        13                          52
  CLUS_3                         1                          52
  CLUS_4                         4                         137
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q43) MUTATED        2      8      1      6
  AMP PEAK  2(1Q43) WILD-TYPE     50     54     67     68
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q43) MUTATED AMP PEAK  2(1Q43) WILD-TYPE
  CLUS_1                         2                          50
  CLUS_2                         8                          54
  CLUS_3                         1                          67
  CLUS_4                         6                          68
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q43) MUTATED        0      9      8
  AMP PEAK  2(1Q43) WILD-TYPE      8    120    111
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q43) MUTATED AMP PEAK  2(1Q43) WILD-TYPE
  CLUS_1                         0                           8
  CLUS_2                         9                         120
  CLUS_3                         8                         111
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q43) MUTATED        0     13      2      7      5      1
  AMP PEAK  2(1Q43) WILD-TYPE    116     76     92    119      6     24
D2V7, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q43) MUTATED       18      1      9
  AMP PEAK  2(1Q43) WILD-TYPE    206     79    148
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q43) MUTATED AMP PEAK  2(1Q43) WILD-TYPE
  CLUS_1                        18                         206
  CLUS_2                         1                          79
  CLUS_3                         9                         148
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  2(1Q43) MUTATED        1     12      3      2      8      2      0
  AMP PEAK  2(1Q43) WILD-TYPE     61     64     27     39    128     61     27
D2V9, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q43) MUTATED       10      1     17
  AMP PEAK  2(1Q43) WILD-TYPE    184     15    208
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q43) MUTATED AMP PEAK  2(1Q43) WILD-TYPE
  CLUS_1                        10                         184
  CLUS_2                         1                          15
  CLUS_3                        17                         208
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  2(1Q43) MUTATED        2     12      2      7      1      4      0
  AMP PEAK  2(1Q43) WILD-TYPE     85     65     53    117     38     18     31
D2V11, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q43) MUTATED        2     11     15
  AMP PEAK  2(1Q43) WILD-TYPE      3    185    219
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q43) MUTATED AMP PEAK  2(1Q43) WILD-TYPE
  CLUS_1                         2                           3
  CLUS_2                        11                         185
  CLUS_3                        15                         219

Clustering(3) Variable = AMP PEAK  3(2P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED        0      2      1
  AMP PEAK  3(2P24.3) WILD-TYPE      9      8      7
D3V1, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           0                             9
  CLUS_2                           2                             8
  CLUS_3                           1                             7
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED        1      0      0      2
  AMP PEAK  3(2P24.3) WILD-TYPE      6      6     10      2
D3V2, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           1                             6
  CLUS_2                           0                             6
  CLUS_3                           0                            10
  CLUS_4                           2                             2
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED        8     10      2
  AMP PEAK  3(2P24.3) WILD-TYPE    131    100    212
D3V3, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           8                           131
  CLUS_2                          10                           100
  CLUS_3                           2                           212
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED       10      6      1      3
  AMP PEAK  3(2P24.3) WILD-TYPE    189     59     52    138
D3V4, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          10                           189
  CLUS_2                           6                            59
  CLUS_3                           1                            52
  CLUS_4                           3                           138
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED        2      4      1      2
  AMP PEAK  3(2P24.3) WILD-TYPE     50     58     67     72
D3V5, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           2                            50
  CLUS_2                           4                            58
  CLUS_3                           1                            67
  CLUS_4                           2                            72
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED        1      4      4
  AMP PEAK  3(2P24.3) WILD-TYPE      7    125    115
D3V6, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                           4                           125
  CLUS_3                           4                           115
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(2P24.3) MUTATED        3      6      2      5      4      0
  AMP PEAK  3(2P24.3) WILD-TYPE    113     83     92    121      7     25
D3V7, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED       14      3      3
  AMP PEAK  3(2P24.3) WILD-TYPE    210     77    154
D3V8, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          14                           210
  CLUS_2                           3                            77
  CLUS_3                           3                           154
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(2P24.3) MUTATED        2      6      1      4      5      1
  AMP PEAK  3(2P24.3) WILD-TYPE     60     70     29     37    131     62
                               vv
clus                            CLUS_7
  AMP PEAK  3(2P24.3) MUTATED        0
  AMP PEAK  3(2P24.3) WILD-TYPE     27
D3V9, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED        6      0     13
  AMP PEAK  3(2P24.3) WILD-TYPE    188     16    212
D3V10, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           6                           188
  CLUS_2                           0                            16
  CLUS_3                          13                           212
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(2P24.3) MUTATED        3      5      4      5      0      2
  AMP PEAK  3(2P24.3) WILD-TYPE     84     72     51    119     39     20
                               vv
clus                            CLUS_7
  AMP PEAK  3(2P24.3) MUTATED        0
  AMP PEAK  3(2P24.3) WILD-TYPE     31
D3V11, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED        0      5     14
  AMP PEAK  3(2P24.3) WILD-TYPE      5    191    220
D3V12, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                           5                           191
  CLUS_3                          14                           220

Clustering(4) Variable = AMP PEAK  4(3Q26.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.32) MUTATED        0      1      1
  AMP PEAK  4(3Q26.32) WILD-TYPE      9      9      7
D4V1, multiclass
[1] "Remove cluster labels:"       "AMP PEAK  4(3Q26.32) MUTATED"
clus
  AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE 
                             2                             25 
                    TCGA-CS-4942                     TCGA-CS-4943 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-CS-4944                     TCGA-CS-5390 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-CS-5394                     TCGA-CS-5396 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-DB-5270                     TCGA-DB-5273 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-DB-5274                     TCGA-DB-5275 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-DB-5276                     TCGA-DB-5277 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-DB-5278                     TCGA-DB-5280 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-DB-5281                     TCGA-DH-5140 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-DH-5141                     TCGA-DH-5142 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-DH-5143                     TCGA-DH-5144 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-E1-5302                     TCGA-E1-5303 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5318 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-E1-5322 
"AMP PEAK  4(3Q26.32) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.32) MUTATED        0      0      1      1
  AMP PEAK  4(3Q26.32) WILD-TYPE      7      6      9      3
D4V2, multiclass
[1] "Remove cluster labels:"       "AMP PEAK  4(3Q26.32) MUTATED"
clus
  AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE 
                             2                             25 
                    TCGA-CS-4942                     TCGA-CS-4943 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-CS-4944                     TCGA-CS-5390 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-CS-5394                     TCGA-CS-5396 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-DB-5270                     TCGA-DB-5273 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-DB-5274                     TCGA-DB-5275 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-DB-5276                     TCGA-DB-5277 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-DB-5278                     TCGA-DB-5280 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-DB-5281                     TCGA-DH-5140 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-DH-5141                     TCGA-DH-5142 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-DH-5143                     TCGA-DH-5144 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-E1-5302                     TCGA-E1-5303 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5318 
"AMP PEAK  4(3Q26.32) WILD-TYPE" "AMP PEAK  4(3Q26.32) WILD-TYPE" 
                    TCGA-E1-5322 
"AMP PEAK  4(3Q26.32) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.32) MUTATED        5      9      4
  AMP PEAK  4(3Q26.32) WILD-TYPE    134    101    210
D4V3, multiclass
        clus
vv       AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE
  CLUS_1                            5                            134
  CLUS_2                            9                            101
  CLUS_3                            4                            210
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.32) MUTATED        8      8      0      2
  AMP PEAK  4(3Q26.32) WILD-TYPE    191     57     53    139
D4V4, multiclass
        clus
vv       AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE
  CLUS_1                            8                            191
  CLUS_2                            8                             57
  CLUS_3                            0                             53
  CLUS_4                            2                            139
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.32) MUTATED        0      7      1      3
  AMP PEAK  4(3Q26.32) WILD-TYPE     52     55     67     71
D4V5, multiclass
        clus
vv       AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE
  CLUS_1                            0                             52
  CLUS_2                            7                             55
  CLUS_3                            1                             67
  CLUS_4                            3                             71
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.32) MUTATED        0      7      4
  AMP PEAK  4(3Q26.32) WILD-TYPE      8    122    115
D4V6, multiclass
        clus
vv       AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                            7                            122
  CLUS_3                            4                            115
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.32) MUTATED        2      8      1      4      3      0
  AMP PEAK  4(3Q26.32) WILD-TYPE    114     81     93    122      8     25
D4V7, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.32) MUTATED       14      0      4
  AMP PEAK  4(3Q26.32) WILD-TYPE    210     80    153
D4V8, multiclass
        clus
vv       AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE
  CLUS_1                           14                            210
  CLUS_2                            0                             80
  CLUS_3                            4                            153
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.32) MUTATED        4      9      2      0      1      2
  AMP PEAK  4(3Q26.32) WILD-TYPE     58     67     28     41    135     61
                                vv
clus                             CLUS_7
  AMP PEAK  4(3Q26.32) MUTATED        0
  AMP PEAK  4(3Q26.32) WILD-TYPE     27
D4V9, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.32) MUTATED        4      1     13
  AMP PEAK  4(3Q26.32) WILD-TYPE    190     15    212
D4V10, multiclass
        clus
vv       AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE
  CLUS_1                            4                            190
  CLUS_2                            1                             15
  CLUS_3                           13                            212
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.32) MUTATED        3      9      0      2      1      3
  AMP PEAK  4(3Q26.32) WILD-TYPE     84     68     55    122     38     19
                                vv
clus                             CLUS_7
  AMP PEAK  4(3Q26.32) MUTATED        0
  AMP PEAK  4(3Q26.32) WILD-TYPE     31
D4V11, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.32) MUTATED        1      5     12
  AMP PEAK  4(3Q26.32) WILD-TYPE      4    191    222
D4V12, multiclass
        clus
vv       AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            5                            191
  CLUS_3                           12                            222

Clustering(5) Variable = AMP PEAK  5(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED        1      1      1
  AMP PEAK  5(4Q12) WILD-TYPE      8      9      7
D5V1, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         1                           9
  CLUS_3                         1                           7
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        0      0      1      2
  AMP PEAK  5(4Q12) WILD-TYPE      7      6      9      2
D5V2, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         0                           7
  CLUS_2                         0                           6
  CLUS_3                         1                           9
  CLUS_4                         2                           2
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       17      6      3
  AMP PEAK  5(4Q12) WILD-TYPE    122    104    211
D5V3, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        17                         122
  CLUS_2                         6                         104
  CLUS_3                         3                         211
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       17      7      1      1
  AMP PEAK  5(4Q12) WILD-TYPE    182     58     52    140
D5V4, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        17                         182
  CLUS_2                         7                          58
  CLUS_3                         1                          52
  CLUS_4                         1                         140
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        2      8      0      5
  AMP PEAK  5(4Q12) WILD-TYPE     50     54     68     69
D5V5, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         2                          50
  CLUS_2                         8                          54
  CLUS_3                         0                          68
  CLUS_4                         5                          69
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED        0      6      9
  AMP PEAK  5(4Q12) WILD-TYPE      8    123    110
D5V6, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         0                           8
  CLUS_2                         6                         123
  CLUS_3                         9                         110
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(4Q12) MUTATED        4      8      0      5      7      2
  AMP PEAK  5(4Q12) WILD-TYPE    112     81     94    121      4     23
D5V7, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       21      0      5
  AMP PEAK  5(4Q12) WILD-TYPE    203     80    152
D5V8, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        21                         203
  CLUS_2                         0                          80
  CLUS_3                         5                         152
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  5(4Q12) MUTATED        1      6      7      2      7      0      1
  AMP PEAK  5(4Q12) WILD-TYPE     61     70     23     39    129     63     26
D5V9, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED        8      1     15
  AMP PEAK  5(4Q12) WILD-TYPE    186     15    210
D5V10, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         8                         186
  CLUS_2                         1                          15
  CLUS_3                        15                         210
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  5(4Q12) MUTATED        3      6      3      5      0      5      2
  AMP PEAK  5(4Q12) WILD-TYPE     84     71     52    119     39     17     29
D5V11, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED        2      8     14
  AMP PEAK  5(4Q12) WILD-TYPE      3    188    220
D5V12, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         2                           3
  CLUS_2                         8                         188
  CLUS_3                        14                         220

Clustering(6) Variable = AMP PEAK  6(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED        3      2      3
  AMP PEAK  6(7P11.2) WILD-TYPE      6      8      5
D6V1, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           2                             8
  CLUS_3                           3                             5
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED        1      1      4      2
  AMP PEAK  6(7P11.2) WILD-TYPE      6      5      6      2
D6V2, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                           1                             6
  CLUS_2                           1                             5
  CLUS_3                           4                             6
  CLUS_4                           2                             2
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED       21     92      8
  AMP PEAK  6(7P11.2) WILD-TYPE    118     18    206
D6V3, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          21                           118
  CLUS_2                          92                            18
  CLUS_3                           8                           206
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED       36     56     14     13
  AMP PEAK  6(7P11.2) WILD-TYPE    163      9     39    128
D6V4, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          36                           163
  CLUS_2                          56                             9
  CLUS_3                          14                            39
  CLUS_4                          13                           128
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED       13     31     12     12
  AMP PEAK  6(7P11.2) WILD-TYPE     39     31     56     62
D6V5, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          13                            39
  CLUS_2                          31                            31
  CLUS_3                          12                            56
  CLUS_4                          12                            62
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED        0     45     23
  AMP PEAK  6(7P11.2) WILD-TYPE      8     84     96
D6V6, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                           0                             8
  CLUS_2                          45                            84
  CLUS_3                          23                            96
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7P11.2) MUTATED       19     59      8     25      5      3
  AMP PEAK  6(7P11.2) WILD-TYPE     97     30     86    101      6     22
D6V7, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED       84      7     28
  AMP PEAK  6(7P11.2) WILD-TYPE    140     73    129
D6V8, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          84                           140
  CLUS_2                           7                            73
  CLUS_3                          28                           129
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7P11.2) MUTATED       14     46      8      4     23     16
  AMP PEAK  6(7P11.2) WILD-TYPE     48     30     22     37    113     47
                               vv
clus                            CLUS_7
  AMP PEAK  6(7P11.2) MUTATED        3
  AMP PEAK  6(7P11.2) WILD-TYPE     24
D6V9, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED       35      1     78
  AMP PEAK  6(7P11.2) WILD-TYPE    159     15    147
D6V10, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          35                           159
  CLUS_2                           1                            15
  CLUS_3                          78                           147
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7P11.2) MUTATED       17     49      5     23      7      7
  AMP PEAK  6(7P11.2) WILD-TYPE     70     28     50    101     32     15
                               vv
clus                            CLUS_7
  AMP PEAK  6(7P11.2) MUTATED        6
  AMP PEAK  6(7P11.2) WILD-TYPE     25
D6V11, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED        1     42     71
  AMP PEAK  6(7P11.2) WILD-TYPE      4    154    163
D6V12, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                          42                           154
  CLUS_3                          71                           163

Clustering(7) Variable = AMP PEAK  7(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED        3      3      3
  AMP PEAK  7(7Q31.2) WILD-TYPE      6      7      5
D7V1, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           3                             7
  CLUS_3                           3                             5
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED        2      1      4      2
  AMP PEAK  7(7Q31.2) WILD-TYPE      5      5      6      2
D7V2, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                           2                             5
  CLUS_2                           1                             5
  CLUS_3                           4                             6
  CLUS_4                           2                             2
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED       45     98     21
  AMP PEAK  7(7Q31.2) WILD-TYPE     94     12    193
D7V3, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          45                            94
  CLUS_2                          98                            12
  CLUS_3                          21                           193
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED       70     52     13     27
  AMP PEAK  7(7Q31.2) WILD-TYPE    129     13     40    114
D7V4, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          70                           129
  CLUS_2                          52                            13
  CLUS_3                          13                            40
  CLUS_4                          27                           114
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED       19     33     17     21
  AMP PEAK  7(7Q31.2) WILD-TYPE     33     29     51     53
D7V5, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          19                            33
  CLUS_2                          33                            29
  CLUS_3                          17                            51
  CLUS_4                          21                            53
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED        0     53     37
  AMP PEAK  7(7Q31.2) WILD-TYPE      8     76     82
D7V6, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                           0                             8
  CLUS_2                          53                            76
  CLUS_3                          37                            82
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7Q31.2) MUTATED       43     55     14     38      6      6
  AMP PEAK  7(7Q31.2) WILD-TYPE     73     34     80     88      5     19
D7V7, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED      103     12     47
  AMP PEAK  7(7Q31.2) WILD-TYPE    121     68    110
D7V8, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                         103                           121
  CLUS_2                          12                            68
  CLUS_3                          47                           110
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7Q31.2) MUTATED       23     45     10      7     41     25
  AMP PEAK  7(7Q31.2) WILD-TYPE     39     31     20     34     95     38
                               vv
clus                            CLUS_7
  AMP PEAK  7(7Q31.2) MUTATED        5
  AMP PEAK  7(7Q31.2) WILD-TYPE     22
D7V9, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED       57      2     97
  AMP PEAK  7(7Q31.2) WILD-TYPE    137     14    128
D7V10, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          57                           137
  CLUS_2                           2                            14
  CLUS_3                          97                           128
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7Q31.2) MUTATED       33     46     11     37     14      8
  AMP PEAK  7(7Q31.2) WILD-TYPE     54     31     44     87     25     14
                               vv
clus                            CLUS_7
  AMP PEAK  7(7Q31.2) MUTATED        7
  AMP PEAK  7(7Q31.2) WILD-TYPE     24
D7V11, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED        2     65     89
  AMP PEAK  7(7Q31.2) WILD-TYPE      3    131    145
D7V12, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                          65                           131
  CLUS_3                          89                           145

Clustering(8) Variable = AMP PEAK  8(7Q32.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q32.3) MUTATED        3      3      4
  AMP PEAK  8(7Q32.3) WILD-TYPE      6      7      4
D8V1, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           3                             7
  CLUS_3                           4                             4
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED        2      2      4      2
  AMP PEAK  8(7Q32.3) WILD-TYPE      5      4      6      2
D8V2, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                           2                             5
  CLUS_2                           2                             4
  CLUS_3                           4                             6
  CLUS_4                           2                             2
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q32.3) MUTATED       48    101     24
  AMP PEAK  8(7Q32.3) WILD-TYPE     91      9    190
D8V3, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          48                            91
  CLUS_2                         101                             9
  CLUS_3                          24                           190
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED       76     53     14     28
  AMP PEAK  8(7Q32.3) WILD-TYPE    123     12     39    113
D8V4, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          76                           123
  CLUS_2                          53                            12
  CLUS_3                          14                            39
  CLUS_4                          28                           113
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED       20     34     19     22
  AMP PEAK  8(7Q32.3) WILD-TYPE     32     28     49     52
D8V5, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          20                            32
  CLUS_2                          34                            28
  CLUS_3                          19                            49
  CLUS_4                          22                            52
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q32.3) MUTATED        0     56     39
  AMP PEAK  8(7Q32.3) WILD-TYPE      8     73     80
D8V6, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                           0                             8
  CLUS_2                          56                            73
  CLUS_3                          39                            80
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(7Q32.3) MUTATED       48     55     15     41      6      6
  AMP PEAK  8(7Q32.3) WILD-TYPE     68     34     79     85      5     19
D8V7, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q32.3) MUTATED      107     13     51
  AMP PEAK  8(7Q32.3) WILD-TYPE    117     67    106
D8V8, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                         107                           117
  CLUS_2                          13                            67
  CLUS_3                          51                           106
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(7Q32.3) MUTATED       29     45     10      7     44     25
  AMP PEAK  8(7Q32.3) WILD-TYPE     33     31     20     34     92     38
                               vv
clus                            CLUS_7
  AMP PEAK  8(7Q32.3) MUTATED        5
  AMP PEAK  8(7Q32.3) WILD-TYPE     22
D8V9, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q32.3) MUTATED       61      2    102
  AMP PEAK  8(7Q32.3) WILD-TYPE    133     14    123
D8V10, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          61                           133
  CLUS_2                           2                            14
  CLUS_3                         102                           123
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(7Q32.3) MUTATED       38     46     12     40     14      8
  AMP PEAK  8(7Q32.3) WILD-TYPE     49     31     43     84     25     14
                               vv
clus                            CLUS_7
  AMP PEAK  8(7Q32.3) MUTATED        7
  AMP PEAK  8(7Q32.3) WILD-TYPE     24
D8V11, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q32.3) MUTATED        2     68     95
  AMP PEAK  8(7Q32.3) WILD-TYPE      3    128    139
D8V12, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                          68                           128
  CLUS_3                          95                           139

Clustering(9) Variable = AMP PEAK  9(8Q24.13) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.13) MUTATED        2      1      3
  AMP PEAK  9(8Q24.13) WILD-TYPE      7      9      5
D9V1, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            1                              9
  CLUS_3                            3                              5
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED        0      2      2      2
  AMP PEAK  9(8Q24.13) WILD-TYPE      7      4      8      2
D9V2, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            2                              4
  CLUS_3                            2                              8
  CLUS_4                            2                              2
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.13) MUTATED       64     15     13
  AMP PEAK  9(8Q24.13) WILD-TYPE     75     95    201
D9V3, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           64                             75
  CLUS_2                           15                             95
  CLUS_3                           13                            201
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED       75      3      5      9
  AMP PEAK  9(8Q24.13) WILD-TYPE    124     62     48    132
D9V4, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           75                            124
  CLUS_2                            3                             62
  CLUS_3                            5                             48
  CLUS_4                            9                            132
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED       14     13     19      8
  AMP PEAK  9(8Q24.13) WILD-TYPE     38     49     49     66
D9V5, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           14                             38
  CLUS_2                           13                             49
  CLUS_3                           19                             49
  CLUS_4                            8                             66
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.13) MUTATED        2     27     25
  AMP PEAK  9(8Q24.13) WILD-TYPE      6    102     94
D9V6, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                           27                            102
  CLUS_3                           25                             94
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8Q24.13) MUTATED       44      6      6     23      5      7
  AMP PEAK  9(8Q24.13) WILD-TYPE     72     83     88    103      6     18
D9V7, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.13) MUTATED       58      5     28
  AMP PEAK  9(8Q24.13) WILD-TYPE    166     75    129
D9V8, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           58                            166
  CLUS_2                            5                             75
  CLUS_3                           28                            129
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8Q24.13) MUTATED       23     10      7      3     25     14
  AMP PEAK  9(8Q24.13) WILD-TYPE     39     66     23     38    111     49
                                vv
clus                             CLUS_7
  AMP PEAK  9(8Q24.13) MUTATED        3
  AMP PEAK  9(8Q24.13) WILD-TYPE     24
D9V9, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.13) MUTATED       38      4     43
  AMP PEAK  9(8Q24.13) WILD-TYPE    156     12    182
D9V10, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           38                            156
  CLUS_2                            4                             12
  CLUS_3                           43                            182
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8Q24.13) MUTATED       32      7      4     22      9      5
  AMP PEAK  9(8Q24.13) WILD-TYPE     55     70     51    102     30     17
                                vv
clus                             CLUS_7
  AMP PEAK  9(8Q24.13) MUTATED        6
  AMP PEAK  9(8Q24.13) WILD-TYPE     25
D9V11, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.13) MUTATED        3     36     46
  AMP PEAK  9(8Q24.13) WILD-TYPE      2    160    188
D9V12, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                           36                            160
  CLUS_3                           46                            188

Clustering(10) Variable = AMP PEAK 10(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(10P15.3) MUTATED        3      1      2
  AMP PEAK 10(10P15.3) WILD-TYPE      6      9      6
D10V1, multiclass
        clus
vv       AMP PEAK 10(10P15.3) MUTATED AMP PEAK 10(10P15.3) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            1                              9
  CLUS_3                            2                              6
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(10P15.3) MUTATED        0      1      3      2
  AMP PEAK 10(10P15.3) WILD-TYPE      7      5      7      2
D10V2, multiclass
        clus
vv       AMP PEAK 10(10P15.3) MUTATED AMP PEAK 10(10P15.3) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            1                              5
  CLUS_3                            3                              7
  CLUS_4                            2                              2
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(10P15.3) MUTATED       51      5      6
  AMP PEAK 10(10P15.3) WILD-TYPE     88    105    208
D10V3, multiclass
        clus
vv       AMP PEAK 10(10P15.3) MUTATED AMP PEAK 10(10P15.3) WILD-TYPE
  CLUS_1                           51                             88
  CLUS_2                            5                            105
  CLUS_3                            6                            208
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(10P15.3) MUTATED       56      2      4      0
  AMP PEAK 10(10P15.3) WILD-TYPE    143     63     49    141
D10V4, multiclass
        clus
vv       AMP PEAK 10(10P15.3) MUTATED AMP PEAK 10(10P15.3) WILD-TYPE
  CLUS_1                           56                            143
  CLUS_2                            2                             63
  CLUS_3                            4                             49
  CLUS_4                            0                            141
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(10P15.3) MUTATED       13      9     13      5
  AMP PEAK 10(10P15.3) WILD-TYPE     39     53     55     69
D10V5, multiclass
        clus
vv       AMP PEAK 10(10P15.3) MUTATED AMP PEAK 10(10P15.3) WILD-TYPE
  CLUS_1                           13                             39
  CLUS_2                            9                             53
  CLUS_3                           13                             55
  CLUS_4                            5                             69
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(10P15.3) MUTATED        2     24     14
  AMP PEAK 10(10P15.3) WILD-TYPE      6    105    105
D10V6, multiclass
        clus
vv       AMP PEAK 10(10P15.3) MUTATED AMP PEAK 10(10P15.3) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                           24                            105
  CLUS_3                           14                            105
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(10P15.3) MUTATED       34      6      0     13      6      3
  AMP PEAK 10(10P15.3) WILD-TYPE     82     83     94    113      5     22
D10V7, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(10P15.3) MUTATED       49      0     13
  AMP PEAK 10(10P15.3) WILD-TYPE    175     80    144
D10V8, multiclass
        clus
vv       AMP PEAK 10(10P15.3) MUTATED AMP PEAK 10(10P15.3) WILD-TYPE
  CLUS_1                           49                            175
  CLUS_2                            0                             80
  CLUS_3                           13                            144
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(10P15.3) MUTATED       14      8     11      2     12     10
  AMP PEAK 10(10P15.3) WILD-TYPE     48     68     19     39    124     53
                                vv
clus                             CLUS_7
  AMP PEAK 10(10P15.3) MUTATED        2
  AMP PEAK 10(10P15.3) WILD-TYPE     25
D10V9, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(10P15.3) MUTATED       20      2     37
  AMP PEAK 10(10P15.3) WILD-TYPE    174     14    188
D10V10, multiclass
        clus
vv       AMP PEAK 10(10P15.3) MUTATED AMP PEAK 10(10P15.3) WILD-TYPE
  CLUS_1                           20                            174
  CLUS_2                            2                             14
  CLUS_3                           37                            188
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(10P15.3) MUTATED       22      5      3     12      7      7
  AMP PEAK 10(10P15.3) WILD-TYPE     65     72     52    112     32     15
                                vv
clus                             CLUS_7
  AMP PEAK 10(10P15.3) MUTATED        3
  AMP PEAK 10(10P15.3) WILD-TYPE     28
D10V11, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(10P15.3) MUTATED        0     23     36
  AMP PEAK 10(10P15.3) WILD-TYPE      5    173    198
D10V12, multiclass
        clus
vv       AMP PEAK 10(10P15.3) MUTATED AMP PEAK 10(10P15.3) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                           23                            173
  CLUS_3                           36                            198

Clustering(11) Variable = AMP PEAK 11(11Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(11Q23.3) MUTATED        0      3      1
  AMP PEAK 11(11Q23.3) WILD-TYPE      9      7      7
D11V1, multiclass
        clus
vv       AMP PEAK 11(11Q23.3) MUTATED AMP PEAK 11(11Q23.3) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            3                              7
  CLUS_3                            1                              7
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(11Q23.3) MUTATED        2      0      0      2
  AMP PEAK 11(11Q23.3) WILD-TYPE      5      6     10      2
D11V2, multiclass
        clus
vv       AMP PEAK 11(11Q23.3) MUTATED AMP PEAK 11(11Q23.3) WILD-TYPE
  CLUS_1                            2                              5
  CLUS_2                            0                              6
  CLUS_3                            0                             10
  CLUS_4                            2                              2
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(11Q23.3) MUTATED       28     14     34
  AMP PEAK 11(11Q23.3) WILD-TYPE    111     96    180
D11V3, multiclass
        clus
vv       AMP PEAK 11(11Q23.3) MUTATED AMP PEAK 11(11Q23.3) WILD-TYPE
  CLUS_1                           28                            111
  CLUS_2                           14                             96
  CLUS_3                           34                            180
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(11Q23.3) MUTATED       41      5      5     24
  AMP PEAK 11(11Q23.3) WILD-TYPE    158     60     48    117
D11V4, multiclass
        clus
vv       AMP PEAK 11(11Q23.3) MUTATED AMP PEAK 11(11Q23.3) WILD-TYPE
  CLUS_1                           41                            158
  CLUS_2                            5                             60
  CLUS_3                            5                             48
  CLUS_4                           24                            117
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(11Q23.3) MUTATED        5      9     18     13
  AMP PEAK 11(11Q23.3) WILD-TYPE     47     53     50     61
D11V5, multiclass
        clus
vv       AMP PEAK 11(11Q23.3) MUTATED AMP PEAK 11(11Q23.3) WILD-TYPE
  CLUS_1                            5                             47
  CLUS_2                            9                             53
  CLUS_3                           18                             50
  CLUS_4                           13                             61
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(11Q23.3) MUTATED        0     28     17
  AMP PEAK 11(11Q23.3) WILD-TYPE      8    101    102
D11V6, multiclass
        clus
vv       AMP PEAK 11(11Q23.3) MUTATED AMP PEAK 11(11Q23.3) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                           28                            101
  CLUS_3                           17                            102
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(11Q23.3) MUTATED       22      9     18     21      2      4
  AMP PEAK 11(11Q23.3) WILD-TYPE     94     80     76    105      9     21
D11V7, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(11Q23.3) MUTATED       34     14     28
  AMP PEAK 11(11Q23.3) WILD-TYPE    190     66    129
D11V8, multiclass
        clus
vv       AMP PEAK 11(11Q23.3) MUTATED AMP PEAK 11(11Q23.3) WILD-TYPE
  CLUS_1                           34                            190
  CLUS_2                           14                             66
  CLUS_3                           28                            129
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(11Q23.3) MUTATED       11      8      4      6     23     13
  AMP PEAK 11(11Q23.3) WILD-TYPE     51     68     26     35    113     50
                                vv
clus                             CLUS_7
  AMP PEAK 11(11Q23.3) MUTATED        6
  AMP PEAK 11(11Q23.3) WILD-TYPE     21
D11V9, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(11Q23.3) MUTATED       33      2     36
  AMP PEAK 11(11Q23.3) WILD-TYPE    161     14    189
D11V10, multiclass
        clus
vv       AMP PEAK 11(11Q23.3) MUTATED AMP PEAK 11(11Q23.3) WILD-TYPE
  CLUS_1                           33                            161
  CLUS_2                            2                             14
  CLUS_3                           36                            189
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(11Q23.3) MUTATED       18      6      8     24      8      3
  AMP PEAK 11(11Q23.3) WILD-TYPE     69     71     47    100     31     19
                                vv
clus                             CLUS_7
  AMP PEAK 11(11Q23.3) MUTATED        4
  AMP PEAK 11(11Q23.3) WILD-TYPE     27
D11V11, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(11Q23.3) MUTATED        1     33     37
  AMP PEAK 11(11Q23.3) WILD-TYPE      4    163    197
D11V12, multiclass
        clus
vv       AMP PEAK 11(11Q23.3) MUTATED AMP PEAK 11(11Q23.3) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                           33                            163
  CLUS_3                           37                            197

Clustering(12) Variable = AMP PEAK 12(12P13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12P13.32) MUTATED        3      2      2
  AMP PEAK 12(12P13.32) WILD-TYPE      6      8      6
D12V1, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                             3                               6
  CLUS_2                             2                               8
  CLUS_3                             2                               6
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12P13.32) MUTATED        0      1      3      3
  AMP PEAK 12(12P13.32) WILD-TYPE      7      5      7      1
D12V2, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                             0                               7
  CLUS_2                             1                               5
  CLUS_3                             3                               7
  CLUS_4                             3                               1
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12P13.32) MUTATED       46     13      7
  AMP PEAK 12(12P13.32) WILD-TYPE     93     97    207
D12V3, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                            46                              93
  CLUS_2                            13                              97
  CLUS_3                             7                             207
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12P13.32) MUTATED       49      9      3      5
  AMP PEAK 12(12P13.32) WILD-TYPE    150     56     50    136
D12V4, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                            49                             150
  CLUS_2                             9                              56
  CLUS_3                             3                              50
  CLUS_4                             5                             136
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12P13.32) MUTATED        9     16      9      8
  AMP PEAK 12(12P13.32) WILD-TYPE     43     46     59     66
D12V5, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                             9                              43
  CLUS_2                            16                              46
  CLUS_3                             9                              59
  CLUS_4                             8                              66
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12P13.32) MUTATED        2     25     15
  AMP PEAK 12(12P13.32) WILD-TYPE      6    104    104
D12V6, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                             2                               6
  CLUS_2                            25                             104
  CLUS_3                            15                             104
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(12P13.32) MUTATED       27     15      5     10      4      5
  AMP PEAK 12(12P13.32) WILD-TYPE     89     74     89    116      7     20
D12V7, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12P13.32) MUTATED       49      4     13
  AMP PEAK 12(12P13.32) WILD-TYPE    175     76    144
D12V8, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                            49                             175
  CLUS_2                             4                              76
  CLUS_3                            13                             144
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(12P13.32) MUTATED       16     10     12      6     10     11
  AMP PEAK 12(12P13.32) WILD-TYPE     46     66     18     35    126     52
                                 vv
clus                              CLUS_7
  AMP PEAK 12(12P13.32) MUTATED        1
  AMP PEAK 12(12P13.32) WILD-TYPE     26
D12V9, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12P13.32) MUTATED       20      1     45
  AMP PEAK 12(12P13.32) WILD-TYPE    174     15    180
D12V10, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                            20                             174
  CLUS_2                             1                              15
  CLUS_3                            45                             180
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(12P13.32) MUTATED       20     13      6      8      9      7
  AMP PEAK 12(12P13.32) WILD-TYPE     67     64     49    116     30     15
                                 vv
clus                              CLUS_7
  AMP PEAK 12(12P13.32) MUTATED        3
  AMP PEAK 12(12P13.32) WILD-TYPE     28
D12V11, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12P13.32) MUTATED        1     18     47
  AMP PEAK 12(12P13.32) WILD-TYPE      4    178    187
D12V12, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                             1                               4
  CLUS_2                            18                             178
  CLUS_3                            47                             187

Clustering(13) Variable = AMP PEAK 13(12Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12Q14.1) MUTATED        0      1      0
  AMP PEAK 13(12Q14.1) WILD-TYPE      9      9      8
D13V1, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 13(12Q14.1) MUTATED"
clus
  AMP PEAK 13(12Q14.1) MUTATED AMP PEAK 13(12Q14.1) WILD-TYPE 
                             1                             26 
                    TCGA-CS-4942                     TCGA-CS-4943 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-CS-4944                     TCGA-CS-5390 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-CS-5394                     TCGA-CS-5395 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-CS-5396                     TCGA-DB-5270 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5273                     TCGA-DB-5274 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5275                     TCGA-DB-5276 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5277                     TCGA-DB-5278 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5280                     TCGA-DB-5281 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5140                     TCGA-DH-5141 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5142                     TCGA-DH-5143 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5144                     TCGA-E1-5302 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-E1-5303                     TCGA-E1-5304 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5322 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12Q14.1) MUTATED        1      0      0      0
  AMP PEAK 13(12Q14.1) WILD-TYPE      6      6     10      4
D13V2, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 13(12Q14.1) MUTATED"
clus
  AMP PEAK 13(12Q14.1) MUTATED AMP PEAK 13(12Q14.1) WILD-TYPE 
                             1                             26 
                    TCGA-CS-4942                     TCGA-CS-4943 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-CS-4944                     TCGA-CS-5390 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-CS-5394                     TCGA-CS-5395 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-CS-5396                     TCGA-DB-5270 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5273                     TCGA-DB-5274 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5275                     TCGA-DB-5276 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5277                     TCGA-DB-5278 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5280                     TCGA-DB-5281 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5140                     TCGA-DH-5141 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5142                     TCGA-DH-5143 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5144                     TCGA-E1-5302 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-E1-5303                     TCGA-E1-5304 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5322 
"AMP PEAK 13(12Q14.1) WILD-TYPE" "AMP PEAK 13(12Q14.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12Q14.1) MUTATED       10     19      5
  AMP PEAK 13(12Q14.1) WILD-TYPE    129     91    209
D13V3, multiclass
        clus
vv       AMP PEAK 13(12Q14.1) MUTATED AMP PEAK 13(12Q14.1) WILD-TYPE
  CLUS_1                           10                            129
  CLUS_2                           19                             91
  CLUS_3                            5                            209
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12Q14.1) MUTATED       13     16      1      4
  AMP PEAK 13(12Q14.1) WILD-TYPE    186     49     52    137
D13V4, multiclass
        clus
vv       AMP PEAK 13(12Q14.1) MUTATED AMP PEAK 13(12Q14.1) WILD-TYPE
  CLUS_1                           13                            186
  CLUS_2                           16                             49
  CLUS_3                            1                             52
  CLUS_4                            4                            137
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12Q14.1) MUTATED        2      9      1      3
  AMP PEAK 13(12Q14.1) WILD-TYPE     50     53     67     71
D13V5, multiclass
        clus
vv       AMP PEAK 13(12Q14.1) MUTATED AMP PEAK 13(12Q14.1) WILD-TYPE
  CLUS_1                            2                             50
  CLUS_2                            9                             53
  CLUS_3                            1                             67
  CLUS_4                            3                             71
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12Q14.1) MUTATED        0      9      6
  AMP PEAK 13(12Q14.1) WILD-TYPE      8    120    113
D13V6, multiclass
        clus
vv       AMP PEAK 13(12Q14.1) MUTATED AMP PEAK 13(12Q14.1) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                            9                            120
  CLUS_3                            6                            113
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(12Q14.1) MUTATED        3     20      4      3      3      1
  AMP PEAK 13(12Q14.1) WILD-TYPE    113     69     90    123      8     24
D13V7, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12Q14.1) MUTATED       26      3      5
  AMP PEAK 13(12Q14.1) WILD-TYPE    198     77    152
D13V8, multiclass
        clus
vv       AMP PEAK 13(12Q14.1) MUTATED AMP PEAK 13(12Q14.1) WILD-TYPE
  CLUS_1                           26                            198
  CLUS_2                            3                             77
  CLUS_3                            5                            152
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(12Q14.1) MUTATED        2     16      6      1      4      3
  AMP PEAK 13(12Q14.1) WILD-TYPE     60     60     24     40    132     60
                                vv
clus                             CLUS_7
  AMP PEAK 13(12Q14.1) MUTATED        1
  AMP PEAK 13(12Q14.1) WILD-TYPE     26
D13V9, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12Q14.1) MUTATED        6      1     26
  AMP PEAK 13(12Q14.1) WILD-TYPE    188     15    199
D13V10, multiclass
        clus
vv       AMP PEAK 13(12Q14.1) MUTATED AMP PEAK 13(12Q14.1) WILD-TYPE
  CLUS_1                            6                            188
  CLUS_2                            1                             15
  CLUS_3                           26                            199
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(12Q14.1) MUTATED        2     17      1      2      4      5
  AMP PEAK 13(12Q14.1) WILD-TYPE     85     60     54    122     35     17
                                vv
clus                             CLUS_7
  AMP PEAK 13(12Q14.1) MUTATED        2
  AMP PEAK 13(12Q14.1) WILD-TYPE     29
D13V11, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12Q14.1) MUTATED        1      8     24
  AMP PEAK 13(12Q14.1) WILD-TYPE      4    188    210
D13V12, multiclass
        clus
vv       AMP PEAK 13(12Q14.1) MUTATED AMP PEAK 13(12Q14.1) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            8                            188
  CLUS_3                           24                            210

Clustering(14) Variable = AMP PEAK 14(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q34) MUTATED        0      0      1
  AMP PEAK 14(13Q34) WILD-TYPE      9     10      7
D14V1, multiclass
[1] "Remove cluster labels:"     "AMP PEAK 14(13Q34) MUTATED"
clus
  AMP PEAK 14(13Q34) MUTATED AMP PEAK 14(13Q34) WILD-TYPE 
                           1                           26 
                  TCGA-CS-4942                   TCGA-CS-4943 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-CS-4944                   TCGA-CS-5390 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-CS-5394                   TCGA-CS-5395 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-CS-5396                   TCGA-DB-5270 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-DB-5273                   TCGA-DB-5274 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-DB-5275                   TCGA-DB-5276 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-DB-5278                   TCGA-DB-5280 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-DB-5281                   TCGA-DH-5140 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-DH-5141                   TCGA-DH-5142 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-DH-5143                   TCGA-DH-5144 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-E1-5302                   TCGA-E1-5303 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-E1-5304                   TCGA-E1-5311 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-E1-5318                   TCGA-E1-5322 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q34) MUTATED        0      0      0      1
  AMP PEAK 14(13Q34) WILD-TYPE      7      6     10      3
D14V2, multiclass
[1] "Remove cluster labels:"     "AMP PEAK 14(13Q34) MUTATED"
clus
  AMP PEAK 14(13Q34) MUTATED AMP PEAK 14(13Q34) WILD-TYPE 
                           1                           26 
                  TCGA-CS-4942                   TCGA-CS-4943 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-CS-4944                   TCGA-CS-5390 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-CS-5394                   TCGA-CS-5395 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-CS-5396                   TCGA-DB-5270 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-DB-5273                   TCGA-DB-5274 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-DB-5275                   TCGA-DB-5276 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-DB-5278                   TCGA-DB-5280 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-DB-5281                   TCGA-DH-5140 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-DH-5141                   TCGA-DH-5142 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-DH-5143                   TCGA-DH-5144 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-E1-5302                   TCGA-E1-5303 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-E1-5304                   TCGA-E1-5311 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                  TCGA-E1-5318                   TCGA-E1-5322 
"AMP PEAK 14(13Q34) WILD-TYPE" "AMP PEAK 14(13Q34) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q34) MUTATED       11      8      0
  AMP PEAK 14(13Q34) WILD-TYPE    128    102    214
D14V3, multiclass
        clus
vv       AMP PEAK 14(13Q34) MUTATED AMP PEAK 14(13Q34) WILD-TYPE
  CLUS_1                         11                          128
  CLUS_2                          8                          102
  CLUS_3                          0                          214
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q34) MUTATED       16      3      0      0
  AMP PEAK 14(13Q34) WILD-TYPE    183     62     53    141
D14V4, multiclass
        clus
vv       AMP PEAK 14(13Q34) MUTATED AMP PEAK 14(13Q34) WILD-TYPE
  CLUS_1                         16                          183
  CLUS_2                          3                           62
  CLUS_3                          0                           53
  CLUS_4                          0                          141
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q34) MUTATED        2      7      3      2
  AMP PEAK 14(13Q34) WILD-TYPE     50     55     65     72
D14V5, multiclass
        clus
vv       AMP PEAK 14(13Q34) MUTATED AMP PEAK 14(13Q34) WILD-TYPE
  CLUS_1                          2                           50
  CLUS_2                          7                           55
  CLUS_3                          3                           65
  CLUS_4                          2                           72
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q34) MUTATED        0     10      4
  AMP PEAK 14(13Q34) WILD-TYPE      8    119    115
D14V6, multiclass
        clus
vv       AMP PEAK 14(13Q34) MUTATED AMP PEAK 14(13Q34) WILD-TYPE
  CLUS_1                          0                            8
  CLUS_2                         10                          119
  CLUS_3                          4                          115
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(13Q34) MUTATED        6      6      0      4      2      1
  AMP PEAK 14(13Q34) WILD-TYPE    110     83     94    122      9     24
D14V7, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q34) MUTATED       15      0      4
  AMP PEAK 14(13Q34) WILD-TYPE    209     80    153
D14V8, multiclass
        clus
vv       AMP PEAK 14(13Q34) MUTATED AMP PEAK 14(13Q34) WILD-TYPE
  CLUS_1                         15                          209
  CLUS_2                          0                           80
  CLUS_3                          4                          153
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 14(13Q34) MUTATED        4      5      1      1      4      3      1
  AMP PEAK 14(13Q34) WILD-TYPE     58     71     29     40    132     60     26
D14V9, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q34) MUTATED        6      0     13
  AMP PEAK 14(13Q34) WILD-TYPE    188     16    212
D14V10, multiclass
        clus
vv       AMP PEAK 14(13Q34) MUTATED AMP PEAK 14(13Q34) WILD-TYPE
  CLUS_1                          6                          188
  CLUS_2                          0                           16
  CLUS_3                         13                          212
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 14(13Q34) MUTATED        5      5      1      4      2      1      1
  AMP PEAK 14(13Q34) WILD-TYPE     82     72     54    120     37     21     30
D14V11, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q34) MUTATED        0      5     14
  AMP PEAK 14(13Q34) WILD-TYPE      5    191    220
D14V12, multiclass
        clus
vv       AMP PEAK 14(13Q34) MUTATED AMP PEAK 14(13Q34) WILD-TYPE
  CLUS_1                          0                            5
  CLUS_2                          5                          191
  CLUS_3                         14                          220

Clustering(15) Variable = AMP PEAK 15(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(15Q26.3) MUTATED        1      1      1
  AMP PEAK 15(15Q26.3) WILD-TYPE      8      9      7
D15V1, multiclass
        clus
vv       AMP PEAK 15(15Q26.3) MUTATED AMP PEAK 15(15Q26.3) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            1                              9
  CLUS_3                            1                              7
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(15Q26.3) MUTATED        0      0      1      2
  AMP PEAK 15(15Q26.3) WILD-TYPE      7      6      9      2
D15V2, multiclass
        clus
vv       AMP PEAK 15(15Q26.3) MUTATED AMP PEAK 15(15Q26.3) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            0                              6
  CLUS_3                            1                              9
  CLUS_4                            2                              2
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(15Q26.3) MUTATED       13      5      0
  AMP PEAK 15(15Q26.3) WILD-TYPE    126    105    214
D15V3, multiclass
        clus
vv       AMP PEAK 15(15Q26.3) MUTATED AMP PEAK 15(15Q26.3) WILD-TYPE
  CLUS_1                           13                            126
  CLUS_2                            5                            105
  CLUS_3                            0                            214
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(15Q26.3) MUTATED       15      3      0      0
  AMP PEAK 15(15Q26.3) WILD-TYPE    184     62     53    141
D15V4, multiclass
        clus
vv       AMP PEAK 15(15Q26.3) MUTATED AMP PEAK 15(15Q26.3) WILD-TYPE
  CLUS_1                           15                            184
  CLUS_2                            3                             62
  CLUS_3                            0                             53
  CLUS_4                            0                            141
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(15Q26.3) MUTATED        1      5      2      1
  AMP PEAK 15(15Q26.3) WILD-TYPE     51     57     66     73
D15V5, multiclass
        clus
vv       AMP PEAK 15(15Q26.3) MUTATED AMP PEAK 15(15Q26.3) WILD-TYPE
  CLUS_1                            1                             51
  CLUS_2                            5                             57
  CLUS_3                            2                             66
  CLUS_4                            1                             73
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(15Q26.3) MUTATED        0      6      3
  AMP PEAK 15(15Q26.3) WILD-TYPE      8    123    116
D15V6, multiclass
        clus
vv       AMP PEAK 15(15Q26.3) MUTATED AMP PEAK 15(15Q26.3) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                            6                            123
  CLUS_3                            3                            116
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(15Q26.3) MUTATED        6      4      0      3      4      1
  AMP PEAK 15(15Q26.3) WILD-TYPE    110     85     94    123      7     24
D15V7, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(15Q26.3) MUTATED       15      0      3
  AMP PEAK 15(15Q26.3) WILD-TYPE    209     80    154
D15V8, multiclass
        clus
vv       AMP PEAK 15(15Q26.3) MUTATED AMP PEAK 15(15Q26.3) WILD-TYPE
  CLUS_1                           15                            209
  CLUS_2                            0                             80
  CLUS_3                            3                            154
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(15Q26.3) MUTATED        1      5      5      1      4      2
  AMP PEAK 15(15Q26.3) WILD-TYPE     61     71     25     40    132     61
                                vv
clus                             CLUS_7
  AMP PEAK 15(15Q26.3) MUTATED        0
  AMP PEAK 15(15Q26.3) WILD-TYPE     27
D15V9, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(15Q26.3) MUTATED        7      0     11
  AMP PEAK 15(15Q26.3) WILD-TYPE    187     16    214
D15V10, multiclass
        clus
vv       AMP PEAK 15(15Q26.3) MUTATED AMP PEAK 15(15Q26.3) WILD-TYPE
  CLUS_1                            7                            187
  CLUS_2                            0                             16
  CLUS_3                           11                            214
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(15Q26.3) MUTATED        4      4      1      3      1      3
  AMP PEAK 15(15Q26.3) WILD-TYPE     83     73     54    121     38     19
                                vv
clus                             CLUS_7
  AMP PEAK 15(15Q26.3) MUTATED        2
  AMP PEAK 15(15Q26.3) WILD-TYPE     29
D15V11, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(15Q26.3) MUTATED        0      7     11
  AMP PEAK 15(15Q26.3) WILD-TYPE      5    189    223
D15V12, multiclass
        clus
vv       AMP PEAK 15(15Q26.3) MUTATED AMP PEAK 15(15Q26.3) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                            7                            189
  CLUS_3                           11                            223

Clustering(16) Variable = AMP PEAK 16(17Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q25.1) MUTATED        0      2      0
  AMP PEAK 16(17Q25.1) WILD-TYPE      9      8      8
D16V1, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 16(17Q25.1) MUTATED"
clus
  AMP PEAK 16(17Q25.1) MUTATED AMP PEAK 16(17Q25.1) WILD-TYPE 
                             2                             25 
                    TCGA-CS-4942                     TCGA-CS-4943 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-CS-4944                     TCGA-CS-5390 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-CS-5394                     TCGA-CS-5395 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-CS-5396                     TCGA-DB-5270 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5273                     TCGA-DB-5274 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5275                     TCGA-DB-5276 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5277                     TCGA-DB-5278 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5280                     TCGA-DB-5281 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-DH-5141                     TCGA-DH-5142 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-DH-5143                     TCGA-DH-5144 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5302                     TCGA-E1-5303 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5318 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5322 
"AMP PEAK 16(17Q25.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(17Q25.1) MUTATED        0      0      0      2
  AMP PEAK 16(17Q25.1) WILD-TYPE      7      6     10      2
D16V2, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 16(17Q25.1) MUTATED"
clus
  AMP PEAK 16(17Q25.1) MUTATED AMP PEAK 16(17Q25.1) WILD-TYPE 
                             2                             25 
                    TCGA-CS-4942                     TCGA-CS-4943 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-CS-4944                     TCGA-CS-5390 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-CS-5394                     TCGA-CS-5395 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-CS-5396                     TCGA-DB-5270 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5273                     TCGA-DB-5274 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5275                     TCGA-DB-5276 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5277                     TCGA-DB-5278 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5280                     TCGA-DB-5281 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-DH-5141                     TCGA-DH-5142 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-DH-5143                     TCGA-DH-5144 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5302                     TCGA-E1-5303 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5318 
"AMP PEAK 16(17Q25.1) WILD-TYPE" "AMP PEAK 16(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5322 
"AMP PEAK 16(17Q25.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q25.1) MUTATED       17      9      9
  AMP PEAK 16(17Q25.1) WILD-TYPE    122    101    205
D16V3, multiclass
        clus
vv       AMP PEAK 16(17Q25.1) MUTATED AMP PEAK 16(17Q25.1) WILD-TYPE
  CLUS_1                           17                            122
  CLUS_2                            9                            101
  CLUS_3                            9                            205
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(17Q25.1) MUTATED       18      7      2      8
  AMP PEAK 16(17Q25.1) WILD-TYPE    181     58     51    133
D16V4, multiclass
        clus
vv       AMP PEAK 16(17Q25.1) MUTATED AMP PEAK 16(17Q25.1) WILD-TYPE
  CLUS_1                           18                            181
  CLUS_2                            7                             58
  CLUS_3                            2                             51
  CLUS_4                            8                            133
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(17Q25.1) MUTATED        4      6      2      3
  AMP PEAK 16(17Q25.1) WILD-TYPE     48     56     66     71
D16V5, multiclass
        clus
vv       AMP PEAK 16(17Q25.1) MUTATED AMP PEAK 16(17Q25.1) WILD-TYPE
  CLUS_1                            4                             48
  CLUS_2                            6                             56
  CLUS_3                            2                             66
  CLUS_4                            3                             71
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q25.1) MUTATED        0      7      8
  AMP PEAK 16(17Q25.1) WILD-TYPE      8    122    111
D16V6, multiclass
        clus
vv       AMP PEAK 16(17Q25.1) MUTATED AMP PEAK 16(17Q25.1) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                            7                            122
  CLUS_3                            8                            111
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(17Q25.1) MUTATED        7      9      6      7      6      0
  AMP PEAK 16(17Q25.1) WILD-TYPE    109     80     88    119      5     25
D16V7, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q25.1) MUTATED       22      5      8
  AMP PEAK 16(17Q25.1) WILD-TYPE    202     75    149
D16V8, multiclass
        clus
vv       AMP PEAK 16(17Q25.1) MUTATED AMP PEAK 16(17Q25.1) WILD-TYPE
  CLUS_1                           22                            202
  CLUS_2                            5                             75
  CLUS_3                            8                            149
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(17Q25.1) MUTATED        4      9      5      5      7      3
  AMP PEAK 16(17Q25.1) WILD-TYPE     58     67     25     36    129     60
                                vv
clus                             CLUS_7
  AMP PEAK 16(17Q25.1) MUTATED        0
  AMP PEAK 16(17Q25.1) WILD-TYPE     27
D16V9, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q25.1) MUTATED       10      1     22
  AMP PEAK 16(17Q25.1) WILD-TYPE    184     15    203
D16V10, multiclass
        clus
vv       AMP PEAK 16(17Q25.1) MUTATED AMP PEAK 16(17Q25.1) WILD-TYPE
  CLUS_1                           10                            184
  CLUS_2                            1                             15
  CLUS_3                           22                            203
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(17Q25.1) MUTATED        6      9      6      6      3      3
  AMP PEAK 16(17Q25.1) WILD-TYPE     81     68     49    118     36     19
                                vv
clus                             CLUS_7
  AMP PEAK 16(17Q25.1) MUTATED        0
  AMP PEAK 16(17Q25.1) WILD-TYPE     31
D16V11, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q25.1) MUTATED        3      8     22
  AMP PEAK 16(17Q25.1) WILD-TYPE      2    188    212
D16V12, multiclass
        clus
vv       AMP PEAK 16(17Q25.1) MUTATED AMP PEAK 16(17Q25.1) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            8                            188
  CLUS_3                           22                            212

Clustering(17) Variable = AMP PEAK 17(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(19P13.3) MUTATED        1      6      2
  AMP PEAK 17(19P13.3) WILD-TYPE      8      4      6
D17V1, multiclass
        clus
vv       AMP PEAK 17(19P13.3) MUTATED AMP PEAK 17(19P13.3) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            6                              4
  CLUS_3                            2                              6
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(19P13.3) MUTATED        5      1      2      1
  AMP PEAK 17(19P13.3) WILD-TYPE      2      5      8      3
D17V2, multiclass
        clus
vv       AMP PEAK 17(19P13.3) MUTATED AMP PEAK 17(19P13.3) WILD-TYPE
  CLUS_1                            5                              2
  CLUS_2                            1                              5
  CLUS_3                            2                              8
  CLUS_4                            1                              3
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(19P13.3) MUTATED        9     36     70
  AMP PEAK 17(19P13.3) WILD-TYPE    130     74    144
D17V3, multiclass
        clus
vv       AMP PEAK 17(19P13.3) MUTATED AMP PEAK 17(19P13.3) WILD-TYPE
  CLUS_1                            9                            130
  CLUS_2                           36                             74
  CLUS_3                           70                            144
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(19P13.3) MUTATED       17     24      4     66
  AMP PEAK 17(19P13.3) WILD-TYPE    182     41     49     75
D17V4, multiclass
        clus
vv       AMP PEAK 17(19P13.3) MUTATED AMP PEAK 17(19P13.3) WILD-TYPE
  CLUS_1                           17                            182
  CLUS_2                           24                             41
  CLUS_3                            4                             49
  CLUS_4                           66                             75
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(19P13.3) MUTATED       11     16     15     15
  AMP PEAK 17(19P13.3) WILD-TYPE     41     46     53     59
D17V5, multiclass
        clus
vv       AMP PEAK 17(19P13.3) MUTATED AMP PEAK 17(19P13.3) WILD-TYPE
  CLUS_1                           11                             41
  CLUS_2                           16                             46
  CLUS_3                           15                             53
  CLUS_4                           15                             59
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(19P13.3) MUTATED        1     32     24
  AMP PEAK 17(19P13.3) WILD-TYPE      7     97     95
D17V6, multiclass
        clus
vv       AMP PEAK 17(19P13.3) MUTATED AMP PEAK 17(19P13.3) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                           32                             97
  CLUS_3                           24                             95
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(19P13.3) MUTATED        9     26     47     31      1      1
  AMP PEAK 17(19P13.3) WILD-TYPE    107     63     47     95     10     24
D17V7, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(19P13.3) MUTATED       37     37     41
  AMP PEAK 17(19P13.3) WILD-TYPE    187     43    116
D17V8, multiclass
        clus
vv       AMP PEAK 17(19P13.3) MUTATED AMP PEAK 17(19P13.3) WILD-TYPE
  CLUS_1                           37                            187
  CLUS_2                           37                             43
  CLUS_3                           41                            116
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(19P13.3) MUTATED        5     22      5     21     34     15
  AMP PEAK 17(19P13.3) WILD-TYPE     57     54     25     20    102     48
                                vv
clus                             CLUS_7
  AMP PEAK 17(19P13.3) MUTATED        6
  AMP PEAK 17(19P13.3) WILD-TYPE     21
D17V9, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(19P13.3) MUTATED       47      4     57
  AMP PEAK 17(19P13.3) WILD-TYPE    147     12    168
D17V10, multiclass
        clus
vv       AMP PEAK 17(19P13.3) MUTATED AMP PEAK 17(19P13.3) WILD-TYPE
  CLUS_1                           47                            147
  CLUS_2                            4                             12
  CLUS_3                           57                            168
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(19P13.3) MUTATED        7     24     28     31     10      3
  AMP PEAK 17(19P13.3) WILD-TYPE     80     53     27     93     29     19
                                vv
clus                             CLUS_7
  AMP PEAK 17(19P13.3) MUTATED        5
  AMP PEAK 17(19P13.3) WILD-TYPE     26
D17V11, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(19P13.3) MUTATED        0     50     58
  AMP PEAK 17(19P13.3) WILD-TYPE      5    146    176
D17V12, multiclass
        clus
vv       AMP PEAK 17(19P13.3) MUTATED AMP PEAK 17(19P13.3) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                           50                            146
  CLUS_3                           58                            176

Clustering(18) Variable = AMP PEAK 18(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.2) MUTATED        1      6      2
  AMP PEAK 18(19P13.2) WILD-TYPE      8      4      6
D18V1, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            6                              4
  CLUS_3                            2                              6
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.2) MUTATED        5      1      2      1
  AMP PEAK 18(19P13.2) WILD-TYPE      2      5      8      3
D18V2, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                            5                              2
  CLUS_2                            1                              5
  CLUS_3                            2                              8
  CLUS_4                            1                              3
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.2) MUTATED        5     39     65
  AMP PEAK 18(19P13.2) WILD-TYPE    134     71    149
D18V3, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                            5                            134
  CLUS_2                           39                             71
  CLUS_3                           65                            149
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.2) MUTATED       11     27      4     63
  AMP PEAK 18(19P13.2) WILD-TYPE    188     38     49     78
D18V4, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                           11                            188
  CLUS_2                           27                             38
  CLUS_3                            4                             49
  CLUS_4                           63                             78
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.2) MUTATED        9     19     13     14
  AMP PEAK 18(19P13.2) WILD-TYPE     43     43     55     60
D18V5, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                            9                             43
  CLUS_2                           19                             43
  CLUS_3                           13                             55
  CLUS_4                           14                             60
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.2) MUTATED        1     33     21
  AMP PEAK 18(19P13.2) WILD-TYPE      7     96     98
D18V6, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                           33                             96
  CLUS_3                           21                             98
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(19P13.2) MUTATED        5     30     45     26      1      2
  AMP PEAK 18(19P13.2) WILD-TYPE    111     59     49    100     10     23
D18V7, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.2) MUTATED       37     36     36
  AMP PEAK 18(19P13.2) WILD-TYPE    187     44    121
D18V8, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                           37                            187
  CLUS_2                           36                             44
  CLUS_3                           36                            121
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(19P13.2) MUTATED        4     26      4     21     30     13
  AMP PEAK 18(19P13.2) WILD-TYPE     58     50     26     20    106     50
                                vv
clus                             CLUS_7
  AMP PEAK 18(19P13.2) MUTATED        5
  AMP PEAK 18(19P13.2) WILD-TYPE     22
D18V9, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.2) MUTATED       40      4     59
  AMP PEAK 18(19P13.2) WILD-TYPE    154     12    166
D18V10, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                           40                            154
  CLUS_2                            4                             12
  CLUS_3                           59                            166
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(19P13.2) MUTATED        6     28     27     27      8      3
  AMP PEAK 18(19P13.2) WILD-TYPE     81     49     28     97     31     19
                                vv
clus                             CLUS_7
  AMP PEAK 18(19P13.2) MUTATED        4
  AMP PEAK 18(19P13.2) WILD-TYPE     27
D18V11, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.2) MUTATED        0     43     60
  AMP PEAK 18(19P13.2) WILD-TYPE      5    153    174
D18V12, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                           43                            153
  CLUS_3                           60                            174

Clustering(19) Variable = AMP PEAK 19(XP11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(XP11.22) MUTATED        1      1      2
  AMP PEAK 19(XP11.22) WILD-TYPE      8      9      6
D19V1, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            1                              9
  CLUS_3                            2                              6
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(XP11.22) MUTATED        1      1      1      1
  AMP PEAK 19(XP11.22) WILD-TYPE      6      5      9      3
D19V2, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            1                              5
  CLUS_3                            1                              9
  CLUS_4                            1                              3
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(XP11.22) MUTATED       35      5      7
  AMP PEAK 19(XP11.22) WILD-TYPE    104    105    207
D19V3, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                           35                            104
  CLUS_2                            5                            105
  CLUS_3                            7                            207
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(XP11.22) MUTATED       40      3      3      1
  AMP PEAK 19(XP11.22) WILD-TYPE    159     62     50    140
D19V4, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                           40                            159
  CLUS_2                            3                             62
  CLUS_3                            3                             50
  CLUS_4                            1                            140
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(XP11.22) MUTATED        4     10     11      4
  AMP PEAK 19(XP11.22) WILD-TYPE     48     52     57     70
D19V5, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                            4                             48
  CLUS_2                           10                             52
  CLUS_3                           11                             57
  CLUS_4                            4                             70
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(XP11.22) MUTATED        0     19     10
  AMP PEAK 19(XP11.22) WILD-TYPE      8    110    109
D19V6, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                           19                            110
  CLUS_3                           10                            109
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(XP11.22) MUTATED       21     10      1     10      2      3
  AMP PEAK 19(XP11.22) WILD-TYPE     95     79     93    116      9     22
D19V7, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(XP11.22) MUTATED       34      1     12
  AMP PEAK 19(XP11.22) WILD-TYPE    190     79    145
D19V8, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                           34                            190
  CLUS_2                            1                             79
  CLUS_3                           12                            145
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(XP11.22) MUTATED        9     10      4      1     12      7
  AMP PEAK 19(XP11.22) WILD-TYPE     53     66     26     40    124     56
                                vv
clus                             CLUS_7
  AMP PEAK 19(XP11.22) MUTATED        0
  AMP PEAK 19(XP11.22) WILD-TYPE     27
D19V9, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(XP11.22) MUTATED       15      3     25
  AMP PEAK 19(XP11.22) WILD-TYPE    179     13    200
D19V10, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                           15                            179
  CLUS_2                            3                             13
  CLUS_3                           25                            200
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(XP11.22) MUTATED       13     10      1      9      3      4
  AMP PEAK 19(XP11.22) WILD-TYPE     74     67     54    115     36     18
                                vv
clus                             CLUS_7
  AMP PEAK 19(XP11.22) MUTATED        3
  AMP PEAK 19(XP11.22) WILD-TYPE     28
D19V11, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(XP11.22) MUTATED        2     16     25
  AMP PEAK 19(XP11.22) WILD-TYPE      3    180    209
D19V12, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                           16                            180
  CLUS_3                           25                            209

Clustering(20) Variable = DEL PEAK  1(1P36.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED        1      8      2
  DEL PEAK  1(1P36.23) WILD-TYPE      8      2      6
D20V1, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            8                              2
  CLUS_3                            2                              6
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.23) MUTATED        7      2      1      1
  DEL PEAK  1(1P36.23) WILD-TYPE      0      4      9      3
D20V2, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            7                              0
  CLUS_2                            2                              4
  CLUS_3                            1                              9
  CLUS_4                            1                              3
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       10     32    152
  DEL PEAK  1(1P36.23) WILD-TYPE    129     78     62
D20V3, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           10                            129
  CLUS_2                           32                             78
  CLUS_3                          152                             62
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.23) MUTATED       12     19     18    141
  DEL PEAK  1(1P36.23) WILD-TYPE    187     46     35      0
D20V4, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           12                            187
  CLUS_2                           19                             46
  CLUS_3                           18                             35
  CLUS_4                          141                              0
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.23) MUTATED        8     22     29     36
  DEL PEAK  1(1P36.23) WILD-TYPE     44     40     39     38
D20V5, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            8                             44
  CLUS_2                           22                             40
  CLUS_3                           29                             39
  CLUS_4                           36                             38
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED        4     45     46
  DEL PEAK  1(1P36.23) WILD-TYPE      4     84     73
D20V6, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                           45                             84
  CLUS_3                           46                             73
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.23) MUTATED        6     22     93     61      1     11
  DEL PEAK  1(1P36.23) WILD-TYPE    110     67      1     65     10     14
D20V7, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       30     80     84
  DEL PEAK  1(1P36.23) WILD-TYPE    194      0     73
D20V8, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           30                            194
  CLUS_2                           80                              0
  CLUS_3                           84                             73
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.23) MUTATED        4     22      2     38     73     25
  DEL PEAK  1(1P36.23) WILD-TYPE     58     54     28      3     63     38
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.23) MUTATED       17
  DEL PEAK  1(1P36.23) WILD-TYPE     10
D20V9, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED      103      6     72
  DEL PEAK  1(1P36.23) WILD-TYPE     91     10    153
D20V10, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                          103                             91
  CLUS_2                            6                             10
  CLUS_3                           72                            153
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.23) MUTATED        4     28     50     67     14      1
  DEL PEAK  1(1P36.23) WILD-TYPE     83     49      5     57     25     21
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.23) MUTATED       17
  DEL PEAK  1(1P36.23) WILD-TYPE     14
D20V11, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED        1    101     79
  DEL PEAK  1(1P36.23) WILD-TYPE      4     95    155
D20V12, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                          101                             95
  CLUS_3                           79                            155

Clustering(21) Variable = DEL PEAK  2(1P32.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED        1      7      2
  DEL PEAK  2(1P32.3) WILD-TYPE      8      3      6
D21V1, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           7                             3
  CLUS_3                           2                             6
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED        7      2      1      0
  DEL PEAK  2(1P32.3) WILD-TYPE      0      4      9      4
D21V2, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           7                             0
  CLUS_2                           2                             4
  CLUS_3                           1                             9
  CLUS_4                           0                             4
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED        6     23    150
  DEL PEAK  2(1P32.3) WILD-TYPE    133     87     64
D21V3, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           6                           133
  CLUS_2                          23                            87
  CLUS_3                         150                            64
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED        5     12     18    141
  DEL PEAK  2(1P32.3) WILD-TYPE    194     53     35      0
D21V4, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           5                           194
  CLUS_2                          12                            53
  CLUS_3                          18                            35
  CLUS_4                         141                             0
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED        8     16     28     35
  DEL PEAK  2(1P32.3) WILD-TYPE     44     46     40     39
D21V5, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           8                            44
  CLUS_2                          16                            46
  CLUS_3                          28                            40
  CLUS_4                          35                            39
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED        4     38     45
  DEL PEAK  2(1P32.3) WILD-TYPE      4     91     74
D21V6, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           4                             4
  CLUS_2                          38                            91
  CLUS_3                          45                            74
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P32.3) MUTATED        4     16     93     56      0     10
  DEL PEAK  2(1P32.3) WILD-TYPE    112     73      1     70     11     15
D21V7, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED       21     80     78
  DEL PEAK  2(1P32.3) WILD-TYPE    203      0     79
D21V8, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                          21                           203
  CLUS_2                          80                             0
  CLUS_3                          78                            79
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P32.3) MUTATED        4     17      2     37     68     23
  DEL PEAK  2(1P32.3) WILD-TYPE     58     59     28      4     68     40
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P32.3) MUTATED       17
  DEL PEAK  2(1P32.3) WILD-TYPE     10
D21V9, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED       98      6     64
  DEL PEAK  2(1P32.3) WILD-TYPE     96     10    161
D21V10, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                          98                            96
  CLUS_2                           6                            10
  CLUS_3                          64                           161
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P32.3) MUTATED        4     21     49     63     14      1
  DEL PEAK  2(1P32.3) WILD-TYPE     83     56      6     61     25     21
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P32.3) MUTATED       16
  DEL PEAK  2(1P32.3) WILD-TYPE     15
D21V11, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED        0     95     73
  DEL PEAK  2(1P32.3) WILD-TYPE      5    101    161
D21V12, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                          95                           101
  CLUS_3                          73                           161

Clustering(22) Variable = DEL PEAK  3(1Q43) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        2      0      0
  DEL PEAK  3(1Q43) WILD-TYPE      7     10      8
D22V1, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  3(1Q43) MUTATED"
clus
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                          2                          25 
                 TCGA-CS-4942                  TCGA-CS-4943 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-4944                  TCGA-CS-5390 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-5394                  TCGA-CS-5395 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-5396                  TCGA-DB-5270 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5273                  TCGA-DB-5274 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5275                  TCGA-DB-5276 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5277                  TCGA-DB-5278 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5280                  TCGA-DB-5281 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5140                  TCGA-DH-5141 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5142                  TCGA-DH-5143 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5144                  TCGA-E1-5303 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-E1-5304                  TCGA-E1-5311 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-E1-5318 
"DEL PEAK  3(1Q43) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED        0      0      2      0
  DEL PEAK  3(1Q43) WILD-TYPE      7      6      8      4
D22V2, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  3(1Q43) MUTATED"
clus
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                          2                          25 
                 TCGA-CS-4942                  TCGA-CS-4943 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-4944                  TCGA-CS-5390 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-5394                  TCGA-CS-5395 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-5396                  TCGA-DB-5270 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5273                  TCGA-DB-5274 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5275                  TCGA-DB-5276 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5277                  TCGA-DB-5278 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5280                  TCGA-DB-5281 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5140                  TCGA-DH-5141 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5142                  TCGA-DH-5143 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5144                  TCGA-E1-5303 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-E1-5304                  TCGA-E1-5311 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-E1-5318 
"DEL PEAK  3(1Q43) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED       14      6      9
  DEL PEAK  3(1Q43) WILD-TYPE    125    104    205
D22V3, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        14                         125
  CLUS_2                         6                         104
  CLUS_3                         9                         205
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED       19      2      5      3
  DEL PEAK  3(1Q43) WILD-TYPE    180     63     48    138
D22V4, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        19                         180
  CLUS_2                         2                          63
  CLUS_3                         5                          48
  CLUS_4                         3                         138
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED        2      8      2      3
  DEL PEAK  3(1Q43) WILD-TYPE     50     54     66     71
D22V5, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         2                          50
  CLUS_2                         8                          54
  CLUS_3                         2                          66
  CLUS_4                         3                          71
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        0     10      5
  DEL PEAK  3(1Q43) WILD-TYPE      8    119    114
D22V6, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         0                           8
  CLUS_2                        10                         119
  CLUS_3                         5                         114
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q43) MUTATED       12      5      1      8      1      2
  DEL PEAK  3(1Q43) WILD-TYPE    104     84     93    118     10     23
D22V7, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED       20      1      8
  DEL PEAK  3(1Q43) WILD-TYPE    204     79    149
D22V8, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        20                         204
  CLUS_2                         1                          79
  CLUS_3                         8                         149
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  3(1Q43) MUTATED        8      5      3      0      8      2      1
  DEL PEAK  3(1Q43) WILD-TYPE     54     71     27     41    128     61     26
D22V9, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED       10      1     16
  DEL PEAK  3(1Q43) WILD-TYPE    184     15    209
D22V10, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        10                         184
  CLUS_2                         1                          15
  CLUS_3                        16                         209
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  3(1Q43) MUTATED        8      6      1      6      1      3      2
  DEL PEAK  3(1Q43) WILD-TYPE     79     71     54    118     38     19     29
D22V11, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        0     10     17
  DEL PEAK  3(1Q43) WILD-TYPE      5    186    217
D22V12, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         0                           5
  CLUS_2                        10                         186
  CLUS_3                        17                         217

Clustering(23) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        2      1      3
  DEL PEAK  4(2Q37.3) WILD-TYPE      7      9      5
D23V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                           1                             9
  CLUS_3                           3                             5
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        0      2      2      2
  DEL PEAK  4(2Q37.3) WILD-TYPE      7      4      8      2
D23V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                             7
  CLUS_2                           2                             4
  CLUS_3                           2                             8
  CLUS_4                           2                             2
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       42     16     11
  DEL PEAK  4(2Q37.3) WILD-TYPE     97     94    203
D23V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          42                            97
  CLUS_2                          16                            94
  CLUS_3                          11                           203
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       57      4      3      5
  DEL PEAK  4(2Q37.3) WILD-TYPE    142     61     50    136
D23V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          57                           142
  CLUS_2                           4                            61
  CLUS_3                           3                            50
  CLUS_4                           5                           136
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        8     17     10      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     44     45     58     70
D23V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           8                            44
  CLUS_2                          17                            45
  CLUS_3                          10                            58
  CLUS_4                           4                            70
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        0     28     11
  DEL PEAK  4(2Q37.3) WILD-TYPE      8    101    108
D23V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                             8
  CLUS_2                          28                           101
  CLUS_3                          11                           108
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       29     12      4     13      7      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     87     77     90    113      4     21
D23V7, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       53      5     11
  DEL PEAK  4(2Q37.3) WILD-TYPE    171     75    146
D23V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          53                           171
  CLUS_2                           5                            75
  CLUS_3                          11                           146
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       15     16      5      5     15      9
  DEL PEAK  4(2Q37.3) WILD-TYPE     47     60     25     36    121     54
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED        1
  DEL PEAK  4(2Q37.3) WILD-TYPE     26
D23V9, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       22      5     39
  DEL PEAK  4(2Q37.3) WILD-TYPE    172     11    186
D23V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          22                           172
  CLUS_2                           5                            11
  CLUS_3                          39                           186
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       23      9      6     12      7      5
  DEL PEAK  4(2Q37.3) WILD-TYPE     64     68     49    112     32     17
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED        4
  DEL PEAK  4(2Q37.3) WILD-TYPE     27
D23V11, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        3     20     43
  DEL PEAK  4(2Q37.3) WILD-TYPE      2    176    191
D23V12, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                          20                           176
  CLUS_3                          43                           191

Clustering(24) Variable = DEL PEAK  5(3P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.1) MUTATED        1      2      1
  DEL PEAK  5(3P21.1) WILD-TYPE      8      8      7
D24V1, multiclass
        clus
vv       DEL PEAK  5(3P21.1) MUTATED DEL PEAK  5(3P21.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           2                             8
  CLUS_3                           1                             7
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.1) MUTATED        0      0      1      3
  DEL PEAK  5(3P21.1) WILD-TYPE      7      6      9      1
D24V2, multiclass
        clus
vv       DEL PEAK  5(3P21.1) MUTATED DEL PEAK  5(3P21.1) WILD-TYPE
  CLUS_1                           0                             7
  CLUS_2                           0                             6
  CLUS_3                           1                             9
  CLUS_4                           3                             1
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.1) MUTATED       27     11      7
  DEL PEAK  5(3P21.1) WILD-TYPE    112     99    207
D24V3, multiclass
        clus
vv       DEL PEAK  5(3P21.1) MUTATED DEL PEAK  5(3P21.1) WILD-TYPE
  CLUS_1                          27                           112
  CLUS_2                          11                            99
  CLUS_3                           7                           207
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.1) MUTATED       31      6      2      5
  DEL PEAK  5(3P21.1) WILD-TYPE    168     59     51    136
D24V4, multiclass
        clus
vv       DEL PEAK  5(3P21.1) MUTATED DEL PEAK  5(3P21.1) WILD-TYPE
  CLUS_1                          31                           168
  CLUS_2                           6                            59
  CLUS_3                           2                            51
  CLUS_4                           5                           136
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.1) MUTATED        4     16      3      4
  DEL PEAK  5(3P21.1) WILD-TYPE     48     46     65     70
D24V5, multiclass
        clus
vv       DEL PEAK  5(3P21.1) MUTATED DEL PEAK  5(3P21.1) WILD-TYPE
  CLUS_1                           4                            48
  CLUS_2                          16                            46
  CLUS_3                           3                            65
  CLUS_4                           4                            70
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.1) MUTATED        2     16      9
  DEL PEAK  5(3P21.1) WILD-TYPE      6    113    110
D24V6, multiclass
        clus
vv       DEL PEAK  5(3P21.1) MUTATED DEL PEAK  5(3P21.1) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                          16                           113
  CLUS_3                           9                           110
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P21.1) MUTATED       13     11      3      9      8      1
  DEL PEAK  5(3P21.1) WILD-TYPE    103     78     91    117      3     24
D24V7, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.1) MUTATED       35      2      8
  DEL PEAK  5(3P21.1) WILD-TYPE    189     78    149
D24V8, multiclass
        clus
vv       DEL PEAK  5(3P21.1) MUTATED DEL PEAK  5(3P21.1) WILD-TYPE
  CLUS_1                          35                           189
  CLUS_2                           2                            78
  CLUS_3                           8                           149
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P21.1) MUTATED       10     15      5      4      8      3
  DEL PEAK  5(3P21.1) WILD-TYPE     52     61     25     37    128     60
                               vv
clus                            CLUS_7
  DEL PEAK  5(3P21.1) MUTATED        0
  DEL PEAK  5(3P21.1) WILD-TYPE     27
D24V9, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.1) MUTATED       13      3     29
  DEL PEAK  5(3P21.1) WILD-TYPE    181     13    196
D24V10, multiclass
        clus
vv       DEL PEAK  5(3P21.1) MUTATED DEL PEAK  5(3P21.1) WILD-TYPE
  CLUS_1                          13                           181
  CLUS_2                           3                            13
  CLUS_3                          29                           196
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P21.1) MUTATED       12     14      6      6      3      3
  DEL PEAK  5(3P21.1) WILD-TYPE     75     63     49    118     36     19
                               vv
clus                            CLUS_7
  DEL PEAK  5(3P21.1) MUTATED        1
  DEL PEAK  5(3P21.1) WILD-TYPE     30
D24V11, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.1) MUTATED        3     11     31
  DEL PEAK  5(3P21.1) WILD-TYPE      2    185    203
D24V12, multiclass
        clus
vv       DEL PEAK  5(3P21.1) MUTATED DEL PEAK  5(3P21.1) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                          11                           185
  CLUS_3                          31                           203

Clustering(25) Variable = DEL PEAK  6(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q29) MUTATED        1      0      2
  DEL PEAK  6(3Q29) WILD-TYPE      8     10      6
D25V1, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         0                          10
  CLUS_3                         2                           6
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q29) MUTATED        0      1      1      1
  DEL PEAK  6(3Q29) WILD-TYPE      7      5      9      3
D25V2, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                         0                           7
  CLUS_2                         1                           5
  CLUS_3                         1                           9
  CLUS_4                         1                           3
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q29) MUTATED       29      8      4
  DEL PEAK  6(3Q29) WILD-TYPE    110    102    210
D25V3, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                        29                         110
  CLUS_2                         8                         102
  CLUS_3                         4                         210
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q29) MUTATED       28      5      4      4
  DEL PEAK  6(3Q29) WILD-TYPE    171     60     49    137
D25V4, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                        28                         171
  CLUS_2                         5                          60
  CLUS_3                         4                          49
  CLUS_4                         4                         137
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q29) MUTATED        5      9      4      6
  DEL PEAK  6(3Q29) WILD-TYPE     47     53     64     68
D25V5, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                         5                          47
  CLUS_2                         9                          53
  CLUS_3                         4                          64
  CLUS_4                         6                          68
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q29) MUTATED        0     14     10
  DEL PEAK  6(3Q29) WILD-TYPE      8    115    109
D25V6, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                         0                           8
  CLUS_2                        14                         115
  CLUS_3                        10                         109
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3Q29) MUTATED       13      8      2      9      7      2
  DEL PEAK  6(3Q29) WILD-TYPE    103     81     92    117      4     23
D25V7, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q29) MUTATED       30      2      9
  DEL PEAK  6(3Q29) WILD-TYPE    194     78    148
D25V8, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                        30                         194
  CLUS_2                         2                          78
  CLUS_3                         9                         148
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  6(3Q29) MUTATED        6      8      7      3     11      5      1
  DEL PEAK  6(3Q29) WILD-TYPE     56     68     23     38    125     58     26
D25V9, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q29) MUTATED       12      3     26
  DEL PEAK  6(3Q29) WILD-TYPE    182     13    199
D25V10, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                        12                         182
  CLUS_2                         3                          13
  CLUS_3                        26                         199
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  6(3Q29) MUTATED        9      8      5      9      4      5      1
  DEL PEAK  6(3Q29) WILD-TYPE     78     69     50    115     35     17     30
D25V11, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q29) MUTATED        2     12     27
  DEL PEAK  6(3Q29) WILD-TYPE      3    184    207
D25V12, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                         2                           3
  CLUS_2                        12                         184
  CLUS_3                        27                         207

Clustering(26) Variable = DEL PEAK  7(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED        4      4      3
  DEL PEAK  7(4Q34.3) WILD-TYPE      5      6      5
D26V1, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                           4                             6
  CLUS_3                           3                             5
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED        2      2      4      3
  DEL PEAK  7(4Q34.3) WILD-TYPE      5      4      6      1
D26V2, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           2                             5
  CLUS_2                           2                             4
  CLUS_3                           4                             6
  CLUS_4                           3                             1
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED       55     17     55
  DEL PEAK  7(4Q34.3) WILD-TYPE     84     93    159
D26V3, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          55                            84
  CLUS_2                          17                            93
  CLUS_3                          55                           159
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED       69      5      4     49
  DEL PEAK  7(4Q34.3) WILD-TYPE    130     60     49     92
D26V4, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          69                           130
  CLUS_2                           5                            60
  CLUS_3                           4                            49
  CLUS_4                          49                            92
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED        9     21     23     21
  DEL PEAK  7(4Q34.3) WILD-TYPE     43     41     45     53
D26V5, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           9                            43
  CLUS_2                          21                            41
  CLUS_3                          23                            45
  CLUS_4                          21                            53
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED        5     40     29
  DEL PEAK  7(4Q34.3) WILD-TYPE      3     89     90
D26V6, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           5                             3
  CLUS_2                          40                            89
  CLUS_3                          29                            90
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q34.3) MUTATED       34     11     34     35      8      4
  DEL PEAK  7(4Q34.3) WILD-TYPE     82     78     60     91      3     21
D26V7, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED       53     29     44
  DEL PEAK  7(4Q34.3) WILD-TYPE    171     51    113
D26V8, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          53                           171
  CLUS_2                          29                            51
  CLUS_3                          44                           113
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q34.3) MUTATED       17     13     13     17     37     18
  DEL PEAK  7(4Q34.3) WILD-TYPE     45     63     17     24     99     45
                               vv
clus                            CLUS_7
  DEL PEAK  7(4Q34.3) MUTATED        4
  DEL PEAK  7(4Q34.3) WILD-TYPE     23
D26V9, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED       60      2     57
  DEL PEAK  7(4Q34.3) WILD-TYPE    134     14    168
D26V10, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          60                           134
  CLUS_2                           2                            14
  CLUS_3                          57                           168
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q34.3) MUTATED       23     13     20     34     13     10
  DEL PEAK  7(4Q34.3) WILD-TYPE     64     64     35     90     26     12
                               vv
clus                            CLUS_7
  DEL PEAK  7(4Q34.3) MUTATED        6
  DEL PEAK  7(4Q34.3) WILD-TYPE     25
D26V11, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED        2     53     64
  DEL PEAK  7(4Q34.3) WILD-TYPE      3    143    170
D26V12, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                          53                           143
  CLUS_3                          64                           170

Clustering(27) Variable = DEL PEAK  8(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.33) MUTATED        2      3      2
  DEL PEAK  8(5P15.33) WILD-TYPE      7      7      6
D27V1, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            3                              7
  CLUS_3                            2                              6
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.33) MUTATED        0      2      2      3
  DEL PEAK  8(5P15.33) WILD-TYPE      7      4      8      1
D27V2, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            2                              4
  CLUS_3                            2                              8
  CLUS_4                            3                              1
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.33) MUTATED       32      9      6
  DEL PEAK  8(5P15.33) WILD-TYPE    107    101    208
D27V3, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           32                            107
  CLUS_2                            9                            101
  CLUS_3                            6                            208
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.33) MUTATED       34      7      3      3
  DEL PEAK  8(5P15.33) WILD-TYPE    165     58     50    138
D27V4, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           34                            165
  CLUS_2                            7                             58
  CLUS_3                            3                             50
  CLUS_4                            3                            138
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.33) MUTATED        6      5      8      9
  DEL PEAK  8(5P15.33) WILD-TYPE     46     57     60     65
D27V5, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                            6                             46
  CLUS_2                            5                             57
  CLUS_3                            8                             60
  CLUS_4                            9                             65
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.33) MUTATED        0     13     15
  DEL PEAK  8(5P15.33) WILD-TYPE      8    116    104
D27V6, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                           13                            116
  CLUS_3                           15                            104
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5P15.33) MUTATED       16     12      2     10      3      3
  DEL PEAK  8(5P15.33) WILD-TYPE    100     77     92    116      8     22
D27V7, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.33) MUTATED       31      1     14
  DEL PEAK  8(5P15.33) WILD-TYPE    193     79    143
D27V8, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           31                            193
  CLUS_2                            1                             79
  CLUS_3                           14                            143
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5P15.33) MUTATED        4      9     10      1     13      6
  DEL PEAK  8(5P15.33) WILD-TYPE     58     67     20     40    123     57
                                vv
clus                             CLUS_7
  DEL PEAK  8(5P15.33) MUTATED        2
  DEL PEAK  8(5P15.33) WILD-TYPE     25
D27V9, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.33) MUTATED       18      2     25
  DEL PEAK  8(5P15.33) WILD-TYPE    176     14    200
D27V10, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           18                            176
  CLUS_2                            2                             14
  CLUS_3                           25                            200
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5P15.33) MUTATED        8      7      2     13      5      8
  DEL PEAK  8(5P15.33) WILD-TYPE     79     70     53    111     34     14
                                vv
clus                             CLUS_7
  DEL PEAK  8(5P15.33) MUTATED        2
  DEL PEAK  8(5P15.33) WILD-TYPE     29
D27V11, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.33) MUTATED        1     17     27
  DEL PEAK  8(5P15.33) WILD-TYPE      4    179    207
D27V12, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                           17                            179
  CLUS_3                           27                            207

Clustering(28) Variable = DEL PEAK  9(5Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q34) MUTATED        1      2      3
  DEL PEAK  9(5Q34) WILD-TYPE      8      8      5
D28V1, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         2                           8
  CLUS_3                         3                           5
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q34) MUTATED        0      2      1      3
  DEL PEAK  9(5Q34) WILD-TYPE      7      4      9      1
D28V2, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                         0                           7
  CLUS_2                         2                           4
  CLUS_3                         1                           9
  CLUS_4                         3                           1
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q34) MUTATED       41      4     11
  DEL PEAK  9(5Q34) WILD-TYPE     98    106    203
D28V3, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                        41                          98
  CLUS_2                         4                         106
  CLUS_3                        11                         203
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q34) MUTATED       44      5      4      3
  DEL PEAK  9(5Q34) WILD-TYPE    155     60     49    138
D28V4, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                        44                         155
  CLUS_2                         5                          60
  CLUS_3                         4                          49
  CLUS_4                         3                         138
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q34) MUTATED        7     13      6      7
  DEL PEAK  9(5Q34) WILD-TYPE     45     49     62     67
D28V5, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                         7                          45
  CLUS_2                        13                          49
  CLUS_3                         6                          62
  CLUS_4                         7                          67
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q34) MUTATED        1     17     15
  DEL PEAK  9(5Q34) WILD-TYPE      7    112    104
D28V6, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                         1                           7
  CLUS_2                        17                         112
  CLUS_3                        15                         104
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5Q34) MUTATED       17     14      3     10      7      4
  DEL PEAK  9(5Q34) WILD-TYPE     99     75     91    116      4     21
D28V7, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q34) MUTATED       39      2     14
  DEL PEAK  9(5Q34) WILD-TYPE    185     78    143
D28V8, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                        39                         185
  CLUS_2                         2                          78
  CLUS_3                        14                         143
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  9(5Q34) MUTATED        8      7     14      2     15      5      3
  DEL PEAK  9(5Q34) WILD-TYPE     54     69     16     39    121     58     24
D28V9, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q34) MUTATED       19      2     33
  DEL PEAK  9(5Q34) WILD-TYPE    175     14    192
D28V10, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                        19                         175
  CLUS_2                         2                          14
  CLUS_3                        33                         192
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  9(5Q34) MUTATED        9      9      4     10      6     11      5
  DEL PEAK  9(5Q34) WILD-TYPE     78     68     51    114     33     11     26
D28V11, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q34) MUTATED        3     18     33
  DEL PEAK  9(5Q34) WILD-TYPE      2    178    201
D28V12, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                         3                           2
  CLUS_2                        18                         178
  CLUS_3                        33                         201

Clustering(29) Variable = DEL PEAK 10(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.3) MUTATED        0      0      1
  DEL PEAK 10(6P25.3) WILD-TYPE      9     10      7
D29V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 10(6P25.3) MUTATED"
clus
  DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE 
                            1                            26 
                   TCGA-CS-4942                    TCGA-CS-4943 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5395 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-CS-5396                    TCGA-DB-5270 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DB-5273                    TCGA-DB-5274 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DB-5275                    TCGA-DB-5276 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DB-5278                    TCGA-DB-5280 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DB-5281                    TCGA-DH-5140 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DH-5141                    TCGA-DH-5142 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DH-5143                    TCGA-DH-5144 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-E1-5302                    TCGA-E1-5303 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-E1-5304                    TCGA-E1-5311 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-E1-5318                    TCGA-E1-5322 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P25.3) MUTATED        0      0      0      1
  DEL PEAK 10(6P25.3) WILD-TYPE      7      6     10      3
D29V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 10(6P25.3) MUTATED"
clus
  DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE 
                            1                            26 
                   TCGA-CS-4942                    TCGA-CS-4943 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5395 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-CS-5396                    TCGA-DB-5270 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DB-5273                    TCGA-DB-5274 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DB-5275                    TCGA-DB-5276 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DB-5278                    TCGA-DB-5280 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DB-5281                    TCGA-DH-5140 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DH-5141                    TCGA-DH-5142 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DH-5143                    TCGA-DH-5144 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-E1-5302                    TCGA-E1-5303 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-E1-5304                    TCGA-E1-5311 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-E1-5318                    TCGA-E1-5322 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.3) MUTATED       23     16      9
  DEL PEAK 10(6P25.3) WILD-TYPE    116     94    205
D29V3, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          23                           116
  CLUS_2                          16                            94
  CLUS_3                           9                           205
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P25.3) MUTATED       26      7      6      8
  DEL PEAK 10(6P25.3) WILD-TYPE    173     58     47    133
D29V4, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          26                           173
  CLUS_2                           7                            58
  CLUS_3                           6                            47
  CLUS_4                           8                           133
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P25.3) MUTATED        6      9      3      8
  DEL PEAK 10(6P25.3) WILD-TYPE     46     53     65     66
D29V5, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                           6                            46
  CLUS_2                           9                            53
  CLUS_3                           3                            65
  CLUS_4                           8                            66
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.3) MUTATED        0     15     11
  DEL PEAK 10(6P25.3) WILD-TYPE      8    114    108
D29V6, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                           0                             8
  CLUS_2                          15                           114
  CLUS_3                          11                           108
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6P25.3) MUTATED       12     12      8      7      4      3
  DEL PEAK 10(6P25.3) WILD-TYPE    104     77     86    119      7     22
D29V7, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.3) MUTATED       30      6     10
  DEL PEAK 10(6P25.3) WILD-TYPE    194     74    147
D29V8, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          30                           194
  CLUS_2                           6                            74
  CLUS_3                          10                           147
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6P25.3) MUTATED        6      9      7      4     10      7
  DEL PEAK 10(6P25.3) WILD-TYPE     56     67     23     37    126     56
                               vv
clus                            CLUS_7
  DEL PEAK 10(6P25.3) MUTATED        3
  DEL PEAK 10(6P25.3) WILD-TYPE     24
D29V9, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.3) MUTATED       17      0     29
  DEL PEAK 10(6P25.3) WILD-TYPE    177     16    196
D29V10, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          17                           177
  CLUS_2                           0                            16
  CLUS_3                          29                           196
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6P25.3) MUTATED        7     11      5      8      7      4
  DEL PEAK 10(6P25.3) WILD-TYPE     80     66     50    116     32     18
                               vv
clus                            CLUS_7
  DEL PEAK 10(6P25.3) MUTATED        4
  DEL PEAK 10(6P25.3) WILD-TYPE     27
D29V11, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.3) MUTATED        0     18     28
  DEL PEAK 10(6P25.3) WILD-TYPE      5    178    206
D29V12, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                          18                           178
  CLUS_3                          28                           206

Clustering(30) Variable = DEL PEAK 11(6Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q24.3) MUTATED        3      1      0
  DEL PEAK 11(6Q24.3) WILD-TYPE      6      9      8
D30V1, multiclass
        clus
vv       DEL PEAK 11(6Q24.3) MUTATED DEL PEAK 11(6Q24.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           1                             9
  CLUS_3                           0                             8
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q24.3) MUTATED        0      0      3      1
  DEL PEAK 11(6Q24.3) WILD-TYPE      7      6      7      3
D30V2, multiclass
        clus
vv       DEL PEAK 11(6Q24.3) MUTATED DEL PEAK 11(6Q24.3) WILD-TYPE
  CLUS_1                           0                             7
  CLUS_2                           0                             6
  CLUS_3                           3                             7
  CLUS_4                           1                             3
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q24.3) MUTATED       30     25     19
  DEL PEAK 11(6Q24.3) WILD-TYPE    109     85    195
D30V3, multiclass
        clus
vv       DEL PEAK 11(6Q24.3) MUTATED DEL PEAK 11(6Q24.3) WILD-TYPE
  CLUS_1                          30                           109
  CLUS_2                          25                            85
  CLUS_3                          19                           195
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q24.3) MUTATED       46     12      9      7
  DEL PEAK 11(6Q24.3) WILD-TYPE    153     53     44    134
D30V4, multiclass
        clus
vv       DEL PEAK 11(6Q24.3) MUTATED DEL PEAK 11(6Q24.3) WILD-TYPE
  CLUS_1                          46                           153
  CLUS_2                          12                            53
  CLUS_3                           9                            44
  CLUS_4                           7                           134
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q24.3) MUTATED        7     17      8     11
  DEL PEAK 11(6Q24.3) WILD-TYPE     45     45     60     63
D30V5, multiclass
        clus
vv       DEL PEAK 11(6Q24.3) MUTATED DEL PEAK 11(6Q24.3) WILD-TYPE
  CLUS_1                           7                            45
  CLUS_2                          17                            45
  CLUS_3                           8                            60
  CLUS_4                          11                            63
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q24.3) MUTATED        1     26     16
  DEL PEAK 11(6Q24.3) WILD-TYPE      7    103    103
D30V6, multiclass
        clus
vv       DEL PEAK 11(6Q24.3) MUTATED DEL PEAK 11(6Q24.3) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                          26                           103
  CLUS_3                          16                           103
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q24.3) MUTATED       25     19      7     16      4      2
  DEL PEAK 11(6Q24.3) WILD-TYPE     91     70     87    110      7     23
D30V7, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q24.3) MUTATED       49      5     19
  DEL PEAK 11(6Q24.3) WILD-TYPE    175     75    138
D30V8, multiclass
        clus
vv       DEL PEAK 11(6Q24.3) MUTATED DEL PEAK 11(6Q24.3) WILD-TYPE
  CLUS_1                          49                           175
  CLUS_2                           5                            75
  CLUS_3                          19                           138
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q24.3) MUTATED       12     20      9      2     16      8
  DEL PEAK 11(6Q24.3) WILD-TYPE     50     56     21     39    120     55
                               vv
clus                            CLUS_7
  DEL PEAK 11(6Q24.3) MUTATED        2
  DEL PEAK 11(6Q24.3) WILD-TYPE     25
D30V9, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q24.3) MUTATED       22      2     45
  DEL PEAK 11(6Q24.3) WILD-TYPE    172     14    180
D30V10, multiclass
        clus
vv       DEL PEAK 11(6Q24.3) MUTATED DEL PEAK 11(6Q24.3) WILD-TYPE
  CLUS_1                          22                           172
  CLUS_2                           2                            14
  CLUS_3                          45                           180
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q24.3) MUTATED       19     17      3     14      6      8
  DEL PEAK 11(6Q24.3) WILD-TYPE     68     60     52    110     33     14
                               vv
clus                            CLUS_7
  DEL PEAK 11(6Q24.3) MUTATED        2
  DEL PEAK 11(6Q24.3) WILD-TYPE     29
D30V11, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q24.3) MUTATED        0     22     47
  DEL PEAK 11(6Q24.3) WILD-TYPE      5    174    187
D30V12, multiclass
        clus
vv       DEL PEAK 11(6Q24.3) MUTATED DEL PEAK 11(6Q24.3) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                          22                           174
  CLUS_3                          47                           187

Clustering(31) Variable = DEL PEAK 12(7P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7P22.3) MUTATED        0      0      0
  DEL PEAK 12(7P22.3) WILD-TYPE      9     10      8
D31V1, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(7P22.3) MUTATED        0      0      0      0
  DEL PEAK 12(7P22.3) WILD-TYPE      7      6     10      4
D31V2, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7P22.3) MUTATED       12      3      5
  DEL PEAK 12(7P22.3) WILD-TYPE    127    107    209
D31V3, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          12                           127
  CLUS_2                           3                           107
  CLUS_3                           5                           209
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(7P22.3) MUTATED       14      1      2      2
  DEL PEAK 12(7P22.3) WILD-TYPE    185     64     51    139
D31V4, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          14                           185
  CLUS_2                           1                            64
  CLUS_3                           2                            51
  CLUS_4                           2                           139
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(7P22.3) MUTATED        3      1      4      1
  DEL PEAK 12(7P22.3) WILD-TYPE     49     61     64     73
D31V5, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                           3                            49
  CLUS_2                           1                            61
  CLUS_3                           4                            64
  CLUS_4                           1                            73
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7P22.3) MUTATED        0      7      2
  DEL PEAK 12(7P22.3) WILD-TYPE      8    122    117
D31V6, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                           0                             8
  CLUS_2                           7                           122
  CLUS_3                           2                           117
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7P22.3) MUTATED        7      3      2      6      2      0
  DEL PEAK 12(7P22.3) WILD-TYPE    109     86     92    120      9     25
D31V7, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7P22.3) MUTATED       12      2      6
  DEL PEAK 12(7P22.3) WILD-TYPE    212     78    151
D31V8, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          12                           212
  CLUS_2                           2                            78
  CLUS_3                           6                           151
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7P22.3) MUTATED        4      3      2      1      6      2
  DEL PEAK 12(7P22.3) WILD-TYPE     58     73     28     40    130     61
                               vv
clus                            CLUS_7
  DEL PEAK 12(7P22.3) MUTATED        0
  DEL PEAK 12(7P22.3) WILD-TYPE     27
D31V9, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7P22.3) MUTATED        7      0     11
  DEL PEAK 12(7P22.3) WILD-TYPE    187     16    214
D31V10, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                           7                           187
  CLUS_2                           0                            16
  CLUS_3                          11                           214
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7P22.3) MUTATED        5      2      2      5      2      2
  DEL PEAK 12(7P22.3) WILD-TYPE     82     75     53    119     37     20
                               vv
clus                            CLUS_7
  DEL PEAK 12(7P22.3) MUTATED        0
  DEL PEAK 12(7P22.3) WILD-TYPE     31
D31V11, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7P22.3) MUTATED        1      8      9
  DEL PEAK 12(7P22.3) WILD-TYPE      4    188    225
D31V12, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           8                           188
  CLUS_3                           9                           225

Clustering(32) Variable = DEL PEAK 13(8Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8Q24.3) MUTATED        0      1      1
  DEL PEAK 13(8Q24.3) WILD-TYPE      9      9      7
D32V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 13(8Q24.3) MUTATED"
clus
  DEL PEAK 13(8Q24.3) MUTATED DEL PEAK 13(8Q24.3) WILD-TYPE 
                            2                            25 
                   TCGA-CS-4942                    TCGA-CS-4943 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5395 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-CS-5396                    TCGA-DB-5270 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5273                    TCGA-DB-5274 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5275                    TCGA-DB-5276 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5277                    TCGA-DB-5278 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5280                    TCGA-DH-5141 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-DH-5142                    TCGA-DH-5143 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-DH-5144                    TCGA-E1-5302 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5303                    TCGA-E1-5304 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5311                    TCGA-E1-5318 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5322 
"DEL PEAK 13(8Q24.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8Q24.3) MUTATED        0      1      0      1
  DEL PEAK 13(8Q24.3) WILD-TYPE      7      5     10      3
D32V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 13(8Q24.3) MUTATED"
clus
  DEL PEAK 13(8Q24.3) MUTATED DEL PEAK 13(8Q24.3) WILD-TYPE 
                            2                            25 
                   TCGA-CS-4942                    TCGA-CS-4943 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5395 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-CS-5396                    TCGA-DB-5270 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5273                    TCGA-DB-5274 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5275                    TCGA-DB-5276 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5277                    TCGA-DB-5278 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5280                    TCGA-DH-5141 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-DH-5142                    TCGA-DH-5143 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-DH-5144                    TCGA-E1-5302 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5303                    TCGA-E1-5304 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5311                    TCGA-E1-5318 
"DEL PEAK 13(8Q24.3) WILD-TYPE" "DEL PEAK 13(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5322 
"DEL PEAK 13(8Q24.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8Q24.3) MUTATED       12     13      1
  DEL PEAK 13(8Q24.3) WILD-TYPE    127     97    213
D32V3, multiclass
        clus
vv       DEL PEAK 13(8Q24.3) MUTATED DEL PEAK 13(8Q24.3) WILD-TYPE
  CLUS_1                          12                           127
  CLUS_2                          13                            97
  CLUS_3                           1                           213
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8Q24.3) MUTATED       14     11      1      0
  DEL PEAK 13(8Q24.3) WILD-TYPE    185     54     52    141
D32V4, multiclass
        clus
vv       DEL PEAK 13(8Q24.3) MUTATED DEL PEAK 13(8Q24.3) WILD-TYPE
  CLUS_1                          14                           185
  CLUS_2                          11                            54
  CLUS_3                           1                            52
  CLUS_4                           0                           141
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8Q24.3) MUTATED        3      5      4      4
  DEL PEAK 13(8Q24.3) WILD-TYPE     49     57     64     70
D32V5, multiclass
        clus
vv       DEL PEAK 13(8Q24.3) MUTATED DEL PEAK 13(8Q24.3) WILD-TYPE
  CLUS_1                           3                            49
  CLUS_2                           5                            57
  CLUS_3                           4                            64
  CLUS_4                           4                            70
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8Q24.3) MUTATED        0     10      6
  DEL PEAK 13(8Q24.3) WILD-TYPE      8    119    113
D32V6, multiclass
        clus
vv       DEL PEAK 13(8Q24.3) MUTATED DEL PEAK 13(8Q24.3) WILD-TYPE
  CLUS_1                           0                             8
  CLUS_2                          10                           119
  CLUS_3                           6                           113
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(8Q24.3) MUTATED       10     10      0      4      1      1
  DEL PEAK 13(8Q24.3) WILD-TYPE    106     79     94    122     10     24
D32V7, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8Q24.3) MUTATED       21      0      5
  DEL PEAK 13(8Q24.3) WILD-TYPE    203     80    152
D32V8, multiclass
        clus
vv       DEL PEAK 13(8Q24.3) MUTATED DEL PEAK 13(8Q24.3) WILD-TYPE
  CLUS_1                          21                           203
  CLUS_2                           0                            80
  CLUS_3                           5                           152
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(8Q24.3) MUTATED        1     12      2      0      5      5
  DEL PEAK 13(8Q24.3) WILD-TYPE     61     64     28     41    131     58
                               vv
clus                            CLUS_7
  DEL PEAK 13(8Q24.3) MUTATED        1
  DEL PEAK 13(8Q24.3) WILD-TYPE     26
D32V9, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8Q24.3) MUTATED        6      2     18
  DEL PEAK 13(8Q24.3) WILD-TYPE    188     14    207
D32V10, multiclass
        clus
vv       DEL PEAK 13(8Q24.3) MUTATED DEL PEAK 13(8Q24.3) WILD-TYPE
  CLUS_1                           6                           188
  CLUS_2                           2                            14
  CLUS_3                          18                           207
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(8Q24.3) MUTATED        4     10      2      4      4      1
  DEL PEAK 13(8Q24.3) WILD-TYPE     83     67     53    120     35     21
                               vv
clus                            CLUS_7
  DEL PEAK 13(8Q24.3) MUTATED        1
  DEL PEAK 13(8Q24.3) WILD-TYPE     30
D32V11, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8Q24.3) MUTATED        0      6     20
  DEL PEAK 13(8Q24.3) WILD-TYPE      5    190    214
D32V12, multiclass
        clus
vv       DEL PEAK 13(8Q24.3) MUTATED DEL PEAK 13(8Q24.3) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                           6                           190
  CLUS_3                          20                           214

Clustering(33) Variable = DEL PEAK 14(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED        1      2      3
  DEL PEAK 14(9P23) WILD-TYPE      8      8      5
D33V1, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         2                           8
  CLUS_3                         3                           5
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P23) MUTATED        1      1      2      2
  DEL PEAK 14(9P23) WILD-TYPE      6      5      8      2
D33V2, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                         1                           6
  CLUS_2                         1                           5
  CLUS_3                         2                           8
  CLUS_4                         2                           2
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED       51     49     34
  DEL PEAK 14(9P23) WILD-TYPE     88     61    180
D33V3, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        51                          88
  CLUS_2                        49                          61
  CLUS_3                        34                         180
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P23) MUTATED       70     29      9     24
  DEL PEAK 14(9P23) WILD-TYPE    129     36     44    117
D33V4, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        70                         129
  CLUS_2                        29                          36
  CLUS_3                         9                          44
  CLUS_4                        24                         117
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P23) MUTATED       11     27     22     18
  DEL PEAK 14(9P23) WILD-TYPE     41     35     46     56
D33V5, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        11                          41
  CLUS_2                        27                          35
  CLUS_3                        22                          46
  CLUS_4                        18                          56
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED        2     49     27
  DEL PEAK 14(9P23) WILD-TYPE      6     80     92
D33V6, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                         2                           6
  CLUS_2                        49                          80
  CLUS_3                        27                          92
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(9P23) MUTATED       30     32     17     42      8      5
  DEL PEAK 14(9P23) WILD-TYPE     86     57     77     84      3     20
D33V7, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED       75     17     42
  DEL PEAK 14(9P23) WILD-TYPE    149     63    115
D33V8, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        75                         149
  CLUS_2                        17                          63
  CLUS_3                        42                         115
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 14(9P23) MUTATED       15     30      7      7     40     24      4
  DEL PEAK 14(9P23) WILD-TYPE     47     46     23     34     96     39     23
D33V9, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED       58      3     66
  DEL PEAK 14(9P23) WILD-TYPE    136     13    159
D33V10, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        58                         136
  CLUS_2                         3                          13
  CLUS_3                        66                         159
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 14(9P23) MUTATED       23     30     11     36     13      8      6
  DEL PEAK 14(9P23) WILD-TYPE     64     47     44     88     26     14     25
D33V11, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED        3     58     66
  DEL PEAK 14(9P23) WILD-TYPE      2    138    168
D33V12, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                         3                           2
  CLUS_2                        58                         138
  CLUS_3                        66                         168

Clustering(34) Variable = DEL PEAK 15(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED        1      4      3
  DEL PEAK 15(9P21.3) WILD-TYPE      8      6      5
D34V1, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           4                             6
  CLUS_3                           3                             5
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED        1      1      2      4
  DEL PEAK 15(9P21.3) WILD-TYPE      6      5      8      0
D34V2, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           1                             6
  CLUS_2                           1                             5
  CLUS_3                           2                             8
  CLUS_4                           4                             0
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED       55     70     33
  DEL PEAK 15(9P21.3) WILD-TYPE     84     40    181
D34V3, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          55                            84
  CLUS_2                          70                            40
  CLUS_3                          33                           181
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED       71     50     11     24
  DEL PEAK 15(9P21.3) WILD-TYPE    128     15     42    117
D34V4, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          71                           128
  CLUS_2                          50                            15
  CLUS_3                          11                            42
  CLUS_4                          24                           117
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED       12     38     26     18
  DEL PEAK 15(9P21.3) WILD-TYPE     40     24     42     56
D34V5, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          12                            40
  CLUS_2                          38                            24
  CLUS_3                          26                            42
  CLUS_4                          18                            56
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED        2     64     28
  DEL PEAK 15(9P21.3) WILD-TYPE      6     65     91
D34V6, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                          64                            65
  CLUS_3                          28                            91
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P21.3) MUTATED       33     52     16     43      9      5
  DEL PEAK 15(9P21.3) WILD-TYPE     83     37     78     83      2     20
D34V7, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED       99     16     43
  DEL PEAK 15(9P21.3) WILD-TYPE    125     64    114
D34V8, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          99                           125
  CLUS_2                          16                            64
  CLUS_3                          43                           114
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P21.3) MUTATED       15     44     13      8     38     25
  DEL PEAK 15(9P21.3) WILD-TYPE     47     32     17     33     98     38
                               vv
clus                            CLUS_7
  DEL PEAK 15(9P21.3) MUTATED        5
  DEL PEAK 15(9P21.3) WILD-TYPE     22
D34V9, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED       57      3     88
  DEL PEAK 15(9P21.3) WILD-TYPE    137     13    137
D34V10, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          57                           137
  CLUS_2                           3                            13
  CLUS_3                          88                           137
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P21.3) MUTATED       24     48     12     37     13      8
  DEL PEAK 15(9P21.3) WILD-TYPE     63     29     43     87     26     14
                               vv
clus                            CLUS_7
  DEL PEAK 15(9P21.3) MUTATED        6
  DEL PEAK 15(9P21.3) WILD-TYPE     25
D34V11, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED        2     58     88
  DEL PEAK 15(9P21.3) WILD-TYPE      3    138    146
D34V12, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                          58                           138
  CLUS_3                          88                           146

Clustering(35) Variable = DEL PEAK 16(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q26.3) MUTATED        0      1      3
  DEL PEAK 16(10Q26.3) WILD-TYPE      9      9      5
D35V1, multiclass
        clus
vv       DEL PEAK 16(10Q26.3) MUTATED DEL PEAK 16(10Q26.3) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            1                              9
  CLUS_3                            3                              5
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q26.3) MUTATED        0      1      1      2
  DEL PEAK 16(10Q26.3) WILD-TYPE      7      5      9      2
D35V2, multiclass
        clus
vv       DEL PEAK 16(10Q26.3) MUTATED DEL PEAK 16(10Q26.3) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            1                              5
  CLUS_3                            1                              9
  CLUS_4                            2                              2
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q26.3) MUTATED       46     80     13
  DEL PEAK 16(10Q26.3) WILD-TYPE     93     30    201
D35V3, multiclass
        clus
vv       DEL PEAK 16(10Q26.3) MUTATED DEL PEAK 16(10Q26.3) WILD-TYPE
  CLUS_1                           46                             93
  CLUS_2                           80                             30
  CLUS_3                           13                            201
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q26.3) MUTATED       60     59     12      7
  DEL PEAK 16(10Q26.3) WILD-TYPE    139      6     41    134
D35V4, multiclass
        clus
vv       DEL PEAK 16(10Q26.3) MUTATED DEL PEAK 16(10Q26.3) WILD-TYPE
  CLUS_1                           60                            139
  CLUS_2                           59                              6
  CLUS_3                           12                             41
  CLUS_4                            7                            134
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q26.3) MUTATED       13     35     14     11
  DEL PEAK 16(10Q26.3) WILD-TYPE     39     27     54     63
D35V5, multiclass
        clus
vv       DEL PEAK 16(10Q26.3) MUTATED DEL PEAK 16(10Q26.3) WILD-TYPE
  CLUS_1                           13                             39
  CLUS_2                           35                             27
  CLUS_3                           14                             54
  CLUS_4                           11                             63
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q26.3) MUTATED        2     51     20
  DEL PEAK 16(10Q26.3) WILD-TYPE      6     78     99
D35V6, multiclass
        clus
vv       DEL PEAK 16(10Q26.3) MUTATED DEL PEAK 16(10Q26.3) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                           51                             78
  CLUS_3                           20                             99
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(10Q26.3) MUTATED       31     64      3     27      9      4
  DEL PEAK 16(10Q26.3) WILD-TYPE     85     25     91     99      2     21
D35V7, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q26.3) MUTATED      107      3     28
  DEL PEAK 16(10Q26.3) WILD-TYPE    117     77    129
D35V8, multiclass
        clus
vv       DEL PEAK 16(10Q26.3) MUTATED DEL PEAK 16(10Q26.3) WILD-TYPE
  CLUS_1                          107                            117
  CLUS_2                            3                             77
  CLUS_3                           28                            129
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(10Q26.3) MUTATED       10     48     12      4     28     27
  DEL PEAK 16(10Q26.3) WILD-TYPE     52     28     18     37    108     36
                                vv
clus                             CLUS_7
  DEL PEAK 16(10Q26.3) MUTATED        4
  DEL PEAK 16(10Q26.3) WILD-TYPE     23
D35V9, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q26.3) MUTATED       37      4     92
  DEL PEAK 16(10Q26.3) WILD-TYPE    157     12    133
D35V10, multiclass
        clus
vv       DEL PEAK 16(10Q26.3) MUTATED DEL PEAK 16(10Q26.3) WILD-TYPE
  CLUS_1                           37                            157
  CLUS_2                            4                             12
  CLUS_3                           92                            133
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(10Q26.3) MUTATED       18     56      7     22     15      7
  DEL PEAK 16(10Q26.3) WILD-TYPE     69     21     48    102     24     15
                                vv
clus                             CLUS_7
  DEL PEAK 16(10Q26.3) MUTATED        8
  DEL PEAK 16(10Q26.3) WILD-TYPE     23
D35V11, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q26.3) MUTATED        1     42     90
  DEL PEAK 16(10Q26.3) WILD-TYPE      4    154    144
D35V12, multiclass
        clus
vv       DEL PEAK 16(10Q26.3) MUTATED DEL PEAK 16(10Q26.3) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                           42                            154
  CLUS_3                           90                            144

Clustering(36) Variable = DEL PEAK 17(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.5) MUTATED        3      3      1
  DEL PEAK 17(11P15.5) WILD-TYPE      6      7      7
D36V1, multiclass
        clus
vv       DEL PEAK 17(11P15.5) MUTATED DEL PEAK 17(11P15.5) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            3                              7
  CLUS_3                            1                              7
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(11P15.5) MUTATED        0      0      3      4
  DEL PEAK 17(11P15.5) WILD-TYPE      7      6      7      0
D36V2, multiclass
        clus
vv       DEL PEAK 17(11P15.5) MUTATED DEL PEAK 17(11P15.5) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            0                              6
  CLUS_3                            3                              7
  CLUS_4                            4                              0
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.5) MUTATED       65     18     12
  DEL PEAK 17(11P15.5) WILD-TYPE     74     92    202
D36V3, multiclass
        clus
vv       DEL PEAK 17(11P15.5) MUTATED DEL PEAK 17(11P15.5) WILD-TYPE
  CLUS_1                           65                             74
  CLUS_2                           18                             92
  CLUS_3                           12                            202
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(11P15.5) MUTATED       78     12      5      0
  DEL PEAK 17(11P15.5) WILD-TYPE    121     53     48    141
D36V4, multiclass
        clus
vv       DEL PEAK 17(11P15.5) MUTATED DEL PEAK 17(11P15.5) WILD-TYPE
  CLUS_1                           78                            121
  CLUS_2                           12                             53
  CLUS_3                            5                             48
  CLUS_4                            0                            141
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(11P15.5) MUTATED       13     19      9     15
  DEL PEAK 17(11P15.5) WILD-TYPE     39     43     59     59
D36V5, multiclass
        clus
vv       DEL PEAK 17(11P15.5) MUTATED DEL PEAK 17(11P15.5) WILD-TYPE
  CLUS_1                           13                             39
  CLUS_2                           19                             43
  CLUS_3                            9                             59
  CLUS_4                           15                             59
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.5) MUTATED        1     28     27
  DEL PEAK 17(11P15.5) WILD-TYPE      7    101     92
D36V6, multiclass
        clus
vv       DEL PEAK 17(11P15.5) MUTATED DEL PEAK 17(11P15.5) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                           28                            101
  CLUS_3                           27                             92
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(11P15.5) MUTATED       34     24      0     21      7      8
  DEL PEAK 17(11P15.5) WILD-TYPE     82     65     94    105      4     17
D36V7, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.5) MUTATED       69      0     25
  DEL PEAK 17(11P15.5) WILD-TYPE    155     80    132
D36V8, multiclass
        clus
vv       DEL PEAK 17(11P15.5) MUTATED DEL PEAK 17(11P15.5) WILD-TYPE
  CLUS_1                           69                            155
  CLUS_2                            0                             80
  CLUS_3                           25                            132
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(11P15.5) MUTATED       14     20     10      4     26     14
  DEL PEAK 17(11P15.5) WILD-TYPE     48     56     20     37    110     49
                                vv
clus                             CLUS_7
  DEL PEAK 17(11P15.5) MUTATED        4
  DEL PEAK 17(11P15.5) WILD-TYPE     23
D36V9, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.5) MUTATED       36      4     52
  DEL PEAK 17(11P15.5) WILD-TYPE    158     12    173
D36V10, multiclass
        clus
vv       DEL PEAK 17(11P15.5) MUTATED DEL PEAK 17(11P15.5) WILD-TYPE
  CLUS_1                           36                            158
  CLUS_2                            4                             12
  CLUS_3                           52                            173
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(11P15.5) MUTATED       23     16      6     22     10      8
  DEL PEAK 17(11P15.5) WILD-TYPE     64     61     49    102     29     14
                                vv
clus                             CLUS_7
  DEL PEAK 17(11P15.5) MUTATED        7
  DEL PEAK 17(11P15.5) WILD-TYPE     24
D36V11, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.5) MUTATED        3     38     51
  DEL PEAK 17(11P15.5) WILD-TYPE      2    158    183
D36V12, multiclass
        clus
vv       DEL PEAK 17(11P15.5) MUTATED DEL PEAK 17(11P15.5) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                           38                            158
  CLUS_3                           51                            183

Clustering(37) Variable = DEL PEAK 18(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(12P13.1) MUTATED        2      0      0
  DEL PEAK 18(12P13.1) WILD-TYPE      7     10      8
D37V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 18(12P13.1) MUTATED"
clus
  DEL PEAK 18(12P13.1) MUTATED DEL PEAK 18(12P13.1) WILD-TYPE 
                             2                             25 
                    TCGA-CS-4942                     TCGA-CS-4944 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-CS-5390                     TCGA-CS-5394 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-CS-5395                     TCGA-CS-5396 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-DB-5270                     TCGA-DB-5273 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-DB-5274                     TCGA-DB-5275 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-DB-5276                     TCGA-DB-5277 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-DB-5278                     TCGA-DB-5280 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-DB-5281                     TCGA-DH-5140 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-DH-5141                     TCGA-DH-5142 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-DH-5143                     TCGA-DH-5144 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-E1-5303                     TCGA-E1-5304 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5318 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-E1-5322 
"DEL PEAK 18(12P13.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(12P13.1) MUTATED        0      0      2      0
  DEL PEAK 18(12P13.1) WILD-TYPE      7      6      8      4
D37V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 18(12P13.1) MUTATED"
clus
  DEL PEAK 18(12P13.1) MUTATED DEL PEAK 18(12P13.1) WILD-TYPE 
                             2                             25 
                    TCGA-CS-4942                     TCGA-CS-4944 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-CS-5390                     TCGA-CS-5394 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-CS-5395                     TCGA-CS-5396 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-DB-5270                     TCGA-DB-5273 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-DB-5274                     TCGA-DB-5275 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-DB-5276                     TCGA-DB-5277 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-DB-5278                     TCGA-DB-5280 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-DB-5281                     TCGA-DH-5140 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-DH-5141                     TCGA-DH-5142 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-DH-5143                     TCGA-DH-5144 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-E1-5303                     TCGA-E1-5304 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5318 
"DEL PEAK 18(12P13.1) WILD-TYPE" "DEL PEAK 18(12P13.1) WILD-TYPE" 
                    TCGA-E1-5322 
"DEL PEAK 18(12P13.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(12P13.1) MUTATED       19      7     11
  DEL PEAK 18(12P13.1) WILD-TYPE    120    103    203
D37V3, multiclass
        clus
vv       DEL PEAK 18(12P13.1) MUTATED DEL PEAK 18(12P13.1) WILD-TYPE
  CLUS_1                           19                            120
  CLUS_2                            7                            103
  CLUS_3                           11                            203
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(12P13.1) MUTATED       27      4      1      5
  DEL PEAK 18(12P13.1) WILD-TYPE    172     61     52    136
D37V4, multiclass
        clus
vv       DEL PEAK 18(12P13.1) MUTATED DEL PEAK 18(12P13.1) WILD-TYPE
  CLUS_1                           27                            172
  CLUS_2                            4                             61
  CLUS_3                            1                             52
  CLUS_4                            5                            136
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(12P13.1) MUTATED        6      7      2      5
  DEL PEAK 18(12P13.1) WILD-TYPE     46     55     66     69
D37V5, multiclass
        clus
vv       DEL PEAK 18(12P13.1) MUTATED DEL PEAK 18(12P13.1) WILD-TYPE
  CLUS_1                            6                             46
  CLUS_2                            7                             55
  CLUS_3                            2                             66
  CLUS_4                            5                             69
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(12P13.1) MUTATED        0     11      9
  DEL PEAK 18(12P13.1) WILD-TYPE      8    118    110
D37V6, multiclass
        clus
vv       DEL PEAK 18(12P13.1) MUTATED DEL PEAK 18(12P13.1) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                           11                            118
  CLUS_3                            9                            110
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(12P13.1) MUTATED       15      8      2      9      3      0
  DEL PEAK 18(12P13.1) WILD-TYPE    101     81     92    117      8     25
D37V7, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(12P13.1) MUTATED       28      1      8
  DEL PEAK 18(12P13.1) WILD-TYPE    196     79    149
D37V8, multiclass
        clus
vv       DEL PEAK 18(12P13.1) MUTATED DEL PEAK 18(12P13.1) WILD-TYPE
  CLUS_1                           28                            196
  CLUS_2                            1                             79
  CLUS_3                            8                            149
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(12P13.1) MUTATED        8      6      7      2      7      7
  DEL PEAK 18(12P13.1) WILD-TYPE     54     70     23     39    129     56
                                vv
clus                             CLUS_7
  DEL PEAK 18(12P13.1) MUTATED        0
  DEL PEAK 18(12P13.1) WILD-TYPE     27
D37V9, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(12P13.1) MUTATED       13      1     23
  DEL PEAK 18(12P13.1) WILD-TYPE    181     15    202
D37V10, multiclass
        clus
vv       DEL PEAK 18(12P13.1) MUTATED DEL PEAK 18(12P13.1) WILD-TYPE
  CLUS_1                           13                            181
  CLUS_2                            1                             15
  CLUS_3                           23                            202
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(12P13.1) MUTATED       12      6      3      6      5      4
  DEL PEAK 18(12P13.1) WILD-TYPE     75     71     52    118     34     18
                                vv
clus                             CLUS_7
  DEL PEAK 18(12P13.1) MUTATED        1
  DEL PEAK 18(12P13.1) WILD-TYPE     30
D37V11, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(12P13.1) MUTATED        0     16     21
  DEL PEAK 18(12P13.1) WILD-TYPE      5    180    213
D37V12, multiclass
        clus
vv       DEL PEAK 18(12P13.1) MUTATED DEL PEAK 18(12P13.1) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                           16                            180
  CLUS_3                           21                            213

Clustering(38) Variable = DEL PEAK 19(12Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(12Q12) MUTATED        1      2      1
  DEL PEAK 19(12Q12) WILD-TYPE      8      8      7
D38V1, multiclass
        clus
vv       DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE
  CLUS_1                          1                            8
  CLUS_2                          2                            8
  CLUS_3                          1                            7
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(12Q12) MUTATED        0      0      1      3
  DEL PEAK 19(12Q12) WILD-TYPE      7      6      9      1
D38V2, multiclass
        clus
vv       DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE
  CLUS_1                          0                            7
  CLUS_2                          0                            6
  CLUS_3                          1                            9
  CLUS_4                          3                            1
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(12Q12) MUTATED       43      5     16
  DEL PEAK 19(12Q12) WILD-TYPE     96    105    198
D38V3, multiclass
        clus
vv       DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE
  CLUS_1                         43                           96
  CLUS_2                          5                          105
  CLUS_3                         16                          198
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(12Q12) MUTATED       51      3      4      6
  DEL PEAK 19(12Q12) WILD-TYPE    148     62     49    135
D38V4, multiclass
        clus
vv       DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE
  CLUS_1                         51                          148
  CLUS_2                          3                           62
  CLUS_3                          4                           49
  CLUS_4                          6                          135
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(12Q12) MUTATED        6      9      9     12
  DEL PEAK 19(12Q12) WILD-TYPE     46     53     59     62
D38V5, multiclass
        clus
vv       DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE
  CLUS_1                          6                           46
  CLUS_2                          9                           53
  CLUS_3                          9                           59
  CLUS_4                         12                           62
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(12Q12) MUTATED        1     17     18
  DEL PEAK 19(12Q12) WILD-TYPE      7    112    101
D38V6, multiclass
        clus
vv       DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE
  CLUS_1                          1                            7
  CLUS_2                         17                          112
  CLUS_3                         18                          101
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(12Q12) MUTATED       22     16      3     15      3      5
  DEL PEAK 19(12Q12) WILD-TYPE     94     73     91    111      8     20
D38V7, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(12Q12) MUTATED       45      2     17
  DEL PEAK 19(12Q12) WILD-TYPE    179     78    140
D38V8, multiclass
        clus
vv       DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE
  CLUS_1                         45                          179
  CLUS_2                          2                           78
  CLUS_3                         17                          140
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 19(12Q12) MUTATED       10     11     12      3     17      8      1
  DEL PEAK 19(12Q12) WILD-TYPE     52     65     18     38    119     55     26
D38V9, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(12Q12) MUTATED       27      4     31
  DEL PEAK 19(12Q12) WILD-TYPE    167     12    194
D38V10, multiclass
        clus
vv       DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE
  CLUS_1                         27                          167
  CLUS_2                          4                           12
  CLUS_3                         31                          194
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 19(12Q12) MUTATED       14      9      4     13      8     10      4
  DEL PEAK 19(12Q12) WILD-TYPE     73     68     51    111     31     12     27
D38V11, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(12Q12) MUTATED        2     27     33
  DEL PEAK 19(12Q12) WILD-TYPE      3    169    201
D38V12, multiclass
        clus
vv       DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE
  CLUS_1                          2                            3
  CLUS_2                         27                          169
  CLUS_3                         33                          201

Clustering(39) Variable = DEL PEAK 20(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q14.2) MUTATED        5      3      1
  DEL PEAK 20(13Q14.2) WILD-TYPE      4      7      7
D39V1, multiclass
        clus
vv       DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                            3                              7
  CLUS_3                            1                              7
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(13Q14.2) MUTATED        0      0      5      4
  DEL PEAK 20(13Q14.2) WILD-TYPE      7      6      5      0
D39V2, multiclass
        clus
vv       DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            0                              6
  CLUS_3                            5                              5
  CLUS_4                            4                              0
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q14.2) MUTATED       71     29     29
  DEL PEAK 20(13Q14.2) WILD-TYPE     68     81    185
D39V3, multiclass
        clus
vv       DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  CLUS_1                           71                             68
  CLUS_2                           29                             81
  CLUS_3                           29                            185
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(13Q14.2) MUTATED       73     21     10     25
  DEL PEAK 20(13Q14.2) WILD-TYPE    126     44     43    116
D39V4, multiclass
        clus
vv       DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  CLUS_1                           73                            126
  CLUS_2                           21                             44
  CLUS_3                           10                             43
  CLUS_4                           25                            116
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(13Q14.2) MUTATED        9     26     18     20
  DEL PEAK 20(13Q14.2) WILD-TYPE     43     36     50     54
D39V5, multiclass
        clus
vv       DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  CLUS_1                            9                             43
  CLUS_2                           26                             36
  CLUS_3                           18                             50
  CLUS_4                           20                             54
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q14.2) MUTATED        3     37     33
  DEL PEAK 20(13Q14.2) WILD-TYPE      5     92     86
D39V6, multiclass
        clus
vv       DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                           37                             92
  CLUS_3                           33                             86
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(13Q14.2) MUTATED       39     31     17     28      8      6
  DEL PEAK 20(13Q14.2) WILD-TYPE     77     58     77     98      3     19
D39V7, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q14.2) MUTATED       82     14     33
  DEL PEAK 20(13Q14.2) WILD-TYPE    142     66    124
D39V8, multiclass
        clus
vv       DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  CLUS_1                           82                            142
  CLUS_2                           14                             66
  CLUS_3                           33                            124
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(13Q14.2) MUTATED       19     21     16     11     28     21
  DEL PEAK 20(13Q14.2) WILD-TYPE     43     55     14     30    108     42
                                vv
clus                             CLUS_7
  DEL PEAK 20(13Q14.2) MUTATED        6
  DEL PEAK 20(13Q14.2) WILD-TYPE     21
D39V9, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q14.2) MUTATED       46      4     72
  DEL PEAK 20(13Q14.2) WILD-TYPE    148     12    153
D39V10, multiclass
        clus
vv       DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  CLUS_1                           46                            148
  CLUS_2                            4                             12
  CLUS_3                           72                            153
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(13Q14.2) MUTATED       28     26     17     25      8     11
  DEL PEAK 20(13Q14.2) WILD-TYPE     59     51     38     99     31     11
                                vv
clus                             CLUS_7
  DEL PEAK 20(13Q14.2) MUTATED        7
  DEL PEAK 20(13Q14.2) WILD-TYPE     24
D39V11, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q14.2) MUTATED        2     46     74
  DEL PEAK 20(13Q14.2) WILD-TYPE      3    150    160
D39V12, multiclass
        clus
vv       DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                           46                            150
  CLUS_3                           74                            160

Clustering(40) Variable = DEL PEAK 21(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED        5      3      1
  DEL PEAK 21(13Q14.2) WILD-TYPE      4      7      7
D40V1, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                            3                              7
  CLUS_3                            1                              7
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED        0      0      5      4
  DEL PEAK 21(13Q14.2) WILD-TYPE      7      6      5      0
D40V2, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            0                              6
  CLUS_3                            5                              5
  CLUS_4                            4                              0
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       72     30     29
  DEL PEAK 21(13Q14.2) WILD-TYPE     67     80    185
D40V3, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           72                             67
  CLUS_2                           30                             80
  CLUS_3                           29                            185
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED       74     22     10     25
  DEL PEAK 21(13Q14.2) WILD-TYPE    125     43     43    116
D40V4, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           74                            125
  CLUS_2                           22                             43
  CLUS_3                           10                             43
  CLUS_4                           25                            116
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED       10     27     18     20
  DEL PEAK 21(13Q14.2) WILD-TYPE     42     35     50     54
D40V5, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           10                             42
  CLUS_2                           27                             35
  CLUS_3                           18                             50
  CLUS_4                           20                             54
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED        3     39     33
  DEL PEAK 21(13Q14.2) WILD-TYPE      5     90     86
D40V6, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                           39                             90
  CLUS_3                           33                             86
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(13Q14.2) MUTATED       40     32     17     28      8      6
  DEL PEAK 21(13Q14.2) WILD-TYPE     76     57     77     98      3     19
D40V7, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       84     14     33
  DEL PEAK 21(13Q14.2) WILD-TYPE    140     66    124
D40V8, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           84                            140
  CLUS_2                           14                             66
  CLUS_3                           33                            124
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(13Q14.2) MUTATED       20     22     16     11     28     21
  DEL PEAK 21(13Q14.2) WILD-TYPE     42     54     14     30    108     42
                                vv
clus                             CLUS_7
  DEL PEAK 21(13Q14.2) MUTATED        6
  DEL PEAK 21(13Q14.2) WILD-TYPE     21
D40V9, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       46      4     74
  DEL PEAK 21(13Q14.2) WILD-TYPE    148     12    151
D40V10, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           46                            148
  CLUS_2                            4                             12
  CLUS_3                           74                            151
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(13Q14.2) MUTATED       29     27     17     25      8     11
  DEL PEAK 21(13Q14.2) WILD-TYPE     58     50     38     99     31     11
                                vv
clus                             CLUS_7
  DEL PEAK 21(13Q14.2) MUTATED        7
  DEL PEAK 21(13Q14.2) WILD-TYPE     24
D40V11, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED        2     46     76
  DEL PEAK 21(13Q14.2) WILD-TYPE      3    150    158
D40V12, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                           46                            150
  CLUS_3                           76                            158

Clustering(41) Variable = DEL PEAK 22(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q34) MUTATED        2      2      0
  DEL PEAK 22(13Q34) WILD-TYPE      7      8      8
D41V1, multiclass
        clus
vv       DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE
  CLUS_1                          2                            7
  CLUS_2                          2                            8
  CLUS_3                          0                            8
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(13Q34) MUTATED        0      0      2      2
  DEL PEAK 22(13Q34) WILD-TYPE      7      6      8      2
D41V2, multiclass
        clus
vv       DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE
  CLUS_1                          0                            7
  CLUS_2                          0                            6
  CLUS_3                          2                            8
  CLUS_4                          2                            2
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q34) MUTATED       50     23     25
  DEL PEAK 22(13Q34) WILD-TYPE     89     87    189
D41V3, multiclass
        clus
vv       DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         50                           89
  CLUS_2                         23                           87
  CLUS_3                         25                          189
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(13Q34) MUTATED       45     21      8     24
  DEL PEAK 22(13Q34) WILD-TYPE    154     44     45    117
D41V4, multiclass
        clus
vv       DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         45                          154
  CLUS_2                         21                           44
  CLUS_3                          8                           45
  CLUS_4                         24                          117
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(13Q34) MUTATED        7     20     12     15
  DEL PEAK 22(13Q34) WILD-TYPE     45     42     56     59
D41V5, multiclass
        clus
vv       DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE
  CLUS_1                          7                           45
  CLUS_2                         20                           42
  CLUS_3                         12                           56
  CLUS_4                         15                           59
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q34) MUTATED        3     27     24
  DEL PEAK 22(13Q34) WILD-TYPE      5    102     95
D41V6, multiclass
        clus
vv       DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE
  CLUS_1                          3                            5
  CLUS_2                         27                          102
  CLUS_3                         24                           95
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(13Q34) MUTATED       27     25     16     20      6      4
  DEL PEAK 22(13Q34) WILD-TYPE     89     64     78    106      5     21
D41V7, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q34) MUTATED       61     14     23
  DEL PEAK 22(13Q34) WILD-TYPE    163     66    134
D41V8, multiclass
        clus
vv       DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         61                          163
  CLUS_2                         14                           66
  CLUS_3                         23                          134
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 22(13Q34) MUTATED       16     16     13      9     20     16      3
  DEL PEAK 22(13Q34) WILD-TYPE     46     60     17     32    116     47     24
D41V9, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q34) MUTATED       33      4     56
  DEL PEAK 22(13Q34) WILD-TYPE    161     12    169
D41V10, multiclass
        clus
vv       DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         33                          161
  CLUS_2                          4                           12
  CLUS_3                         56                          169
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 22(13Q34) MUTATED       21     22     14     18      7      8      3
  DEL PEAK 22(13Q34) WILD-TYPE     66     55     41    106     32     14     28
D41V11, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q34) MUTATED        2     33     58
  DEL PEAK 22(13Q34) WILD-TYPE      3    163    176
D41V12, multiclass
        clus
vv       DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE
  CLUS_1                          2                            3
  CLUS_2                         33                          163
  CLUS_3                         58                          176

Clustering(42) Variable = DEL PEAK 23(14Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(14Q24.3) MUTATED        4      2      1
  DEL PEAK 23(14Q24.3) WILD-TYPE      5      8      7
D42V1, multiclass
        clus
vv       DEL PEAK 23(14Q24.3) MUTATED DEL PEAK 23(14Q24.3) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            2                              8
  CLUS_3                            1                              7
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(14Q24.3) MUTATED        0      1      4      2
  DEL PEAK 23(14Q24.3) WILD-TYPE      7      5      6      2
D42V2, multiclass
        clus
vv       DEL PEAK 23(14Q24.3) MUTATED DEL PEAK 23(14Q24.3) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            1                              5
  CLUS_3                            4                              6
  CLUS_4                            2                              2
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(14Q24.3) MUTATED       31     37     39
  DEL PEAK 23(14Q24.3) WILD-TYPE    108     73    175
D42V3, multiclass
        clus
vv       DEL PEAK 23(14Q24.3) MUTATED DEL PEAK 23(14Q24.3) WILD-TYPE
  CLUS_1                           31                            108
  CLUS_2                           37                             73
  CLUS_3                           39                            175
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(14Q24.3) MUTATED       45     25      9     27
  DEL PEAK 23(14Q24.3) WILD-TYPE    154     40     44    114
D42V4, multiclass
        clus
vv       DEL PEAK 23(14Q24.3) MUTATED DEL PEAK 23(14Q24.3) WILD-TYPE
  CLUS_1                           45                            154
  CLUS_2                           25                             40
  CLUS_3                            9                             44
  CLUS_4                           27                            114
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(14Q24.3) MUTATED        6     24     18     11
  DEL PEAK 23(14Q24.3) WILD-TYPE     46     38     50     63
D42V5, multiclass
        clus
vv       DEL PEAK 23(14Q24.3) MUTATED DEL PEAK 23(14Q24.3) WILD-TYPE
  CLUS_1                            6                             46
  CLUS_2                           24                             38
  CLUS_3                           18                             50
  CLUS_4                           11                             63
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(14Q24.3) MUTATED        2     39     18
  DEL PEAK 23(14Q24.3) WILD-TYPE      6     90    101
D42V6, multiclass
        clus
vv       DEL PEAK 23(14Q24.3) MUTATED DEL PEAK 23(14Q24.3) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                           39                             90
  CLUS_3                           18                            101
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(14Q24.3) MUTATED       20     34     20     21      6      5
  DEL PEAK 23(14Q24.3) WILD-TYPE     96     55     74    105      5     20
D42V7, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(14Q24.3) MUTATED       67     15     24
  DEL PEAK 23(14Q24.3) WILD-TYPE    157     65    133
D42V8, multiclass
        clus
vv       DEL PEAK 23(14Q24.3) MUTATED DEL PEAK 23(14Q24.3) WILD-TYPE
  CLUS_1                           67                            157
  CLUS_2                           15                             65
  CLUS_3                           24                            133
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(14Q24.3) MUTATED       10     36      3      8     28     13
  DEL PEAK 23(14Q24.3) WILD-TYPE     52     40     27     33    108     50
                                vv
clus                             CLUS_7
  DEL PEAK 23(14Q24.3) MUTATED        6
  DEL PEAK 23(14Q24.3) WILD-TYPE     21
D42V9, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(14Q24.3) MUTATED       32      5     67
  DEL PEAK 23(14Q24.3) WILD-TYPE    162     11    158
D42V10, multiclass
        clus
vv       DEL PEAK 23(14Q24.3) MUTATED DEL PEAK 23(14Q24.3) WILD-TYPE
  CLUS_1                           32                            162
  CLUS_2                            5                             11
  CLUS_3                           67                            158
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(14Q24.3) MUTATED       19     35     10     21      6      4
  DEL PEAK 23(14Q24.3) WILD-TYPE     68     42     45    103     33     18
                                vv
clus                             CLUS_7
  DEL PEAK 23(14Q24.3) MUTATED        9
  DEL PEAK 23(14Q24.3) WILD-TYPE     22
D42V11, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(14Q24.3) MUTATED        3     31     70
  DEL PEAK 23(14Q24.3) WILD-TYPE      2    165    164
D42V12, multiclass
        clus
vv       DEL PEAK 23(14Q24.3) MUTATED DEL PEAK 23(14Q24.3) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                           31                            165
  CLUS_3                           70                            164

Clustering(43) Variable = DEL PEAK 24(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18Q23) MUTATED        2      3      0
  DEL PEAK 24(18Q23) WILD-TYPE      7      7      8
D43V1, multiclass
        clus
vv       DEL PEAK 24(18Q23) MUTATED DEL PEAK 24(18Q23) WILD-TYPE
  CLUS_1                          2                            7
  CLUS_2                          3                            7
  CLUS_3                          0                            8
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(18Q23) MUTATED        1      0      2      2
  DEL PEAK 24(18Q23) WILD-TYPE      6      6      8      2
D43V2, multiclass
        clus
vv       DEL PEAK 24(18Q23) MUTATED DEL PEAK 24(18Q23) WILD-TYPE
  CLUS_1                          1                            6
  CLUS_2                          0                            6
  CLUS_3                          2                            8
  CLUS_4                          2                            2
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18Q23) MUTATED       21     13     37
  DEL PEAK 24(18Q23) WILD-TYPE    118     97    177
D43V3, multiclass
        clus
vv       DEL PEAK 24(18Q23) MUTATED DEL PEAK 24(18Q23) WILD-TYPE
  CLUS_1                         21                          118
  CLUS_2                         13                           97
  CLUS_3                         37                          177
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(18Q23) MUTATED       28     10      2     31
  DEL PEAK 24(18Q23) WILD-TYPE    171     55     51    110
D43V4, multiclass
        clus
vv       DEL PEAK 24(18Q23) MUTATED DEL PEAK 24(18Q23) WILD-TYPE
  CLUS_1                         28                          171
  CLUS_2                         10                           55
  CLUS_3                          2                           51
  CLUS_4                         31                          110
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(18Q23) MUTATED        6     13     13     10
  DEL PEAK 24(18Q23) WILD-TYPE     46     49     55     64
D43V5, multiclass
        clus
vv       DEL PEAK 24(18Q23) MUTATED DEL PEAK 24(18Q23) WILD-TYPE
  CLUS_1                          6                           46
  CLUS_2                         13                           49
  CLUS_3                         13                           55
  CLUS_4                         10                           64
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18Q23) MUTATED        2     26     14
  DEL PEAK 24(18Q23) WILD-TYPE      6    103    105
D43V6, multiclass
        clus
vv       DEL PEAK 24(18Q23) MUTATED DEL PEAK 24(18Q23) WILD-TYPE
  CLUS_1                          2                            6
  CLUS_2                         26                          103
  CLUS_3                         14                          105
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(18Q23) MUTATED       18     12     21     16      1      3
  DEL PEAK 24(18Q23) WILD-TYPE     98     77     73    110     10     22
D43V7, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18Q23) MUTATED       34     15     22
  DEL PEAK 24(18Q23) WILD-TYPE    190     65    135
D43V8, multiclass
        clus
vv       DEL PEAK 24(18Q23) MUTATED DEL PEAK 24(18Q23) WILD-TYPE
  CLUS_1                         34                          190
  CLUS_2                         15                           65
  CLUS_3                         22                          135
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 24(18Q23) MUTATED       11     14      4      7     20     11      2
  DEL PEAK 24(18Q23) WILD-TYPE     51     62     26     34    116     52     25
D43V9, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18Q23) MUTATED       29      0     40
  DEL PEAK 24(18Q23) WILD-TYPE    165     16    185
D43V10, multiclass
        clus
vv       DEL PEAK 24(18Q23) MUTATED DEL PEAK 24(18Q23) WILD-TYPE
  CLUS_1                         29                          165
  CLUS_2                          0                           16
  CLUS_3                         40                          185
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 24(18Q23) MUTATED       15     11     12     18      5      3      5
  DEL PEAK 24(18Q23) WILD-TYPE     72     66     43    106     34     19     26
D43V11, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18Q23) MUTATED        0     30     39
  DEL PEAK 24(18Q23) WILD-TYPE      5    166    195
D43V12, multiclass
        clus
vv       DEL PEAK 24(18Q23) MUTATED DEL PEAK 24(18Q23) WILD-TYPE
  CLUS_1                          0                            5
  CLUS_2                         30                          166
  CLUS_3                         39                          195

Clustering(44) Variable = DEL PEAK 25(19Q13.42) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19Q13.42) MUTATED        7     10      4
  DEL PEAK 25(19Q13.42) WILD-TYPE      2      0      4
D44V1, multiclass
        clus
vv       DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE
  CLUS_1                             7                               2
  CLUS_2                            10                               0
  CLUS_3                             4                               4
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(19Q13.42) MUTATED        7      3      7      4
  DEL PEAK 25(19Q13.42) WILD-TYPE      0      3      3      0
D44V2, multiclass
        clus
vv       DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE
  CLUS_1                             7                               0
  CLUS_2                             3                               3
  CLUS_3                             7                               3
  CLUS_4                             4                               0
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19Q13.42) MUTATED       43     31    176
  DEL PEAK 25(19Q13.42) WILD-TYPE     96     79     38
D44V3, multiclass
        clus
vv       DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE
  CLUS_1                            43                              96
  CLUS_2                            31                              79
  CLUS_3                           176                              38
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(19Q13.42) MUTATED       80      8     18    141
  DEL PEAK 25(19Q13.42) WILD-TYPE    119     57     35      0
D44V4, multiclass
        clus
vv       DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE
  CLUS_1                            80                             119
  CLUS_2                             8                              57
  CLUS_3                            18                              35
  CLUS_4                           141                               0
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(19Q13.42) MUTATED       17     29     40     48
  DEL PEAK 25(19Q13.42) WILD-TYPE     35     33     28     26
D44V5, multiclass
        clus
vv       DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE
  CLUS_1                            17                              35
  CLUS_2                            29                              33
  CLUS_3                            40                              28
  CLUS_4                            48                              26
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19Q13.42) MUTATED        5     64     65
  DEL PEAK 25(19Q13.42) WILD-TYPE      3     65     54
D44V6, multiclass
        clus
vv       DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE
  CLUS_1                             5                               3
  CLUS_2                            64                              65
  CLUS_3                            65                              54
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(19Q13.42) MUTATED       42     22     93     73      6     13
  DEL PEAK 25(19Q13.42) WILD-TYPE     74     67      1     53      5     12
D44V7, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19Q13.42) MUTATED       70     80     99
  DEL PEAK 25(19Q13.42) WILD-TYPE    154      0     58
D44V8, multiclass
        clus
vv       DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE
  CLUS_1                            70                             154
  CLUS_2                            80                               0
  CLUS_3                            99                              58
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(19Q13.42) MUTATED       23     26     12     40     85     33
  DEL PEAK 25(19Q13.42) WILD-TYPE     39     50     18      1     51     30
                                 vv
clus                              CLUS_7
  DEL PEAK 25(19Q13.42) MUTATED       17
  DEL PEAK 25(19Q13.42) WILD-TYPE     10
D44V9, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19Q13.42) MUTATED      123     10    103
  DEL PEAK 25(19Q13.42) WILD-TYPE     71      6    122
D44V10, multiclass
        clus
vv       DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE
  CLUS_1                           123                              71
  CLUS_2                            10                               6
  CLUS_3                           103                             122
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(19Q13.42) MUTATED       37     22     52     75     21     12
  DEL PEAK 25(19Q13.42) WILD-TYPE     50     55      3     49     18     10
                                 vv
clus                              CLUS_7
  DEL PEAK 25(19Q13.42) MUTATED       17
  DEL PEAK 25(19Q13.42) WILD-TYPE     14
D44V11, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19Q13.42) MUTATED        2    117    117
  DEL PEAK 25(19Q13.42) WILD-TYPE      3     79    117
D44V12, multiclass
        clus
vv       DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE
  CLUS_1                             2                               3
  CLUS_2                           117                              79
  CLUS_3                           117                             117

Clustering(45) Variable = DEL PEAK 26(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(22Q13.31) MUTATED        4      1      1
  DEL PEAK 26(22Q13.31) WILD-TYPE      5      9      7
D45V1, multiclass
        clus
vv       DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE
  CLUS_1                             4                               5
  CLUS_2                             1                               9
  CLUS_3                             1                               7
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(22Q13.31) MUTATED        0      0      4      2
  DEL PEAK 26(22Q13.31) WILD-TYPE      7      6      6      2
D45V2, multiclass
        clus
vv       DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE
  CLUS_1                             0                               7
  CLUS_2                             0                               6
  CLUS_3                             4                               6
  CLUS_4                             2                               2
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(22Q13.31) MUTATED       33     31      4
  DEL PEAK 26(22Q13.31) WILD-TYPE    106     79    210
D45V3, multiclass
        clus
vv       DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE
  CLUS_1                            33                             106
  CLUS_2                            31                              79
  CLUS_3                             4                             210
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(22Q13.31) MUTATED       34     23      7      3
  DEL PEAK 26(22Q13.31) WILD-TYPE    165     42     46    138
D45V4, multiclass
        clus
vv       DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE
  CLUS_1                            34                             165
  CLUS_2                            23                              42
  CLUS_3                             7                              46
  CLUS_4                             3                             138
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(22Q13.31) MUTATED        4     21      8      6
  DEL PEAK 26(22Q13.31) WILD-TYPE     48     41     60     68
D45V5, multiclass
        clus
vv       DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE
  CLUS_1                             4                              48
  CLUS_2                            21                              41
  CLUS_3                             8                              60
  CLUS_4                             6                              68
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(22Q13.31) MUTATED        1     28     10
  DEL PEAK 26(22Q13.31) WILD-TYPE      7    101    109
D45V6, multiclass
        clus
vv       DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE
  CLUS_1                             1                               7
  CLUS_2                            28                             101
  CLUS_3                            10                             109
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(22Q13.31) MUTATED       14     31      2     13      5      2
  DEL PEAK 26(22Q13.31) WILD-TYPE    102     58     92    113      6     23
D45V7, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(22Q13.31) MUTATED       52      2     13
  DEL PEAK 26(22Q13.31) WILD-TYPE    172     78    144
D45V8, multiclass
        clus
vv       DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE
  CLUS_1                            52                             172
  CLUS_2                             2                              78
  CLUS_3                            13                             144
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(22Q13.31) MUTATED        7     20      8      5     15      8
  DEL PEAK 26(22Q13.31) WILD-TYPE     55     56     22     36    121     55
                                 vv
clus                              CLUS_7
  DEL PEAK 26(22Q13.31) MUTATED        3
  DEL PEAK 26(22Q13.31) WILD-TYPE     24
D45V9, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(22Q13.31) MUTATED       22      1     43
  DEL PEAK 26(22Q13.31) WILD-TYPE    172     15    182
D45V10, multiclass
        clus
vv       DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE
  CLUS_1                            22                             172
  CLUS_2                             1                              15
  CLUS_3                            43                             182
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(22Q13.31) MUTATED       12     21      5     12      5      7
  DEL PEAK 26(22Q13.31) WILD-TYPE     75     56     50    112     34     15
                                 vv
clus                              CLUS_7
  DEL PEAK 26(22Q13.31) MUTATED        4
  DEL PEAK 26(22Q13.31) WILD-TYPE     27
D45V11, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(22Q13.31) MUTATED        2     21     43
  DEL PEAK 26(22Q13.31) WILD-TYPE      3    175    191
D45V12, multiclass
        clus
vv       DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE
  CLUS_1                             2                               3
  CLUS_2                            21                             175
  CLUS_3                            43                             191

Clustering(46) Variable = DEL PEAK 27(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(22Q13.31) MUTATED        4      1      1
  DEL PEAK 27(22Q13.31) WILD-TYPE      5      9      7
D46V1, multiclass
        clus
vv       DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  CLUS_1                             4                               5
  CLUS_2                             1                               9
  CLUS_3                             1                               7
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(22Q13.31) MUTATED        0      0      4      2
  DEL PEAK 27(22Q13.31) WILD-TYPE      7      6      6      2
D46V2, multiclass
        clus
vv       DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  CLUS_1                             0                               7
  CLUS_2                             0                               6
  CLUS_3                             4                               6
  CLUS_4                             2                               2
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(22Q13.31) MUTATED       33     31      4
  DEL PEAK 27(22Q13.31) WILD-TYPE    106     79    210
D46V3, multiclass
        clus
vv       DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  CLUS_1                            33                             106
  CLUS_2                            31                              79
  CLUS_3                             4                             210
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(22Q13.31) MUTATED       34     23      7      3
  DEL PEAK 27(22Q13.31) WILD-TYPE    165     42     46    138
D46V4, multiclass
        clus
vv       DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  CLUS_1                            34                             165
  CLUS_2                            23                              42
  CLUS_3                             7                              46
  CLUS_4                             3                             138
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(22Q13.31) MUTATED        4     21      8      6
  DEL PEAK 27(22Q13.31) WILD-TYPE     48     41     60     68
D46V5, multiclass
        clus
vv       DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  CLUS_1                             4                              48
  CLUS_2                            21                              41
  CLUS_3                             8                              60
  CLUS_4                             6                              68
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(22Q13.31) MUTATED        1     28     10
  DEL PEAK 27(22Q13.31) WILD-TYPE      7    101    109
D46V6, multiclass
        clus
vv       DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  CLUS_1                             1                               7
  CLUS_2                            28                             101
  CLUS_3                            10                             109
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(22Q13.31) MUTATED       14     31      2     13      5      2
  DEL PEAK 27(22Q13.31) WILD-TYPE    102     58     92    113      6     23
D46V7, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(22Q13.31) MUTATED       52      2     13
  DEL PEAK 27(22Q13.31) WILD-TYPE    172     78    144
D46V8, multiclass
        clus
vv       DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  CLUS_1                            52                             172
  CLUS_2                             2                              78
  CLUS_3                            13                             144
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(22Q13.31) MUTATED        7     20      8      5     15      8
  DEL PEAK 27(22Q13.31) WILD-TYPE     55     56     22     36    121     55
                                 vv
clus                              CLUS_7
  DEL PEAK 27(22Q13.31) MUTATED        3
  DEL PEAK 27(22Q13.31) WILD-TYPE     24
D46V9, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(22Q13.31) MUTATED       22      1     43
  DEL PEAK 27(22Q13.31) WILD-TYPE    172     15    182
D46V10, multiclass
        clus
vv       DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  CLUS_1                            22                             172
  CLUS_2                             1                              15
  CLUS_3                            43                             182
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(22Q13.31) MUTATED       12     21      5     12      5      7
  DEL PEAK 27(22Q13.31) WILD-TYPE     75     56     50    112     34     15
                                 vv
clus                              CLUS_7
  DEL PEAK 27(22Q13.31) MUTATED        4
  DEL PEAK 27(22Q13.31) WILD-TYPE     27
D46V11, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(22Q13.31) MUTATED        2     21     43
  DEL PEAK 27(22Q13.31) WILD-TYPE      3    175    191
D46V12, multiclass
        clus
vv       DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  CLUS_1                             2                               3
  CLUS_2                            21                             175
  CLUS_3                            43                             191

Clustering(47) Variable = DEL PEAK 28(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(XP21.1) MUTATED        1      2      2
  DEL PEAK 28(XP21.1) WILD-TYPE      8      8      6
D47V1, multiclass
        clus
vv       DEL PEAK 28(XP21.1) MUTATED DEL PEAK 28(XP21.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           2                             8
  CLUS_3                           2                             6
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(XP21.1) MUTATED        0      2      1      2
  DEL PEAK 28(XP21.1) WILD-TYPE      7      4      9      2
D47V2, multiclass
        clus
vv       DEL PEAK 28(XP21.1) MUTATED DEL PEAK 28(XP21.1) WILD-TYPE
  CLUS_1                           0                             7
  CLUS_2                           2                             4
  CLUS_3                           1                             9
  CLUS_4                           2                             2
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(XP21.1) MUTATED       44     11     38
  DEL PEAK 28(XP21.1) WILD-TYPE     95     99    176
D47V3, multiclass
        clus
vv       DEL PEAK 28(XP21.1) MUTATED DEL PEAK 28(XP21.1) WILD-TYPE
  CLUS_1                          44                            95
  CLUS_2                          11                            99
  CLUS_3                          38                           176
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(XP21.1) MUTATED       49      8      4     32
  DEL PEAK 28(XP21.1) WILD-TYPE    150     57     49    109
D47V4, multiclass
        clus
vv       DEL PEAK 28(XP21.1) MUTATED DEL PEAK 28(XP21.1) WILD-TYPE
  CLUS_1                          49                           150
  CLUS_2                           8                            57
  CLUS_3                           4                            49
  CLUS_4                          32                           109
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(XP21.1) MUTATED        7     20     17      9
  DEL PEAK 28(XP21.1) WILD-TYPE     45     42     51     65
D47V5, multiclass
        clus
vv       DEL PEAK 28(XP21.1) MUTATED DEL PEAK 28(XP21.1) WILD-TYPE
  CLUS_1                           7                            45
  CLUS_2                          20                            42
  CLUS_3                          17                            51
  CLUS_4                           9                            65
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(XP21.1) MUTATED        2     33     18
  DEL PEAK 28(XP21.1) WILD-TYPE      6     96    101
D47V6, multiclass
        clus
vv       DEL PEAK 28(XP21.1) MUTATED DEL PEAK 28(XP21.1) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                          33                            96
  CLUS_3                          18                           101
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(XP21.1) MUTATED       22     16     24     20      6      5
  DEL PEAK 28(XP21.1) WILD-TYPE     94     73     70    106      5     20
D47V7, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(XP21.1) MUTATED       50     22     21
  DEL PEAK 28(XP21.1) WILD-TYPE    174     58    136
D47V8, multiclass
        clus
vv       DEL PEAK 28(XP21.1) MUTATED DEL PEAK 28(XP21.1) WILD-TYPE
  CLUS_1                          50                           174
  CLUS_2                          22                            58
  CLUS_3                          21                           136
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(XP21.1) MUTATED       12     14     10     11     23     15
  DEL PEAK 28(XP21.1) WILD-TYPE     50     62     20     30    113     48
                               vv
clus                            CLUS_7
  DEL PEAK 28(XP21.1) MUTATED        1
  DEL PEAK 28(XP21.1) WILD-TYPE     26
D47V9, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(XP21.1) MUTATED       38      3     45
  DEL PEAK 28(XP21.1) WILD-TYPE    156     13    180
D47V10, multiclass
        clus
vv       DEL PEAK 28(XP21.1) MUTATED DEL PEAK 28(XP21.1) WILD-TYPE
  CLUS_1                          38                           156
  CLUS_2                           3                            13
  CLUS_3                          45                           180
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(XP21.1) MUTATED       15     14     15     18      9      9
  DEL PEAK 28(XP21.1) WILD-TYPE     72     63     40    106     30     13
                               vv
clus                            CLUS_7
  DEL PEAK 28(XP21.1) MUTATED        6
  DEL PEAK 28(XP21.1) WILD-TYPE     25
D47V11, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(XP21.1) MUTATED        3     31     52
  DEL PEAK 28(XP21.1) WILD-TYPE      2    165    182
D47V12, multiclass
        clus
vv       DEL PEAK 28(XP21.1) MUTATED DEL PEAK 28(XP21.1) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                          31                           165
  CLUS_3                          52                           182

Clustering(48) Variable = DEL PEAK 29(XQ21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(XQ21.1) MUTATED        1      2      2
  DEL PEAK 29(XQ21.1) WILD-TYPE      8      8      6
D48V1, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           2                             8
  CLUS_3                           2                             6
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(XQ21.1) MUTATED        0      1      1      3
  DEL PEAK 29(XQ21.1) WILD-TYPE      7      5      9      1
D48V2, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                           0                             7
  CLUS_2                           1                             5
  CLUS_3                           1                             9
  CLUS_4                           3                             1
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(XQ21.1) MUTATED       24     11     32
  DEL PEAK 29(XQ21.1) WILD-TYPE    115     99    182
D48V3, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          24                           115
  CLUS_2                          11                            99
  CLUS_3                          32                           182
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(XQ21.1) MUTATED       30      7      2     28
  DEL PEAK 29(XQ21.1) WILD-TYPE    169     58     51    113
D48V4, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          30                           169
  CLUS_2                           7                            58
  CLUS_3                           2                            51
  CLUS_4                          28                           113
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(XQ21.1) MUTATED        7     14      7      5
  DEL PEAK 29(XQ21.1) WILD-TYPE     45     48     61     69
D48V5, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                           7                            45
  CLUS_2                          14                            48
  CLUS_3                           7                            61
  CLUS_4                           5                            69
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(XQ21.1) MUTATED        2     22      9
  DEL PEAK 29(XQ21.1) WILD-TYPE      6    107    110
D48V6, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                          22                           107
  CLUS_3                           9                           110
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(XQ21.1) MUTATED       10     15     22     14      6      0
  DEL PEAK 29(XQ21.1) WILD-TYPE    106     74     72    112      5     25
D48V7, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(XQ21.1) MUTATED       32     20     15
  DEL PEAK 29(XQ21.1) WILD-TYPE    192     60    142
D48V8, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          32                           192
  CLUS_2                          20                            60
  CLUS_3                          15                           142
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(XQ21.1) MUTATED        5     10      8     12     15     10
  DEL PEAK 29(XQ21.1) WILD-TYPE     57     66     22     29    121     53
                               vv
clus                            CLUS_7
  DEL PEAK 29(XQ21.1) MUTATED        0
  DEL PEAK 29(XQ21.1) WILD-TYPE     27
D48V9, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(XQ21.1) MUTATED       28      2     30
  DEL PEAK 29(XQ21.1) WILD-TYPE    166     14    195
D48V10, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          28                           166
  CLUS_2                           2                            14
  CLUS_3                          30                           195
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(XQ21.1) MUTATED        8      9     15     12      7      7
  DEL PEAK 29(XQ21.1) WILD-TYPE     79     68     40    112     32     15
                               vv
clus                            CLUS_7
  DEL PEAK 29(XQ21.1) MUTATED        2
  DEL PEAK 29(XQ21.1) WILD-TYPE     29
D48V11, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(XQ21.1) MUTATED        1     24     35
  DEL PEAK 29(XQ21.1) WILD-TYPE      4    172    199
D48V12, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                          24                           172
  CLUS_3                          35                           199
> q(save="no")
