
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LIHC-TP/8278980/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/LIHC-TP/8142945/LIHC-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LIHC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LIHC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/LIHC-TP/8142945/LIHC-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LIHC-TP/8278980/transformed.cor.cli.txt"

nPatients in clinical file=157, in cluster file=199, common to both=149
[1]  56 149
[1] "AMP PEAK  1(1P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                           34                           115 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                           34                           115 
[1] "AMP PEAK  2(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                        110                          39 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                        110                          39 
[1] "AMP PEAK  3(1Q42.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                          104                            45 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                          104                            45 
[1] "AMP PEAK  4(2P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                           35                           114 
  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                           35                           114 
[1] "AMP PEAK  5(2Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                           31                           118 
  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                           31                           118 
[1] "AMP PEAK  6(3Q26.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                            31                            118 
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                            31                            118 
[1] "AMP PEAK  7(4Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE 
                           15                           134 
  AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE 
                           15                           134 
[1] "AMP PEAK  8(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE 
                            71                             78 
  AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE 
                            71                             78 
[1] "AMP PEAK  9(5Q35.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE 
                           54                            95 
  AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE 
                           54                            95 
[1] "AMP PEAK 10(6P25.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE 
                           62                            87 
  AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE 
                           62                            87 
[1] "AMP PEAK 11(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE 
                           62                            87 
  AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE 
                           62                            87 
[1] "AMP PEAK 12(6Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE 
                         44                         105 
  AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE 
                         44                         105 
[1] "AMP PEAK 13(6Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE 
                         31                         118 
  AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE 
                         31                         118 
[1] "AMP PEAK 14(7Q21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE 
                           56                            93 
  AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE 
                           56                            93 
[1] "AMP PEAK 15(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(7Q31.2) MUTATED AMP PEAK 15(7Q31.2) WILD-TYPE 
                           53                            96 
  AMP PEAK 15(7Q31.2) MUTATED AMP PEAK 15(7Q31.2) WILD-TYPE 
                           53                            96 
[1] "AMP PEAK 16(8Q11.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(8Q11.1) MUTATED AMP PEAK 16(8Q11.1) WILD-TYPE 
                           58                            91 
  AMP PEAK 16(8Q11.1) MUTATED AMP PEAK 16(8Q11.1) WILD-TYPE 
                           58                            91 
[1] "AMP PEAK 17(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE 
                            88                             61 
  AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE 
                            88                             61 
[1] "AMP PEAK 18(9Q34.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(9Q34.2) MUTATED AMP PEAK 18(9Q34.2) WILD-TYPE 
                           20                           129 
  AMP PEAK 18(9Q34.2) MUTATED AMP PEAK 18(9Q34.2) WILD-TYPE 
                           20                           129 
[1] "AMP PEAK 19(10P15.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(10P15.1) MUTATED AMP PEAK 19(10P15.1) WILD-TYPE 
                            30                            119 
  AMP PEAK 19(10P15.1) MUTATED AMP PEAK 19(10P15.1) WILD-TYPE 
                            30                            119 
[1] "AMP PEAK 20(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE 
                            28                            121 
  AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE 
                            28                            121 
[1] "AMP PEAK 21(13Q32.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(13Q32.3) MUTATED AMP PEAK 21(13Q32.3) WILD-TYPE 
                            23                            126 
  AMP PEAK 21(13Q32.3) MUTATED AMP PEAK 21(13Q32.3) WILD-TYPE 
                            23                            126 
[1] "AMP PEAK 22(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                            26                            123 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                            26                            123 
[1] "AMP PEAK 23(16Q12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(16Q12.1) MUTATED AMP PEAK 23(16Q12.1) WILD-TYPE 
                            13                            136 
  AMP PEAK 23(16Q12.1) MUTATED AMP PEAK 23(16Q12.1) WILD-TYPE 
                            13                            136 
[1] "AMP PEAK 24(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(17P11.2) MUTATED AMP PEAK 24(17P11.2) WILD-TYPE 
                            26                            123 
  AMP PEAK 24(17P11.2) MUTATED AMP PEAK 24(17P11.2) WILD-TYPE 
                            26                            123 
[1] "AMP PEAK 25(17Q25.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(17Q25.3) MUTATED AMP PEAK 25(17Q25.3) WILD-TYPE 
                            70                             79 
  AMP PEAK 25(17Q25.3) MUTATED AMP PEAK 25(17Q25.3) WILD-TYPE 
                            70                             79 
[1] "AMP PEAK 26(19Q13.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE 
                             41                             108 
  AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE 
                             41                             108 
[1] "AMP PEAK 27(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE 
                             50                              99 
  AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE 
                             50                              99 
[1] "AMP PEAK 28(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE 
                         38                         111 
  AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE 
                         38                         111 
[1] "DEL PEAK  1(1P36.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            71                             78 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            71                             78 
[1] "DEL PEAK  2(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                           15                           134 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                           15                           134 
[1] "DEL PEAK  3(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           28                           121 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           28                           121 
[1] "DEL PEAK  4(3P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE 
                         26                         123 
  DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE 
                         26                         123 
[1] "DEL PEAK  5(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                           26                           123 
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                           26                           123 
[1] "DEL PEAK  6(4Q24) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q24) MUTATED DEL PEAK  6(4Q24) WILD-TYPE 
                         64                          85 
  DEL PEAK  6(4Q24) MUTATED DEL PEAK  6(4Q24) WILD-TYPE 
                         64                          85 
[1] "DEL PEAK  7(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                           59                            90 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                           59                            90 
[1] "DEL PEAK  8(6Q16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE 
                           56                            93 
  DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE 
                           56                            93 
[1] "DEL PEAK  9(6Q27) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE 
                         58                          91 
  DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE 
                         58                          91 
[1] "DEL PEAK 10(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE 
                           97                            52 
  DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE 
                           97                            52 
[1] "DEL PEAK 11(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           57                            92 
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           57                            92 
[1] "DEL PEAK 12(9Q34.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(9Q34.2) MUTATED DEL PEAK 12(9Q34.2) WILD-TYPE 
                           51                            98 
  DEL PEAK 12(9Q34.2) MUTATED DEL PEAK 12(9Q34.2) WILD-TYPE 
                           51                            98 
[1] "DEL PEAK 13(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                             40                             109 
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                             40                             109 
[1] "DEL PEAK 14(10Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE 
                             39                             110 
  DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE 
                             39                             110 
[1] "DEL PEAK 15(11Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE 
                            26                            123 
  DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE 
                            26                            123 
[1] "DEL PEAK 16(11Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE 
                            30                            119 
  DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE 
                            30                            119 
[1] "DEL PEAK 17(12P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                            33                            116 
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                            33                            116 
[1] "DEL PEAK 18(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE 
                             24                             125 
  DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE 
                             24                             125 
[1] "DEL PEAK 19(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE 
                             47                             102 
  DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE 
                             47                             102 
[1] "DEL PEAK 20(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE 
                            68                             81 
  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE 
                            68                             81 
[1] "DEL PEAK 21(13Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE 
                            54                             95 
  DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE 
                            54                             95 
[1] "DEL PEAK 22(14Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE 
                            51                             98 
  DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE 
                            51                             98 
[1] "DEL PEAK 23(14Q32.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE 
                             52                              97 
  DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE 
                             52                              97 
[1] "DEL PEAK 24(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE 
                            62                             87 
  DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE 
                            62                             87 
[1] "DEL PEAK 25(17P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE 
                            79                             70 
  DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE 
                            79                             70 
[1] "DEL PEAK 26(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE 
                            32                            117 
  DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE 
                            32                            117 
[1] "DEL PEAK 27(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE 
                            11                            138 
  DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE 
                            11                            138 
[1] "DEL PEAK 28(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                             41                             108 
  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                             41                             108 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "RADIATIONTHERAPY"                      
[15] "HISTOLOGICALTYPE"                      
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "COMPLETENESS.OF.RESECTION"             
[18] "GLEASON_SCORE"                         
[19] "PSA_VALUE"                             
[20] "DAYS_TO_PSA"                           
[21] "BATCHNUMBER"                           

Input Data has 21 rows and 149 columns.

[1] "Batch" "21"   
[1] "Last Follow UP"
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
          NA          849           NA           NA           NA           NA 
TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 
          NA           NA           NA           NA           NA           NA 
TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 
          NA         1351          421            8          680          289 
TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 
         120           16            2           NA           12           NA 
TCGA-CC-5263 TCGA-CC-5264 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MB 
          NA           NA           NA            3            2            3 
TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 
           4         2425           NA           NA           NA         3437 
TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 
          NA           79           NA          662           NA           NA 
TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF 
        2415         2017          602         2301          204           NA 
TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EK TCGA-DD-A1EL 
          NA         1495          183          887           NA           NA 
TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 
          NA           NA           NA           NA           NA           NA 
TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 
          NA           NA           NA           NA           NA           NA 
TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF 
          NA           NA         1008          391         2232          428 
TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN 
         433          561          458           NA         1711           NA 
TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV 
        1869         2849           NA           NA           NA         2018 
TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F 
         334           NA          230          334           44          843 
TCGA-DD-A73G TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X 
        3071          408          386          482          423          406 
TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7PY TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-ED-A82E 
           7            6            6            6            6            6 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
         570          608          357          334           NA          303 
TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QQ TCGA-FV-A2QR 
         363           NA           NA          987           NA           NA 
TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 
           6           NA           NA            4            1           10 
TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V 
        1836           12           37         1553         1636          860 
TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH 
         935         1779           NA          655          673          780 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL 
         180          594          585          447          364          243 
TCGA-G3-A5SM TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C 
         133          236           NA          122           15          291 
TCGA-MI-A75E TCGA-MI-A75G TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
         155          433          265           NA          135 
Variable 1:'AGE':	nDistinctValues=50,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=62,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=80,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 17:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 19:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 20:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 21:'BATCH.NUMBER':	nDistinctValues=14,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                       "NEOPLASM.DISEASESTAGE"    
[3] "PATHOLOGY.T.STAGE"         "PATHOLOGY.N.STAGE"        
[5] "PATHOLOGY.M.STAGE"         "GENDER"                   
[7] "COMPLETENESS.OF.RESECTION"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 149 columns, 1 survival variables, and 7 non-survival variables.
AGE, nv=50, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=9, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
61 40 40  8 
[1] "table(vv)"
vv
T1 T2 T3 T4 
61 40 40  8 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
T1 T2 T3 T4 
61 40 40  8 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


T1 T2 T3 T4 
61 40 40  8 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P22.3) MUTATION ANALYSIS
D1V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  1(1P22.3) MUTATED   18 16
  AMP PEAK  1(1P22.3) WILD-TYPE 66 47
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                           34                           113 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                           16                            47 
$`AMP PEAK  1(1P22.3) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A216 TCGA-BC-A217 
       37.32        46.78        27.52         2.99        44.42        13.84 
TCGA-CC-5261 TCGA-CC-5263 TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A119 
        0.39         4.24         0.10        79.73        37.78         7.33 
TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A39X TCGA-DD-A39Y 
        2.60        21.76        49.15        29.16        55.69         5.62 
TCGA-DD-A3A1 TCGA-DD-A3A7 TCGA-DD-A3A9 TCGA-DD-A4NJ TCGA-DD-A73G TCGA-ED-A459 
        7.66        13.78        30.61        15.06       100.96        13.41 
TCGA-ED-A4XI TCGA-ED-A7PY TCGA-EP-A2KB TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25S 
       12.69         0.20        10.98         0.33        60.36         1.22 
TCGA-G3-A25W TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ 
       30.74        19.23        14.70        11.97 

$`AMP PEAK  1(1P22.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10X TCGA-BC-A10Y 
       48.99        27.91        10.13        27.52        25.32        23.34 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 
        1.12        69.57         5.03         0.26        22.36         9.50 
TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5262 TCGA-CC-A1HT 
        3.95         0.53         0.07         2.86         3.39         3.32 
TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MC TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 
        0.10         0.07         0.13        83.57        53.33       113.00 
TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC 
        0.46        51.29        90.71        79.40        66.31        19.79 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EI TCGA-DD-A1EK 
       75.65         6.71        12.95        45.11         6.02        18.35 
TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A2 TCGA-DD-A3A3 
       13.64        21.14        19.76        25.81        70.06        17.59 
TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4NB 
       20.12       102.74       107.11         0.36        33.14        12.85 
TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NL 
       73.38        14.07        14.24        18.44        39.78        56.25 
TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NS 
       29.56        61.45        93.67        12.26         0.30        80.75 
TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E 
       66.35        10.98         9.30         7.56        10.98         1.45 
TCGA-DD-A73F TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PX 
       27.72        15.85        13.91        13.35         0.23         0.20 
TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA 
        0.20         0.20         0.20        18.74        19.99        11.74 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B 
        0.62         9.96        11.93        22.85        14.40        32.45 
TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 
       19.10         0.20         8.12         6.38         0.13         0.03 
TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25X TCGA-G3-A25Y 
        0.39        51.06        53.79        28.27        58.49        14.86 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A5SL 
       21.53        22.13        25.64         5.92        19.53         7.99 
TCGA-G3-A5SM TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C 
        4.37         7.76         1.02         4.01         0.49         9.57 
TCGA-MI-A75E TCGA-MI-A75G TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
        5.10        14.24         8.71        58.88         4.44 

  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                         0.10                          0.03 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                       100.96                        113.00 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                        14.27                         14.07 
[1] "0.1 - 101.0 (14.3)" "0.0 - 113.0 (14.1)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-O8-A75V 
"AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-O8-A75V 
"AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-O8-A75V 
"AMP PEAK  1(1P22.3) WILD-TYPE" 
[1] "hr=" "1.2"
D1V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK  1(1P22.3) MUTATED        10        9         1          5
  AMP PEAK  1(1P22.3) WILD-TYPE      48       27         1         25
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK  1(1P22.3) MUTATED            2          1        1         0
  AMP PEAK  1(1P22.3) WILD-TYPE          2          4        0         1
                               vv
clus                            STAGE IVB
  AMP PEAK  1(1P22.3) MUTATED           1
  AMP PEAK  1(1P22.3) WILD-TYPE         1
D1V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  1(1P22.3) MUTATED   11 11 10  2
  AMP PEAK  1(1P22.3) WILD-TYPE 50 29 30  6
D1V4, multiclass
    clus
vv   AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  T1                          11                            50
  T2                          11                            29
  T3                          10                            30
  T4                           2                             6
D1V5, binary
                               cls
clus                             0  1
  AMP PEAK  1(1P22.3) MUTATED   19  1
  AMP PEAK  1(1P22.3) WILD-TYPE 78  2
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P22.3) MUTATED     19    1
  AMP PEAK  1(1P22.3) WILD-TYPE   78    2
   clus
vv  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  0                          19                            78
  1                           1                             2
                               vv
clus                            M0 M1 MX
  AMP PEAK  1(1P22.3) MUTATED   27  2  5
  AMP PEAK  1(1P22.3) WILD-TYPE 88  1 26
D1V6, multiclass
    clus
vv   AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  M0                          27                            88
  M1                           2                             1
  MX                           5                            26
D1V7, binary
                               cls
clus                             0  1
  AMP PEAK  1(1P22.3) MUTATED   13 21
  AMP PEAK  1(1P22.3) WILD-TYPE 45 70
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P22.3) MUTATED     13   21
  AMP PEAK  1(1P22.3) WILD-TYPE   45   70
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  FEMALE                          13                            45
  MALE                            21                            70
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  1(1P22.3) MUTATED   25  5  1  3
  AMP PEAK  1(1P22.3) WILD-TYPE 97  6  0  7
D1V8, multiclass
    clus
vv   AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  R0                          25                            97
  R1                           5                             6
  R2                           1                             0
  RX                           3                             7

Clustering(2) Variable = AMP PEAK  2(1Q22) MUTATION ANALYSIS
D2V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  2(1Q22) MUTATED   60 48
  AMP PEAK  2(1Q22) WILD-TYPE 24 15
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                        108                          39 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                         48                          15 
$`AMP PEAK  2(1Q22) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10Y 
       37.32        10.13        27.52        27.52         2.99        23.34 
TCGA-BC-A10Z TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG TCGA-BC-A5W4 
        1.12         5.03        44.42        13.84        22.36         9.50 
TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 
        3.95         0.53         0.07         0.39         3.39         4.24 
TCGA-CC-A1HT TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 
        3.32         0.07         0.10         0.13        79.73        37.78 
TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C 
       83.57       113.00         7.33         2.60         0.46        21.76 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EE TCGA-DD-A1EF 
       51.29        90.71        79.40        66.31         6.71        12.95 
TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A39V 
       45.11        49.15        29.16        18.35        13.64        21.14 
TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A3 
       55.69         5.62        19.76        25.81         7.66        17.59 
TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NI 
       13.78         0.36        30.61        14.07        14.24        18.44 
TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NR TCGA-DD-A4NV 
       15.06        39.78        29.56        61.45         0.30        66.35 
TCGA-DD-A73B TCGA-DD-A73D TCGA-DD-A73F TCGA-DD-A73G TCGA-ED-A459 TCGA-ED-A4XI 
        9.30        10.98        27.72       100.96        13.41        12.69 
TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PY TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-ED-A82E 
       13.35         0.23         0.20         0.20         0.20         0.20 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
       18.74        19.99        11.74        10.98         0.62         9.96 
TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I1 TCGA-FV-A3R3 
       11.93        14.40        32.45        19.10         8.12         0.13 
TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25W 
        0.03         0.33        60.36         1.22        53.79        30.74 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CJ TCGA-G3-A3CK 
       58.49        14.86        21.53        22.13        19.53        19.23 
TCGA-G3-A5SI TCGA-G3-A5SL TCGA-G3-A5SM TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-K7-A6G5 
       14.70         7.99         4.37         7.76         1.02         4.01 
TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75G TCGA-MI-A75I TCGA-O8-A75V 
        0.49         9.57         5.10        14.24         8.71         4.44 

$`AMP PEAK  2(1Q22) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10X TCGA-BC-A110 TCGA-BC-A3KF 
       48.99        27.91        46.78        25.32        69.57         0.26 
TCGA-CC-5260 TCGA-CC-A3M9 TCGA-DD-A116 TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EI 
        2.86         0.10        53.33        19.79        75.65         6.02 
TCGA-DD-A3A2 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A4NA TCGA-DD-A4NB 
       70.06        20.12       102.74       107.11        33.14        12.85 
TCGA-DD-A4ND TCGA-DD-A4NL TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NS TCGA-DD-A73A 
       73.38        56.25        93.67        12.26        80.75        10.98 
TCGA-DD-A73C TCGA-DD-A73E TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A7PX TCGA-ES-A2HS 
        7.56         1.45        15.85        13.91         0.20        22.85 
TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A3CH 
        0.20         6.38         0.39        51.06        28.27        25.64 
TCGA-G3-A3CI TCGA-G3-A5SJ TCGA-NI-A4U2 
        5.92        11.97        58.88 

  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                       0.03                        0.10 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                     113.00                      107.11 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                     13.525                      22.850 
[1] "0.0 - 113.0 (13.5)" "0.1 - 107.1 (22.9)"
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-5258                  TCGA-CC-5260 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-CC-5261                  TCGA-CC-5262 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A495                  TCGA-FV-A496 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-O8-A75V 
  "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-5258                  TCGA-CC-5260 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-CC-5261                  TCGA-CC-5262 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A495                  TCGA-FV-A496 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-O8-A75V 
  "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-5258                  TCGA-CC-5260 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-CC-5261                  TCGA-CC-5262 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A495                  TCGA-FV-A496 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-O8-A75V 
  "AMP PEAK  2(1Q22) MUTATED" 
[1] "hr=" "1.9"
D2V2, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  2(1Q22) MUTATED        39       31         1         20          4
  AMP PEAK  2(1Q22) WILD-TYPE      19        5         1         10          0
                             vv
clus                          STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  AMP PEAK  2(1Q22) MUTATED            3        1         1         2
  AMP PEAK  2(1Q22) WILD-TYPE          2        0         0         0
D2V3, multiclass
                             vv
clus                          T1 T2 T3 T4
  AMP PEAK  2(1Q22) MUTATED   41 34 28  7
  AMP PEAK  2(1Q22) WILD-TYPE 20  6 12  1
D2V4, multiclass
    clus
vv   AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  T1                        41                          20
  T2                        34                           6
  T3                        28                          12
  T4                         7                           1
D2V5, binary
                             cls
clus                           0  1
  AMP PEAK  2(1Q22) MUTATED   70  2
  AMP PEAK  2(1Q22) WILD-TYPE 27  1
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q22) MUTATED     70    2
  AMP PEAK  2(1Q22) WILD-TYPE   27    1
   clus
vv  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  0                        70                          27
  1                         2                           1
                             vv
clus                          M0 M1 MX
  AMP PEAK  2(1Q22) MUTATED   83  3 24
  AMP PEAK  2(1Q22) WILD-TYPE 32  0  7
D2V6, multiclass
    clus
vv   AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  M0                        83                          32
  M1                         3                           0
  MX                        24                           7
D2V7, binary
                             cls
clus                           0  1
  AMP PEAK  2(1Q22) MUTATED   41 69
  AMP PEAK  2(1Q22) WILD-TYPE 17 22
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q22) MUTATED     41   69
  AMP PEAK  2(1Q22) WILD-TYPE   17   22
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  FEMALE                        41                          17
  MALE                          69                          22
                             vv
clus                          R0 R1 R2 RX
  AMP PEAK  2(1Q22) MUTATED   86  9  1  9
  AMP PEAK  2(1Q22) WILD-TYPE 36  2  0  1
D2V8, multiclass
    clus
vv   AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  R0                        86                          36
  R1                         9                           2
  R2                         1                           0
  RX                         9                           1

Clustering(3) Variable = AMP PEAK  3(1Q42.3) MUTATION ANALYSIS
D3V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  3(1Q42.3) MUTATED   59 43
  AMP PEAK  3(1Q42.3) WILD-TYPE 25 20
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                          102                            45 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           43                            20 
$`AMP PEAK  3(1Q42.3) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10Y TCGA-BC-A112 
       37.32        10.13        27.52        27.52        23.34         5.03 
TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-BC-A69H TCGA-BC-A69I 
       44.42        13.84        22.36         9.50         3.95         0.53 
TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MC 
        0.39         3.39         4.24         0.10         0.07         0.13 
TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B 
       79.73        37.78       113.00         7.33         2.60         0.46 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EG 
       51.29        90.71        79.40         6.71        12.95        45.11 
TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39Y 
       49.15        29.16        18.35        13.64        21.14         5.62 
TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A3 TCGA-DD-A3A5 TCGA-DD-A3A7 
       19.76        25.81         7.66        17.59       102.74        13.78 
TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4NF TCGA-DD-A4NH 
        0.36        30.61        33.14        12.85        14.07        14.24 
TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NQ 
       18.44        15.06        39.78        29.56        61.45        12.26 
TCGA-DD-A4NR TCGA-DD-A4NV TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F TCGA-DD-A73G 
        0.30        66.35        10.98         1.45        27.72       100.96 
TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PY 
       13.41        12.69        15.85        13.35         0.23         0.20 
TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA 
        0.20         0.20         0.20        18.74        19.99        11.74 
TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B 
       10.98         0.62         9.96        11.93        14.40        32.45 
TCGA-FV-A2QR TCGA-FV-A3I1 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-G3-A25S 
       19.10         8.12         0.13         0.03         0.33         1.22 
TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CJ 
       30.74        58.49        14.86        21.53        22.13        19.53 
TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SL TCGA-G3-A5SM TCGA-G3-A6UC TCGA-K7-A6G5 
       19.23        14.70         7.99         4.37         7.76         4.01 
TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75G TCGA-MI-A75I TCGA-O8-A75V 
        0.49         9.57         5.10        14.24         8.71         4.44 

$`AMP PEAK  3(1Q42.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z 
       48.99        27.91        46.78         2.99        25.32         1.12 
TCGA-BC-A110 TCGA-BC-A3KF TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-A1HT TCGA-CC-A3MB 
       69.57         0.26         0.07         2.86         3.32         0.10 
TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A11C TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED 
       83.57        53.33        21.76        66.31        19.79        75.65 
TCGA-DD-A1EI TCGA-DD-A39X TCGA-DD-A3A2 TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A4ND 
        6.02        55.69        70.06        20.12       107.11        73.38 
TCGA-DD-A4NL TCGA-DD-A4NP TCGA-DD-A4NS TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C 
       56.25        93.67        80.75        10.98         9.30         7.56 
TCGA-ED-A627 TCGA-ED-A7PX TCGA-ES-A2HS TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A4ZP 
       13.91         0.20        22.85         0.20         6.38        60.36 
TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A3CH TCGA-G3-A3CI 
        0.39        51.06        53.79        28.27        25.64         5.92 
TCGA-G3-A5SJ TCGA-GJ-A6C0 TCGA-NI-A4U2 
       11.97         1.02        58.88 

  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                         0.03                          0.07 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                       113.00                        107.11 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                       13.525                        22.850 
[1] "0.0 - 113.0 (13.5)" "0.1 - 107.1 (22.9)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A495                    TCGA-FV-A496 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-O8-A75V 
  "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A495                    TCGA-FV-A496 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-O8-A75V 
  "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A495                    TCGA-FV-A496 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-O8-A75V 
  "AMP PEAK  3(1Q42.3) MUTATED" 
[1] "hr=" "1.5"
D3V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK  3(1Q42.3) MUTATED        35       31         2         17
  AMP PEAK  3(1Q42.3) WILD-TYPE      23        5         0         13
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK  3(1Q42.3) MUTATED            4          4        1         1
  AMP PEAK  3(1Q42.3) WILD-TYPE          0          1        0         0
                               vv
clus                            STAGE IVB
  AMP PEAK  3(1Q42.3) MUTATED           2
  AMP PEAK  3(1Q42.3) WILD-TYPE         0
D3V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  3(1Q42.3) MUTATED   37 35 26  6
  AMP PEAK  3(1Q42.3) WILD-TYPE 24  5 14  2
D3V4, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  T1                          37                            24
  T2                          35                             5
  T3                          26                            14
  T4                           6                             2
D3V5, binary
                               cls
clus                             0  1
  AMP PEAK  3(1Q42.3) MUTATED   67  3
  AMP PEAK  3(1Q42.3) WILD-TYPE 30  0
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) MUTATED     67    3
  AMP PEAK  3(1Q42.3) WILD-TYPE   30    0
   clus
vv  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  0                          67                            30
  1                           3                             0
                               vv
clus                            M0 M1 MX
  AMP PEAK  3(1Q42.3) MUTATED   80  3 21
  AMP PEAK  3(1Q42.3) WILD-TYPE 35  0 10
D3V6, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  M0                          80                            35
  M1                           3                             0
  MX                          21                            10
D3V7, binary
                               cls
clus                             0  1
  AMP PEAK  3(1Q42.3) MUTATED   38 66
  AMP PEAK  3(1Q42.3) WILD-TYPE 20 25
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) MUTATED     38   66
  AMP PEAK  3(1Q42.3) WILD-TYPE   20   25
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  FEMALE                          38                            20
  MALE                            66                            25
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  3(1Q42.3) MUTATED   86  7  1  6
  AMP PEAK  3(1Q42.3) WILD-TYPE 36  4  0  4
D3V8, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  R0                          86                            36
  R1                           7                             4
  R2                           1                             0
  RX                           6                             4

Clustering(4) Variable = AMP PEAK  4(2P24.1) MUTATION ANALYSIS
D4V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  4(2P24.1) MUTATED   16 18
  AMP PEAK  4(2P24.1) WILD-TYPE 68 45
  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                           34                           113 
  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                           18                            45 
$`AMP PEAK  4(2P24.1) MUTATED`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10Y TCGA-BC-A112 
       48.99        37.32        10.13        27.52        23.34         5.03 
TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5263 TCGA-CC-A3M9 TCGA-DD-A113 TCGA-DD-A115 
       22.36         9.50         4.24         0.10        79.73        83.57 
TCGA-DD-A11A TCGA-DD-A1E9 TCGA-DD-A1EG TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39X 
        2.60        90.71        45.11        29.16        13.64        55.69 
TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NO TCGA-DD-A73B TCGA-DD-A73D TCGA-DD-A73E 
       30.61        33.14        61.45         9.30        10.98         1.45 
TCGA-DD-A73F TCGA-ED-A7PY TCGA-ED-A82E TCGA-EP-A2KA TCGA-ES-A2HS TCGA-G3-A25T 
       27.72         0.20         0.20        11.74        22.85        51.06 
TCGA-G3-A25W TCGA-G3-A25Z TCGA-GJ-A6C0 TCGA-LG-A6GG 
       30.74        21.53         1.02         0.49 

$`AMP PEAK  4(2P24.1) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z 
       27.91        46.78        27.52         2.99        25.32         1.12 
TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A69H TCGA-BC-A69I 
       69.57        44.42        13.84         0.26         3.95         0.53 
TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-A1HT TCGA-CC-A3MA 
        0.07         2.86         0.39         3.39         3.32         0.07 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 
        0.10         0.13        37.78        53.33       113.00         7.33 
TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC 
        0.46        21.76        51.29        79.40        66.31        19.79 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EK 
       75.65         6.71        12.95        49.15         6.02        18.35 
TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 
       21.14         5.62        19.76        25.81         7.66        70.06 
TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 
       17.59        20.12       102.74       107.11        13.78         0.36 
TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ 
       12.85        73.38        14.07        14.24        18.44        15.06 
TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NR 
       39.78        56.25        29.56        93.67        12.26         0.30 
TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73C TCGA-DD-A73G TCGA-ED-A459 
       80.75        66.35        10.98         7.56       100.96        13.41 
TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PX 
       12.69        15.85        13.91        13.35         0.23         0.20 
TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC 
        0.20         0.20        18.74        19.99        10.98         0.62 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 
        9.96        11.93        14.40        32.45        19.10         0.20 
TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP 
        8.12         6.38         0.13         0.03         0.33        60.36 
TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25X TCGA-G3-A25Y 
        0.39         1.22        53.79        28.27        58.49        14.86 
TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI 
       22.13        25.64         5.92        19.53        19.23        14.70 
TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM TCGA-G3-A6UC TCGA-K7-A6G5 TCGA-MI-A75C 
       11.97         7.99         4.37         7.76         4.01         9.57 
TCGA-MI-A75E TCGA-MI-A75G TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
        5.10        14.24         8.71        58.88         4.44 

  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                         0.10                          0.03 
  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                        90.71                        113.00 
  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                       22.605                        13.840 
[1] "0.1 - 90.7 (22.6)"  "0.0 - 113.0 (13.8)"
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-O8-A75V 
"AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-O8-A75V 
"AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-O8-A75V 
"AMP PEAK  4(2P24.1) WILD-TYPE" 
[1] "hr=" "1.2"
D4V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK  4(2P24.1) MUTATED        10        7         0          9
  AMP PEAK  4(2P24.1) WILD-TYPE      48       29         2         21
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK  4(2P24.1) MUTATED            1          2        0         0
  AMP PEAK  4(2P24.1) WILD-TYPE          3          3        1         1
                               vv
clus                            STAGE IVB
  AMP PEAK  4(2P24.1) MUTATED           1
  AMP PEAK  4(2P24.1) WILD-TYPE         1
D4V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  4(2P24.1) MUTATED   11  9 12  3
  AMP PEAK  4(2P24.1) WILD-TYPE 50 31 28  5
D4V4, multiclass
    clus
vv   AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  T1                          11                            50
  T2                           9                            31
  T3                          12                            28
  T4                           3                             5
D4V5, binary
                               cls
clus                             0  1
  AMP PEAK  4(2P24.1) MUTATED   20  2
  AMP PEAK  4(2P24.1) WILD-TYPE 77  1
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(2P24.1) MUTATED     20    2
  AMP PEAK  4(2P24.1) WILD-TYPE   77    1
   clus
vv  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  0                          20                            77
  1                           2                             1
                               vv
clus                            M0 M1 MX
  AMP PEAK  4(2P24.1) MUTATED   25  1  9
  AMP PEAK  4(2P24.1) WILD-TYPE 90  2 22
D4V6, multiclass
    clus
vv   AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  M0                          25                            90
  M1                           1                             2
  MX                           9                            22
D4V7, binary
                               cls
clus                             0  1
  AMP PEAK  4(2P24.1) MUTATED   19 16
  AMP PEAK  4(2P24.1) WILD-TYPE 39 75
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(2P24.1) MUTATED     19   16
  AMP PEAK  4(2P24.1) WILD-TYPE   39   75
        clus
vv       AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  FEMALE                          19                            39
  MALE                            16                            75
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  4(2P24.1) MUTATED   28  4  0  3
  AMP PEAK  4(2P24.1) WILD-TYPE 94  7  1  7
D4V8, multiclass
    clus
vv   AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  R0                          28                            94
  R1                           4                             7
  R2                           0                             1
  RX                           3                             7

Clustering(5) Variable = AMP PEAK  5(2Q31.2) MUTATION ANALYSIS
D5V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  5(2Q31.2) MUTATED   14 17
  AMP PEAK  5(2Q31.2) WILD-TYPE 70 46
  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                           31                           116 
  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                           17                            46 
$`AMP PEAK  5(2Q31.2) MUTATED`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A3KG TCGA-CC-5263 
       48.99        37.32        10.13        27.52        22.36         4.24 
TCGA-DD-A113 TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39X 
       79.73        21.76        90.71        29.16        13.64        55.69 
TCGA-DD-A3A0 TCGA-DD-A3A7 TCGA-DD-A3A9 TCGA-DD-A4NQ TCGA-DD-A73D TCGA-DD-A73E 
       25.81        13.78        30.61        12.26        10.98         1.45 
TCGA-ED-A7PY TCGA-ED-A82E TCGA-EP-A2KA TCGA-ES-A2HS TCGA-FV-A3I1 TCGA-FV-A495 
        0.20         0.20        11.74        22.85         8.12         0.03 
TCGA-FV-A496 TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25W TCGA-G3-A25Z TCGA-G3-A5SM 
        0.33         1.22        51.06        30.74        21.53         4.37 
TCGA-LG-A6GG 
        0.49 

$`AMP PEAK  5(2Q31.2) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y 
       27.91        46.78        27.52         2.99        25.32        23.34 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF 
        1.12        69.57         5.03        44.42        13.84         0.26 
TCGA-BC-A5W4 TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 
        9.50         3.95         0.53         0.07         2.86         0.39 
TCGA-CC-5262 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC 
        3.39         3.32         0.10         0.07         0.10         0.13 
TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A 
       37.78        83.57        53.33       113.00         7.33         2.60 
TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED 
        0.46        51.29        79.40        66.31        19.79        75.65 
TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EK 
        6.71        12.95        45.11        49.15         6.02        18.35 
TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 
       21.14         5.62        19.76         7.66        70.06        17.59 
TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4NB 
       20.12       102.74       107.11         0.36        33.14        12.85 
TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK 
       73.38        14.07        14.24        18.44        15.06        39.78 
TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NR TCGA-DD-A4NS 
       56.25        29.56        61.45        93.67         0.30        80.75 
TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73F TCGA-DD-A73G 
       66.35        10.98         9.30         7.56        27.72       100.96 
TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A66Y 
       13.41        12.69        15.85        13.91        13.35         0.23 
TCGA-ED-A7PX TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KB 
        0.20         0.20         0.20        18.74        19.99        10.98 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR 
        0.62         9.96        11.93        14.40        32.45        19.10 
TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25U 
        0.20         6.38         0.13        60.36         0.39        53.79 
TCGA-G3-A25V TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
       28.27        58.49        14.86        22.13        25.64         5.92 
TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A6UC 
       19.53        19.23        14.70        11.97         7.99         7.76 
TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75G TCGA-MI-A75I 
        1.02         4.01         9.57         5.10        14.24         8.71 
TCGA-NI-A4U2 TCGA-O8-A75V 
       58.88         4.44 

  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                         0.03                          0.07 
  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                        90.71                        113.00 
  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                       13.780                        14.155 
[1] "0.0 - 90.7 (13.8)"  "0.1 - 113.0 (14.2)"
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  5(2Q31.2) MUTATED"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
  "AMP PEAK  5(2Q31.2) MUTATED"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
  "AMP PEAK  5(2Q31.2) MUTATED"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  5(2Q31.2) MUTATED"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-O8-A75V 
"AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  5(2Q31.2) MUTATED"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
  "AMP PEAK  5(2Q31.2) MUTATED"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
  "AMP PEAK  5(2Q31.2) MUTATED"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  5(2Q31.2) MUTATED"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-O8-A75V 
"AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  5(2Q31.2) MUTATED"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
  "AMP PEAK  5(2Q31.2) MUTATED"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
  "AMP PEAK  5(2Q31.2) MUTATED"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  5(2Q31.2) MUTATED"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-O8-A75V 
"AMP PEAK  5(2Q31.2) WILD-TYPE" 
[1] "hr=" "1.5"
D5V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK  5(2Q31.2) MUTATED         9       10         0          5
  AMP PEAK  5(2Q31.2) WILD-TYPE      49       26         2         25
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK  5(2Q31.2) MUTATED            2          1        0         0
  AMP PEAK  5(2Q31.2) WILD-TYPE          2          4        1         1
                               vv
clus                            STAGE IVB
  AMP PEAK  5(2Q31.2) MUTATED           1
  AMP PEAK  5(2Q31.2) WILD-TYPE         1
D5V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  5(2Q31.2) MUTATED   10 11  8  2
  AMP PEAK  5(2Q31.2) WILD-TYPE 51 29 32  6
D5V4, multiclass
    clus
vv   AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  T1                          10                            51
  T2                          11                            29
  T3                           8                            32
  T4                           2                             6
D5V5, binary
                               cls
clus                             0  1
  AMP PEAK  5(2Q31.2) MUTATED   17  1
  AMP PEAK  5(2Q31.2) WILD-TYPE 80  2
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(2Q31.2) MUTATED     17    1
  AMP PEAK  5(2Q31.2) WILD-TYPE   80    2
   clus
vv  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  0                          17                            80
  1                           1                             2
                               vv
clus                            M0 M1 MX
  AMP PEAK  5(2Q31.2) MUTATED   23  1  7
  AMP PEAK  5(2Q31.2) WILD-TYPE 92  2 24
D5V6, multiclass
    clus
vv   AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  M0                          23                            92
  M1                           1                             2
  MX                           7                            24
D5V7, binary
                               cls
clus                             0  1
  AMP PEAK  5(2Q31.2) MUTATED   18 13
  AMP PEAK  5(2Q31.2) WILD-TYPE 40 78
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(2Q31.2) MUTATED     18   13
  AMP PEAK  5(2Q31.2) WILD-TYPE   40   78
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  FEMALE                          18                            40
  MALE                            13                            78
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  5(2Q31.2) MUTATED   25  4  0  2
  AMP PEAK  5(2Q31.2) WILD-TYPE 97  7  1  8
D5V8, multiclass
    clus
vv   AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  R0                          25                            97
  R1                           4                             7
  R2                           0                             1
  RX                           2                             8

Clustering(6) Variable = AMP PEAK  6(3Q26.31) MUTATION ANALYSIS
D6V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  6(3Q26.31) MUTATED   16 15
  AMP PEAK  6(3Q26.31) WILD-TYPE 68 48
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                            31                            116 
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                            15                             48 
$`AMP PEAK  6(3Q26.31) MUTATED`
TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A217 TCGA-BC-A3KG 
       10.13        27.52        23.34         1.12        13.84        22.36 
TCGA-BC-A5W4 TCGA-BC-A69H TCGA-CC-A3MA TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A11C 
        9.50         3.95         0.07        37.78        83.57        21.76 
TCGA-DD-A1EF TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39Y TCGA-DD-A3A5 TCGA-DD-A4NI 
       12.95        29.16        13.64         5.62       102.74        18.44 
TCGA-DD-A4NV TCGA-DD-A73E TCGA-DD-A73G TCGA-ED-A7PX TCGA-ED-A7PZ TCGA-ED-A82E 
       66.35         1.45       100.96         0.20         0.20         0.20 
TCGA-EP-A2KA TCGA-ES-A2HS TCGA-FV-A3R2 TCGA-FV-A495 TCGA-G3-A25X TCGA-GJ-A6C0 
       11.74        22.85         6.38         0.03        58.49         1.02 
TCGA-MI-A75G 
       14.24 

$`AMP PEAK  6(3Q26.31) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W 
       48.99        27.91        37.32        46.78        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A69I 
       25.32        69.57         5.03        44.42         0.26         0.53 
TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT 
        0.07         2.86         0.39         3.39         4.24         3.32 
TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A116 TCGA-DD-A118 
        0.10         0.10         0.13        79.73        53.33       113.00 
TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA 
        7.33         2.60         0.46        51.29        90.71        79.40 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EG TCGA-DD-A1EH 
       66.31        19.79        75.65         6.71        45.11        49.15 
TCGA-DD-A1EI TCGA-DD-A1EK TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Z TCGA-DD-A3A0 
        6.02        18.35        21.14        55.69        19.76        25.81 
TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A3A7 
        7.66        70.06        17.59        20.12       107.11        13.78 
TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF 
        0.36        30.61        33.14        12.85        73.38        14.07 
TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO 
       14.24        15.06        39.78        56.25        29.56        61.45 
TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A73A TCGA-DD-A73B 
       93.67        12.26         0.30        80.75        10.98         9.30 
TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73F TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A5KG 
        7.56        10.98        27.72        13.41        12.69        15.85 
TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PY TCGA-ED-A7XP TCGA-EP-A12J 
       13.91        13.35         0.23         0.20         0.20        18.74 
TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT 
       19.99        10.98         0.62         9.96        11.93        14.40 
TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R3 TCGA-FV-A496 
       32.45        19.10         0.20         8.12         0.13         0.33 
TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V 
       60.36         0.39         1.22        51.06        53.79        28.27 
TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
       30.74        14.86        21.53        22.13        25.64         5.92 
TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM 
       19.53        19.23        14.70        11.97         7.99         4.37 
TCGA-G3-A6UC TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75I 
        7.76         4.01         0.49         9.57         5.10         8.71 
TCGA-NI-A4U2 TCGA-O8-A75V 
       58.88         4.44 

  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                          0.03                           0.07 
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                        102.74                         113.00 
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                         13.64                          14.32 
[1] "0.0 - 102.7 (13.6)" "0.1 - 113.0 (14.3)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "AMP PEAK  6(3Q26.31) MUTATED"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-O8-A75V 
"AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "AMP PEAK  6(3Q26.31) MUTATED"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-O8-A75V 
"AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "AMP PEAK  6(3Q26.31) MUTATED"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-O8-A75V 
"AMP PEAK  6(3Q26.31) WILD-TYPE" 
[1] "hr=" "1.2"
D6V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK  6(3Q26.31) MUTATED         8       12         1          6
  AMP PEAK  6(3Q26.31) WILD-TYPE      50       24         1         24
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK  6(3Q26.31) MUTATED            0          1        0         0
  AMP PEAK  6(3Q26.31) WILD-TYPE          4          4        1         1
                                vv
clus                             STAGE IVB
  AMP PEAK  6(3Q26.31) MUTATED           0
  AMP PEAK  6(3Q26.31) WILD-TYPE         2
D6V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK  6(3Q26.31) MUTATED    9 12  8  2
  AMP PEAK  6(3Q26.31) WILD-TYPE 52 28 32  6
D6V4, multiclass
    clus
vv   AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  T1                            9                             52
  T2                           12                             28
  T3                            8                             32
  T4                            2                              6
D6V5, binary
                                cls
clus                              0  1
  AMP PEAK  6(3Q26.31) MUTATED   14  1
  AMP PEAK  6(3Q26.31) WILD-TYPE 83  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(3Q26.31) MUTATED     14    1
  AMP PEAK  6(3Q26.31) WILD-TYPE   83    2
   clus
vv  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  0                           14                             83
  1                            1                              2
                                vv
clus                             M0 M1 MX
  AMP PEAK  6(3Q26.31) MUTATED   23  0  8
  AMP PEAK  6(3Q26.31) WILD-TYPE 92  3 23
D6V6, multiclass
    clus
vv   AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  M0                           23                             92
  M1                            0                              3
  MX                            8                             23
D6V7, binary
                                cls
clus                              0  1
  AMP PEAK  6(3Q26.31) MUTATED   13 18
  AMP PEAK  6(3Q26.31) WILD-TYPE 45 73
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(3Q26.31) MUTATED     13   18
  AMP PEAK  6(3Q26.31) WILD-TYPE   45   73
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  FEMALE                           13                             45
  MALE                             18                             73
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK  6(3Q26.31) MUTATED   27  2  0  2
  AMP PEAK  6(3Q26.31) WILD-TYPE 95  9  1  8
D6V8, multiclass
    clus
vv   AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  R0                           27                             95
  R1                            2                              9
  R2                            0                              1
  RX                            2                              8

Clustering(7) Variable = AMP PEAK  7(4Q13.3) MUTATION ANALYSIS
D7V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  7(4Q13.3) MUTATED   10  5
  AMP PEAK  7(4Q13.3) WILD-TYPE 74 58
  AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE 
                           15                           132 
  AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE 
                            5                            58 
$`AMP PEAK  7(4Q13.3) MUTATED`
TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A217 TCGA-CC-5258 TCGA-CC-5261 TCGA-DD-A113 
       10.13        27.52        13.84         0.07         0.39        79.73 
TCGA-DD-A11C TCGA-DD-A1EC TCGA-DD-A1EH TCGA-DD-A73F TCGA-ED-A82E TCGA-EP-A12J 
       21.76        19.79        49.15        27.72         0.20        18.74 
TCGA-EP-A2KA TCGA-G3-A3CG TCGA-GJ-A6C0 
       11.74        22.13         1.02 

$`AMP PEAK  7(4Q13.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W 
       48.99        27.91        37.32        46.78        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
       25.32        23.34         1.12        69.57         5.03        44.42 
TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5260 
        0.26        22.36         9.50         3.95         0.53         2.86 
TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MB 
        3.39         4.24         3.32         0.10         0.07         0.10 
TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 
        0.13        37.78        83.57        53.33       113.00         7.33 
TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB 
        2.60         0.46        51.29        90.71        79.40        66.31 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EI TCGA-DD-A1EJ 
       75.65         6.71        12.95        45.11         6.02        29.16 
TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z 
       18.35        13.64        21.14        55.69         5.62        19.76 
TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 
       25.81         7.66        70.06        17.59        20.12       102.74 
TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NB 
      107.11        13.78         0.36        30.61        33.14        12.85 
TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK 
       73.38        14.07        14.24        18.44        15.06        39.78 
TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NR 
       56.25        29.56        61.45        93.67        12.26         0.30 
TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D 
       80.75        66.35        10.98         9.30         7.56        10.98 
TCGA-DD-A73E TCGA-DD-A73G TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 
        1.45       100.96        13.41        12.69        15.85        13.91 
TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7PY TCGA-ED-A7PZ TCGA-ED-A7XP 
       13.35         0.23         0.20         0.20         0.20         0.20 
TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS 
       19.99        10.98         0.62         9.96        11.93        22.85 
TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R2 
       14.40        32.45        19.10         0.20         8.12         6.38 
TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25S 
        0.13         0.03         0.33        60.36         0.39         1.22 
TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y 
       51.06        53.79        28.27        30.74        58.49        14.86 
TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI 
       21.53        25.64         5.92        19.53        19.23        14.70 
TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM TCGA-G3-A6UC TCGA-K7-A6G5 TCGA-LG-A6GG 
       11.97         7.99         4.37         7.76         4.01         0.49 
TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75G TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
        9.57         5.10        14.24         8.71        58.88         4.44 

  AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE 
                         0.07                          0.03 
  AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE 
                        79.73                        113.00 
  AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE 
                        18.74                         13.99 
[1] "0.1 - 79.7 (18.7)"  "0.0 - 113.0 (14.0)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK  7(4Q13.3) MUTATED"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-O8-A75V 
"AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK  7(4Q13.3) MUTATED"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-O8-A75V 
"AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK  7(4Q13.3) MUTATED"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-O8-A75V 
"AMP PEAK  7(4Q13.3) WILD-TYPE" 
[1] "hr=" "1.1"
D7V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK  7(4Q13.3) MUTATED         5        5         1          2
  AMP PEAK  7(4Q13.3) WILD-TYPE      53       31         1         28
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK  7(4Q13.3) MUTATED            0          0        0         0
  AMP PEAK  7(4Q13.3) WILD-TYPE          4          5        1         1
                               vv
clus                            STAGE IVB
  AMP PEAK  7(4Q13.3) MUTATED           0
  AMP PEAK  7(4Q13.3) WILD-TYPE         2
D7V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  7(4Q13.3) MUTATED    5  5  4  1
  AMP PEAK  7(4Q13.3) WILD-TYPE 56 35 36  7
D7V4, multiclass
    clus
vv   AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE
  T1                           5                            56
  T2                           5                            35
  T3                           4                            36
  T4                           1                             7
D7V5, binary
                               cls
clus                             0  1
  AMP PEAK  7(4Q13.3) MUTATED    9  0
  AMP PEAK  7(4Q13.3) WILD-TYPE 88  3
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(4Q13.3) MUTATED      9    0
  AMP PEAK  7(4Q13.3) WILD-TYPE   88    3
   clus
vv  AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE
  0                           9                            88
  1                           0                             3
                               vv
clus                             M0  M1  MX
  AMP PEAK  7(4Q13.3) MUTATED    10   0   5
  AMP PEAK  7(4Q13.3) WILD-TYPE 105   3  26
D7V6, multiclass
    clus
vv   AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE
  M0                          10                           105
  M1                           0                             3
  MX                           5                            26
D7V7, binary
                               cls
clus                             0  1
  AMP PEAK  7(4Q13.3) MUTATED    8  7
  AMP PEAK  7(4Q13.3) WILD-TYPE 50 84
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(4Q13.3) MUTATED      8    7
  AMP PEAK  7(4Q13.3) WILD-TYPE   50   84
        clus
vv       AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE
  FEMALE                           8                            50
  MALE                             7                            84
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK  7(4Q13.3) MUTATED     9   2   0   4
  AMP PEAK  7(4Q13.3) WILD-TYPE 113   9   1   6
D7V8, multiclass
    clus
vv   AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE
  R0                           9                           113
  R1                           2                             9
  R2                           0                             1
  RX                           4                             6

Clustering(8) Variable = AMP PEAK  8(5P15.33) MUTATION ANALYSIS
D8V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  8(5P15.33) MUTATED   39 30
  AMP PEAK  8(5P15.33) WILD-TYPE 45 33
  AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE 
                            69                             78 
  AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE 
                            30                             33 
$`AMP PEAK  8(5P15.33) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10W TCGA-BC-A10Z TCGA-BC-A112 TCGA-BC-A216 
       37.32        10.13         2.99         1.12         5.03        44.42 
TCGA-BC-A217 TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3M9 
       13.84        22.36         0.07         4.24         3.32         0.10 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A11A 
        0.10         0.13        83.57        53.33       113.00         2.60 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EI 
       51.29        90.71        79.40         6.71        12.95         6.02 
TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A1 TCGA-DD-A3A3 
       13.64        21.14        55.69         5.62         7.66        17.59 
TCGA-DD-A3A5 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A4ND TCGA-DD-A4NJ TCGA-DD-A4NK 
      102.74        13.78         0.36        73.38        15.06        39.78 
TCGA-DD-A4NO TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73C TCGA-DD-A73G TCGA-ED-A459 
       61.45        66.35        10.98         7.56       100.96        13.41 
TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7XP TCGA-ED-A82E TCGA-EP-A2KB TCGA-EP-A2KC 
       13.35         0.23         0.20         0.20        10.98         0.62 
TCGA-EP-A3JL TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A495 
        9.96        14.40        32.45        19.10         0.20         0.03 
TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A3CG 
       60.36         0.39        51.06        30.74        58.49        22.13 
TCGA-G3-A3CJ TCGA-G3-A5SI TCGA-G3-A5SM TCGA-GJ-A6C0 TCGA-LG-A6GG TCGA-MI-A75G 
       19.53        14.70         4.37         1.02         0.49        14.24 
TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
        8.71        58.88         4.44 

$`AMP PEAK  8(5P15.33) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10X 
       48.99        27.91        46.78        27.52        27.52        25.32 
TCGA-BC-A10Y TCGA-BC-A110 TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-BC-A69H TCGA-BC-A69I 
       23.34        69.57         0.26         9.50         3.95         0.53 
TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A114 
        2.86         0.39         3.39         0.07        79.73        37.78 
TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED 
        7.33         0.46        21.76        66.31        19.79        75.65 
TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A1EK TCGA-DD-A39Z TCGA-DD-A3A0 
       45.11        49.15        29.16        18.35        19.76        25.81 
TCGA-DD-A3A2 TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NB 
       70.06        20.12       107.11        30.61        33.14        12.85 
TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NP 
       14.07        14.24        18.44        56.25        29.56        93.67 
TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A73B TCGA-DD-A73D TCGA-DD-A73E 
       12.26         0.30        80.75         9.30        10.98         1.45 
TCGA-DD-A73F TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A7PX TCGA-ED-A7PY 
       27.72        12.69        15.85        13.91         0.20         0.20 
TCGA-ED-A7PZ TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A3RK TCGA-ES-A2HS 
        0.20        18.74        19.99        11.74        11.93        22.85 
TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A496 TCGA-G3-A25S TCGA-G3-A25U 
        8.12         6.38         0.13         0.33         1.22        53.79 
TCGA-G3-A25V TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CK 
       28.27        14.86        21.53        25.64         5.92        19.23 
TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A6UC TCGA-K7-A6G5 TCGA-MI-A75C TCGA-MI-A75E 
       11.97         7.99         7.76         4.01         9.57         5.10 

  AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE 
                          0.03                           0.07 
  AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE 
                        113.00                         107.11 
  AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE 
                         13.41                          17.10 
[1] "0.0 - 113.0 (13.4)" "0.1 - 107.1 (17.1)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-O8-A75V 
  "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-O8-A75V 
  "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-O8-A75V 
  "AMP PEAK  8(5P15.33) MUTATED" 
[1] "hr=" "1"  
D8V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK  8(5P15.33) MUTATED        21       21         1         20
  AMP PEAK  8(5P15.33) WILD-TYPE      37       15         1         10
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK  8(5P15.33) MUTATED            2          0        0         1
  AMP PEAK  8(5P15.33) WILD-TYPE          2          5        1         0
                                vv
clus                             STAGE IVB
  AMP PEAK  8(5P15.33) MUTATED           0
  AMP PEAK  8(5P15.33) WILD-TYPE         2
D8V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK  8(5P15.33) MUTATED   22 23 25  1
  AMP PEAK  8(5P15.33) WILD-TYPE 39 17 15  7
D8V4, multiclass
    clus
vv   AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  T1                           22                             39
  T2                           23                             17
  T3                           25                             15
  T4                            1                              7
D8V5, binary
                                cls
clus                              0  1
  AMP PEAK  8(5P15.33) MUTATED   47  1
  AMP PEAK  8(5P15.33) WILD-TYPE 50  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(5P15.33) MUTATED     47    1
  AMP PEAK  8(5P15.33) WILD-TYPE   50    2
   clus
vv  AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  0                           47                             50
  1                            1                              2
                                vv
clus                             M0 M1 MX
  AMP PEAK  8(5P15.33) MUTATED   57  0 14
  AMP PEAK  8(5P15.33) WILD-TYPE 58  3 17
D8V6, multiclass
    clus
vv   AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  M0                           57                             58
  M1                            0                              3
  MX                           14                             17
D8V7, binary
                                cls
clus                              0  1
  AMP PEAK  8(5P15.33) MUTATED   27 44
  AMP PEAK  8(5P15.33) WILD-TYPE 31 47
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(5P15.33) MUTATED     27   44
  AMP PEAK  8(5P15.33) WILD-TYPE   31   47
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  FEMALE                           27                             31
  MALE                             44                             47
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK  8(5P15.33) MUTATED   59  5  0  5
  AMP PEAK  8(5P15.33) WILD-TYPE 63  6  1  5
D8V8, multiclass
    clus
vv   AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  R0                           59                             63
  R1                            5                              6
  R2                            0                              1
  RX                            5                              5

Clustering(9) Variable = AMP PEAK  9(5Q35.3) MUTATION ANALYSIS
D9V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  9(5Q35.3) MUTATED   27 27
  AMP PEAK  9(5Q35.3) WILD-TYPE 57 36
  AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE 
                           54                            93 
  AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE 
                           27                            36 
$`AMP PEAK  9(5Q35.3) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 
       37.32        27.52         2.99         5.03        44.42        13.84 
TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A115 TCGA-DD-A116 
        4.24         3.32         0.10         0.13        83.57        53.33 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EE 
      113.00         7.33        51.29        90.71        79.40         6.71 
TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A1 TCGA-DD-A3A3 TCGA-DD-A3A5 
       21.14        55.69         5.62         7.66        17.59       102.74 
TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A4ND TCGA-DD-A4NK TCGA-DD-A4NO TCGA-DD-A4NR 
       13.78         0.36        73.38        39.78        61.45         0.30 
TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73G TCGA-ED-A66Y TCGA-ED-A7XP TCGA-EP-A2KB 
       66.35        10.98       100.96         0.23         0.20        10.98 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-ES-A2HT TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A495 
        0.62         9.96        14.40         0.20         6.38         0.03 
TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A3CG 
        0.39         1.22        51.06        30.74        58.49        22.13 
TCGA-G3-A5SM TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75G TCGA-MI-A75I TCGA-O8-A75V 
        4.37         0.49         9.57        14.24         8.71         4.44 

$`AMP PEAK  9(5Q35.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10X 
       48.99        27.91        10.13        46.78        27.52        25.32 
TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 
       23.34         1.12        69.57         0.26        22.36         9.50 
TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 
        3.95         0.53         0.07         2.86         0.39         3.39 
TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A11A TCGA-DD-A11B 
        0.10         0.07        79.73        37.78         2.60         0.46 
TCGA-DD-A11C TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EF TCGA-DD-A1EG 
       21.76        66.31        19.79        75.65        12.95        45.11 
TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A39Z 
       49.15         6.02        29.16        18.35        13.64        19.76 
TCGA-DD-A3A0 TCGA-DD-A3A2 TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A3A9 TCGA-DD-A4NA 
       25.81        70.06        20.12       107.11        30.61        33.14 
TCGA-DD-A4NB TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NL 
       12.85        14.07        14.24        18.44        15.06        56.25 
TCGA-DD-A4NN TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NS TCGA-DD-A73B TCGA-DD-A73C 
       29.56        93.67        12.26        80.75         9.30         7.56 
TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A5KG 
       10.98         1.45        27.72        13.41        12.69        15.85 
TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A7PX TCGA-ED-A7PY TCGA-ED-A7PZ TCGA-ED-A82E 
       13.91        13.35         0.20         0.20         0.20         0.20 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A3RK TCGA-ES-A2HS TCGA-FV-A23B 
       18.74        19.99        11.74        11.93        22.85        32.45 
TCGA-FV-A2QR TCGA-FV-A3I1 TCGA-FV-A3R3 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25U 
       19.10         8.12         0.13         0.33        60.36        53.79 
TCGA-G3-A25V TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ 
       28.27        14.86        21.53        25.64         5.92        19.53 
TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A6UC TCGA-GJ-A6C0 
       19.23        14.70        11.97         7.99         7.76         1.02 
TCGA-K7-A6G5 TCGA-MI-A75E TCGA-NI-A4U2 
        4.01         5.10        58.88 

  AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE 
                         0.03                          0.07 
  AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE 
                       113.00                        107.11 
  AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE 
                        10.98                         14.86 
[1] "0.0 - 113.0 (11.0)" "0.1 - 107.1 (14.9)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-O8-A75V 
  "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-O8-A75V 
  "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-O8-A75V 
  "AMP PEAK  9(5Q35.3) MUTATED" 
[1] "hr=" "1.1"
D9V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK  9(5Q35.3) MUTATED        20       12         1         13
  AMP PEAK  9(5Q35.3) WILD-TYPE      38       24         1         17
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK  9(5Q35.3) MUTATED            2          0        1         0
  AMP PEAK  9(5Q35.3) WILD-TYPE          2          5        0         1
                               vv
clus                            STAGE IVB
  AMP PEAK  9(5Q35.3) MUTATED           0
  AMP PEAK  9(5Q35.3) WILD-TYPE         2
D9V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  9(5Q35.3) MUTATED   20 14 18  2
  AMP PEAK  9(5Q35.3) WILD-TYPE 41 26 22  6
D9V4, multiclass
    clus
vv   AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE
  T1                          20                            41
  T2                          14                            26
  T3                          18                            22
  T4                           2                             6
D9V5, binary
                               cls
clus                             0  1
  AMP PEAK  9(5Q35.3) MUTATED   33  0
  AMP PEAK  9(5Q35.3) WILD-TYPE 64  3
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(5Q35.3) MUTATED     33    0
  AMP PEAK  9(5Q35.3) WILD-TYPE   64    3
   clus
vv  AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE
  0                          33                            64
  1                           0                             3
                               vv
clus                            M0 M1 MX
  AMP PEAK  9(5Q35.3) MUTATED   42  1 11
  AMP PEAK  9(5Q35.3) WILD-TYPE 73  2 20
D9V6, multiclass
    clus
vv   AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE
  M0                          42                            73
  M1                           1                             2
  MX                          11                            20
D9V7, binary
                               cls
clus                             0  1
  AMP PEAK  9(5Q35.3) MUTATED   19 35
  AMP PEAK  9(5Q35.3) WILD-TYPE 39 56
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(5Q35.3) MUTATED     19   35
  AMP PEAK  9(5Q35.3) WILD-TYPE   39   56
        clus
vv       AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE
  FEMALE                          19                            39
  MALE                            35                            56
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  9(5Q35.3) MUTATED   44  6  1  1
  AMP PEAK  9(5Q35.3) WILD-TYPE 78  5  0  9
D9V8, multiclass
    clus
vv   AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE
  R0                          44                            78
  R1                           6                             5
  R2                           1                             0
  RX                           1                             9

Clustering(10) Variable = AMP PEAK 10(6P25.2) MUTATION ANALYSIS
D10V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 10(6P25.2) MUTATED   34 28
  AMP PEAK 10(6P25.2) WILD-TYPE 50 35
  AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE 
                           62                            85 
  AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE 
                           28                            35 
$`AMP PEAK 10(6P25.2) MUTATED`
TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10U TCGA-BC-A112 TCGA-BC-A217 TCGA-BC-A3KG 
       27.91        10.13        27.52         5.03        13.84        22.36 
TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5261 TCGA-CC-5263 TCGA-CC-A3MB TCGA-CC-A3MC 
        3.95         0.53         0.39         4.24         0.10         0.13 
TCGA-DD-A114 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EE 
       37.78       113.00         7.33         2.60        21.76         6.71 
TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A39X TCGA-DD-A39Y 
       12.95        45.11        49.15        29.16        55.69         5.62 
TCGA-DD-A39Z TCGA-DD-A3A5 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NH 
       19.76       102.74        13.78         0.36        30.61        14.24 
TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NN TCGA-DD-A4NS TCGA-DD-A73C TCGA-DD-A73D 
       15.06        39.78        29.56        80.75         7.56        10.98 
TCGA-DD-A73E TCGA-ED-A66X TCGA-ED-A7PY TCGA-ED-A7PZ TCGA-ED-A82E TCGA-EP-A2KA 
        1.45        13.35         0.20         0.20         0.20        11.74 
TCGA-EP-A2KB TCGA-EP-A2KC TCGA-ES-A2HS TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A3R3 
       10.98         0.62        22.85         0.20         6.38         0.13 
TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A3CG 
        0.39         1.22        53.79        58.49        14.86        22.13 
TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SL TCGA-G3-A6UC TCGA-LG-A6GG TCGA-MI-A75G 
       19.23        14.70         7.99         7.76         0.49        14.24 
TCGA-MI-A75I TCGA-O8-A75V 
        8.71         4.44 

$`AMP PEAK 10(6P25.2) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10X 
       48.99        37.32        46.78        27.52         2.99        25.32 
TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A5W4 
       23.34         1.12        69.57        44.42         0.26         9.50 
TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5262 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA 
        0.07         2.86         3.39         3.32         0.10         0.07 
TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1E9 
       79.73        83.57        53.33         0.46        51.29        90.71 
TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EI TCGA-DD-A1EK 
       79.40        66.31        19.79        75.65         6.02        18.35 
TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 
       13.64        21.14        25.81         7.66        70.06        17.59 
TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF 
       20.12       107.11        33.14        12.85        73.38        14.07 
TCGA-DD-A4NI TCGA-DD-A4NL TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NR 
       18.44        56.25        61.45        93.67        12.26         0.30 
TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73F TCGA-DD-A73G TCGA-ED-A459 
       66.35        10.98         9.30        27.72       100.96        13.41 
TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7XP 
       12.69        15.85        13.91         0.23         0.20         0.20 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B 
       18.74        19.99         9.96        11.93        14.40        32.45 
TCGA-FV-A2QR TCGA-FV-A3I1 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25T 
       19.10         8.12         0.03         0.33        60.36        51.06 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ 
       28.27        30.74        21.53        25.64         5.92        19.53 
TCGA-G3-A5SJ TCGA-G3-A5SM TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-MI-A75C TCGA-MI-A75E 
       11.97         4.37         1.02         4.01         9.57         5.10 
TCGA-NI-A4U2 
       58.88 

  AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE 
                         0.10                          0.03 
  AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE 
                       113.00                        107.11 
  AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE 
                        11.36                         18.44 
[1] "0.1 - 113.0 (11.4)" "0.0 - 107.1 (18.4)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-O8-A75V 
  "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-O8-A75V 
  "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-O8-A75V 
  "AMP PEAK 10(6P25.2) MUTATED" 
[1] "hr=" "1.5"
D10V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 10(6P25.2) MUTATED        22       17         2         11
  AMP PEAK 10(6P25.2) WILD-TYPE      36       19         0         19
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 10(6P25.2) MUTATED            3          1        1         0
  AMP PEAK 10(6P25.2) WILD-TYPE          1          4        0         1
                               vv
clus                            STAGE IVB
  AMP PEAK 10(6P25.2) MUTATED           1
  AMP PEAK 10(6P25.2) WILD-TYPE         1
D10V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 10(6P25.2) MUTATED   23 19 19  1
  AMP PEAK 10(6P25.2) WILD-TYPE 38 21 21  7
D10V4, multiclass
    clus
vv   AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE
  T1                          23                            38
  T2                          19                            21
  T3                          19                            21
  T4                           1                             7
D10V5, binary
                               cls
clus                             0  1
  AMP PEAK 10(6P25.2) MUTATED   37  1
  AMP PEAK 10(6P25.2) WILD-TYPE 60  2
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(6P25.2) MUTATED     37    1
  AMP PEAK 10(6P25.2) WILD-TYPE   60    2
   clus
vv  AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE
  0                          37                            60
  1                           1                             2
                               vv
clus                            M0 M1 MX
  AMP PEAK 10(6P25.2) MUTATED   47  2 13
  AMP PEAK 10(6P25.2) WILD-TYPE 68  1 18
D10V6, multiclass
    clus
vv   AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE
  M0                          47                            68
  M1                           2                             1
  MX                          13                            18
D10V7, binary
                               cls
clus                             0  1
  AMP PEAK 10(6P25.2) MUTATED   26 36
  AMP PEAK 10(6P25.2) WILD-TYPE 32 55
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(6P25.2) MUTATED     26   36
  AMP PEAK 10(6P25.2) WILD-TYPE   32   55
        clus
vv       AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE
  FEMALE                          26                            32
  MALE                            36                            55
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 10(6P25.2) MUTATED   53  5  1  3
  AMP PEAK 10(6P25.2) WILD-TYPE 69  6  0  7
D10V8, multiclass
    clus
vv   AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE
  R0                          53                            69
  R1                           5                             6
  R2                           1                             0
  RX                           3                             7

Clustering(11) Variable = AMP PEAK 11(6P21.1) MUTATION ANALYSIS
D11V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 11(6P21.1) MUTATED   33 29
  AMP PEAK 11(6P21.1) WILD-TYPE 51 34
  AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE 
                           62                            85 
  AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE 
                           29                            34 
$`AMP PEAK 11(6P21.1) MUTATED`
TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A216 TCGA-BC-A217 
       27.52        27.52        23.34         1.12        44.42        13.84 
TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5261 TCGA-CC-5263 
        0.26        22.36         3.95         0.53         0.39         4.24 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A119 
        0.10         0.13        37.78        83.57       113.00         7.33 
TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1EB TCGA-DD-A1EE TCGA-DD-A1EF 
        2.60        21.76        51.29        66.31         6.71        12.95 
TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A5 
       45.11        49.15        55.69         5.62        19.76       102.74 
TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NH TCGA-DD-A4NK TCGA-DD-A4NN TCGA-DD-A4NS 
        0.36        30.61        14.24        39.78        29.56        80.75 
TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F TCGA-DD-A73G TCGA-ED-A66X TCGA-ED-A7PZ 
       10.98         1.45        27.72       100.96        13.35         0.20 
TCGA-ED-A82E TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-ES-A2HS TCGA-FV-A23B 
        0.20        11.74        10.98         0.62        22.85        32.45 
TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25X 
        0.20         6.38         0.39         1.22        53.79        58.49 
TCGA-G3-A3CG TCGA-G3-A3CK TCGA-G3-A5SL TCGA-G3-A6UC TCGA-LG-A6GG TCGA-MI-A75G 
       22.13        19.23         7.99         7.76         0.49        14.24 
TCGA-MI-A75I TCGA-O8-A75V 
        8.71         4.44 

$`AMP PEAK 11(6P21.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10W 
       48.99        27.91        37.32        10.13        46.78         2.99 
TCGA-BC-A10X TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5260 
       25.32        69.57         5.03         9.50         0.07         2.86 
TCGA-CC-5262 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A116 
        3.39         3.32         0.10         0.07        79.73        53.33 
TCGA-DD-A11B TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EI 
        0.46        90.71        79.40        19.79        75.65         6.02 
TCGA-DD-A1EJ TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A3A0 TCGA-DD-A3A1 
       29.16        18.35        13.64        21.14        25.81         7.66 
TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A4NA 
       70.06        17.59        20.12       107.11        13.78        33.14 
TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NL 
       12.85        73.38        14.07        18.44        15.06        56.25 
TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NV TCGA-DD-A73A 
       61.45        93.67        12.26         0.30        66.35        10.98 
TCGA-DD-A73B TCGA-DD-A73C TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 
        9.30         7.56        13.41        12.69        15.85        13.91 
TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7PY TCGA-ED-A7XP TCGA-EP-A12J TCGA-EP-A26S 
        0.23         0.20         0.20         0.20        18.74        19.99 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3I1 TCGA-FV-A3R3 
        9.96        11.93        14.40        19.10         8.12         0.13 
TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25W 
        0.03         0.33        60.36        51.06        28.27        30.74 
TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A5SI 
       14.86        21.53        25.64         5.92        19.53        14.70 
TCGA-G3-A5SJ TCGA-G3-A5SM TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-MI-A75C TCGA-MI-A75E 
       11.97         4.37         1.02         4.01         9.57         5.10 
TCGA-NI-A4U2 
       58.88 

  AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE 
                         0.10                          0.03 
  AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE 
                       113.00                        107.11 
  AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE 
                       13.595                        14.400 
[1] "0.1 - 113.0 (13.6)" "0.0 - 107.1 (14.4)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-O8-A75V 
  "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-O8-A75V 
  "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-O8-A75V 
  "AMP PEAK 11(6P21.1) MUTATED" 
[1] "hr=" "1.2"
D11V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 11(6P21.1) MUTATED        26       15         2         11
  AMP PEAK 11(6P21.1) WILD-TYPE      32       21         0         19
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 11(6P21.1) MUTATED            2          0        1         0
  AMP PEAK 11(6P21.1) WILD-TYPE          2          5        0         1
                               vv
clus                            STAGE IVB
  AMP PEAK 11(6P21.1) MUTATED           1
  AMP PEAK 11(6P21.1) WILD-TYPE         1
D11V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 11(6P21.1) MUTATED   26 17 16  3
  AMP PEAK 11(6P21.1) WILD-TYPE 35 23 24  5
D11V4, multiclass
    clus
vv   AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE
  T1                          26                            35
  T2                          17                            23
  T3                          16                            24
  T4                           3                             5
D11V5, binary
                               cls
clus                             0  1
  AMP PEAK 11(6P21.1) MUTATED   38  0
  AMP PEAK 11(6P21.1) WILD-TYPE 59  3
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(6P21.1) MUTATED     38    0
  AMP PEAK 11(6P21.1) WILD-TYPE   59    3
   clus
vv  AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE
  0                          38                            59
  1                           0                             3
                               vv
clus                            M0 M1 MX
  AMP PEAK 11(6P21.1) MUTATED   48  2 12
  AMP PEAK 11(6P21.1) WILD-TYPE 67  1 19
D11V6, multiclass
    clus
vv   AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE
  M0                          48                            67
  M1                           2                             1
  MX                          12                            19
D11V7, binary
                               cls
clus                             0  1
  AMP PEAK 11(6P21.1) MUTATED   27 35
  AMP PEAK 11(6P21.1) WILD-TYPE 31 56
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(6P21.1) MUTATED     27   35
  AMP PEAK 11(6P21.1) WILD-TYPE   31   56
        clus
vv       AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE
  FEMALE                          27                            31
  MALE                            35                            56
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 11(6P21.1) MUTATED   53  5  1  3
  AMP PEAK 11(6P21.1) WILD-TYPE 69  6  0  7
D11V8, multiclass
    clus
vv   AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE
  R0                          53                            69
  R1                           5                             6
  R2                           1                             0
  RX                           3                             7

Clustering(12) Variable = AMP PEAK 12(6Q12) MUTATION ANALYSIS
D12V1, survival
                             sevent
clus2                          0  1
  AMP PEAK 12(6Q12) MUTATED   23 21
  AMP PEAK 12(6Q12) WILD-TYPE 61 42
  AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE 
                         44                         103 
  AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE 
                         21                          42 
$`AMP PEAK 12(6Q12) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10T TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A69H 
       37.32        27.52        13.84         0.26        22.36         3.95 
TCGA-CC-5263 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A118 
        4.24         0.10         0.13        37.78        83.57       113.00 
TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH 
        7.33         2.60        21.76         6.71        12.95        49.15 
TCGA-DD-A1EJ TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A5 TCGA-DD-A3A7 TCGA-DD-A3A8 
       29.16         5.62        19.76       102.74        13.78         0.36 
TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NH TCGA-DD-A4NK TCGA-DD-A4NN TCGA-DD-A4NS 
       30.61        33.14        14.24        39.78        29.56        80.75 
TCGA-DD-A73E TCGA-DD-A73G TCGA-ED-A66X TCGA-ED-A7PZ TCGA-EP-A2KB TCGA-EP-A2KC 
        1.45       100.96        13.35         0.20        10.98         0.62 
TCGA-ES-A2HS TCGA-FV-A3I0 TCGA-G3-A25U TCGA-G3-A3CG TCGA-G3-A3CK TCGA-G3-A6UC 
       22.85         0.20        53.79        22.13        19.23         7.76 
TCGA-LG-A6GG TCGA-O8-A75V 
        0.49         4.44 

$`AMP PEAK 12(6Q12) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W 
       48.99        27.91        10.13        46.78        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
       25.32        23.34         1.12        69.57         5.03        44.42 
TCGA-BC-A5W4 TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 
        9.50         0.53         0.07         2.86         0.39         3.39 
TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A116 TCGA-DD-A11B 
        3.32         0.10         0.07        79.73        53.33         0.46 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED 
       51.29        90.71        79.40        66.31        19.79        75.65 
TCGA-DD-A1EG TCGA-DD-A1EI TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39X 
       45.11         6.02        18.35        13.64        21.14        55.69 
TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A6 
       25.81         7.66        70.06        17.59        20.12       107.11 
TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NL 
       12.85        73.38        14.07        18.44        15.06        56.25 
TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NV TCGA-DD-A73A 
       61.45        93.67        12.26         0.30        66.35        10.98 
TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73F TCGA-ED-A459 TCGA-ED-A4XI 
        9.30         7.56        10.98        27.72        13.41        12.69 
TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7PY TCGA-ED-A7XP 
       15.85        13.91         0.23         0.20         0.20         0.20 
TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A3JL TCGA-EP-A3RK 
        0.20        18.74        19.99        11.74         9.96        11.93 
TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 
       14.40        32.45        19.10         8.12         6.38         0.13 
TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T 
        0.03         0.33        60.36         0.39         1.22        51.06 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CH 
       28.27        30.74        58.49        14.86        21.53        25.64 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM 
        5.92        19.53        14.70        11.97         7.99         4.37 
TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75G TCGA-MI-A75I 
        1.02         4.01         9.57         5.10        14.24         8.71 
TCGA-NI-A4U2 
       58.88 

  AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE 
                       0.10                        0.03 
  AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE 
                     113.00                      107.11 
  AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE 
                      14.04                       14.07 
[1] "0.1 - 113.0 (14.0)" "0.0 - 107.1 (14.1)"
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-FV-A495                  TCGA-FV-A496 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-O8-A75V 
  "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-FV-A495                  TCGA-FV-A496 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-O8-A75V 
  "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-FV-A495                  TCGA-FV-A496 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-O8-A75V 
  "AMP PEAK 12(6Q12) MUTATED" 
[1] "hr=" "1.1"
D12V2, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 12(6Q12) MUTATED        16       10         2          7          3
  AMP PEAK 12(6Q12) WILD-TYPE      42       26         0         23          1
                             vv
clus                          STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  AMP PEAK 12(6Q12) MUTATED            2        1         0         1
  AMP PEAK 12(6Q12) WILD-TYPE          3        0         1         1
D12V3, multiclass
                             vv
clus                          T1 T2 T3 T4
  AMP PEAK 12(6Q12) MUTATED   17 12 13  2
  AMP PEAK 12(6Q12) WILD-TYPE 44 28 27  6
D12V4, multiclass
    clus
vv   AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  T1                        17                          44
  T2                        12                          28
  T3                        13                          27
  T4                         2                           6
D12V5, binary
                             cls
clus                           0  1
  AMP PEAK 12(6Q12) MUTATED   27  2
  AMP PEAK 12(6Q12) WILD-TYPE 70  1
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 12(6Q12) MUTATED     27    2
  AMP PEAK 12(6Q12) WILD-TYPE   70    1
   clus
vv  AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  0                        27                          70
  1                         2                           1
                             vv
clus                          M0 M1 MX
  AMP PEAK 12(6Q12) MUTATED   36  2  6
  AMP PEAK 12(6Q12) WILD-TYPE 79  1 25
D12V6, multiclass
    clus
vv   AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  M0                        36                          79
  M1                         2                           1
  MX                         6                          25
D12V7, binary
                             cls
clus                           0  1
  AMP PEAK 12(6Q12) MUTATED   20 24
  AMP PEAK 12(6Q12) WILD-TYPE 38 67
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 12(6Q12) MUTATED     20   24
  AMP PEAK 12(6Q12) WILD-TYPE   38   67
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  FEMALE                        20                          38
  MALE                          24                          67
                             vv
clus                          R0 R1 R2 RX
  AMP PEAK 12(6Q12) MUTATED   37  4  1  2
  AMP PEAK 12(6Q12) WILD-TYPE 85  7  0  8
D12V8, multiclass
    clus
vv   AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  R0                        37                          85
  R1                         4                           7
  R2                         1                           0
  RX                         2                           8

Clustering(13) Variable = AMP PEAK 13(6Q12) MUTATION ANALYSIS
D13V1, survival
                             sevent
clus2                          0  1
  AMP PEAK 13(6Q12) MUTATED   18 13
  AMP PEAK 13(6Q12) WILD-TYPE 66 50
  AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE 
                         31                         116 
  AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE 
                         13                          50 
$`AMP PEAK 13(6Q12) MUTATED`
TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A69H TCGA-CC-5260 TCGA-CC-5263 
       13.84         0.26        22.36         3.95         2.86         4.24 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A 
        0.10         0.13        83.57       113.00         7.33         2.60 
TCGA-DD-A11D TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A39Y TCGA-DD-A3A8 TCGA-DD-A3A9 
       51.29        12.95        49.15         5.62         0.36        30.61 
TCGA-DD-A73G TCGA-ED-A66X TCGA-ED-A7PZ TCGA-EP-A12J TCGA-EP-A2KA TCGA-EP-A2KB 
      100.96        13.35         0.20        18.74        11.74        10.98 
TCGA-EP-A2KC TCGA-ES-A2HS TCGA-FV-A3I0 TCGA-G3-A25U TCGA-G3-A3CK TCGA-LG-A6GG 
        0.62        22.85         0.20        53.79        19.23         0.49 
TCGA-O8-A75V 
        4.44 

$`AMP PEAK 13(6Q12) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
       48.99        27.91        37.32        10.13        46.78        27.52 
TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 
       27.52         2.99        25.32        23.34         1.12        69.57 
TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A5W4 TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5261 
        5.03        44.42         9.50         0.53         0.07         0.39 
TCGA-CC-5262 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A114 
        3.39         3.32         0.10         0.07        79.73        37.78 
TCGA-DD-A116 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB 
       53.33         0.46        21.76        90.71        79.40        66.31 
TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EG TCGA-DD-A1EI TCGA-DD-A1EJ 
       19.79        75.65         6.71        45.11         6.02        29.16 
TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Z TCGA-DD-A3A0 
       18.35        13.64        21.14        55.69        19.76        25.81 
TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 
        7.66        70.06        17.59        20.12       102.74       107.11 
TCGA-DD-A3A7 TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH 
       13.78        33.14        12.85        73.38        14.07        14.24 
TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO 
       18.44        15.06        39.78        56.25        29.56        61.45 
TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A 
       93.67        12.26         0.30        80.75        66.35        10.98 
TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F TCGA-ED-A459 
        9.30         7.56        10.98         1.45        27.72        13.41 
TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7PY 
       12.69        15.85        13.91         0.23         0.20         0.20 
TCGA-ED-A7XP TCGA-ED-A82E TCGA-EP-A26S TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT 
        0.20         0.20        19.99         9.96        11.93        14.40 
TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 
       32.45        19.10         8.12         6.38         0.13         0.03 
TCGA-FV-A496 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25V 
        0.33        60.36         0.39         1.22        51.06        28.27 
TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH 
       30.74        58.49        14.86        21.53        22.13        25.64 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM 
        5.92        19.53        14.70        11.97         7.99         4.37 
TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75G 
        7.76         1.02         4.01         9.57         5.10        14.24 
TCGA-MI-A75I TCGA-NI-A4U2 
        8.71        58.88 

  AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE 
                       0.10                        0.03 
  AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE 
                     113.00                      107.11 
  AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE 
                      10.98                       14.78 
[1] "0.1 - 113.0 (11.0)" "0.0 - 107.1 (14.8)"
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "AMP PEAK 13(6Q12) MUTATED"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "AMP PEAK 13(6Q12) MUTATED"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A115                  TCGA-DD-A116 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
  "AMP PEAK 13(6Q12) MUTATED"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
  "AMP PEAK 13(6Q12) MUTATED"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-FV-A495                  TCGA-FV-A496 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-O8-A75V 
  "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "AMP PEAK 13(6Q12) MUTATED"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "AMP PEAK 13(6Q12) MUTATED"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A115                  TCGA-DD-A116 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
  "AMP PEAK 13(6Q12) MUTATED"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
  "AMP PEAK 13(6Q12) MUTATED"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-FV-A495                  TCGA-FV-A496 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-O8-A75V 
  "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "AMP PEAK 13(6Q12) MUTATED"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "AMP PEAK 13(6Q12) MUTATED"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A115                  TCGA-DD-A116 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
  "AMP PEAK 13(6Q12) MUTATED"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"AMP PEAK 13(6Q12) WILD-TYPE"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
  "AMP PEAK 13(6Q12) MUTATED"   "AMP PEAK 13(6Q12) MUTATED" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-FV-A495                  TCGA-FV-A496 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
  "AMP PEAK 13(6Q12) MUTATED" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
"AMP PEAK 13(6Q12) WILD-TYPE" "AMP PEAK 13(6Q12) WILD-TYPE" 
                 TCGA-O8-A75V 
  "AMP PEAK 13(6Q12) MUTATED" 
[1] "hr=" "1.1"
D13V2, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 13(6Q12) MUTATED        13        8         1          6          0
  AMP PEAK 13(6Q12) WILD-TYPE      45       28         1         24          4
                             vv
clus                          STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  AMP PEAK 13(6Q12) MUTATED            1        1         0         1
  AMP PEAK 13(6Q12) WILD-TYPE          4        0         1         1
D13V3, multiclass
                             vv
clus                          T1 T2 T3 T4
  AMP PEAK 13(6Q12) MUTATED   13  8  8  2
  AMP PEAK 13(6Q12) WILD-TYPE 48 32 32  6
D13V4, multiclass
    clus
vv   AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE
  T1                        13                          48
  T2                         8                          32
  T3                         8                          32
  T4                         2                           6
D13V5, binary
                             cls
clus                           0  1
  AMP PEAK 13(6Q12) MUTATED   18  0
  AMP PEAK 13(6Q12) WILD-TYPE 79  3
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 13(6Q12) MUTATED     18    0
  AMP PEAK 13(6Q12) WILD-TYPE   79    3
   clus
vv  AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE
  0                        18                          79
  1                         0                           3
                             vv
clus                          M0 M1 MX
  AMP PEAK 13(6Q12) MUTATED   23  2  6
  AMP PEAK 13(6Q12) WILD-TYPE 92  1 25
D13V6, multiclass
    clus
vv   AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE
  M0                        23                          92
  M1                         2                           1
  MX                         6                          25
D13V7, binary
                             cls
clus                           0  1
  AMP PEAK 13(6Q12) MUTATED   14 17
  AMP PEAK 13(6Q12) WILD-TYPE 44 74
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 13(6Q12) MUTATED     14   17
  AMP PEAK 13(6Q12) WILD-TYPE   44   74
        clus
vv       AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE
  FEMALE                        14                          44
  MALE                          17                          74
                             vv
clus                          R0 R1 R2 RX
  AMP PEAK 13(6Q12) MUTATED   27  1  1  2
  AMP PEAK 13(6Q12) WILD-TYPE 95 10  0  8
D13V8, multiclass
    clus
vv   AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE
  R0                        27                          95
  R1                         1                          10
  R2                         1                           0
  RX                         2                           8

Clustering(14) Variable = AMP PEAK 14(7Q21.2) MUTATION ANALYSIS
D14V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 14(7Q21.2) MUTATED   31 24
  AMP PEAK 14(7Q21.2) WILD-TYPE 53 39
  AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE 
                           55                            92 
  AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE 
                           24                            39 
$`AMP PEAK 14(7Q21.2) MUTATED`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10U TCGA-BC-A5W4 TCGA-BC-A69H 
       48.99        37.32        10.13        27.52         9.50         3.95 
TCGA-CC-5260 TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-DD-A118 TCGA-DD-A11A 
        2.86         0.10         0.07         0.10       113.00         2.60 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EC TCGA-DD-A1EE TCGA-DD-A1EJ TCGA-DD-A39V 
       51.29        90.71        19.79         6.71        29.16        21.14 
TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A2 TCGA-DD-A3A7 TCGA-DD-A4NA 
        5.62        19.76        25.81        70.06        13.78        33.14 
TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NQ TCGA-DD-A4NV TCGA-DD-A73C TCGA-DD-A73E 
       18.44        39.78        12.26        66.35         7.56         1.45 
TCGA-DD-A73G TCGA-ED-A459 TCGA-ED-A66Y TCGA-ED-A7PY TCGA-EP-A26S TCGA-EP-A2KA 
      100.96        13.41         0.23         0.20        19.99        11.74 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-ES-A2HS TCGA-FV-A2QR TCGA-FV-A3I1 TCGA-FV-A3R2 
        0.62         9.96        22.85        19.10         8.12         6.38 
TCGA-FV-A4ZP TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25X TCGA-G3-A3CG TCGA-G3-A3CJ 
       60.36        51.06        28.27        58.49        22.13        19.53 
TCGA-G3-A5SL TCGA-G3-A5SM TCGA-G3-A6UC TCGA-LG-A6GG TCGA-MI-A75E TCGA-MI-A75G 
        7.99         4.37         7.76         0.49         5.10        14.24 
TCGA-NI-A4U2 
       58.88 

$`AMP PEAK 14(7Q21.2) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y 
       27.91        46.78        27.52         2.99        25.32        23.34 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF 
        1.12        69.57         5.03        44.42        13.84         0.26 
TCGA-BC-A3KG TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 
       22.36         0.53         0.07         0.39         3.39         4.24 
TCGA-CC-A1HT TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 
        3.32         0.13        79.73        37.78        83.57        53.33 
TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1ED 
        7.33         0.46        21.76        79.40        66.31        75.65 
TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EK TCGA-DD-A1EL 
       12.95        45.11        49.15         6.02        18.35        13.64 
TCGA-DD-A39X TCGA-DD-A3A1 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 
       55.69         7.66        17.59        20.12       102.74       107.11 
TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH 
        0.36        30.61        12.85        73.38        14.07        14.24 
TCGA-DD-A4NJ TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NR 
       15.06        56.25        29.56        61.45        93.67         0.30 
TCGA-DD-A4NS TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73D TCGA-DD-A73F TCGA-ED-A4XI 
       80.75        10.98         9.30        10.98        27.72        12.69 
TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A7PX TCGA-ED-A7PZ TCGA-ED-A7XP 
       15.85        13.91        13.35         0.20         0.20         0.20 
TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A2KB TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B 
        0.20        18.74        10.98        11.93        14.40        32.45 
TCGA-FV-A3I0 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25S 
        0.20         0.13         0.03         0.33         0.39         1.22 
TCGA-G3-A25U TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI 
       53.79        30.74        14.86        21.53        25.64         5.92 
TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-MI-A75C 
       19.23        14.70        11.97         1.02         4.01         9.57 
TCGA-MI-A75I TCGA-O8-A75V 
        8.71         4.44 

  AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE 
                         0.07                          0.03 
  AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE 
                       113.00                        107.11 
  AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE 
                        14.24                         13.99 
[1] "0.1 - 113.0 (14.2)" "0.0 - 107.1 (14.0)"
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK 14(7Q21.2) MUTATED"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK 14(7Q21.2) MUTATED"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 14(7Q21.2) MUTATED"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "AMP PEAK 14(7Q21.2) MUTATED"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
  "AMP PEAK 14(7Q21.2) MUTATED"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
  "AMP PEAK 14(7Q21.2) MUTATED"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-O8-A75V 
"AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK 14(7Q21.2) MUTATED"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK 14(7Q21.2) MUTATED"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 14(7Q21.2) MUTATED"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "AMP PEAK 14(7Q21.2) MUTATED"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
  "AMP PEAK 14(7Q21.2) MUTATED"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
  "AMP PEAK 14(7Q21.2) MUTATED"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-O8-A75V 
"AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK 14(7Q21.2) MUTATED"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK 14(7Q21.2) MUTATED"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 14(7Q21.2) MUTATED"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "AMP PEAK 14(7Q21.2) MUTATED"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
  "AMP PEAK 14(7Q21.2) MUTATED"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK 14(7Q21.2) WILD-TYPE" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK 14(7Q21.2) MUTATED" "AMP PEAK 14(7Q21.2) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
  "AMP PEAK 14(7Q21.2) MUTATED"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK 14(7Q21.2) WILD-TYPE"   "AMP PEAK 14(7Q21.2) MUTATED" 
                   TCGA-O8-A75V 
"AMP PEAK 14(7Q21.2) WILD-TYPE" 
[1] "hr=" "1"  
D14V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 14(7Q21.2) MUTATED        17       14         0         16
  AMP PEAK 14(7Q21.2) WILD-TYPE      41       22         2         14
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 14(7Q21.2) MUTATED            2          4        0         0
  AMP PEAK 14(7Q21.2) WILD-TYPE          2          1        1         1
                               vv
clus                            STAGE IVB
  AMP PEAK 14(7Q21.2) MUTATED           0
  AMP PEAK 14(7Q21.2) WILD-TYPE         2
D14V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 14(7Q21.2) MUTATED   18 17 19  2
  AMP PEAK 14(7Q21.2) WILD-TYPE 43 23 21  6
D14V4, multiclass
    clus
vv   AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE
  T1                          18                            43
  T2                          17                            23
  T3                          19                            21
  T4                           2                             6
D14V5, binary
                               cls
clus                             0  1
  AMP PEAK 14(7Q21.2) MUTATED   33  2
  AMP PEAK 14(7Q21.2) WILD-TYPE 64  1
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(7Q21.2) MUTATED     33    2
  AMP PEAK 14(7Q21.2) WILD-TYPE   64    1
   clus
vv  AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE
  0                          33                            64
  1                           2                             1
                               vv
clus                            M0 M1 MX
  AMP PEAK 14(7Q21.2) MUTATED   45  0 11
  AMP PEAK 14(7Q21.2) WILD-TYPE 70  3 20
D14V6, multiclass
    clus
vv   AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE
  M0                          45                            70
  M1                           0                             3
  MX                          11                            20
D14V7, binary
                               cls
clus                             0  1
  AMP PEAK 14(7Q21.2) MUTATED   20 36
  AMP PEAK 14(7Q21.2) WILD-TYPE 38 55
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(7Q21.2) MUTATED     20   36
  AMP PEAK 14(7Q21.2) WILD-TYPE   38   55
        clus
vv       AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE
  FEMALE                          20                            38
  MALE                            36                            55
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 14(7Q21.2) MUTATED   45  6  0  3
  AMP PEAK 14(7Q21.2) WILD-TYPE 77  5  1  7
D14V8, multiclass
    clus
vv   AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE
  R0                          45                            77
  R1                           6                             5
  R2                           0                             1
  RX                           3                             7

Clustering(15) Variable = AMP PEAK 15(7Q31.2) MUTATION ANALYSIS
D15V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 15(7Q31.2) MUTATED   31 21
  AMP PEAK 15(7Q31.2) WILD-TYPE 53 42
  AMP PEAK 15(7Q31.2) MUTATED AMP PEAK 15(7Q31.2) WILD-TYPE 
                           52                            95 
  AMP PEAK 15(7Q31.2) MUTATED AMP PEAK 15(7Q31.2) WILD-TYPE 
                           21                            42 
$`AMP PEAK 15(7Q31.2) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10U TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A5W4 
       37.32        10.13        27.52        44.42         0.26         9.50 
TCGA-BC-A69H TCGA-CC-5260 TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-DD-A118 TCGA-DD-A11D 
        3.95         2.86         0.10         0.10       113.00        51.29 
TCGA-DD-A1E9 TCGA-DD-A1EC TCGA-DD-A1EE TCGA-DD-A1EJ TCGA-DD-A39V TCGA-DD-A39Y 
       90.71        19.79         6.71        29.16        21.14         5.62 
TCGA-DD-A39Z TCGA-DD-A3A2 TCGA-DD-A4NA TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NQ 
       19.76        70.06        33.14        18.44        39.78        12.26 
TCGA-DD-A4NV TCGA-DD-A73C TCGA-DD-A73E TCGA-DD-A73G TCGA-ED-A459 TCGA-ED-A66Y 
       66.35         7.56         1.45       100.96        13.41         0.23 
TCGA-ED-A7PY TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KC TCGA-EP-A3JL TCGA-ES-A2HS 
        0.20        19.99        11.74         0.62         9.96        22.85 
TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A4ZP TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25X 
        8.12         6.38        60.36        51.06        28.27        58.49 
TCGA-G3-A25Y TCGA-G3-A3CG TCGA-G3-A3CJ TCGA-G3-A5SL TCGA-G3-A5SM TCGA-G3-A6UC 
       14.86        22.13        19.53         7.99         4.37         7.76 
TCGA-LG-A6GG TCGA-MI-A75E TCGA-MI-A75G TCGA-NI-A4U2 
        0.49         5.10        14.24        58.88 

$`AMP PEAK 15(7Q31.2) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10X 
       48.99        27.91        46.78        27.52         2.99        25.32 
TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A217 TCGA-BC-A3KG 
       23.34         1.12        69.57         5.03        13.84        22.36 
TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT 
        0.53         0.07         0.39         3.39         4.24         3.32 
TCGA-CC-A3MA TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 
        0.07         0.13        79.73        37.78        83.57        53.33 
TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A1EA TCGA-DD-A1EB 
        7.33         2.60         0.46        21.76        79.40        66.31 
TCGA-DD-A1ED TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EK 
       75.65        12.95        45.11        49.15         6.02        18.35 
TCGA-DD-A1EL TCGA-DD-A39X TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A3 TCGA-DD-A3A4 
       13.64        55.69        25.81         7.66        17.59        20.12 
TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NB 
      102.74       107.11        13.78         0.36        30.61        12.85 
TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NL TCGA-DD-A4NN 
       73.38        14.07        14.24        15.06        56.25        29.56 
TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A73A TCGA-DD-A73B 
       61.45        93.67         0.30        80.75        10.98         9.30 
TCGA-DD-A73D TCGA-DD-A73F TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X 
       10.98        27.72        12.69        15.85        13.91        13.35 
TCGA-ED-A7PX TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A2KB 
        0.20         0.20         0.20         0.20        18.74        10.98 
TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R3 
       11.93        14.40        32.45        19.10         0.20         0.13 
TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25W 
        0.03         0.33         0.39         1.22        53.79        30.74 
TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ 
       21.53        25.64         5.92        19.23        14.70        11.97 
TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-MI-A75C TCGA-MI-A75I TCGA-O8-A75V 
        1.02         4.01         9.57         8.71         4.44 

  AMP PEAK 15(7Q31.2) MUTATED AMP PEAK 15(7Q31.2) WILD-TYPE 
                         0.10                          0.03 
  AMP PEAK 15(7Q31.2) MUTATED AMP PEAK 15(7Q31.2) WILD-TYPE 
                       113.00                        107.11 
  AMP PEAK 15(7Q31.2) MUTATED AMP PEAK 15(7Q31.2) WILD-TYPE 
                        14.55                         13.91 
[1] "0.1 - 113.0 (14.6)" "0.0 - 107.1 (13.9)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK 15(7Q31.2) MUTATED"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "AMP PEAK 15(7Q31.2) MUTATED"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
  "AMP PEAK 15(7Q31.2) MUTATED"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
  "AMP PEAK 15(7Q31.2) MUTATED"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-O8-A75V 
"AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK 15(7Q31.2) MUTATED"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "AMP PEAK 15(7Q31.2) MUTATED"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
  "AMP PEAK 15(7Q31.2) MUTATED"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
  "AMP PEAK 15(7Q31.2) MUTATED"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-O8-A75V 
"AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK 15(7Q31.2) MUTATED"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "AMP PEAK 15(7Q31.2) MUTATED"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
  "AMP PEAK 15(7Q31.2) MUTATED"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK 15(7Q31.2) WILD-TYPE" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "AMP PEAK 15(7Q31.2) MUTATED" "AMP PEAK 15(7Q31.2) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
  "AMP PEAK 15(7Q31.2) MUTATED"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK 15(7Q31.2) WILD-TYPE"   "AMP PEAK 15(7Q31.2) MUTATED" 
                   TCGA-O8-A75V 
"AMP PEAK 15(7Q31.2) WILD-TYPE" 
[1] "hr=" "1.2"
D15V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 15(7Q31.2) MUTATED        16       14         0         15
  AMP PEAK 15(7Q31.2) WILD-TYPE      42       22         2         15
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 15(7Q31.2) MUTATED            1          4        0         0
  AMP PEAK 15(7Q31.2) WILD-TYPE          3          1        1         1
                               vv
clus                            STAGE IVB
  AMP PEAK 15(7Q31.2) MUTATED           0
  AMP PEAK 15(7Q31.2) WILD-TYPE         2
D15V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 15(7Q31.2) MUTATED   17 17 17  2
  AMP PEAK 15(7Q31.2) WILD-TYPE 44 23 23  6
D15V4, multiclass
    clus
vv   AMP PEAK 15(7Q31.2) MUTATED AMP PEAK 15(7Q31.2) WILD-TYPE
  T1                          17                            44
  T2                          17                            23
  T3                          17                            23
  T4                           2                             6
D15V5, binary
                               cls
clus                             0  1
  AMP PEAK 15(7Q31.2) MUTATED   29  2
  AMP PEAK 15(7Q31.2) WILD-TYPE 68  1
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(7Q31.2) MUTATED     29    2
  AMP PEAK 15(7Q31.2) WILD-TYPE   68    1
   clus
vv  AMP PEAK 15(7Q31.2) MUTATED AMP PEAK 15(7Q31.2) WILD-TYPE
  0                          29                            68
  1                           2                             1
                               vv
clus                            M0 M1 MX
  AMP PEAK 15(7Q31.2) MUTATED   42  0 11
  AMP PEAK 15(7Q31.2) WILD-TYPE 73  3 20
D15V6, multiclass
    clus
vv   AMP PEAK 15(7Q31.2) MUTATED AMP PEAK 15(7Q31.2) WILD-TYPE
  M0                          42                            73
  M1                           0                             3
  MX                          11                            20
D15V7, binary
                               cls
clus                             0  1
  AMP PEAK 15(7Q31.2) MUTATED   22 31
  AMP PEAK 15(7Q31.2) WILD-TYPE 36 60
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(7Q31.2) MUTATED     22   31
  AMP PEAK 15(7Q31.2) WILD-TYPE   36   60
        clus
vv       AMP PEAK 15(7Q31.2) MUTATED AMP PEAK 15(7Q31.2) WILD-TYPE
  FEMALE                          22                            36
  MALE                            31                            60
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 15(7Q31.2) MUTATED   44  5  0  2
  AMP PEAK 15(7Q31.2) WILD-TYPE 78  6  1  8
D15V8, multiclass
    clus
vv   AMP PEAK 15(7Q31.2) MUTATED AMP PEAK 15(7Q31.2) WILD-TYPE
  R0                          44                            78
  R1                           5                             6
  R2                           0                             1
  RX                           2                             8

Clustering(16) Variable = AMP PEAK 16(8Q11.1) MUTATION ANALYSIS
D16V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 16(8Q11.1) MUTATED   33 24
  AMP PEAK 16(8Q11.1) WILD-TYPE 51 39
  AMP PEAK 16(8Q11.1) MUTATED AMP PEAK 16(8Q11.1) WILD-TYPE 
                           57                            90 
  AMP PEAK 16(8Q11.1) MUTATED AMP PEAK 16(8Q11.1) WILD-TYPE 
                           24                            39 
$`AMP PEAK 16(8Q11.1) MUTATED`
TCGA-BC-4072 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A3KF TCGA-BC-A69H TCGA-CC-5258 
       48.99        46.78        27.52         0.26         3.95         0.07 
TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A11A TCGA-DD-A11C 
        3.32         0.10         0.10         0.13         2.60        21.76 
TCGA-DD-A1E9 TCGA-DD-A1EC TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EI 
       90.71        19.79         6.71        12.95        45.11         6.02 
TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A1 TCGA-DD-A3A3 
       13.64        21.14         5.62        19.76         7.66        17.59 
TCGA-DD-A3A8 TCGA-DD-A4ND TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NN TCGA-DD-A4NO 
        0.36        73.38        18.44        39.78        29.56        61.45 
TCGA-DD-A4NQ TCGA-DD-A4NS TCGA-DD-A73G TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PZ 
       12.26        80.75       100.96        13.35         0.23         0.20 
TCGA-EP-A12J TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK 
       18.74        11.74        10.98         0.62         9.96        11.93 
TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25V TCGA-G3-A25W 
       22.85        14.40        60.36         0.39        28.27        30.74 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CJ TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-K7-A6G5 
       21.53        22.13        19.53        11.97         7.99         4.01 
TCGA-MI-A75E TCGA-MI-A75I TCGA-O8-A75V 
        5.10         8.71         4.44 

$`AMP PEAK 16(8Q11.1) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10X 
       27.91        37.32        10.13        27.52         2.99        25.32 
TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 
       23.34         1.12        69.57         5.03        44.42        13.84 
TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-BC-A69I TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 
       22.36         9.50         0.53         2.86         0.39         3.39 
TCGA-CC-5263 TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 
        4.24         0.07        79.73        37.78        83.57        53.33 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB 
      113.00         7.33         0.46        51.29        79.40        66.31 
TCGA-DD-A1ED TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A1EK TCGA-DD-A39X TCGA-DD-A3A0 
       75.65        49.15        29.16        18.35        55.69        25.81 
TCGA-DD-A3A2 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A9 
       70.06        20.12       102.74       107.11        13.78        30.61 
TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NL 
       33.14        12.85        14.07        14.24        15.06        56.25 
TCGA-DD-A4NP TCGA-DD-A4NR TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C 
       93.67         0.30        66.35        10.98         9.30         7.56 
TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A5KG 
       10.98         1.45        27.72        13.41        12.69        15.85 
TCGA-ED-A627 TCGA-ED-A7PX TCGA-ED-A7PY TCGA-ED-A7XP TCGA-ED-A82E TCGA-EP-A26S 
       13.91         0.20         0.20         0.20         0.20        19.99 
TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 
       32.45        19.10         0.20         8.12         6.38         0.13 
TCGA-FV-A495 TCGA-FV-A496 TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25X 
        0.03         0.33         1.22        51.06        53.79        58.49 
TCGA-G3-A25Y TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SM 
       14.86        25.64         5.92        19.23        14.70         4.37 
TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75G TCGA-NI-A4U2 
        7.76         1.02         0.49         9.57        14.24        58.88 

  AMP PEAK 16(8Q11.1) MUTATED AMP PEAK 16(8Q11.1) WILD-TYPE 
                         0.07                          0.03 
  AMP PEAK 16(8Q11.1) MUTATED AMP PEAK 16(8Q11.1) WILD-TYPE 
                       100.96                        113.00 
  AMP PEAK 16(8Q11.1) MUTATED AMP PEAK 16(8Q11.1) WILD-TYPE 
                        12.95                         14.47 
[1] "0.1 - 101.0 (12.9)" "0.0 - 113.0 (14.5)"
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-O8-A75V 
  "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-O8-A75V 
  "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
  "AMP PEAK 16(8Q11.1) MUTATED"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK 16(8Q11.1) WILD-TYPE"   "AMP PEAK 16(8Q11.1) MUTATED" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"AMP PEAK 16(8Q11.1) WILD-TYPE" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "AMP PEAK 16(8Q11.1) MUTATED" "AMP PEAK 16(8Q11.1) WILD-TYPE" 
                   TCGA-O8-A75V 
  "AMP PEAK 16(8Q11.1) MUTATED" 
[1] "hr=" "1.3"
D16V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 16(8Q11.1) MUTATED        28       10         0         15
  AMP PEAK 16(8Q11.1) WILD-TYPE      30       26         2         15
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 16(8Q11.1) MUTATED            1          1        0         0
  AMP PEAK 16(8Q11.1) WILD-TYPE          3          4        1         1
                               vv
clus                            STAGE IVB
  AMP PEAK 16(8Q11.1) MUTATED           0
  AMP PEAK 16(8Q11.1) WILD-TYPE         2
D16V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 16(8Q11.1) MUTATED   28 12 17  1
  AMP PEAK 16(8Q11.1) WILD-TYPE 33 28 23  7
D16V4, multiclass
    clus
vv   AMP PEAK 16(8Q11.1) MUTATED AMP PEAK 16(8Q11.1) WILD-TYPE
  T1                          28                            33
  T2                          12                            28
  T3                          17                            23
  T4                           1                             7
D16V5, binary
                               cls
clus                             0  1
  AMP PEAK 16(8Q11.1) MUTATED   35  0
  AMP PEAK 16(8Q11.1) WILD-TYPE 62  3
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(8Q11.1) MUTATED     35    0
  AMP PEAK 16(8Q11.1) WILD-TYPE   62    3
   clus
vv  AMP PEAK 16(8Q11.1) MUTATED AMP PEAK 16(8Q11.1) WILD-TYPE
  0                          35                            62
  1                           0                             3
                               vv
clus                            M0 M1 MX
  AMP PEAK 16(8Q11.1) MUTATED   45  0 13
  AMP PEAK 16(8Q11.1) WILD-TYPE 70  3 18
D16V6, multiclass
    clus
vv   AMP PEAK 16(8Q11.1) MUTATED AMP PEAK 16(8Q11.1) WILD-TYPE
  M0                          45                            70
  M1                           0                             3
  MX                          13                            18
D16V7, binary
                               cls
clus                             0  1
  AMP PEAK 16(8Q11.1) MUTATED   14 44
  AMP PEAK 16(8Q11.1) WILD-TYPE 44 47
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(8Q11.1) MUTATED     14   44
  AMP PEAK 16(8Q11.1) WILD-TYPE   44   47
        clus
vv       AMP PEAK 16(8Q11.1) MUTATED AMP PEAK 16(8Q11.1) WILD-TYPE
  FEMALE                          14                            44
  MALE                            44                            47
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 16(8Q11.1) MUTATED   46  5  0  4
  AMP PEAK 16(8Q11.1) WILD-TYPE 76  6  1  6
D16V8, multiclass
    clus
vv   AMP PEAK 16(8Q11.1) MUTATED AMP PEAK 16(8Q11.1) WILD-TYPE
  R0                          46                            76
  R1                           5                             6
  R2                           0                             1
  RX                           4                             6

Clustering(17) Variable = AMP PEAK 17(8Q24.21) MUTATION ANALYSIS
D17V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 17(8Q24.21) MUTATED   51 35
  AMP PEAK 17(8Q24.21) WILD-TYPE 33 28
  AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE 
                            86                             61 
  AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE 
                            35                             28 
$`AMP PEAK 17(8Q24.21) MUTATED`
TCGA-BC-4072 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A3KF 
       48.99        46.78        27.52        27.52         2.99         0.26 
TCGA-BC-A69H TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-A1HT TCGA-CC-A3M9 
        3.95         0.07         0.39         3.39         3.32         0.10 
TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A116 TCGA-DD-A118 
        0.07         0.10         0.13        79.73        53.33       113.00 
TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EC TCGA-DD-A1EE 
        7.33         2.60        21.76        90.71        19.79         6.71 
TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EI TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39X 
       12.95        45.11         6.02        13.64        21.14        55.69 
TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A1 TCGA-DD-A3A3 TCGA-DD-A3A7 TCGA-DD-A3A8 
        5.62        19.76         7.66        17.59        13.78         0.36 
TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NN 
       73.38        14.07        18.44        15.06        39.78        29.56 
TCGA-DD-A4NO TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A73A TCGA-DD-A73D 
       61.45        12.26         0.30        80.75        10.98        10.98 
TCGA-DD-A73G TCGA-ED-A459 TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PY TCGA-ED-A7PZ 
      100.96        13.41        13.35         0.23         0.20         0.20 
TCGA-ED-A7XP TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC 
        0.20         0.20        18.74        11.74        10.98         0.62 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A3I0 TCGA-FV-A3I1 
        9.96        11.93        22.85        14.40         0.20         8.12 
TCGA-FV-A3R2 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V 
        6.38        60.36         0.39        51.06        53.79        28.27 
TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CJ 
       30.74        58.49        21.53        22.13        25.64        19.53 
TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-K7-A6G5 TCGA-MI-A75C TCGA-MI-A75E 
       14.70        11.97         7.99         4.01         9.57         5.10 
TCGA-MI-A75I TCGA-O8-A75V 
        8.71         4.44 

$`AMP PEAK 17(8Q24.21) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z 
       27.91        37.32        10.13        25.32        23.34         1.12 
TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG TCGA-BC-A5W4 
       69.57         5.03        44.42        13.84        22.36         9.50 
TCGA-BC-A69I TCGA-CC-5260 TCGA-CC-5263 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A11B 
        0.53         2.86         4.24        37.78        83.57         0.46 
TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1ED TCGA-DD-A1EH TCGA-DD-A1EJ 
       51.29        79.40        66.31        75.65        49.15        29.16 
TCGA-DD-A1EK TCGA-DD-A3A0 TCGA-DD-A3A2 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 
       18.35        25.81        70.06        20.12       102.74       107.11 
TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4NH TCGA-DD-A4NL TCGA-DD-A4NP 
       30.61        33.14        12.85        14.24        56.25        93.67 
TCGA-DD-A4NV TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73E TCGA-DD-A73F TCGA-ED-A4XI 
       66.35         9.30         7.56         1.45        27.72        12.69 
TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A7PX TCGA-EP-A26S TCGA-FV-A23B TCGA-FV-A2QR 
       15.85        13.91         0.20        19.99        32.45        19.10 
TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-G3-A25S TCGA-G3-A25Y TCGA-G3-A3CI 
        0.13         0.03         0.33         1.22        14.86         5.92 
TCGA-G3-A3CK TCGA-G3-A5SM TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-LG-A6GG TCGA-MI-A75G 
       19.23         4.37         7.76         1.02         0.49        14.24 
TCGA-NI-A4U2 
       58.88 

  AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE 
                          0.07                           0.03 
  AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE 
                        113.00                         107.11 
  AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE 
                        12.605                         19.100 
[1] "0.1 - 113.0 (12.6)" "0.0 - 107.1 (19.1)"
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-O8-A75V 
  "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-O8-A75V 
  "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "AMP PEAK 17(8Q24.21) MUTATED"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK 17(8Q24.21) WILD-TYPE" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK 17(8Q24.21) WILD-TYPE"   "AMP PEAK 17(8Q24.21) MUTATED" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "AMP PEAK 17(8Q24.21) MUTATED" "AMP PEAK 17(8Q24.21) WILD-TYPE" 
                    TCGA-O8-A75V 
  "AMP PEAK 17(8Q24.21) MUTATED" 
[1] "hr=" "1.2"
D17V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 17(8Q24.21) MUTATED        35       22         0         20
  AMP PEAK 17(8Q24.21) WILD-TYPE      23       14         2         10
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 17(8Q24.21) MUTATED            2          2        1         1
  AMP PEAK 17(8Q24.21) WILD-TYPE          2          3        0         0
                                vv
clus                             STAGE IVB
  AMP PEAK 17(8Q24.21) MUTATED           0
  AMP PEAK 17(8Q24.21) WILD-TYPE         2
D17V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 17(8Q24.21) MUTATED   36 24 24  4
  AMP PEAK 17(8Q24.21) WILD-TYPE 25 16 16  4
D17V4, multiclass
    clus
vv   AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE
  T1                           36                             25
  T2                           24                             16
  T3                           24                             16
  T4                            4                              4
D17V5, binary
                                cls
clus                              0  1
  AMP PEAK 17(8Q24.21) MUTATED   57  1
  AMP PEAK 17(8Q24.21) WILD-TYPE 40  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(8Q24.21) MUTATED     57    1
  AMP PEAK 17(8Q24.21) WILD-TYPE   40    2
   clus
vv  AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE
  0                           57                             40
  1                            1                              2
                                vv
clus                             M0 M1 MX
  AMP PEAK 17(8Q24.21) MUTATED   68  1 19
  AMP PEAK 17(8Q24.21) WILD-TYPE 47  2 12
D17V6, multiclass
    clus
vv   AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE
  M0                           68                             47
  M1                            1                              2
  MX                           19                             12
D17V7, binary
                                cls
clus                              0  1
  AMP PEAK 17(8Q24.21) MUTATED   27 61
  AMP PEAK 17(8Q24.21) WILD-TYPE 31 30
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(8Q24.21) MUTATED     27   61
  AMP PEAK 17(8Q24.21) WILD-TYPE   31   30
        clus
vv       AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE
  FEMALE                           27                             31
  MALE                             61                             30
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 17(8Q24.21) MUTATED   71  7  1  5
  AMP PEAK 17(8Q24.21) WILD-TYPE 51  4  0  5
D17V8, multiclass
    clus
vv   AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE
  R0                           71                             51
  R1                            7                              4
  R2                            1                              0
  RX                            5                              5

Clustering(18) Variable = AMP PEAK 18(9Q34.2) MUTATION ANALYSIS
D18V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 18(9Q34.2) MUTATED    8 10
  AMP PEAK 18(9Q34.2) WILD-TYPE 76 53
  AMP PEAK 18(9Q34.2) MUTATED AMP PEAK 18(9Q34.2) WILD-TYPE 
                           18                           129 
  AMP PEAK 18(9Q34.2) MUTATED AMP PEAK 18(9Q34.2) WILD-TYPE 
                           10                            53 
$`AMP PEAK 18(9Q34.2) MUTATED`
TCGA-BC-A10T TCGA-BC-A10Y TCGA-CC-5261 TCGA-CC-5263 TCGA-DD-A1EG TCGA-DD-A3A0 
       27.52        23.34         0.39         4.24        45.11        25.81 
TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A4NV TCGA-DD-A73G TCGA-ED-A66Y TCGA-ED-A82E 
      102.74       107.11        66.35       100.96         0.23         0.20 
TCGA-EP-A2KB TCGA-ES-A2HS TCGA-FV-A495 TCGA-FV-A4ZP TCGA-G3-A25U TCGA-G3-A3CG 
       10.98        22.85         0.03        60.36        53.79        22.13 

$`AMP PEAK 18(9Q34.2) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U 
       48.99        27.91        37.32        10.13        46.78        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
        2.99        25.32         1.12        69.57         5.03        44.42 
TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-BC-A69H TCGA-BC-A69I 
       13.84         0.26        22.36         9.50         3.95         0.53 
TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5262 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA 
        0.07         2.86         3.39         3.32         0.10         0.07 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 
        0.10         0.13        79.73        37.78        83.57        53.33 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D 
      113.00         7.33         2.60         0.46        21.76        51.29 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       90.71        79.40        66.31        19.79        75.65         6.71 
TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EK TCGA-DD-A1EL 
       12.95        49.15         6.02        29.16        18.35        13.64 
TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A1 TCGA-DD-A3A2 
       21.14        55.69         5.62        19.76         7.66        70.06 
TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA 
       17.59        20.12        13.78         0.36        30.61        33.14 
TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ 
       12.85        73.38        14.07        14.24        18.44        15.06 
TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ 
       39.78        56.25        29.56        61.45        93.67        12.26 
TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D 
        0.30        80.75        10.98         9.30         7.56        10.98 
TCGA-DD-A73E TCGA-DD-A73F TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 
        1.45        27.72        13.41        12.69        15.85        13.91 
TCGA-ED-A66X TCGA-ED-A7PX TCGA-ED-A7PY TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-EP-A12J 
       13.35         0.20         0.20         0.20         0.20        18.74 
TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT 
       19.99        11.74         0.62         9.96        11.93        14.40 
TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 
       32.45        19.10         0.20         8.12         6.38         0.13 
TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25W 
        0.33         0.39         1.22        51.06        28.27        30.74 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ 
       58.49        14.86        21.53        25.64         5.92        19.53 
TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM TCGA-G3-A6UC 
       19.23        14.70        11.97         7.99         4.37         7.76 
TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75G 
        1.02         4.01         0.49         9.57         5.10        14.24 
TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
        8.71        58.88         4.44 

  AMP PEAK 18(9Q34.2) MUTATED AMP PEAK 18(9Q34.2) WILD-TYPE 
                         0.03                          0.07 
  AMP PEAK 18(9Q34.2) MUTATED AMP PEAK 18(9Q34.2) WILD-TYPE 
                       107.11                        113.00 
  AMP PEAK 18(9Q34.2) MUTATED AMP PEAK 18(9Q34.2) WILD-TYPE 
                       24.575                        13.780 
[1] "0.0 - 107.1 (24.6)" "0.1 - 113.0 (13.8)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 18(9Q34.2) WILD-TYPE"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 18(9Q34.2) WILD-TYPE"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK 18(9Q34.2) WILD-TYPE"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK 18(9Q34.2) WILD-TYPE"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK 18(9Q34.2) MUTATED"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK 18(9Q34.2) WILD-TYPE"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK 18(9Q34.2) WILD-TYPE"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-O8-A75V 
"AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 18(9Q34.2) WILD-TYPE"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 18(9Q34.2) WILD-TYPE"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK 18(9Q34.2) WILD-TYPE"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK 18(9Q34.2) WILD-TYPE"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK 18(9Q34.2) MUTATED"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK 18(9Q34.2) WILD-TYPE"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK 18(9Q34.2) WILD-TYPE"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-O8-A75V 
"AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 18(9Q34.2) WILD-TYPE"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 18(9Q34.2) WILD-TYPE"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"AMP PEAK 18(9Q34.2) WILD-TYPE"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK 18(9Q34.2) WILD-TYPE"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK 18(9Q34.2) MUTATED"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"AMP PEAK 18(9Q34.2) WILD-TYPE"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"AMP PEAK 18(9Q34.2) WILD-TYPE"   "AMP PEAK 18(9Q34.2) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 18(9Q34.2) MUTATED" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"AMP PEAK 18(9Q34.2) WILD-TYPE" "AMP PEAK 18(9Q34.2) WILD-TYPE" 
                   TCGA-O8-A75V 
"AMP PEAK 18(9Q34.2) WILD-TYPE" 
[1] "hr=" "1.3"
D18V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 18(9Q34.2) MUTATED         7        3         1          6
  AMP PEAK 18(9Q34.2) WILD-TYPE      51       33         1         24
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 18(9Q34.2) MUTATED            0          0        0         1
  AMP PEAK 18(9Q34.2) WILD-TYPE          4          5        1         0
                               vv
clus                            STAGE IVB
  AMP PEAK 18(9Q34.2) MUTATED           0
  AMP PEAK 18(9Q34.2) WILD-TYPE         2
D18V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 18(9Q34.2) MUTATED    8  3  7  2
  AMP PEAK 18(9Q34.2) WILD-TYPE 53 37 33  6
D18V4, multiclass
    clus
vv   AMP PEAK 18(9Q34.2) MUTATED AMP PEAK 18(9Q34.2) WILD-TYPE
  T1                           8                            53
  T2                           3                            37
  T3                           7                            33
  T4                           2                             6
D18V5, binary
                               cls
clus                             0  1
  AMP PEAK 18(9Q34.2) MUTATED   12  1
  AMP PEAK 18(9Q34.2) WILD-TYPE 85  2
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 18(9Q34.2) MUTATED     12    1
  AMP PEAK 18(9Q34.2) WILD-TYPE   85    2
   clus
vv  AMP PEAK 18(9Q34.2) MUTATED AMP PEAK 18(9Q34.2) WILD-TYPE
  0                          12                            85
  1                           1                             2
                               vv
clus                             M0  M1  MX
  AMP PEAK 18(9Q34.2) MUTATED    15   0   5
  AMP PEAK 18(9Q34.2) WILD-TYPE 100   3  26
D18V6, multiclass
    clus
vv   AMP PEAK 18(9Q34.2) MUTATED AMP PEAK 18(9Q34.2) WILD-TYPE
  M0                          15                           100
  M1                           0                             3
  MX                           5                            26
D18V7, binary
                               cls
clus                             0  1
  AMP PEAK 18(9Q34.2) MUTATED    8 12
  AMP PEAK 18(9Q34.2) WILD-TYPE 50 79
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 18(9Q34.2) MUTATED      8   12
  AMP PEAK 18(9Q34.2) WILD-TYPE   50   79
        clus
vv       AMP PEAK 18(9Q34.2) MUTATED AMP PEAK 18(9Q34.2) WILD-TYPE
  FEMALE                           8                            50
  MALE                            12                            79
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK 18(9Q34.2) MUTATED    14   3   0   3
  AMP PEAK 18(9Q34.2) WILD-TYPE 108   8   1   7
D18V8, multiclass
    clus
vv   AMP PEAK 18(9Q34.2) MUTATED AMP PEAK 18(9Q34.2) WILD-TYPE
  R0                          14                           108
  R1                           3                             8
  R2                           0                             1
  RX                           3                             7

Clustering(19) Variable = AMP PEAK 19(10P15.1) MUTATION ANALYSIS
D19V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 19(10P15.1) MUTATED   16 13
  AMP PEAK 19(10P15.1) WILD-TYPE 68 50
  AMP PEAK 19(10P15.1) MUTATED AMP PEAK 19(10P15.1) WILD-TYPE 
                            29                            118 
  AMP PEAK 19(10P15.1) MUTATED AMP PEAK 19(10P15.1) WILD-TYPE 
                            13                             50 
$`AMP PEAK 19(10P15.1) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A217 TCGA-CC-A3MA TCGA-CC-A3MB 
       37.32        10.13        27.52        13.84         0.07         0.10 
TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A3A7 TCGA-DD-A3A9 
       79.73        37.78        18.35        13.64        13.78        30.61 
TCGA-DD-A4NQ TCGA-DD-A4NV TCGA-DD-A73D TCGA-DD-A73G TCGA-ED-A459 TCGA-ED-A66X 
       12.26        66.35        10.98       100.96        13.41        13.35 
TCGA-ED-A66Y TCGA-ED-A82E TCGA-EP-A2KA TCGA-EP-A2KB TCGA-ES-A2HS TCGA-FV-A4ZQ 
        0.23         0.20        11.74        10.98        22.85         0.39 
TCGA-G3-A25X TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM TCGA-GJ-A6C0 
       58.49        11.97         7.99         4.37         1.02 

$`AMP PEAK 19(10P15.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X 
       48.99        27.91        46.78        27.52         2.99        25.32 
TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A3KF 
       23.34         1.12        69.57         5.03        44.42         0.26 
TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5260 
       22.36         9.50         3.95         0.53         0.07         2.86 
TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MC 
        0.39         3.39         4.24         3.32         0.10         0.13 
TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B 
       83.57        53.33       113.00         7.33         2.60         0.46 
TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC 
       21.76        51.29        90.71        79.40        66.31        19.79 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EI 
       75.65         6.71        12.95        45.11        49.15         6.02 
TCGA-DD-A1EJ TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 
       29.16        21.14        55.69         5.62        19.76        25.81 
TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 
        7.66        70.06        17.59        20.12       102.74       107.11 
TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH 
        0.36        33.14        12.85        73.38        14.07        14.24 
TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO 
       18.44        15.06        39.78        56.25        29.56        61.45 
TCGA-DD-A4NP TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C 
       93.67         0.30        80.75        10.98         9.30         7.56 
TCGA-DD-A73E TCGA-DD-A73F TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A7PX 
        1.45        27.72        12.69        15.85        13.91         0.20 
TCGA-ED-A7PY TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KC 
        0.20         0.20         0.20        18.74        19.99         0.62 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 
        9.96        11.93        14.40        32.45        19.10         0.20 
TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP 
        8.12         6.38         0.13         0.03         0.33        60.36 
TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y 
        1.22        51.06        53.79        28.27        30.74        14.86 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
       21.53        22.13        25.64         5.92        19.53        19.23 
TCGA-G3-A5SI TCGA-G3-A6UC TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E 
       14.70         7.76         4.01         0.49         9.57         5.10 
TCGA-MI-A75G TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
       14.24         8.71        58.88         4.44 

  AMP PEAK 19(10P15.1) MUTATED AMP PEAK 19(10P15.1) WILD-TYPE 
                          0.07                           0.03 
  AMP PEAK 19(10P15.1) MUTATED AMP PEAK 19(10P15.1) WILD-TYPE 
                        100.96                         113.00 
  AMP PEAK 19(10P15.1) MUTATED AMP PEAK 19(10P15.1) WILD-TYPE 
                         13.35                          14.78 
[1] "0.1 - 101.0 (13.3)" "0.0 - 113.0 (14.8)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 19(10P15.1) MUTATED"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 19(10P15.1) MUTATED"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "AMP PEAK 19(10P15.1) MUTATED"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "AMP PEAK 19(10P15.1) MUTATED"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-O8-A75V 
"AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 19(10P15.1) MUTATED"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 19(10P15.1) MUTATED"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "AMP PEAK 19(10P15.1) MUTATED"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "AMP PEAK 19(10P15.1) MUTATED"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-O8-A75V 
"AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 19(10P15.1) MUTATED"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 19(10P15.1) MUTATED"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "AMP PEAK 19(10P15.1) MUTATED"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 19(10P15.1) WILD-TYPE"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "AMP PEAK 19(10P15.1) MUTATED"   "AMP PEAK 19(10P15.1) MUTATED" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "AMP PEAK 19(10P15.1) MUTATED" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK 19(10P15.1) WILD-TYPE" "AMP PEAK 19(10P15.1) WILD-TYPE" 
                    TCGA-O8-A75V 
"AMP PEAK 19(10P15.1) WILD-TYPE" 
[1] "hr=" "1.3"
D19V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 19(10P15.1) MUTATED         5       10         0          9
  AMP PEAK 19(10P15.1) WILD-TYPE      53       26         2         21
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 19(10P15.1) MUTATED            1          0        0         0
  AMP PEAK 19(10P15.1) WILD-TYPE          3          5        1         1
                                vv
clus                             STAGE IVB
  AMP PEAK 19(10P15.1) MUTATED           2
  AMP PEAK 19(10P15.1) WILD-TYPE         0
D19V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 19(10P15.1) MUTATED    5 11 11  3
  AMP PEAK 19(10P15.1) WILD-TYPE 56 29 29  5
D19V4, multiclass
    clus
vv   AMP PEAK 19(10P15.1) MUTATED AMP PEAK 19(10P15.1) WILD-TYPE
  T1                            5                             56
  T2                           11                             29
  T3                           11                             29
  T4                            3                              5
D19V5, binary
                                cls
clus                              0  1
  AMP PEAK 19(10P15.1) MUTATED   16  0
  AMP PEAK 19(10P15.1) WILD-TYPE 81  3
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(10P15.1) MUTATED     16    0
  AMP PEAK 19(10P15.1) WILD-TYPE   81    3
   clus
vv  AMP PEAK 19(10P15.1) MUTATED AMP PEAK 19(10P15.1) WILD-TYPE
  0                           16                             81
  1                            0                              3
                                vv
clus                             M0 M1 MX
  AMP PEAK 19(10P15.1) MUTATED   20  2  8
  AMP PEAK 19(10P15.1) WILD-TYPE 95  1 23
D19V6, multiclass
    clus
vv   AMP PEAK 19(10P15.1) MUTATED AMP PEAK 19(10P15.1) WILD-TYPE
  M0                           20                             95
  M1                            2                              1
  MX                            8                             23
D19V7, binary
                                cls
clus                              0  1
  AMP PEAK 19(10P15.1) MUTATED   13 17
  AMP PEAK 19(10P15.1) WILD-TYPE 45 74
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(10P15.1) MUTATED     13   17
  AMP PEAK 19(10P15.1) WILD-TYPE   45   74
        clus
vv       AMP PEAK 19(10P15.1) MUTATED AMP PEAK 19(10P15.1) WILD-TYPE
  FEMALE                           13                             45
  MALE                             17                             74
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 19(10P15.1) MUTATED   26  2  0  2
  AMP PEAK 19(10P15.1) WILD-TYPE 96  9  1  8
D19V8, multiclass
    clus
vv   AMP PEAK 19(10P15.1) MUTATED AMP PEAK 19(10P15.1) WILD-TYPE
  R0                           26                             96
  R1                            2                              9
  R2                            0                              1
  RX                            2                              8

Clustering(20) Variable = AMP PEAK 20(11Q13.3) MUTATION ANALYSIS
D20V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 20(11Q13.3) MUTATED   19  8
  AMP PEAK 20(11Q13.3) WILD-TYPE 65 55
  AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE 
                            27                            120 
  AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE 
                             8                             55 
$`AMP PEAK 20(11Q13.3) MUTATED`
TCGA-BC-4073 TCGA-BC-A10T TCGA-BC-A3KG TCGA-BC-A69I TCGA-CC-A3M9 TCGA-CC-A3MB 
       27.91        27.52        22.36         0.53         0.10         0.10 
TCGA-DD-A115 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A1EB TCGA-DD-A39Y TCGA-DD-A3A0 
       83.57         7.33         2.60        66.31         5.62        25.81 
TCGA-DD-A4ND TCGA-DD-A4NN TCGA-DD-A4NV TCGA-DD-A73E TCGA-DD-A73G TCGA-ED-A66Y 
       73.38        29.56        66.35         1.45       100.96         0.23 
TCGA-ED-A82E TCGA-EP-A2KA TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25W 
        0.20        11.74         0.33         0.39         1.22        30.74 
TCGA-G3-A3CG TCGA-G3-A5SJ TCGA-LG-A6GG 
       22.13        11.97         0.49 

$`AMP PEAK 20(11Q13.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W 
       48.99        37.32        10.13        46.78        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
       25.32        23.34         1.12        69.57         5.03        44.42 
TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-BC-A69H TCGA-CC-5258 TCGA-CC-5260 
       13.84         0.26         9.50         3.95         0.07         2.86 
TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3MA TCGA-CC-A3MC 
        0.39         3.39         4.24         3.32         0.07         0.13 
TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A11B TCGA-DD-A11C 
       79.73        37.78        53.33       113.00         0.46        21.76 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       51.29        90.71        79.40        19.79        75.65         6.71 
TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EK 
       12.95        45.11        49.15         6.02        29.16        18.35 
TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Z TCGA-DD-A3A1 TCGA-DD-A3A2 
       13.64        21.14        55.69        19.76         7.66        70.06 
TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 
       17.59        20.12       102.74       107.11        13.78         0.36 
TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NI 
       30.61        33.14        12.85        14.07        14.24        18.44 
TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ 
       15.06        39.78        56.25        61.45        93.67        12.26 
TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D 
        0.30        80.75        10.98         9.30         7.56        10.98 
TCGA-DD-A73F TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X 
       27.72        13.41        12.69        15.85        13.91        13.35 
TCGA-ED-A7PX TCGA-ED-A7PY TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-EP-A12J TCGA-EP-A26S 
        0.20         0.20         0.20         0.20        18.74        19.99 
TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT 
       10.98         0.62         9.96        11.93        22.85        14.40 
TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 
       32.45        19.10         0.20         8.12         6.38         0.13 
TCGA-FV-A495 TCGA-FV-A4ZP TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25X 
        0.03        60.36        51.06        53.79        28.27        58.49 
TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
       14.86        21.53        25.64         5.92        19.53        19.23 
TCGA-G3-A5SI TCGA-G3-A5SL TCGA-G3-A5SM TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-K7-A6G5 
       14.70         7.99         4.37         7.76         1.02         4.01 
TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75G TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
        9.57         5.10        14.24         8.71        58.88         4.44 

  AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE 
                          0.10                           0.03 
  AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE 
                        100.96                         113.00 
  AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE 
                         11.74                          14.24 
[1] "0.1 - 101.0 (11.7)" "0.0 - 113.0 (14.2)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-O8-A75V 
"AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-O8-A75V 
"AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"AMP PEAK 20(11Q13.3) WILD-TYPE"   "AMP PEAK 20(11Q13.3) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
  "AMP PEAK 20(11Q13.3) MUTATED" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK 20(11Q13.3) WILD-TYPE" "AMP PEAK 20(11Q13.3) WILD-TYPE" 
                    TCGA-O8-A75V 
"AMP PEAK 20(11Q13.3) WILD-TYPE" 
[1] "hr=" "1.4"
D20V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 20(11Q13.3) MUTATED        14        2         0          9
  AMP PEAK 20(11Q13.3) WILD-TYPE      44       34         2         21
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 20(11Q13.3) MUTATED            1          0        1         0
  AMP PEAK 20(11Q13.3) WILD-TYPE          3          5        0         1
                                vv
clus                             STAGE IVB
  AMP PEAK 20(11Q13.3) MUTATED           0
  AMP PEAK 20(11Q13.3) WILD-TYPE         2
D20V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 20(11Q13.3) MUTATED   14  2 11  1
  AMP PEAK 20(11Q13.3) WILD-TYPE 47 38 29  7
D20V4, multiclass
    clus
vv   AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE
  T1                           14                             47
  T2                            2                             38
  T3                           11                             29
  T4                            1                              7
D20V5, binary
                                cls
clus                              0  1
  AMP PEAK 20(11Q13.3) MUTATED   20  0
  AMP PEAK 20(11Q13.3) WILD-TYPE 77  3
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(11Q13.3) MUTATED     20    0
  AMP PEAK 20(11Q13.3) WILD-TYPE   77    3
   clus
vv  AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE
  0                           20                             77
  1                            0                              3
                                vv
clus                             M0 M1 MX
  AMP PEAK 20(11Q13.3) MUTATED   24  1  3
  AMP PEAK 20(11Q13.3) WILD-TYPE 91  2 28
D20V6, multiclass
    clus
vv   AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE
  M0                           24                             91
  M1                            1                              2
  MX                            3                             28
D20V7, binary
                                cls
clus                              0  1
  AMP PEAK 20(11Q13.3) MUTATED   11 17
  AMP PEAK 20(11Q13.3) WILD-TYPE 47 74
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(11Q13.3) MUTATED     11   17
  AMP PEAK 20(11Q13.3) WILD-TYPE   47   74
        clus
vv       AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE
  FEMALE                           11                             47
  MALE                             17                             74
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 20(11Q13.3) MUTATED    22   4   1   1
  AMP PEAK 20(11Q13.3) WILD-TYPE 100   7   0   9
D20V8, multiclass
    clus
vv   AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE
  R0                           22                            100
  R1                            4                              7
  R2                            1                              0
  RX                            1                              9

Clustering(21) Variable = AMP PEAK 21(13Q32.3) MUTATION ANALYSIS
D21V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 21(13Q32.3) MUTATED   11 12
  AMP PEAK 21(13Q32.3) WILD-TYPE 73 51
  AMP PEAK 21(13Q32.3) MUTATED AMP PEAK 21(13Q32.3) WILD-TYPE 
                            23                            124 
  AMP PEAK 21(13Q32.3) MUTATED AMP PEAK 21(13Q32.3) WILD-TYPE 
                            12                             51 
$`AMP PEAK 21(13Q32.3) MUTATED`
TCGA-BC-A10W TCGA-BC-A10Z TCGA-BC-A216 TCGA-BC-A3KF TCGA-CC-5258 TCGA-CC-5261 
        2.99         1.12        44.42         0.26         0.07         0.39 
TCGA-CC-5263 TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EG 
        4.24         0.07        79.73         2.60        21.76        45.11 
TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A7 TCGA-ED-A7PY 
       29.16        13.64        55.69         5.62        13.78         0.20 
TCGA-EP-A2KA TCGA-EP-A3JL TCGA-FV-A23B TCGA-FV-A3I0 TCGA-FV-A496 
       11.74         9.96        32.45         0.20         0.33 

$`AMP PEAK 21(13Q32.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
       48.99        27.91        37.32        10.13        46.78        27.52 
TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A217 
       27.52        25.32        23.34        69.57         5.03        13.84 
TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5260 TCGA-CC-5262 
       22.36         9.50         3.95         0.53         2.86         3.39 
TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 
        3.32         0.10         0.10         0.13        37.78        83.57 
TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1E9 
       53.33       113.00         7.33         0.46        51.29        90.71 
TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF 
       79.40        66.31        19.79        75.65         6.71        12.95 
TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EK TCGA-DD-A39V TCGA-DD-A39Z TCGA-DD-A3A0 
       49.15         6.02        18.35        21.14        19.76        25.81 
TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 
        7.66        70.06        17.59        20.12       102.74       107.11 
TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF 
        0.36        30.61        33.14        12.85        73.38        14.07 
TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN 
       14.24        18.44        15.06        39.78        56.25        29.56 
TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV 
       61.45        93.67        12.26         0.30        80.75        66.35 
TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F 
       10.98         9.30         7.56        10.98         1.45        27.72 
TCGA-DD-A73G TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X 
      100.96        13.41        12.69        15.85        13.91        13.35 
TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-ED-A82E TCGA-EP-A12J 
        0.23         0.20         0.20         0.20         0.20        18.74 
TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT 
       19.99        10.98         0.62        11.93        22.85        14.40 
TCGA-FV-A2QR TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A4ZP 
       19.10         8.12         6.38         0.13         0.03        60.36 
TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W 
        0.39         1.22        51.06        53.79        28.27        30.74 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
       58.49        14.86        21.53        22.13        25.64         5.92 
TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM 
       19.53        19.23        14.70        11.97         7.99         4.37 
TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E 
        7.76         1.02         4.01         0.49         9.57         5.10 
TCGA-MI-A75G TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
       14.24         8.71        58.88         4.44 

  AMP PEAK 21(13Q32.3) MUTATED AMP PEAK 21(13Q32.3) WILD-TYPE 
                          0.07                           0.03 
  AMP PEAK 21(13Q32.3) MUTATED AMP PEAK 21(13Q32.3) WILD-TYPE 
                         79.73                         113.00 
  AMP PEAK 21(13Q32.3) MUTATED AMP PEAK 21(13Q32.3) WILD-TYPE 
                          5.62                          14.78 
[1] "0.1 - 79.7 (5.6)"   "0.0 - 113.0 (14.8)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "AMP PEAK 21(13Q32.3) MUTATED"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-O8-A75V 
"AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "AMP PEAK 21(13Q32.3) MUTATED"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-O8-A75V 
"AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "AMP PEAK 21(13Q32.3) MUTATED"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "AMP PEAK 21(13Q32.3) MUTATED" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 21(13Q32.3) WILD-TYPE"   "AMP PEAK 21(13Q32.3) MUTATED" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK 21(13Q32.3) WILD-TYPE" "AMP PEAK 21(13Q32.3) WILD-TYPE" 
                    TCGA-O8-A75V 
"AMP PEAK 21(13Q32.3) WILD-TYPE" 
[1] "hr=" "2.1"
D21V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 21(13Q32.3) MUTATED         9        7         0          4
  AMP PEAK 21(13Q32.3) WILD-TYPE      49       29         2         26
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 21(13Q32.3) MUTATED            1          1        0         0
  AMP PEAK 21(13Q32.3) WILD-TYPE          3          4        1         1
                                vv
clus                             STAGE IVB
  AMP PEAK 21(13Q32.3) MUTATED           0
  AMP PEAK 21(13Q32.3) WILD-TYPE         2
D21V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 21(13Q32.3) MUTATED   10  7  5  1
  AMP PEAK 21(13Q32.3) WILD-TYPE 51 33 35  7
D21V4, multiclass
    clus
vv   AMP PEAK 21(13Q32.3) MUTATED AMP PEAK 21(13Q32.3) WILD-TYPE
  T1                           10                             51
  T2                            7                             33
  T3                            5                             35
  T4                            1                              7
D21V5, binary
                                cls
clus                              0  1
  AMP PEAK 21(13Q32.3) MUTATED   12  1
  AMP PEAK 21(13Q32.3) WILD-TYPE 85  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(13Q32.3) MUTATED     12    1
  AMP PEAK 21(13Q32.3) WILD-TYPE   85    2
   clus
vv  AMP PEAK 21(13Q32.3) MUTATED AMP PEAK 21(13Q32.3) WILD-TYPE
  0                           12                             85
  1                            1                              2
                                vv
clus                             M0 M1 MX
  AMP PEAK 21(13Q32.3) MUTATED   19  0  4
  AMP PEAK 21(13Q32.3) WILD-TYPE 96  3 27
D21V6, multiclass
    clus
vv   AMP PEAK 21(13Q32.3) MUTATED AMP PEAK 21(13Q32.3) WILD-TYPE
  M0                           19                             96
  M1                            0                              3
  MX                            4                             27
D21V7, binary
                                cls
clus                              0  1
  AMP PEAK 21(13Q32.3) MUTATED   11 12
  AMP PEAK 21(13Q32.3) WILD-TYPE 47 79
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(13Q32.3) MUTATED     11   12
  AMP PEAK 21(13Q32.3) WILD-TYPE   47   79
        clus
vv       AMP PEAK 21(13Q32.3) MUTATED AMP PEAK 21(13Q32.3) WILD-TYPE
  FEMALE                           11                             47
  MALE                             12                             79
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 21(13Q32.3) MUTATED    17   1   0   4
  AMP PEAK 21(13Q32.3) WILD-TYPE 105  10   1   6
D21V8, multiclass
    clus
vv   AMP PEAK 21(13Q32.3) MUTATED AMP PEAK 21(13Q32.3) WILD-TYPE
  R0                           17                            105
  R1                            1                             10
  R2                            0                              1
  RX                            4                              6

Clustering(22) Variable = AMP PEAK 22(15Q26.3) MUTATION ANALYSIS
D22V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 22(15Q26.3) MUTATED   17  9
  AMP PEAK 22(15Q26.3) WILD-TYPE 67 54
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                            26                            121 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                             9                             54 
$`AMP PEAK 22(15Q26.3) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10Y TCGA-BC-A217 TCGA-BC-A3KF TCGA-CC-5262 TCGA-CC-5263 
       37.32        23.34        13.84         0.26         3.39         4.24 
TCGA-CC-A3M9 TCGA-DD-A11A TCGA-DD-A39Z TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NV 
        0.10         2.60        19.76        18.44        15.06        66.35 
TCGA-DD-A73G TCGA-ED-A5KG TCGA-ED-A66X TCGA-ED-A7PZ TCGA-EP-A2KA TCGA-ES-A2HS 
      100.96        15.85        13.35         0.20        11.74        22.85 
TCGA-FV-A23B TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25Y TCGA-G3-A3CH TCGA-G3-A6UC 
       32.45         0.39        51.06        14.86        25.64         7.76 
TCGA-MI-A75G TCGA-O8-A75V 
       14.24         4.44 

$`AMP PEAK 22(15Q26.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U 
       48.99        27.91        10.13        46.78        27.52        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
        2.99        25.32         1.12        69.57         5.03        44.42 
TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5260 
       22.36         9.50         3.95         0.53         0.07         2.86 
TCGA-CC-5261 TCGA-CC-A1HT TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 
        0.39         3.32         0.07         0.10         0.13        79.73 
TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B 
       37.78        83.57        53.33       113.00         7.33         0.46 
TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC 
       21.76        51.29        90.71        79.40        66.31        19.79 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EI 
       75.65         6.71        12.95        45.11        49.15         6.02 
TCGA-DD-A1EJ TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Y 
       29.16        18.35        13.64        21.14        55.69         5.62 
TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 
       25.81         7.66        70.06        17.59        20.12       102.74 
TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NB 
      107.11        13.78         0.36        30.61        33.14        12.85 
TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN 
       73.38        14.07        14.24        39.78        56.25        29.56 
TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A73A 
       61.45        93.67        12.26         0.30        80.75        10.98 
TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F TCGA-ED-A459 
        9.30         7.56        10.98         1.45        27.72        13.41 
TCGA-ED-A4XI TCGA-ED-A627 TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7PY TCGA-ED-A7XP 
       12.69        13.91         0.23         0.20         0.20         0.20 
TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
        0.20        18.74        19.99        10.98         0.62         9.96 
TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R2 
       11.93        14.40        19.10         0.20         8.12         6.38 
TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25U 
        0.13         0.03         0.33        60.36         1.22        53.79 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CI 
       28.27        30.74        58.49        21.53        22.13         5.92 
TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM 
       19.53        19.23        14.70        11.97         7.99         4.37 
TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75I 
        1.02         4.01         0.49         9.57         5.10         8.71 
TCGA-NI-A4U2 
       58.88 

  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                          0.10                           0.03 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                        100.96                         113.00 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                         14.55                          13.91 
[1] "0.1 - 101.0 (14.6)" "0.0 - 113.0 (13.9)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 22(15Q26.3) MUTATED"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "AMP PEAK 22(15Q26.3) MUTATED"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-O8-A75V 
  "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 22(15Q26.3) MUTATED"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "AMP PEAK 22(15Q26.3) MUTATED"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-O8-A75V 
  "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 22(15Q26.3) MUTATED"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "AMP PEAK 22(15Q26.3) MUTATED"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "AMP PEAK 22(15Q26.3) MUTATED" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 22(15Q26.3) WILD-TYPE"   "AMP PEAK 22(15Q26.3) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK 22(15Q26.3) WILD-TYPE" "AMP PEAK 22(15Q26.3) WILD-TYPE" 
                    TCGA-O8-A75V 
  "AMP PEAK 22(15Q26.3) MUTATED" 
[1] "hr=" "1"  
D22V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 22(15Q26.3) MUTATED         7        8         0          7
  AMP PEAK 22(15Q26.3) WILD-TYPE      51       28         2         23
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 22(15Q26.3) MUTATED            1          1        0         0
  AMP PEAK 22(15Q26.3) WILD-TYPE          3          4        1         1
                                vv
clus                             STAGE IVB
  AMP PEAK 22(15Q26.3) MUTATED           0
  AMP PEAK 22(15Q26.3) WILD-TYPE         2
D22V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 22(15Q26.3) MUTATED    7  9  8  2
  AMP PEAK 22(15Q26.3) WILD-TYPE 54 31 32  6
D22V4, multiclass
    clus
vv   AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  T1                            7                             54
  T2                            9                             31
  T3                            8                             32
  T4                            2                              6
D22V5, binary
                                cls
clus                              0  1
  AMP PEAK 22(15Q26.3) MUTATED   15  0
  AMP PEAK 22(15Q26.3) WILD-TYPE 82  3
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(15Q26.3) MUTATED     15    0
  AMP PEAK 22(15Q26.3) WILD-TYPE   82    3
   clus
vv  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  0                           15                             82
  1                            0                              3
                                vv
clus                             M0 M1 MX
  AMP PEAK 22(15Q26.3) MUTATED   21  0  5
  AMP PEAK 22(15Q26.3) WILD-TYPE 94  3 26
D22V6, multiclass
    clus
vv   AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  M0                           21                             94
  M1                            0                              3
  MX                            5                             26
D22V7, binary
                                cls
clus                              0  1
  AMP PEAK 22(15Q26.3) MUTATED   11 15
  AMP PEAK 22(15Q26.3) WILD-TYPE 47 76
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(15Q26.3) MUTATED     11   15
  AMP PEAK 22(15Q26.3) WILD-TYPE   47   76
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  FEMALE                           11                             47
  MALE                             15                             76
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 22(15Q26.3) MUTATED    22   2   0   1
  AMP PEAK 22(15Q26.3) WILD-TYPE 100   9   1   9
D22V8, multiclass
    clus
vv   AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  R0                           22                            100
  R1                            2                              9
  R2                            0                              1
  RX                            1                              9

Clustering(23) Variable = AMP PEAK 23(16Q12.1) MUTATION ANALYSIS
D23V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 23(16Q12.1) MUTATED    7  5
  AMP PEAK 23(16Q12.1) WILD-TYPE 77 58
  AMP PEAK 23(16Q12.1) MUTATED AMP PEAK 23(16Q12.1) WILD-TYPE 
                            12                            135 
  AMP PEAK 23(16Q12.1) MUTATED AMP PEAK 23(16Q12.1) WILD-TYPE 
                             5                             58 
$`AMP PEAK 23(16Q12.1) MUTATED`
TCGA-BC-A10W TCGA-BC-A10Y TCGA-BC-A3KG TCGA-DD-A113 TCGA-DD-A1EJ TCGA-DD-A1EL 
        2.99        23.34        22.36        79.73        29.16        13.64 
TCGA-DD-A4NH TCGA-ED-A66Y TCGA-ED-A82E TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A5SM 
       14.24         0.23         0.20         1.22        51.06         4.37 

$`AMP PEAK 23(16Q12.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
       48.99        27.91        37.32        10.13        46.78        27.52 
TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
       27.52        25.32         1.12        69.57         5.03        44.42 
TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5258 
       13.84         0.26         9.50         3.95         0.53         0.07 
TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3M9 
        2.86         0.39         3.39         4.24         3.32         0.10 
TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 
        0.07         0.10         0.13        37.78        83.57        53.33 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D 
      113.00         7.33         2.60         0.46        21.76        51.29 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       90.71        79.40        66.31        19.79        75.65         6.71 
TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EK TCGA-DD-A39V 
       12.95        45.11        49.15         6.02        18.35        21.14 
TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 
       55.69         5.62        19.76        25.81         7.66        70.06 
TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 
       17.59        20.12       102.74       107.11        13.78         0.36 
TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NI 
       30.61        33.14        12.85        73.38        14.07        18.44 
TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP 
       15.06        39.78        56.25        29.56        61.45        93.67 
TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73B 
       12.26         0.30        80.75        66.35        10.98         9.30 
TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F TCGA-DD-A73G TCGA-ED-A459 
        7.56        10.98         1.45        27.72       100.96        13.41 
TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A7PX TCGA-ED-A7PY 
       12.69        15.85        13.91        13.35         0.20         0.20 
TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB 
        0.20         0.20        18.74        19.99        11.74        10.98 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B 
        0.62         9.96        11.93        22.85        14.40        32.45 
TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 
       19.10         0.20         8.12         6.38         0.13         0.03 
TCGA-FV-A496 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W 
        0.33        60.36         0.39        53.79        28.27        30.74 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
       58.49        14.86        21.53        22.13        25.64         5.92 
TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A6UC 
       19.53        19.23        14.70        11.97         7.99         7.76 
TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75G 
        1.02         4.01         0.49         9.57         5.10        14.24 
TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
        8.71        58.88         4.44 

  AMP PEAK 23(16Q12.1) MUTATED AMP PEAK 23(16Q12.1) WILD-TYPE 
                          0.20                           0.03 
  AMP PEAK 23(16Q12.1) MUTATED AMP PEAK 23(16Q12.1) WILD-TYPE 
                         79.73                         113.00 
  AMP PEAK 23(16Q12.1) MUTATED AMP PEAK 23(16Q12.1) WILD-TYPE 
                         13.94                          14.07 
[1] "0.2 - 79.7 (13.9)"  "0.0 - 113.0 (14.1)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 23(16Q12.1) WILD-TYPE"   "AMP PEAK 23(16Q12.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 23(16Q12.1) WILD-TYPE"   "AMP PEAK 23(16Q12.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "AMP PEAK 23(16Q12.1) MUTATED" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 23(16Q12.1) MUTATED" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "AMP PEAK 23(16Q12.1) MUTATED" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 23(16Q12.1) MUTATED" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 23(16Q12.1) WILD-TYPE"   "AMP PEAK 23(16Q12.1) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"AMP PEAK 23(16Q12.1) WILD-TYPE"   "AMP PEAK 23(16Q12.1) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "AMP PEAK 23(16Q12.1) MUTATED" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK 23(16Q12.1) MUTATED"   "AMP PEAK 23(16Q12.1) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "AMP PEAK 23(16Q12.1) MUTATED" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-O8-A75V 
"AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 23(16Q12.1) WILD-TYPE"   "AMP PEAK 23(16Q12.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 23(16Q12.1) WILD-TYPE"   "AMP PEAK 23(16Q12.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "AMP PEAK 23(16Q12.1) MUTATED" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 23(16Q12.1) MUTATED" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "AMP PEAK 23(16Q12.1) MUTATED" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 23(16Q12.1) MUTATED" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 23(16Q12.1) WILD-TYPE"   "AMP PEAK 23(16Q12.1) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"AMP PEAK 23(16Q12.1) WILD-TYPE"   "AMP PEAK 23(16Q12.1) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "AMP PEAK 23(16Q12.1) MUTATED" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK 23(16Q12.1) MUTATED"   "AMP PEAK 23(16Q12.1) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "AMP PEAK 23(16Q12.1) MUTATED" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-O8-A75V 
"AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 23(16Q12.1) WILD-TYPE"   "AMP PEAK 23(16Q12.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 23(16Q12.1) WILD-TYPE"   "AMP PEAK 23(16Q12.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "AMP PEAK 23(16Q12.1) MUTATED" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 23(16Q12.1) MUTATED" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "AMP PEAK 23(16Q12.1) MUTATED" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 23(16Q12.1) MUTATED" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 23(16Q12.1) WILD-TYPE"   "AMP PEAK 23(16Q12.1) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"AMP PEAK 23(16Q12.1) WILD-TYPE"   "AMP PEAK 23(16Q12.1) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "AMP PEAK 23(16Q12.1) MUTATED" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK 23(16Q12.1) MUTATED"   "AMP PEAK 23(16Q12.1) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "AMP PEAK 23(16Q12.1) MUTATED" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK 23(16Q12.1) WILD-TYPE" "AMP PEAK 23(16Q12.1) WILD-TYPE" 
                    TCGA-O8-A75V 
"AMP PEAK 23(16Q12.1) WILD-TYPE" 
[1] "hr=" "1.2"
D23V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 23(16Q12.1) MUTATED         1        4         0          4
  AMP PEAK 23(16Q12.1) WILD-TYPE      57       32         2         26
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 23(16Q12.1) MUTATED            1          1        0         0
  AMP PEAK 23(16Q12.1) WILD-TYPE          3          4        1         1
                                vv
clus                             STAGE IVB
  AMP PEAK 23(16Q12.1) MUTATED           0
  AMP PEAK 23(16Q12.1) WILD-TYPE         2
D23V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 23(16Q12.1) MUTATED    2  4  5  2
  AMP PEAK 23(16Q12.1) WILD-TYPE 59 36 35  6
D23V4, multiclass
    clus
vv   AMP PEAK 23(16Q12.1) MUTATED AMP PEAK 23(16Q12.1) WILD-TYPE
  T1                            2                             59
  T2                            4                             36
  T3                            5                             35
  T4                            2                              6
D23V5, binary
                                cls
clus                              0  1
  AMP PEAK 23(16Q12.1) MUTATED    9  1
  AMP PEAK 23(16Q12.1) WILD-TYPE 88  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(16Q12.1) MUTATED      9    1
  AMP PEAK 23(16Q12.1) WILD-TYPE   88    2
   clus
vv  AMP PEAK 23(16Q12.1) MUTATED AMP PEAK 23(16Q12.1) WILD-TYPE
  0                            9                             88
  1                            1                              2
                                vv
clus                              M0  M1  MX
  AMP PEAK 23(16Q12.1) MUTATED    11   0   2
  AMP PEAK 23(16Q12.1) WILD-TYPE 104   3  29
D23V6, multiclass
    clus
vv   AMP PEAK 23(16Q12.1) MUTATED AMP PEAK 23(16Q12.1) WILD-TYPE
  M0                           11                            104
  M1                            0                              3
  MX                            2                             29
D23V7, binary
                                cls
clus                              0  1
  AMP PEAK 23(16Q12.1) MUTATED    7  6
  AMP PEAK 23(16Q12.1) WILD-TYPE 51 85
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(16Q12.1) MUTATED      7    6
  AMP PEAK 23(16Q12.1) WILD-TYPE   51   85
        clus
vv       AMP PEAK 23(16Q12.1) MUTATED AMP PEAK 23(16Q12.1) WILD-TYPE
  FEMALE                            7                             51
  MALE                              6                             85
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 23(16Q12.1) MUTATED    10   2   0   1
  AMP PEAK 23(16Q12.1) WILD-TYPE 112   9   1   9
D23V8, multiclass
    clus
vv   AMP PEAK 23(16Q12.1) MUTATED AMP PEAK 23(16Q12.1) WILD-TYPE
  R0                           10                            112
  R1                            2                              9
  R2                            0                              1
  RX                            1                              9

Clustering(24) Variable = AMP PEAK 24(17P11.2) MUTATION ANALYSIS
D24V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 24(17P11.2) MUTATED   13 12
  AMP PEAK 24(17P11.2) WILD-TYPE 71 51
  AMP PEAK 24(17P11.2) MUTATED AMP PEAK 24(17P11.2) WILD-TYPE 
                            25                            122 
  AMP PEAK 24(17P11.2) MUTATED AMP PEAK 24(17P11.2) WILD-TYPE 
                            12                             51 
$`AMP PEAK 24(17P11.2) MUTATED`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A112 TCGA-BC-A217 TCGA-CC-5260 TCGA-CC-A3M9 
       27.91        37.32         5.03        13.84         2.86         0.10 
TCGA-DD-A115 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A3A3 TCGA-DD-A3A5 TCGA-DD-A3A7 
       83.57         7.33         2.60        17.59       102.74        13.78 
TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A73E TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PZ 
       61.45        93.67         1.45        13.35         0.23         0.20 
TCGA-EP-A2KA TCGA-EP-A2KB TCGA-ES-A2HS TCGA-FV-A4ZP TCGA-GJ-A6C0 TCGA-MI-A75G 
       11.74        10.98        22.85        60.36         1.02        14.24 
TCGA-O8-A75V 
        4.44 

$`AMP PEAK 24(17P11.2) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W 
       48.99        10.13        46.78        27.52        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A3KF 
       25.32        23.34         1.12        69.57        44.42         0.26 
TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5261 
       22.36         9.50         3.95         0.53         0.07         0.39 
TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC 
        3.39         4.24         3.32         0.07         0.10         0.13 
TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A11B TCGA-DD-A11C 
       79.73        37.78        53.33       113.00         0.46        21.76 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED 
       51.29        90.71        79.40        66.31        19.79        75.65 
TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ 
        6.71        12.95        45.11        49.15         6.02        29.16 
TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z 
       18.35        13.64        21.14        55.69         5.62        19.76 
TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A3A8 
       25.81         7.66        70.06        20.12       107.11         0.36 
TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH 
       30.61        33.14        12.85        73.38        14.07        14.24 
TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NQ 
       18.44        15.06        39.78        56.25        29.56        12.26 
TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C 
        0.30        80.75        66.35        10.98         9.30         7.56 
TCGA-DD-A73D TCGA-DD-A73F TCGA-DD-A73G TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A5KG 
       10.98        27.72       100.96        13.41        12.69        15.85 
TCGA-ED-A627 TCGA-ED-A7PX TCGA-ED-A7PY TCGA-ED-A7XP TCGA-ED-A82E TCGA-EP-A12J 
       13.91         0.20         0.20         0.20         0.20        18.74 
TCGA-EP-A26S TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B 
       19.99         0.62         9.96        11.93        14.40        32.45 
TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 
       19.10         0.20         8.12         6.38         0.13         0.03 
TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V 
        0.33         0.39         1.22        51.06        53.79        28.27 
TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH 
       30.74        58.49        14.86        21.53        22.13        25.64 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL 
        5.92        19.53        19.23        14.70        11.97         7.99 
TCGA-G3-A5SM TCGA-G3-A6UC TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E 
        4.37         7.76         4.01         0.49         9.57         5.10 
TCGA-MI-A75I TCGA-NI-A4U2 
        8.71        58.88 

  AMP PEAK 24(17P11.2) MUTATED AMP PEAK 24(17P11.2) WILD-TYPE 
                          0.10                           0.03 
  AMP PEAK 24(17P11.2) MUTATED AMP PEAK 24(17P11.2) WILD-TYPE 
                        102.74                         113.00 
  AMP PEAK 24(17P11.2) MUTATED AMP PEAK 24(17P11.2) WILD-TYPE 
                         13.35                          14.55 
[1] "0.1 - 102.7 (13.3)" "0.0 - 113.0 (14.6)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "AMP PEAK 24(17P11.2) MUTATED"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-O8-A75V 
  "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "AMP PEAK 24(17P11.2) MUTATED"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-O8-A75V 
  "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "AMP PEAK 24(17P11.2) MUTATED"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "AMP PEAK 24(17P11.2) MUTATED" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 24(17P11.2) WILD-TYPE"   "AMP PEAK 24(17P11.2) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"AMP PEAK 24(17P11.2) WILD-TYPE" "AMP PEAK 24(17P11.2) WILD-TYPE" 
                    TCGA-O8-A75V 
  "AMP PEAK 24(17P11.2) MUTATED" 
[1] "hr=" "1.1"
D24V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 24(17P11.2) MUTATED         8        4         1          8
  AMP PEAK 24(17P11.2) WILD-TYPE      50       32         1         22
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 24(17P11.2) MUTATED            1          1        1         0
  AMP PEAK 24(17P11.2) WILD-TYPE          3          4        0         1
                                vv
clus                             STAGE IVB
  AMP PEAK 24(17P11.2) MUTATED           0
  AMP PEAK 24(17P11.2) WILD-TYPE         2
D24V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 24(17P11.2) MUTATED    8  5 12  1
  AMP PEAK 24(17P11.2) WILD-TYPE 53 35 28  7
D24V4, multiclass
    clus
vv   AMP PEAK 24(17P11.2) MUTATED AMP PEAK 24(17P11.2) WILD-TYPE
  T1                            8                             53
  T2                            5                             35
  T3                           12                             28
  T4                            1                              7
D24V5, binary
                                cls
clus                              0  1
  AMP PEAK 24(17P11.2) MUTATED   16  0
  AMP PEAK 24(17P11.2) WILD-TYPE 81  3
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 24(17P11.2) MUTATED     16    0
  AMP PEAK 24(17P11.2) WILD-TYPE   81    3
   clus
vv  AMP PEAK 24(17P11.2) MUTATED AMP PEAK 24(17P11.2) WILD-TYPE
  0                           16                             81
  1                            0                              3
                                vv
clus                             M0 M1 MX
  AMP PEAK 24(17P11.2) MUTATED   17  1  8
  AMP PEAK 24(17P11.2) WILD-TYPE 98  2 23
D24V6, multiclass
    clus
vv   AMP PEAK 24(17P11.2) MUTATED AMP PEAK 24(17P11.2) WILD-TYPE
  M0                           17                             98
  M1                            1                              2
  MX                            8                             23
D24V7, binary
                                cls
clus                              0  1
  AMP PEAK 24(17P11.2) MUTATED    8 18
  AMP PEAK 24(17P11.2) WILD-TYPE 50 73
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 24(17P11.2) MUTATED      8   18
  AMP PEAK 24(17P11.2) WILD-TYPE   50   73
        clus
vv       AMP PEAK 24(17P11.2) MUTATED AMP PEAK 24(17P11.2) WILD-TYPE
  FEMALE                            8                             50
  MALE                             18                             73
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 24(17P11.2) MUTATED    18   4   1   3
  AMP PEAK 24(17P11.2) WILD-TYPE 104   7   0   7
D24V8, multiclass
    clus
vv   AMP PEAK 24(17P11.2) MUTATED AMP PEAK 24(17P11.2) WILD-TYPE
  R0                           18                            104
  R1                            4                              7
  R2                            1                              0
  RX                            3                              7

Clustering(25) Variable = AMP PEAK 25(17Q25.3) MUTATION ANALYSIS
D25V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 25(17Q25.3) MUTATED   39 30
  AMP PEAK 25(17Q25.3) WILD-TYPE 45 33
  AMP PEAK 25(17Q25.3) MUTATED AMP PEAK 25(17Q25.3) WILD-TYPE 
                            69                             78 
  AMP PEAK 25(17Q25.3) MUTATED AMP PEAK 25(17Q25.3) WILD-TYPE 
                            30                             33 
$`AMP PEAK 25(17Q25.3) MUTATED`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10Y 
       48.99        37.32        27.52        27.52         2.99        23.34 
TCGA-BC-A10Z TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A69H TCGA-CC-5260 
        1.12         5.03        44.42        13.84         3.95         2.86 
TCGA-CC-5261 TCGA-CC-5263 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 
        0.39         4.24         0.10         0.13        37.78        83.57 
TCGA-DD-A116 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EA TCGA-DD-A1EB 
       53.33         7.33         2.60        21.76        79.40        66.31 
TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A39Y TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A3 
        6.02        29.16         5.62        25.81         7.66        17.59 
TCGA-DD-A3A4 TCGA-DD-A3A7 TCGA-DD-A3A9 TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ 
       20.12        13.78        30.61        14.24        18.44        15.06 
TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A73A TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F 
       61.45        93.67        10.98        10.98         1.45        27.72 
TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-EP-A2KB TCGA-EP-A2KC 
       13.35         0.23         0.20         0.20        10.98         0.62 
TCGA-ES-A2HS TCGA-FV-A2QR TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25S 
       22.85        19.10         0.03         0.33        60.36         1.22 
TCGA-G3-A25U TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Z TCGA-G3-A3CJ TCGA-G3-A3CK 
       53.79        30.74        58.49        21.53        19.53        19.23 
TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-GJ-A6C0 TCGA-LG-A6GG TCGA-MI-A75G 
       14.70        11.97         7.99         1.02         0.49        14.24 
TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
        8.71        58.88         4.44 

$`AMP PEAK 25(17Q25.3) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10X TCGA-BC-A110 TCGA-BC-A3KF 
       27.91        10.13        46.78        25.32        69.57         0.26 
TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5262 TCGA-CC-A1HT 
       22.36         9.50         0.53         0.07         3.39         3.32 
TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A118 TCGA-DD-A11B TCGA-DD-A11D 
        0.10         0.07        79.73       113.00         0.46        51.29 
TCGA-DD-A1E9 TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EG 
       90.71        19.79        75.65         6.71        12.95        45.11 
TCGA-DD-A1EH TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Z 
       49.15        18.35        13.64        21.14        55.69        19.76 
TCGA-DD-A3A2 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4NB 
       70.06       102.74       107.11         0.36        33.14        12.85 
TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NQ 
       73.38        14.07        39.78        56.25        29.56        12.26 
TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73G 
        0.30        80.75        66.35         9.30         7.56       100.96 
TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A7PX TCGA-ED-A7PY 
       13.41        12.69        15.85        13.91         0.20         0.20 
TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A3JL TCGA-EP-A3RK 
        0.20        18.74        19.99        11.74         9.96        11.93 
TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 
       14.40        32.45         0.20         8.12         6.38         0.13 
TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25Y TCGA-G3-A3CG TCGA-G3-A3CH 
        0.39        51.06        28.27        14.86        22.13        25.64 
TCGA-G3-A3CI TCGA-G3-A5SM TCGA-G3-A6UC TCGA-K7-A6G5 TCGA-MI-A75C TCGA-MI-A75E 
        5.92         4.37         7.76         4.01         9.57         5.10 

  AMP PEAK 25(17Q25.3) MUTATED AMP PEAK 25(17Q25.3) WILD-TYPE 
                          0.03                           0.07 
  AMP PEAK 25(17Q25.3) MUTATED AMP PEAK 25(17Q25.3) WILD-TYPE 
                         93.67                         113.00 
  AMP PEAK 25(17Q25.3) MUTATED AMP PEAK 25(17Q25.3) WILD-TYPE 
                         14.24                          13.99 
[1] "0.0 - 93.7 (14.2)"  "0.1 - 113.0 (14.0)"
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-O8-A75V 
  "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-O8-A75V 
  "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"AMP PEAK 25(17Q25.3) WILD-TYPE" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
  "AMP PEAK 25(17Q25.3) MUTATED" "AMP PEAK 25(17Q25.3) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"AMP PEAK 25(17Q25.3) WILD-TYPE"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "AMP PEAK 25(17Q25.3) MUTATED"   "AMP PEAK 25(17Q25.3) MUTATED" 
                    TCGA-O8-A75V 
  "AMP PEAK 25(17Q25.3) MUTATED" 
[1] "hr=" "1.3"
D25V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 25(17Q25.3) MUTATED        24       17         0         15
  AMP PEAK 25(17Q25.3) WILD-TYPE      34       19         2         15
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 25(17Q25.3) MUTATED            3          2        1         0
  AMP PEAK 25(17Q25.3) WILD-TYPE          1          3        0         1
                                vv
clus                             STAGE IVB
  AMP PEAK 25(17Q25.3) MUTATED           1
  AMP PEAK 25(17Q25.3) WILD-TYPE         1
D25V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 25(17Q25.3) MUTATED   25 20 20  5
  AMP PEAK 25(17Q25.3) WILD-TYPE 36 20 20  3
D25V4, multiclass
    clus
vv   AMP PEAK 25(17Q25.3) MUTATED AMP PEAK 25(17Q25.3) WILD-TYPE
  T1                           25                             36
  T2                           20                             20
  T3                           20                             20
  T4                            5                              3
D25V5, binary
                                cls
clus                              0  1
  AMP PEAK 25(17Q25.3) MUTATED   41  1
  AMP PEAK 25(17Q25.3) WILD-TYPE 56  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(17Q25.3) MUTATED     41    1
  AMP PEAK 25(17Q25.3) WILD-TYPE   56    2
   clus
vv  AMP PEAK 25(17Q25.3) MUTATED AMP PEAK 25(17Q25.3) WILD-TYPE
  0                           41                             56
  1                            1                              2
                                vv
clus                             M0 M1 MX
  AMP PEAK 25(17Q25.3) MUTATED   53  2 15
  AMP PEAK 25(17Q25.3) WILD-TYPE 62  1 16
D25V6, multiclass
    clus
vv   AMP PEAK 25(17Q25.3) MUTATED AMP PEAK 25(17Q25.3) WILD-TYPE
  M0                           53                             62
  M1                            2                              1
  MX                           15                             16
D25V7, binary
                                cls
clus                              0  1
  AMP PEAK 25(17Q25.3) MUTATED   22 48
  AMP PEAK 25(17Q25.3) WILD-TYPE 36 43
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(17Q25.3) MUTATED     22   48
  AMP PEAK 25(17Q25.3) WILD-TYPE   36   43
        clus
vv       AMP PEAK 25(17Q25.3) MUTATED AMP PEAK 25(17Q25.3) WILD-TYPE
  FEMALE                           22                             36
  MALE                             48                             43
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 25(17Q25.3) MUTATED   54  8  1  7
  AMP PEAK 25(17Q25.3) WILD-TYPE 68  3  0  3
D25V8, multiclass
    clus
vv   AMP PEAK 25(17Q25.3) MUTATED AMP PEAK 25(17Q25.3) WILD-TYPE
  R0                           54                             68
  R1                            8                              3
  R2                            1                              0
  RX                            7                              3

Clustering(26) Variable = AMP PEAK 26(19Q13.11) MUTATION ANALYSIS
D26V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 26(19Q13.11) MUTATED   21 19
  AMP PEAK 26(19Q13.11) WILD-TYPE 63 44
  AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE 
                             40                             107 
  AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE 
                             19                              44 
$`AMP PEAK 26(19Q13.11) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A112 TCGA-BC-A3KG TCGA-CC-5261 TCGA-CC-A3M9 
       37.32        10.13         5.03        22.36         0.39         0.10 
TCGA-DD-A113 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EC 
       79.73       113.00         7.33        21.76        90.71        19.79 
TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EI TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A3A7 
       12.95        45.11         6.02        13.64        21.14        13.78 
TCGA-DD-A3A9 TCGA-DD-A4ND TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NQ TCGA-DD-A4NV 
       30.61        73.38        29.56        61.45        12.26        66.35 
TCGA-DD-A73G TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PZ TCGA-ED-A82E TCGA-EP-A2KA 
      100.96        13.35         0.23         0.20         0.20        11.74 
TCGA-EP-A2KB TCGA-EP-A2KC TCGA-ES-A2HS TCGA-FV-A3I0 TCGA-FV-A4ZQ TCGA-G3-A25T 
       10.98         0.62        22.85         0.20         0.39        51.06 
TCGA-G3-A25X TCGA-G3-A5SM TCGA-GJ-A6C0 TCGA-MI-A75G 
       58.49         4.37         1.02        14.24 

$`AMP PEAK 26(19Q13.11) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W 
       48.99        27.91        46.78        27.52        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A217 
       25.32        23.34         1.12        69.57        44.42        13.84 
TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5260 
        0.26         9.50         3.95         0.53         0.07         2.86 
TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC 
        3.39         4.24         3.32         0.07         0.10         0.13 
TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11D 
       37.78        83.57        53.33         2.60         0.46        51.29 
TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EJ 
       79.40        66.31        75.65         6.71        49.15        29.16 
TCGA-DD-A1EK TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 
       18.35        55.69         5.62        19.76        25.81         7.66 
TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A8 
       70.06        17.59        20.12       102.74       107.11         0.36 
TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ 
       33.14        12.85        14.07        14.24        18.44        15.06 
TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NP TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A73A 
       39.78        56.25        93.67         0.30        80.75        10.98 
TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F TCGA-ED-A459 
        9.30         7.56        10.98         1.45        27.72        13.41 
TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A7PX TCGA-ED-A7PY TCGA-ED-A7XP 
       12.69        15.85        13.91         0.20         0.20         0.20 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B 
       18.74        19.99         9.96        11.93        14.40        32.45 
TCGA-FV-A2QR TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 
       19.10         8.12         6.38         0.13         0.03         0.33 
TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y 
       60.36         1.22        53.79        28.27        30.74        14.86 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
       21.53        22.13        25.64         5.92        19.53        19.23 
TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A6UC TCGA-K7-A6G5 TCGA-LG-A6GG 
       14.70        11.97         7.99         7.76         4.01         0.49 
TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
        9.57         5.10         8.71        58.88         4.44 

  AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE 
                           0.10                            0.03 
  AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE 
                         113.00                          107.11 
  AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE 
                          13.71                           14.24 
[1] "0.1 - 113.0 (13.7)" "0.0 - 107.1 (14.2)"
                     TCGA-BC-4072                      TCGA-BC-4073 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-O8-A75V 
"AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-O8-A75V 
"AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "AMP PEAK 26(19Q13.11) MUTATED"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
  "AMP PEAK 26(19Q13.11) MUTATED" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"AMP PEAK 26(19Q13.11) WILD-TYPE"   "AMP PEAK 26(19Q13.11) MUTATED" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"AMP PEAK 26(19Q13.11) WILD-TYPE" "AMP PEAK 26(19Q13.11) WILD-TYPE" 
                     TCGA-O8-A75V 
"AMP PEAK 26(19Q13.11) WILD-TYPE" 
[1] "hr=" "1"  
D26V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 26(19Q13.11) MUTATED        14       13         0          7
  AMP PEAK 26(19Q13.11) WILD-TYPE      44       23         2         23
                                 vv
clus                              STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 26(19Q13.11) MUTATED            1          0        1         1
  AMP PEAK 26(19Q13.11) WILD-TYPE          3          5        0         0
                                 vv
clus                              STAGE IVB
  AMP PEAK 26(19Q13.11) MUTATED           1
  AMP PEAK 26(19Q13.11) WILD-TYPE         1
D26V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  AMP PEAK 26(19Q13.11) MUTATED   15 14 11  1
  AMP PEAK 26(19Q13.11) WILD-TYPE 46 26 29  7
D26V4, multiclass
    clus
vv   AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE
  T1                            15                              46
  T2                            14                              26
  T3                            11                              29
  T4                             1                               7
D26V5, binary
                                 cls
clus                               0  1
  AMP PEAK 26(19Q13.11) MUTATED   27  1
  AMP PEAK 26(19Q13.11) WILD-TYPE 70  2
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 26(19Q13.11) MUTATED     27    1
  AMP PEAK 26(19Q13.11) WILD-TYPE   70    2
   clus
vv  AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE
  0                            27                              70
  1                             1                               2
                                 vv
clus                              M0 M1 MX
  AMP PEAK 26(19Q13.11) MUTATED   30  2  9
  AMP PEAK 26(19Q13.11) WILD-TYPE 85  1 22
D26V6, multiclass
    clus
vv   AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE
  M0                            30                              85
  M1                             2                               1
  MX                             9                              22
D26V7, binary
                                 cls
clus                               0  1
  AMP PEAK 26(19Q13.11) MUTATED   18 23
  AMP PEAK 26(19Q13.11) WILD-TYPE 40 68
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 26(19Q13.11) MUTATED     18   23
  AMP PEAK 26(19Q13.11) WILD-TYPE   40   68
        clus
vv       AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE
  FEMALE                            18                              40
  MALE                              23                              68
                                 vv
clus                              R0 R1 R2 RX
  AMP PEAK 26(19Q13.11) MUTATED   36  1  1  3
  AMP PEAK 26(19Q13.11) WILD-TYPE 86 10  0  7
D26V8, multiclass
    clus
vv   AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE
  R0                            36                              86
  R1                             1                              10
  R2                             1                               0
  RX                             3                               7

Clustering(27) Variable = AMP PEAK 27(20Q13.33) MUTATION ANALYSIS
D27V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 27(20Q13.33) MUTATED   26 22
  AMP PEAK 27(20Q13.33) WILD-TYPE 58 41
  AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE 
                             48                              99 
  AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE 
                             22                              41 
$`AMP PEAK 27(20Q13.33) MUTATED`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10Y TCGA-BC-A217 TCGA-BC-A3KF 
       48.99        37.32        10.13        23.34        13.84         0.26 
TCGA-BC-A69H TCGA-CC-5261 TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 
        3.95         0.39         0.10         0.10         0.13        79.73 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A1EF 
      113.00         7.33         2.60         0.46        21.76        12.95 
TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A39V TCGA-DD-A3A5 TCGA-DD-A3A7 
       45.11        49.15        29.16        21.14       102.74        13.78 
TCGA-DD-A3A9 TCGA-DD-A4ND TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NR TCGA-DD-A4NV 
       30.61        73.38        29.56        61.45         0.30        66.35 
TCGA-DD-A73F TCGA-DD-A73G TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A82E TCGA-EP-A2KA 
       27.72       100.96        13.35         0.23         0.20        11.74 
TCGA-EP-A2KB TCGA-EP-A3JL TCGA-ES-A2HS TCGA-FV-A23B TCGA-FV-A3R2 TCGA-FV-A4ZQ 
       10.98         9.96        22.85        32.45         6.38         0.39 
TCGA-G3-A25S TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A5SM TCGA-LG-A6GG TCGA-MI-A75G 
        1.22        30.74        58.49         4.37         0.49        14.24 

$`AMP PEAK 27(20Q13.33) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X 
       27.91        46.78        27.52        27.52         2.99        25.32 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A3KG TCGA-BC-A5W4 
        1.12        69.57         5.03        44.42        22.36         9.50 
TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT 
        0.53         0.07         2.86         3.39         4.24         3.32 
TCGA-CC-A3MA TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A11D TCGA-DD-A1E9 
        0.07        37.78        83.57        53.33        51.29        90.71 
TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EI 
       79.40        66.31        19.79        75.65         6.71         6.02 
TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 
       18.35        13.64        55.69         5.62        19.76        25.81 
TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A3A8 
        7.66        70.06        17.59        20.12       107.11         0.36 
TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ 
       33.14        12.85        14.07        14.24        18.44        15.06 
TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NS TCGA-DD-A73A 
       39.78        56.25        93.67        12.26        80.75        10.98 
TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E TCGA-ED-A459 TCGA-ED-A4XI 
        9.30         7.56        10.98         1.45        13.41        12.69 
TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A7PX TCGA-ED-A7PY TCGA-ED-A7PZ TCGA-ED-A7XP 
       15.85        13.91         0.20         0.20         0.20         0.20 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KC TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A2QR 
       18.74        19.99         0.62        11.93        14.40        19.10 
TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP 
        0.20         8.12         0.13         0.03         0.33        60.36 
TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG 
       51.06        53.79        28.27        14.86        21.53        22.13 
TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ 
       25.64         5.92        19.53        19.23        14.70        11.97 
TCGA-G3-A5SL TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-MI-A75C TCGA-MI-A75E 
        7.99         7.76         1.02         4.01         9.57         5.10 
TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
        8.71        58.88         4.44 

  AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE 
                           0.10                            0.03 
  AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE 
                         113.00                          107.11 
  AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE 
                          13.81                           14.24 
[1] "0.1 - 113.0 (13.8)" "0.0 - 107.1 (14.2)"
                     TCGA-BC-4072                      TCGA-BC-4073 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 27(20Q13.33) WILD-TYPE"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
"AMP PEAK 27(20Q13.33) WILD-TYPE"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
"AMP PEAK 27(20Q13.33) WILD-TYPE"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"AMP PEAK 27(20Q13.33) WILD-TYPE"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
"AMP PEAK 27(20Q13.33) WILD-TYPE"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"AMP PEAK 27(20Q13.33) WILD-TYPE"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-O8-A75V 
"AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 27(20Q13.33) WILD-TYPE"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
"AMP PEAK 27(20Q13.33) WILD-TYPE"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
"AMP PEAK 27(20Q13.33) WILD-TYPE"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"AMP PEAK 27(20Q13.33) WILD-TYPE"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
"AMP PEAK 27(20Q13.33) WILD-TYPE"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"AMP PEAK 27(20Q13.33) WILD-TYPE"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-O8-A75V 
"AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 27(20Q13.33) WILD-TYPE"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
"AMP PEAK 27(20Q13.33) WILD-TYPE"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
"AMP PEAK 27(20Q13.33) WILD-TYPE"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"AMP PEAK 27(20Q13.33) WILD-TYPE"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
"AMP PEAK 27(20Q13.33) WILD-TYPE"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
  "AMP PEAK 27(20Q13.33) MUTATED"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
  "AMP PEAK 27(20Q13.33) MUTATED" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"AMP PEAK 27(20Q13.33) WILD-TYPE"   "AMP PEAK 27(20Q13.33) MUTATED" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"AMP PEAK 27(20Q13.33) WILD-TYPE" "AMP PEAK 27(20Q13.33) WILD-TYPE" 
                     TCGA-O8-A75V 
"AMP PEAK 27(20Q13.33) WILD-TYPE" 
[1] "hr=" "1"  
D27V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 27(20Q13.33) MUTATED        18       11         2         10
  AMP PEAK 27(20Q13.33) WILD-TYPE      40       25         0         20
                                 vv
clus                              STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 27(20Q13.33) MUTATED            2          1        1         1
  AMP PEAK 27(20Q13.33) WILD-TYPE          2          4        0         0
                                 vv
clus                              STAGE IVB
  AMP PEAK 27(20Q13.33) MUTATED           1
  AMP PEAK 27(20Q13.33) WILD-TYPE         1
D27V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  AMP PEAK 27(20Q13.33) MUTATED   20 12 16  2
  AMP PEAK 27(20Q13.33) WILD-TYPE 41 28 24  6
D27V4, multiclass
    clus
vv   AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  T1                            20                              41
  T2                            12                              28
  T3                            16                              24
  T4                             2                               6
D27V5, binary
                                 cls
clus                               0  1
  AMP PEAK 27(20Q13.33) MUTATED   33  2
  AMP PEAK 27(20Q13.33) WILD-TYPE 64  1
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 27(20Q13.33) MUTATED     33    2
  AMP PEAK 27(20Q13.33) WILD-TYPE   64    1
   clus
vv  AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  0                            33                              64
  1                             2                               1
                                 vv
clus                              M0 M1 MX
  AMP PEAK 27(20Q13.33) MUTATED   39  2  9
  AMP PEAK 27(20Q13.33) WILD-TYPE 76  1 22
D27V6, multiclass
    clus
vv   AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  M0                            39                              76
  M1                             2                               1
  MX                             9                              22
D27V7, binary
                                 cls
clus                               0  1
  AMP PEAK 27(20Q13.33) MUTATED   23 27
  AMP PEAK 27(20Q13.33) WILD-TYPE 35 64
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 27(20Q13.33) MUTATED     23   27
  AMP PEAK 27(20Q13.33) WILD-TYPE   35   64
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  FEMALE                            23                              35
  MALE                              27                              64
                                 vv
clus                              R0 R1 R2 RX
  AMP PEAK 27(20Q13.33) MUTATED   41  3  1  4
  AMP PEAK 27(20Q13.33) WILD-TYPE 81  8  0  6
D27V8, multiclass
    clus
vv   AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  R0                            41                              81
  R1                             3                               8
  R2                             1                               0
  RX                             4                               6

Clustering(28) Variable = AMP PEAK 28(XQ28) MUTATION ANALYSIS
D28V1, survival
                             sevent
clus2                          0  1
  AMP PEAK 28(XQ28) MUTATED   25 12
  AMP PEAK 28(XQ28) WILD-TYPE 59 51
  AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE 
                         37                         110 
  AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE 
                         12                          51 
$`AMP PEAK 28(XQ28) MUTATED`
TCGA-BC-A10U TCGA-BC-A69I TCGA-CC-A3MA TCGA-DD-A114 TCGA-DD-A11A TCGA-DD-A1E9 
       27.52         0.53         0.07        37.78         2.60        90.71 
TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A3A3 TCGA-DD-A3A7 TCGA-DD-A4NF TCGA-DD-A4NK 
       21.14         5.62        17.59        13.78        14.07        39.78 
TCGA-DD-A4NV TCGA-DD-A73D TCGA-DD-A73G TCGA-ED-A66Y TCGA-ED-A7PZ TCGA-EP-A12J 
       66.35        10.98       100.96         0.23         0.20        18.74 
TCGA-EP-A2KA TCGA-EP-A3JL TCGA-ES-A2HS TCGA-FV-A2QR TCGA-FV-A496 TCGA-FV-A4ZQ 
       11.74         9.96        22.85        19.10         0.33         0.39 
TCGA-G3-A25U TCGA-G3-A3CG TCGA-G3-A3CJ TCGA-G3-A5SI TCGA-G3-A5SL TCGA-G3-A6UC 
       53.79        22.13        19.53        14.70         7.99         7.76 
TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75G TCGA-NI-A4U2 
        4.01         0.49         9.57         5.10        14.24        58.88 
TCGA-O8-A75V 
        4.44 

$`AMP PEAK 28(XQ28) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
       48.99        27.91        37.32        10.13        46.78        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 
        2.99        25.32        23.34         1.12        69.57         5.03 
TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-BC-A69H 
       44.42        13.84         0.26        22.36         9.50         3.95 
TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT 
        0.07         2.86         0.39         3.39         4.24         3.32 
TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A116 
        0.10         0.10         0.13        79.73        83.57        53.33 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1EA 
      113.00         7.33         0.46        21.76        51.29        79.40 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EG 
       66.31        19.79        75.65         6.71        12.95        45.11 
TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A39X 
       49.15         6.02        29.16        18.35        13.64        55.69 
TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A4 TCGA-DD-A3A5 
       19.76        25.81         7.66        70.06        20.12       102.74 
TCGA-DD-A3A6 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4ND 
      107.11         0.36        30.61        33.14        12.85        73.38 
TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO 
       14.24        18.44        15.06        56.25        29.56        61.45 
TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A73A TCGA-DD-A73B 
       93.67        12.26         0.30        80.75        10.98         9.30 
TCGA-DD-A73C TCGA-DD-A73E TCGA-DD-A73F TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A5KG 
        7.56         1.45        27.72        13.41        12.69        15.85 
TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A7PX TCGA-ED-A7PY TCGA-ED-A7XP TCGA-ED-A82E 
       13.91        13.35         0.20         0.20         0.20         0.20 
TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B 
       19.99        10.98         0.62        11.93        14.40        32.45 
TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A4ZP 
        0.20         8.12         6.38         0.13         0.03        60.36 
TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y 
        1.22        51.06        28.27        30.74        58.49        14.86 
TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SM 
       21.53        25.64         5.92        19.23        11.97         4.37 
TCGA-GJ-A6C0 TCGA-MI-A75I 
        1.02         8.71 

  AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE 
                       0.07                        0.03 
  AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE 
                     100.96                      113.00 
  AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE 
                      13.78                       14.32 
[1] "0.1 - 101.0 (13.8)" "0.0 - 113.0 (14.3)"
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A113                  TCGA-DD-A114 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-FV-A495                  TCGA-FV-A496 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
  "AMP PEAK 28(XQ28) MUTATED"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
  "AMP PEAK 28(XQ28) MUTATED"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-O8-A75V 
  "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A113                  TCGA-DD-A114 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-FV-A495                  TCGA-FV-A496 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
  "AMP PEAK 28(XQ28) MUTATED"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
  "AMP PEAK 28(XQ28) MUTATED"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-O8-A75V 
  "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A113                  TCGA-DD-A114 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-FV-A495                  TCGA-FV-A496 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
"AMP PEAK 28(XQ28) WILD-TYPE" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
  "AMP PEAK 28(XQ28) MUTATED" "AMP PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
  "AMP PEAK 28(XQ28) MUTATED"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
  "AMP PEAK 28(XQ28) MUTATED"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
"AMP PEAK 28(XQ28) WILD-TYPE"   "AMP PEAK 28(XQ28) MUTATED" 
                 TCGA-O8-A75V 
  "AMP PEAK 28(XQ28) MUTATED" 
[1] "hr=" "1.1"
D28V2, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 28(XQ28) MUTATED        18        8         0          8          2
  AMP PEAK 28(XQ28) WILD-TYPE      40       28         2         22          2
                             vv
clus                          STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  AMP PEAK 28(XQ28) MUTATED            1        0         0         0
  AMP PEAK 28(XQ28) WILD-TYPE          4        1         1         2
D28V3, multiclass
                             vv
clus                          T1 T2 T3 T4
  AMP PEAK 28(XQ28) MUTATED   18  9 10  1
  AMP PEAK 28(XQ28) WILD-TYPE 43 31 30  7
D28V4, multiclass
    clus
vv   AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  T1                        18                          43
  T2                         9                          31
  T3                        10                          30
  T4                         1                           7
D28V5, binary
                             cls
clus                           0  1
  AMP PEAK 28(XQ28) MUTATED   22  0
  AMP PEAK 28(XQ28) WILD-TYPE 75  3
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 28(XQ28) MUTATED     22    0
  AMP PEAK 28(XQ28) WILD-TYPE   75    3
   clus
vv  AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  0                        22                          75
  1                         0                           3
                             vv
clus                          M0 M1 MX
  AMP PEAK 28(XQ28) MUTATED   29  0  9
  AMP PEAK 28(XQ28) WILD-TYPE 86  3 22
D28V6, multiclass
    clus
vv   AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  M0                        29                          86
  M1                         0                           3
  MX                         9                          22
D28V7, binary
                             cls
clus                           0  1
  AMP PEAK 28(XQ28) MUTATED    8 30
  AMP PEAK 28(XQ28) WILD-TYPE 50 61
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 28(XQ28) MUTATED      8   30
  AMP PEAK 28(XQ28) WILD-TYPE   50   61
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  FEMALE                         8                          50
  MALE                          30                          61
                             vv
clus                          R0 R1 R2 RX
  AMP PEAK 28(XQ28) MUTATED   31  3  0  3
  AMP PEAK 28(XQ28) WILD-TYPE 91  8  1  7
D28V8, multiclass
    clus
vv   AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  R0                        31                          91
  R1                         3                           8
  R2                         0                           1
  RX                         3                           7

Clustering(29) Variable = DEL PEAK  1(1P36.23) MUTATION ANALYSIS
D29V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.23) MUTATED   37 33
  DEL PEAK  1(1P36.23) WILD-TYPE 47 30
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            70                             77 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            33                             30 
$`DEL PEAK  1(1P36.23) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10Y TCGA-BC-A112 
       37.32        46.78        27.52         2.99        23.34         5.03 
TCGA-BC-A217 TCGA-BC-A69H TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 
       13.84         3.95         2.86         0.39         3.39         4.24 
TCGA-CC-A3MA TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 
        0.07         0.10        79.73        53.33       113.00         7.33 
TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EB 
        2.60         0.46        21.76        51.29        90.71        66.31 
TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A39X TCGA-DD-A39Z 
       12.95        45.11        49.15        29.16        55.69        19.76 
TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A9 TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ 
       25.81         7.66        30.61        14.24        18.44        15.06 
TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NR TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73F 
       29.56        61.45         0.30        10.98         9.30        27.72 
TCGA-DD-A73G TCGA-ED-A4XI TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7PY 
      100.96        12.69        13.35         0.23         0.20         0.20 
TCGA-ED-A82E TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3RK TCGA-ES-A2HS TCGA-FV-A23B 
        0.20        10.98         0.62        11.93        22.85        32.45 
TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A4ZP TCGA-G3-A25S 
       19.10         0.20         0.13         0.03        60.36         1.22 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A5SI TCGA-G3-A5SJ 
       28.27        30.74        58.49        14.86        14.70        11.97 
TCGA-G3-A5SL TCGA-G3-A5SM TCGA-MI-A75G TCGA-O8-A75V 
        7.99         4.37        14.24         4.44 

$`DEL PEAK  1(1P36.23) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A10Z 
       48.99        27.91        10.13        27.52        25.32         1.12 
TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-BC-A69I 
       69.57        44.42         0.26        22.36         9.50         0.53 
TCGA-CC-5258 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 
        0.07         3.32         0.10         0.13        37.78        83.57 
TCGA-DD-A1EA TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EI TCGA-DD-A1EK 
       79.40        19.79        75.65         6.71         6.02        18.35 
TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 
       13.64        21.14         5.62        70.06        17.59        20.12 
TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4NB 
      102.74       107.11        13.78         0.36        33.14        12.85 
TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NP TCGA-DD-A4NQ 
       73.38        14.07        39.78        56.25        93.67        12.26 
TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E TCGA-ED-A459 
       80.75        66.35         7.56        10.98         1.45        13.41 
TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-EP-A12J TCGA-EP-A26S 
       15.85        13.91         0.20         0.20        18.74        19.99 
TCGA-EP-A2KA TCGA-EP-A3JL TCGA-ES-A2HT TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A496 
       11.74         9.96        14.40         8.12         6.38         0.33 
TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH 
        0.39        51.06        53.79        21.53        22.13        25.64 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-K7-A6G5 
        5.92        19.53        19.23         7.76         1.02         4.01 
TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75I TCGA-NI-A4U2 
        0.49         9.57         5.10         8.71        58.88 

  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                          0.03                           0.07 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                        113.00                         107.11 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                         14.04                          14.07 
[1] "0.0 - 113.0 (14.0)" "0.1 - 107.1 (14.1)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-FV-A495                     TCGA-FV-A496 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-O8-A75V 
  "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-FV-A495                     TCGA-FV-A496 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-O8-A75V 
  "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-FV-A495                     TCGA-FV-A496 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "DEL PEAK  1(1P36.23) MUTATED"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-O8-A75V 
  "DEL PEAK  1(1P36.23) MUTATED" 
[1] "hr=" "1.3"
D29V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK  1(1P36.23) MUTATED        27       18         1         11
  DEL PEAK  1(1P36.23) WILD-TYPE      31       18         1         19
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK  1(1P36.23) MUTATED            2          3        1         1
  DEL PEAK  1(1P36.23) WILD-TYPE          2          2        0         0
                                vv
clus                             STAGE IVB
  DEL PEAK  1(1P36.23) MUTATED           1
  DEL PEAK  1(1P36.23) WILD-TYPE         1
D29V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK  1(1P36.23) MUTATED   29 19 17  6
  DEL PEAK  1(1P36.23) WILD-TYPE 32 21 23  2
D29V4, multiclass
    clus
vv   DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  T1                           29                             32
  T2                           19                             21
  T3                           17                             23
  T4                            6                              2
D29V5, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.23) MUTATED   43  2
  DEL PEAK  1(1P36.23) WILD-TYPE 54  1
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) MUTATED     43    2
  DEL PEAK  1(1P36.23) WILD-TYPE   54    1
   clus
vv  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  0                           43                             54
  1                            2                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK  1(1P36.23) MUTATED   56  2 13
  DEL PEAK  1(1P36.23) WILD-TYPE 59  1 18
D29V6, multiclass
    clus
vv   DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  M0                           56                             59
  M1                            2                              1
  MX                           13                             18
D29V7, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.23) MUTATED   30 41
  DEL PEAK  1(1P36.23) WILD-TYPE 28 50
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) MUTATED     30   41
  DEL PEAK  1(1P36.23) WILD-TYPE   28   50
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  FEMALE                           30                             28
  MALE                             41                             50
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK  1(1P36.23) MUTATED   56  6  1  6
  DEL PEAK  1(1P36.23) WILD-TYPE 66  5  0  4
D29V8, multiclass
    clus
vv   DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  R0                           56                             66
  R1                            6                              5
  R2                            1                              0
  RX                            6                              4

Clustering(30) Variable = DEL PEAK  2(2Q22.1) MUTATION ANALYSIS
D30V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  2(2Q22.1) MUTATED    5  9
  DEL PEAK  2(2Q22.1) WILD-TYPE 79 54
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                           14                           133 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                            9                            54 
$`DEL PEAK  2(2Q22.1) MUTATED`
TCGA-BC-A10R TCGA-BC-A10Y TCGA-BC-A3KF TCGA-DD-A115 TCGA-DD-A1EL TCGA-DD-A39V 
       10.13        23.34         0.26        83.57        13.64        21.14 
TCGA-DD-A39Y TCGA-DD-A3A1 TCGA-DD-A4NJ TCGA-DD-A73B TCGA-ED-A459 TCGA-ED-A66Y 
        5.62         7.66        15.06         9.30        13.41         0.23 
TCGA-ED-A7PZ TCGA-FV-A3I1 
        0.20         8.12 

$`DEL PEAK  2(2Q22.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U 
       48.99        27.91        37.32        46.78        27.52        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
        2.99        25.32         1.12        69.57         5.03        44.42 
TCGA-BC-A217 TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5258 
       13.84        22.36         9.50         3.95         0.53         0.07 
TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3M9 
        2.86         0.39         3.39         4.24         3.32         0.10 
TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A116 
        0.07         0.10         0.13        79.73        37.78        53.33 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D 
      113.00         7.33         2.60         0.46        21.76        51.29 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       90.71        79.40        66.31        19.79        75.65         6.71 
TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EK 
       12.95        45.11        49.15         6.02        29.16        18.35 
TCGA-DD-A39X TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 
       55.69        19.76        25.81        70.06        17.59        20.12 
TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA 
      102.74       107.11        13.78         0.36        30.61        33.14 
TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NK 
       12.85        73.38        14.07        14.24        18.44        39.78 
TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NR 
       56.25        29.56        61.45        93.67        12.26         0.30 
TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E 
       80.75        66.35        10.98         7.56        10.98         1.45 
TCGA-DD-A73F TCGA-DD-A73G TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X 
       27.72       100.96        12.69        15.85        13.91        13.35 
TCGA-ED-A7PX TCGA-ED-A7PY TCGA-ED-A7XP TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A26S 
        0.20         0.20         0.20         0.20        18.74        19.99 
TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS 
       11.74        10.98         0.62         9.96        11.93        22.85 
TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A3R3 
       14.40        32.45        19.10         0.20         6.38         0.13 
TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T 
        0.03         0.33        60.36         0.39         1.22        51.06 
TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z 
       53.79        28.27        30.74        58.49        14.86        21.53 
TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI 
       22.13        25.64         5.92        19.53        19.23        14.70 
TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-K7-A6G5 
       11.97         7.99         4.37         7.76         1.02         4.01 
TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75G TCGA-MI-A75I TCGA-NI-A4U2 
        0.49         9.57         5.10        14.24         8.71        58.88 
TCGA-O8-A75V 
        4.44 

  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                         0.20                          0.03 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                        83.57                        113.00 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                        9.715                        14.400 
[1] "0.2 - 83.6 (9.7)"   "0.0 - 113.0 (14.4)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK  2(2Q22.1) MUTATED"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-O8-A75V 
"DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK  2(2Q22.1) MUTATED"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-O8-A75V 
"DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK  2(2Q22.1) MUTATED"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-O8-A75V 
"DEL PEAK  2(2Q22.1) WILD-TYPE" 
[1] "hr=" "2.6"
D30V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK  2(2Q22.1) MUTATED         3        6         0          4
  DEL PEAK  2(2Q22.1) WILD-TYPE      55       30         2         26
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK  2(2Q22.1) MUTATED            0          0        0         0
  DEL PEAK  2(2Q22.1) WILD-TYPE          4          5        1         1
                               vv
clus                            STAGE IVB
  DEL PEAK  2(2Q22.1) MUTATED           0
  DEL PEAK  2(2Q22.1) WILD-TYPE         2
D30V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  2(2Q22.1) MUTATED    3  6  5  1
  DEL PEAK  2(2Q22.1) WILD-TYPE 58 34 35  7
D30V4, multiclass
    clus
vv   DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  T1                           3                            58
  T2                           6                            34
  T3                           5                            35
  T4                           1                             7
D30V5, binary
                               cls
clus                             0  1
  DEL PEAK  2(2Q22.1) MUTATED    9  0
  DEL PEAK  2(2Q22.1) WILD-TYPE 88  3
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2Q22.1) MUTATED      9    0
  DEL PEAK  2(2Q22.1) WILD-TYPE   88    3
   clus
vv  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  0                           9                            88
  1                           0                             3
                               vv
clus                             M0  M1  MX
  DEL PEAK  2(2Q22.1) MUTATED    12   0   3
  DEL PEAK  2(2Q22.1) WILD-TYPE 103   3  28
D30V6, multiclass
    clus
vv   DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  M0                          12                           103
  M1                           0                             3
  MX                           3                            28
D30V7, binary
                               cls
clus                             0  1
  DEL PEAK  2(2Q22.1) MUTATED    6  9
  DEL PEAK  2(2Q22.1) WILD-TYPE 52 82
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2Q22.1) MUTATED      6    9
  DEL PEAK  2(2Q22.1) WILD-TYPE   52   82
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  FEMALE                           6                            52
  MALE                             9                            82
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK  2(2Q22.1) MUTATED    14   0   0   1
  DEL PEAK  2(2Q22.1) WILD-TYPE 108  11   1   9
D30V8, multiclass
    clus
vv   DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  R0                          14                           108
  R1                           0                            11
  R2                           0                             1
  RX                           1                             9

Clustering(31) Variable = DEL PEAK  3(2Q37.3) MUTATION ANALYSIS
D31V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  3(2Q37.3) MUTATED   19  8
  DEL PEAK  3(2Q37.3) WILD-TYPE 65 55
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           27                           120 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                            8                            55 
$`DEL PEAK  3(2Q37.3) MUTATED`
TCGA-BC-A10Y TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-BC-A69H TCGA-CC-A3M9 
       23.34        44.42         0.26         9.50         3.95         0.10 
TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EB TCGA-DD-A1EL 
       79.73        83.57         2.60        21.76        66.31        13.64 
TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A4NA TCGA-DD-A4NJ TCGA-DD-A4NQ TCGA-DD-A73B 
        5.62        19.76        33.14        15.06        12.26         9.30 
TCGA-ED-A459 TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7PZ TCGA-FV-A3I0 TCGA-FV-A3I1 
       13.41         0.23         0.20         0.20         0.20         8.12 
TCGA-FV-A496 TCGA-G3-A5SI TCGA-MI-A75I 
        0.33        14.70         8.71 

$`DEL PEAK  3(2Q37.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
       48.99        27.91        37.32        10.13        46.78        27.52 
TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 
       27.52         2.99        25.32         1.12        69.57         5.03 
TCGA-BC-A217 TCGA-BC-A3KG TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 
       13.84        22.36         0.53         0.07         2.86         0.39 
TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC 
        3.39         4.24         3.32         0.07         0.10         0.13 
TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11D 
       37.78        53.33       113.00         7.33         0.46        51.29 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF 
       90.71        79.40        19.79        75.65         6.71        12.95 
TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EK TCGA-DD-A39V 
       45.11        49.15         6.02        29.16        18.35        21.14 
TCGA-DD-A39X TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 
       55.69        25.81         7.66        70.06        17.59        20.12 
TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NB 
      102.74       107.11        13.78         0.36        30.61        12.85 
TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NL 
       73.38        14.07        14.24        18.44        39.78        56.25 
TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV 
       29.56        61.45        93.67         0.30        80.75        66.35 
TCGA-DD-A73A TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F TCGA-DD-A73G 
       10.98         7.56        10.98         1.45        27.72       100.96 
TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A7PY TCGA-ED-A7XP 
       12.69        15.85        13.91        13.35         0.20         0.20 
TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC 
        0.20        18.74        19.99        11.74        10.98         0.62 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR 
        9.96        11.93        22.85        14.40        32.45        19.10 
TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25S 
        6.38         0.13         0.03        60.36         0.39         1.22 
TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y 
       51.06        53.79        28.27        30.74        58.49        14.86 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
       21.53        22.13        25.64         5.92        19.53        19.23 
TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-K7-A6G5 
       11.97         7.99         4.37         7.76         1.02         4.01 
TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75G TCGA-NI-A4U2 TCGA-O8-A75V 
        0.49         9.57         5.10        14.24        58.88         4.44 

  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                         0.10                          0.03 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                        83.57                        113.00 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                         9.50                         14.63 
[1] "0.1 - 83.6 (9.5)"   "0.0 - 113.0 (14.6)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-O8-A75V 
"DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-O8-A75V 
"DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-O8-A75V 
"DEL PEAK  3(2Q37.3) WILD-TYPE" 
[1] "hr=" "1.1"
D31V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK  3(2Q37.3) MUTATED         7       12         0          6
  DEL PEAK  3(2Q37.3) WILD-TYPE      51       24         2         24
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK  3(2Q37.3) MUTATED            0          1        0         0
  DEL PEAK  3(2Q37.3) WILD-TYPE          4          4        1         1
                               vv
clus                            STAGE IVB
  DEL PEAK  3(2Q37.3) MUTATED           0
  DEL PEAK  3(2Q37.3) WILD-TYPE         2
D31V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  3(2Q37.3) MUTATED    7 14  6  1
  DEL PEAK  3(2Q37.3) WILD-TYPE 54 26 34  7
D31V4, multiclass
    clus
vv   DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  T1                           7                            54
  T2                          14                            26
  T3                           6                            34
  T4                           1                             7
D31V5, binary
                               cls
clus                             0  1
  DEL PEAK  3(2Q37.3) MUTATED   15  1
  DEL PEAK  3(2Q37.3) WILD-TYPE 82  2
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) MUTATED     15    1
  DEL PEAK  3(2Q37.3) WILD-TYPE   82    2
   clus
vv  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  0                          15                            82
  1                           1                             2
                               vv
clus                            M0 M1 MX
  DEL PEAK  3(2Q37.3) MUTATED   25  0  3
  DEL PEAK  3(2Q37.3) WILD-TYPE 90  3 28
D31V6, multiclass
    clus
vv   DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  M0                          25                            90
  M1                           0                             3
  MX                           3                            28
D31V7, binary
                               cls
clus                             0  1
  DEL PEAK  3(2Q37.3) MUTATED   13 15
  DEL PEAK  3(2Q37.3) WILD-TYPE 45 76
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) MUTATED     13   15
  DEL PEAK  3(2Q37.3) WILD-TYPE   45   76
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  FEMALE                          13                            45
  MALE                            15                            76
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  3(2Q37.3) MUTATED   25  1  0  2
  DEL PEAK  3(2Q37.3) WILD-TYPE 97 10  1  8
D31V8, multiclass
    clus
vv   DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  R0                          25                            97
  R1                           1                            10
  R2                           0                             1
  RX                           2                             8

Clustering(32) Variable = DEL PEAK  4(3P13) MUTATION ANALYSIS
D32V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  4(3P13) MUTATED   19  7
  DEL PEAK  4(3P13) WILD-TYPE 65 56
  DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE 
                         26                         121 
  DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE 
                          7                          56 
$`DEL PEAK  4(3P13) MUTATED`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A112 TCGA-BC-A217 TCGA-CC-5260 
       27.91        37.32        10.13         5.03        13.84         2.86 
TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A11A TCGA-DD-A1E9 
        4.24         0.07         0.10        79.73         2.60        90.71 
TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NO TCGA-DD-A73G 
       30.61        33.14        14.24        18.44        61.45       100.96 
TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7PZ TCGA-ED-A82E TCGA-FV-A3I0 TCGA-FV-A3R3 
        0.23         0.20         0.20         0.20         0.20         0.13 
TCGA-G3-A25T TCGA-G3-A25X 
       51.06        58.49 

$`DEL PEAK  4(3P13) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X 
       48.99        46.78        27.52        27.52         2.99        25.32 
TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A3KG 
       23.34         1.12        69.57        44.42         0.26        22.36 
TCGA-BC-A5W4 TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5262 
        9.50         3.95         0.53         0.07         0.39         3.39 
TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 
        3.32         0.10         0.13        37.78        83.57        53.33 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1EA 
      113.00         7.33         0.46        21.76        51.29        79.40 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EG 
       66.31        19.79        75.65         6.71        12.95        45.11 
TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A39V 
       49.15         6.02        29.16        18.35        13.64        21.14 
TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 
       55.69         5.62        19.76        25.81         7.66        70.06 
TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 
       17.59        20.12       102.74       107.11        13.78         0.36 
TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL 
       12.85        73.38        14.07        15.06        39.78        56.25 
TCGA-DD-A4NN TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV 
       29.56        93.67        12.26         0.30        80.75        66.35 
TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F 
       10.98         9.30         7.56        10.98         1.45        27.72 
TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A7PY 
       13.41        12.69        15.85        13.91        13.35         0.20 
TCGA-ED-A7XP TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC 
        0.20        18.74        19.99        11.74        10.98         0.62 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR 
        9.96        11.93        22.85        14.40        32.45        19.10 
TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-FV-A4ZQ 
        8.12         6.38         0.03         0.33        60.36         0.39 
TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z 
        1.22        53.79        28.27        30.74        14.86        21.53 
TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI 
       22.13        25.64         5.92        19.53        19.23        14.70 
TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-K7-A6G5 
       11.97         7.99         4.37         7.76         1.02         4.01 
TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75G TCGA-MI-A75I TCGA-NI-A4U2 
        0.49         9.57         5.10        14.24         8.71        58.88 
TCGA-O8-A75V 
        4.44 

  DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE 
                       0.07                        0.03 
  DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE 
                     100.96                      113.00 
  DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE 
                     11.985                      14.240 
[1] "0.1 - 101.0 (12.0)" "0.0 - 113.0 (14.2)"
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "DEL PEAK  4(3P13) MUTATED"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A113                  TCGA-DD-A114 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "DEL PEAK  4(3P13) MUTATED"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-FV-A495                  TCGA-FV-A496 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-O8-A75V 
"DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "DEL PEAK  4(3P13) MUTATED"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A113                  TCGA-DD-A114 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "DEL PEAK  4(3P13) MUTATED"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-FV-A495                  TCGA-FV-A496 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-O8-A75V 
"DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "DEL PEAK  4(3P13) MUTATED"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A113                  TCGA-DD-A114 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "DEL PEAK  4(3P13) MUTATED"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-FV-A495                  TCGA-FV-A496 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-O8-A75V 
"DEL PEAK  4(3P13) WILD-TYPE" 
[1] "hr=" "1.7"
D32V2, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  4(3P13) MUTATED         5        7         0          7          1
  DEL PEAK  4(3P13) WILD-TYPE      53       29         2         23          3
                             vv
clus                          STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  DEL PEAK  4(3P13) MUTATED            2        0         0         1
  DEL PEAK  4(3P13) WILD-TYPE          3        1         1         1
D32V3, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK  4(3P13) MUTATED    5  9 10  2
  DEL PEAK  4(3P13) WILD-TYPE 56 31 30  6
D32V4, multiclass
    clus
vv   DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE
  T1                         5                          56
  T2                         9                          31
  T3                        10                          30
  T4                         2                           6
D32V5, binary
                             cls
clus                           0  1
  DEL PEAK  4(3P13) MUTATED   16  1
  DEL PEAK  4(3P13) WILD-TYPE 81  2
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(3P13) MUTATED     16    1
  DEL PEAK  4(3P13) WILD-TYPE   81    2
   clus
vv  DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE
  0                        16                          81
  1                         1                           2
                             vv
clus                          M0 M1 MX
  DEL PEAK  4(3P13) MUTATED   20  1  5
  DEL PEAK  4(3P13) WILD-TYPE 95  2 26
D32V6, multiclass
    clus
vv   DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE
  M0                        20                          95
  M1                         1                           2
  MX                         5                          26
D32V7, binary
                             cls
clus                           0  1
  DEL PEAK  4(3P13) MUTATED   15 11
  DEL PEAK  4(3P13) WILD-TYPE 43 80
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(3P13) MUTATED     15   11
  DEL PEAK  4(3P13) WILD-TYPE   43   80
        clus
vv       DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE
  FEMALE                        15                          43
  MALE                          11                          80
                             vv
clus                           R0  R1  R2  RX
  DEL PEAK  4(3P13) MUTATED    22   2   0   2
  DEL PEAK  4(3P13) WILD-TYPE 100   9   1   8
D32V8, multiclass
    clus
vv   DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE
  R0                        22                         100
  R1                         2                           9
  R2                         0                           1
  RX                         2                           8

Clustering(33) Variable = DEL PEAK  5(4P16.3) MUTATION ANALYSIS
D33V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  5(4P16.3) MUTATED   13 11
  DEL PEAK  5(4P16.3) WILD-TYPE 71 52
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                           24                           123 
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                           11                            52 
$`DEL PEAK  5(4P16.3) MUTATED`
TCGA-BC-A10Y TCGA-BC-A112 TCGA-BC-A5W4 TCGA-BC-A69H TCGA-CC-A3MC TCGA-DD-A114 
       23.34         5.03         9.50         3.95         0.13        37.78 
TCGA-DD-A119 TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A4NI 
        7.33         6.02        29.16        55.69         5.62        18.44 
TCGA-DD-A4NJ TCGA-DD-A4NN TCGA-DD-A73A TCGA-ED-A459 TCGA-EP-A2KB TCGA-EP-A2KC 
       15.06        29.56        10.98        13.41        10.98         0.62 
TCGA-FV-A4ZP TCGA-G3-A25U TCGA-G3-A25X TCGA-G3-A3CH TCGA-GJ-A6C0 TCGA-MI-A75G 
       60.36        53.79        58.49        25.64         1.02        14.24 

$`DEL PEAK  5(4P16.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
       48.99        27.91        37.32        10.13        46.78        27.52 
TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 
       27.52         2.99        25.32         1.12        69.57        44.42 
TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5260 
       13.84         0.26        22.36         0.53         0.07         2.86 
TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA 
        0.39         3.39         4.24         3.32         0.10         0.07 
TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A11A 
        0.10        79.73        83.57        53.33       113.00         2.60 
TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB 
        0.46        21.76        51.29        90.71        79.40        66.31 
TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EH 
       19.79        75.65         6.71        12.95        45.11        49.15 
TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 
       18.35        13.64        21.14        19.76        25.81         7.66 
TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 
       70.06        17.59        20.12       102.74       107.11        13.78 
TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF 
        0.36        30.61        33.14        12.85        73.38        14.07 
TCGA-DD-A4NH TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ 
       14.24        39.78        56.25        61.45        93.67        12.26 
TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D 
        0.30        80.75        66.35         9.30         7.56        10.98 
TCGA-DD-A73E TCGA-DD-A73F TCGA-DD-A73G TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 
        1.45        27.72       100.96        12.69        15.85        13.91 
TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7PY TCGA-ED-A7PZ TCGA-ED-A7XP 
       13.35         0.23         0.20         0.20         0.20         0.20 
TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A3JL TCGA-EP-A3RK 
        0.20        18.74        19.99        11.74         9.96        11.93 
TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3I1 
       22.85        14.40        32.45        19.10         0.20         8.12 
TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25S 
        6.38         0.13         0.03         0.33         0.39         1.22 
TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG 
       51.06        28.27        30.74        14.86        21.53        22.13 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL 
        5.92        19.53        19.23        14.70        11.97         7.99 
TCGA-G3-A5SM TCGA-G3-A6UC TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E 
        4.37         7.76         4.01         0.49         9.57         5.10 
TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
        8.71        58.88         4.44 

  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                        60.36                        113.00 
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                       13.825                        14.070 
[1] "0.1 - 60.4 (13.8)"  "0.0 - 113.0 (14.1)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK  5(4P16.3) MUTATED"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "DEL PEAK  5(4P16.3) MUTATED"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK  5(4P16.3) MUTATED"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-O8-A75V 
"DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK  5(4P16.3) MUTATED"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "DEL PEAK  5(4P16.3) MUTATED"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK  5(4P16.3) MUTATED"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-O8-A75V 
"DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK  5(4P16.3) MUTATED"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "DEL PEAK  5(4P16.3) MUTATED"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK  5(4P16.3) MUTATED"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
  "DEL PEAK  5(4P16.3) MUTATED" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"DEL PEAK  5(4P16.3) WILD-TYPE"   "DEL PEAK  5(4P16.3) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
"DEL PEAK  5(4P16.3) WILD-TYPE" "DEL PEAK  5(4P16.3) WILD-TYPE" 
                   TCGA-O8-A75V 
"DEL PEAK  5(4P16.3) WILD-TYPE" 
[1] "hr=" "1.3"
D33V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK  5(4P16.3) MUTATED         8        8         0          5
  DEL PEAK  5(4P16.3) WILD-TYPE      50       28         2         25
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK  5(4P16.3) MUTATED            0          1        1         1
  DEL PEAK  5(4P16.3) WILD-TYPE          4          4        0         0
                               vv
clus                            STAGE IVB
  DEL PEAK  5(4P16.3) MUTATED           0
  DEL PEAK  5(4P16.3) WILD-TYPE         2
D33V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  5(4P16.3) MUTATED   10  8  7  1
  DEL PEAK  5(4P16.3) WILD-TYPE 51 32 33  7
D33V4, multiclass
    clus
vv   DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  T1                          10                            51
  T2                           8                            32
  T3                           7                            33
  T4                           1                             7
D33V5, binary
                               cls
clus                             0  1
  DEL PEAK  5(4P16.3) MUTATED   12  2
  DEL PEAK  5(4P16.3) WILD-TYPE 85  1
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(4P16.3) MUTATED     12    2
  DEL PEAK  5(4P16.3) WILD-TYPE   85    1
   clus
vv  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  0                          12                            85
  1                           2                             1
                               vv
clus                            M0 M1 MX
  DEL PEAK  5(4P16.3) MUTATED   19  1  6
  DEL PEAK  5(4P16.3) WILD-TYPE 96  2 25
D33V6, multiclass
    clus
vv   DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  M0                          19                            96
  M1                           1                             2
  MX                           6                            25
D33V7, binary
                               cls
clus                             0  1
  DEL PEAK  5(4P16.3) MUTATED    7 19
  DEL PEAK  5(4P16.3) WILD-TYPE 51 72
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(4P16.3) MUTATED      7   19
  DEL PEAK  5(4P16.3) WILD-TYPE   51   72
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  FEMALE                           7                            51
  MALE                            19                            72
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK  5(4P16.3) MUTATED    21   2   1   2
  DEL PEAK  5(4P16.3) WILD-TYPE 101   9   0   8
D33V8, multiclass
    clus
vv   DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  R0                          21                           101
  R1                           2                             9
  R2                           1                             0
  RX                           2                             8

Clustering(34) Variable = DEL PEAK  6(4Q24) MUTATION ANALYSIS
D34V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  6(4Q24) MUTATED   35 27
  DEL PEAK  6(4Q24) WILD-TYPE 49 36
  DEL PEAK  6(4Q24) MUTATED DEL PEAK  6(4Q24) WILD-TYPE 
                         62                          85 
  DEL PEAK  6(4Q24) MUTATED DEL PEAK  6(4Q24) WILD-TYPE 
                         27                          36 
$`DEL PEAK  6(4Q24) MUTATED`
TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A112 TCGA-BC-A217 
       27.52        27.52        23.34         1.12         5.03        13.84 
TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-BC-A69H TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5263 
        0.26         9.50         3.95         0.07         0.39         4.24 
TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A119 
        0.10         0.10         0.13        37.78        53.33         7.33 
TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A1EB TCGA-DD-A1EF TCGA-DD-A1EG 
        2.60         0.46        21.76        66.31        12.95        45.11 
TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EL TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A0 
       49.15         6.02        13.64        55.69         5.62        25.81 
TCGA-DD-A3A5 TCGA-DD-A3A9 TCGA-DD-A4ND TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ 
      102.74        30.61        73.38        14.24        18.44        15.06 
TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NQ TCGA-DD-A73B TCGA-DD-A73G TCGA-ED-A459 
       29.56        61.45        12.26         9.30       100.96        13.41 
TCGA-ED-A66X TCGA-ED-A7PX TCGA-ED-A7PY TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-EP-A2KB 
       13.35         0.20         0.20         0.20         0.20        10.98 
TCGA-EP-A2KC TCGA-FV-A3I1 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25S 
        0.62         8.12         0.03         0.33        60.36         1.22 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A5SI TCGA-G3-A5SM TCGA-LG-A6GG 
       58.49        14.86        21.53        14.70         4.37         0.49 
TCGA-MI-A75G TCGA-O8-A75V 
       14.24         4.44 

$`DEL PEAK  6(4Q24) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10W 
       48.99        27.91        37.32        10.13        46.78         2.99 
TCGA-BC-A10X TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A3KG TCGA-BC-A69I TCGA-CC-5260 
       25.32        69.57        44.42        22.36         0.53         2.86 
TCGA-CC-5262 TCGA-CC-A1HT TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A118 
        3.39         3.32         0.07        79.73        83.57       113.00 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       51.29        90.71        79.40        19.79        75.65         6.71 
TCGA-DD-A1EJ TCGA-DD-A1EK TCGA-DD-A39V TCGA-DD-A39Z TCGA-DD-A3A1 TCGA-DD-A3A2 
       29.16        18.35        21.14        19.76         7.66        70.06 
TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A4NA 
       17.59        20.12       107.11        13.78         0.36        33.14 
TCGA-DD-A4NB TCGA-DD-A4NF TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NP TCGA-DD-A4NR 
       12.85        14.07        39.78        56.25        93.67         0.30 
TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E 
       80.75        66.35        10.98         7.56        10.98         1.45 
TCGA-DD-A73F TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66Y TCGA-ED-A82E 
       27.72        12.69        15.85        13.91         0.23         0.20 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS 
       18.74        19.99        11.74         9.96        11.93        22.85 
TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A3R3 
       14.40        32.45        19.10         0.20         6.38         0.13 
TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A3CG 
        0.39        51.06        53.79        28.27        30.74        22.13 
TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SL 
       25.64         5.92        19.53        19.23        11.97         7.99 
TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75I 
        7.76         1.02         4.01         9.57         5.10         8.71 
TCGA-NI-A4U2 
       58.88 

  DEL PEAK  6(4Q24) MUTATED DEL PEAK  6(4Q24) WILD-TYPE 
                       0.03                        0.07 
  DEL PEAK  6(4Q24) MUTATED DEL PEAK  6(4Q24) WILD-TYPE 
                     102.74                      113.00 
  DEL PEAK  6(4Q24) MUTATED DEL PEAK  6(4Q24) WILD-TYPE 
                     12.605                      18.740 
[1] "0.0 - 102.7 (12.6)" "0.1 - 113.0 (18.7)"
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-CC-5258                  TCGA-CC-5260 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-CC-5261                  TCGA-CC-5262 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-FV-A495                  TCGA-FV-A496 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-O8-A75V 
  "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-CC-5258                  TCGA-CC-5260 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-CC-5261                  TCGA-CC-5262 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-FV-A495                  TCGA-FV-A496 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-O8-A75V 
  "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-CC-5258                  TCGA-CC-5260 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-CC-5261                  TCGA-CC-5262 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-FV-A495                  TCGA-FV-A496 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
  "DEL PEAK  6(4Q24) MUTATED"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
  "DEL PEAK  6(4Q24) MUTATED" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
"DEL PEAK  6(4Q24) WILD-TYPE"   "DEL PEAK  6(4Q24) MUTATED" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
"DEL PEAK  6(4Q24) WILD-TYPE" "DEL PEAK  6(4Q24) WILD-TYPE" 
                 TCGA-O8-A75V 
  "DEL PEAK  6(4Q24) MUTATED" 
[1] "hr=" "1.4"
D34V2, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  6(4Q24) MUTATED        24       21         2          9          1
  DEL PEAK  6(4Q24) WILD-TYPE      34       15         0         21          3
                             vv
clus                          STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  DEL PEAK  6(4Q24) MUTATED            0        1         1         1
  DEL PEAK  6(4Q24) WILD-TYPE          5        0         0         1
D34V3, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK  6(4Q24) MUTATED   25 22 14  3
  DEL PEAK  6(4Q24) WILD-TYPE 36 18 26  5
D34V4, multiclass
    clus
vv   DEL PEAK  6(4Q24) MUTATED DEL PEAK  6(4Q24) WILD-TYPE
  T1                        25                          36
  T2                        22                          18
  T3                        14                          26
  T4                         3                           5
D34V5, binary
                             cls
clus                           0  1
  DEL PEAK  6(4Q24) MUTATED   39  1
  DEL PEAK  6(4Q24) WILD-TYPE 58  2
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  6(4Q24) MUTATED     39    1
  DEL PEAK  6(4Q24) WILD-TYPE   58    2
   clus
vv  DEL PEAK  6(4Q24) MUTATED DEL PEAK  6(4Q24) WILD-TYPE
  0                        39                          58
  1                         1                           2
                             vv
clus                          M0 M1 MX
  DEL PEAK  6(4Q24) MUTATED   52  2 10
  DEL PEAK  6(4Q24) WILD-TYPE 63  1 21
D34V6, multiclass
    clus
vv   DEL PEAK  6(4Q24) MUTATED DEL PEAK  6(4Q24) WILD-TYPE
  M0                        52                          63
  M1                         2                           1
  MX                        10                          21
D34V7, binary
                             cls
clus                           0  1
  DEL PEAK  6(4Q24) MUTATED   23 41
  DEL PEAK  6(4Q24) WILD-TYPE 35 50
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  6(4Q24) MUTATED     23   41
  DEL PEAK  6(4Q24) WILD-TYPE   35   50
        clus
vv       DEL PEAK  6(4Q24) MUTATED DEL PEAK  6(4Q24) WILD-TYPE
  FEMALE                        23                          35
  MALE                          41                          50
                             vv
clus                          R0 R1 R2 RX
  DEL PEAK  6(4Q24) MUTATED   51  6  1  6
  DEL PEAK  6(4Q24) WILD-TYPE 71  5  0  4
D34V8, multiclass
    clus
vv   DEL PEAK  6(4Q24) MUTATED DEL PEAK  6(4Q24) WILD-TYPE
  R0                        51                          71
  R1                         6                           5
  R2                         1                           0
  RX                         6                           4

Clustering(35) Variable = DEL PEAK  7(4Q34.3) MUTATION ANALYSIS
D35V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  7(4Q34.3) MUTATED   30 27
  DEL PEAK  7(4Q34.3) WILD-TYPE 54 36
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                           57                            90 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                           27                            36 
$`DEL PEAK  7(4Q34.3) MUTATED`
TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A112 TCGA-BC-A217 TCGA-BC-A3KF 
       10.13        27.52         2.99         5.03        13.84         0.26 
TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-BC-A69H TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-A1HT 
       22.36         9.50         3.95         0.07         0.39         3.32 
TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 
        0.10         0.07         0.10         0.13        79.73        37.78 
TCGA-DD-A116 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A1EF TCGA-DD-A1EG 
       53.33         7.33         2.60         0.46        12.95        45.11 
TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39X TCGA-DD-A39Y 
       49.15         6.02        29.16        13.64        55.69         5.62 
TCGA-DD-A3A0 TCGA-DD-A3A2 TCGA-DD-A3A9 TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ 
       25.81        70.06        30.61        14.24        18.44        15.06 
TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A73B TCGA-ED-A66X TCGA-ED-A7PY TCGA-ED-A7PZ 
       29.56        61.45         9.30        13.35         0.20         0.20 
TCGA-ED-A7XP TCGA-EP-A2KB TCGA-EP-A2KC TCGA-FV-A3I1 TCGA-FV-A496 TCGA-FV-A4ZP 
        0.20        10.98         0.62         8.12         0.33        60.36 
TCGA-G3-A25S TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A5SI TCGA-G3-A5SM 
        1.22        58.49        14.86        21.53        14.70         4.37 
TCGA-MI-A75G TCGA-MI-A75I TCGA-NI-A4U2 
       14.24         8.71        58.88 

$`DEL PEAK  7(4Q34.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10X 
       48.99        27.91        37.32        46.78        27.52        25.32 
TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A69I TCGA-CC-5260 
       23.34         1.12        69.57        44.42         0.53         2.86 
TCGA-CC-5262 TCGA-CC-5263 TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A11C TCGA-DD-A11D 
        3.39         4.24        83.57       113.00        21.76        51.29 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       90.71        79.40        66.31        19.79        75.65         6.71 
TCGA-DD-A1EK TCGA-DD-A39V TCGA-DD-A39Z TCGA-DD-A3A1 TCGA-DD-A3A3 TCGA-DD-A3A4 
       18.35        21.14        19.76         7.66        17.59        20.12 
TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4NB 
      102.74       107.11        13.78         0.36        33.14        12.85 
TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NP TCGA-DD-A4NQ 
       73.38        14.07        39.78        56.25        93.67        12.26 
TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73C TCGA-DD-A73D 
        0.30        80.75        66.35        10.98         7.56        10.98 
TCGA-DD-A73E TCGA-DD-A73F TCGA-DD-A73G TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A5KG 
        1.45        27.72       100.96        13.41        12.69        15.85 
TCGA-ED-A627 TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A26S 
       13.91         0.23         0.20         0.20        18.74        19.99 
TCGA-EP-A2KA TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B 
       11.74         9.96        11.93        22.85        14.40        32.45 
TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A4ZQ 
       19.10         0.20         6.38         0.13         0.03         0.39 
TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A3CG TCGA-G3-A3CH 
       51.06        53.79        28.27        30.74        22.13        25.64 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A6UC 
        5.92        19.53        19.23        11.97         7.99         7.76 
TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-O8-A75V 
        1.02         4.01         0.49         9.57         5.10         4.44 

  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                        79.73                        113.00 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                       10.980                        18.545 
[1] "0.1 - 79.7 (11.0)"  "0.0 - 113.0 (18.5)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-O8-A75V 
"DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-O8-A75V 
"DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-O8-A75V 
"DEL PEAK  7(4Q34.3) WILD-TYPE" 
[1] "hr=" "1.8"
D35V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK  7(4Q34.3) MUTATED        19       18         1         11
  DEL PEAK  7(4Q34.3) WILD-TYPE      39       18         1         19
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK  7(4Q34.3) MUTATED            1          1        1         1
  DEL PEAK  7(4Q34.3) WILD-TYPE          3          4        0         0
                               vv
clus                            STAGE IVB
  DEL PEAK  7(4Q34.3) MUTATED           1
  DEL PEAK  7(4Q34.3) WILD-TYPE         1
D35V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  7(4Q34.3) MUTATED   21 19 16  3
  DEL PEAK  7(4Q34.3) WILD-TYPE 40 21 24  5
D35V4, multiclass
    clus
vv   DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  T1                          21                            40
  T2                          19                            21
  T3                          16                            24
  T4                           3                             5
D35V5, binary
                               cls
clus                             0  1
  DEL PEAK  7(4Q34.3) MUTATED   35  2
  DEL PEAK  7(4Q34.3) WILD-TYPE 62  1
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(4Q34.3) MUTATED     35    2
  DEL PEAK  7(4Q34.3) WILD-TYPE   62    1
   clus
vv  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  0                          35                            62
  1                           2                             1
                               vv
clus                            M0 M1 MX
  DEL PEAK  7(4Q34.3) MUTATED   47  2 10
  DEL PEAK  7(4Q34.3) WILD-TYPE 68  1 21
D35V6, multiclass
    clus
vv   DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  M0                          47                            68
  M1                           2                             1
  MX                          10                            21
D35V7, binary
                               cls
clus                             0  1
  DEL PEAK  7(4Q34.3) MUTATED   20 39
  DEL PEAK  7(4Q34.3) WILD-TYPE 38 52
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(4Q34.3) MUTATED     20   39
  DEL PEAK  7(4Q34.3) WILD-TYPE   38   52
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  FEMALE                          20                            38
  MALE                            39                            52
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  7(4Q34.3) MUTATED   48  5  1  4
  DEL PEAK  7(4Q34.3) WILD-TYPE 74  6  0  6
D35V8, multiclass
    clus
vv   DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  R0                          48                            74
  R1                           5                             6
  R2                           1                             0
  RX                           4                             6

Clustering(36) Variable = DEL PEAK  8(6Q16.3) MUTATION ANALYSIS
D36V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  8(6Q16.3) MUTATED   33 23
  DEL PEAK  8(6Q16.3) WILD-TYPE 51 40
  DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE 
                           56                            91 
  DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE 
                           23                            40 
$`DEL PEAK  8(6Q16.3) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-BC-A69I TCGA-CC-5260 
       37.32        10.13         0.26         9.50         0.53         2.86 
TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A118 
        0.10         0.07        79.73        37.78        83.57       113.00 
TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EC TCGA-DD-A1EE 
        7.33         2.60        21.76        90.71        19.79         6.71 
TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EK 
       12.95        45.11        49.15         6.02        29.16        18.35 
TCGA-DD-A39X TCGA-DD-A39Z TCGA-DD-A3A1 TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4NH 
       55.69        19.76         7.66         0.36        33.14        14.24 
TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NS TCGA-DD-A73E TCGA-DD-A73F TCGA-ED-A66Y 
       15.06        39.78        80.75         1.45        27.72         0.23 
TCGA-ED-A7PX TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A3RK TCGA-ES-A2HS TCGA-FV-A23B 
        0.20         0.20        18.74        11.93        22.85        32.45 
TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25T 
       19.10         0.20         6.38        60.36         1.22        51.06 
TCGA-G3-A25X TCGA-G3-A3CG TCGA-G3-A5SL TCGA-G3-A6UC TCGA-LG-A6GG TCGA-MI-A75E 
       58.49        22.13         7.99         7.76         0.49         5.10 
TCGA-MI-A75G TCGA-MI-A75I 
       14.24         8.71 

$`DEL PEAK  8(6Q16.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W 
       48.99        27.91        46.78        27.52        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
       25.32        23.34         1.12        69.57         5.03        44.42 
TCGA-BC-A217 TCGA-BC-A3KG TCGA-BC-A69H TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5262 
       13.84        22.36         3.95         0.07         0.39         3.39 
TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A116 TCGA-DD-A11B 
        4.24         3.32         0.10         0.13        53.33         0.46 
TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1ED TCGA-DD-A1EL TCGA-DD-A39V 
       51.29        79.40        66.31        75.65        13.64        21.14 
TCGA-DD-A39Y TCGA-DD-A3A0 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 
        5.62        25.81        70.06        17.59        20.12       102.74 
TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A9 TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF 
      107.11        13.78        30.61        12.85        73.38        14.07 
TCGA-DD-A4NI TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ 
       18.44        56.25        29.56        61.45        93.67        12.26 
TCGA-DD-A4NR TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D 
        0.30        66.35        10.98         9.30         7.56        10.98 
TCGA-DD-A73G TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X 
      100.96        13.41        12.69        15.85        13.91        13.35 
TCGA-ED-A7PY TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB 
        0.20         0.20         0.20        19.99        11.74        10.98 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-ES-A2HT TCGA-FV-A3I1 TCGA-FV-A3R3 TCGA-FV-A495 
        0.62         9.96        14.40         8.12         0.13         0.03 
TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y 
        0.33         0.39        53.79        28.27        30.74        14.86 
TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI 
       21.53        25.64         5.92        19.53        19.23        14.70 
TCGA-G3-A5SJ TCGA-G3-A5SM TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-MI-A75C TCGA-NI-A4U2 
       11.97         4.37         1.02         4.01         9.57        58.88 
TCGA-O8-A75V 
        4.44 

  DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE 
                       113.00                        107.11 
  DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE 
                        14.24                         13.91 
[1] "0.1 - 113.0 (14.2)" "0.0 - 107.1 (13.9)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-O8-A75V 
"DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-O8-A75V 
"DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-O8-A75V 
"DEL PEAK  8(6Q16.3) WILD-TYPE" 
[1] "hr=" "1.1"
D36V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK  8(6Q16.3) MUTATED        19       12         1         13
  DEL PEAK  8(6Q16.3) WILD-TYPE      39       24         1         17
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK  8(6Q16.3) MUTATED            2          4        1         0
  DEL PEAK  8(6Q16.3) WILD-TYPE          2          1        0         1
                               vv
clus                            STAGE IVB
  DEL PEAK  8(6Q16.3) MUTATED           1
  DEL PEAK  8(6Q16.3) WILD-TYPE         1
D36V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  8(6Q16.3) MUTATED   20 15 18  3
  DEL PEAK  8(6Q16.3) WILD-TYPE 41 25 22  5
D36V4, multiclass
    clus
vv   DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE
  T1                          20                            41
  T2                          15                            25
  T3                          18                            22
  T4                           3                             5
D36V5, binary
                               cls
clus                             0  1
  DEL PEAK  8(6Q16.3) MUTATED   37  2
  DEL PEAK  8(6Q16.3) WILD-TYPE 60  1
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(6Q16.3) MUTATED     37    2
  DEL PEAK  8(6Q16.3) WILD-TYPE   60    1
   clus
vv  DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE
  0                          37                            60
  1                           2                             1
                               vv
clus                            M0 M1 MX
  DEL PEAK  8(6Q16.3) MUTATED   47  2  7
  DEL PEAK  8(6Q16.3) WILD-TYPE 68  1 24
D36V6, multiclass
    clus
vv   DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE
  M0                          47                            68
  M1                           2                             1
  MX                           7                            24
D36V7, binary
                               cls
clus                             0  1
  DEL PEAK  8(6Q16.3) MUTATED   25 31
  DEL PEAK  8(6Q16.3) WILD-TYPE 33 60
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(6Q16.3) MUTATED     25   31
  DEL PEAK  8(6Q16.3) WILD-TYPE   33   60
        clus
vv       DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE
  FEMALE                          25                            33
  MALE                            31                            60
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  8(6Q16.3) MUTATED   46  5  1  3
  DEL PEAK  8(6Q16.3) WILD-TYPE 76  6  0  7
D36V8, multiclass
    clus
vv   DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE
  R0                          46                            76
  R1                           5                             6
  R2                           1                             0
  RX                           3                             7

Clustering(37) Variable = DEL PEAK  9(6Q27) MUTATION ANALYSIS
D37V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  9(6Q27) MUTATED   34 24
  DEL PEAK  9(6Q27) WILD-TYPE 50 39
  DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE 
                         58                          89 
  DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE 
                         24                          39 
$`DEL PEAK  9(6Q27) MUTATED`
TCGA-BC-A10Q TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-BC-A69I TCGA-CC-5260 TCGA-CC-A1HT 
       37.32         0.26         9.50         0.53         2.86         3.32 
TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A118 
        0.10         0.07         0.13        37.78        83.57       113.00 
TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EE TCGA-DD-A1EG 
        7.33         2.60        21.76        90.71         6.71        45.11 
TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EK TCGA-DD-A39X TCGA-DD-A39Z 
       49.15         6.02        29.16        18.35        55.69        19.76 
TCGA-DD-A3A0 TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NK 
       25.81         0.36        33.14        14.24        15.06        39.78 
TCGA-DD-A4NN TCGA-DD-A4NS TCGA-DD-A73E TCGA-ED-A459 TCGA-ED-A66Y TCGA-ED-A7PX 
       29.56        80.75         1.45        13.41         0.23         0.20 
TCGA-ED-A7PZ TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A3RK TCGA-ES-A2HS TCGA-FV-A23B 
        0.20         0.20        18.74        11.93        22.85        32.45 
TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25S 
       19.10         0.20         6.38         0.33        60.36         1.22 
TCGA-G3-A25T TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A3CG TCGA-G3-A5SL TCGA-G3-A6UC 
       51.06        58.49        14.86        22.13         7.99         7.76 
TCGA-LG-A6GG TCGA-MI-A75E TCGA-MI-A75G TCGA-MI-A75I 
        0.49         5.10        14.24         8.71 

$`DEL PEAK  9(6Q27) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U 
       48.99        27.91        10.13        46.78        27.52        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 
        2.99        25.32        23.34         1.12        69.57         5.03 
TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG TCGA-BC-A69H TCGA-CC-5258 TCGA-CC-5261 
       44.42        13.84        22.36         3.95         0.07         0.39 
TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A116 TCGA-DD-A11B 
        3.39         4.24         0.10        79.73        53.33         0.46 
TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EF 
       51.29        79.40        66.31        19.79        75.65        12.95 
TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 
       13.64        21.14         5.62         7.66        70.06        17.59 
TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A9 TCGA-DD-A4NB 
       20.12       102.74       107.11        13.78        30.61        12.85 
TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NI TCGA-DD-A4NL TCGA-DD-A4NO TCGA-DD-A4NP 
       73.38        14.07        18.44        56.25        61.45        93.67 
TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C 
       12.26         0.30        66.35        10.98         9.30         7.56 
TCGA-DD-A73D TCGA-DD-A73F TCGA-DD-A73G TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 
       10.98        27.72       100.96        12.69        15.85        13.91 
TCGA-ED-A66X TCGA-ED-A7PY TCGA-ED-A7XP TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB 
       13.35         0.20         0.20        19.99        11.74        10.98 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-ES-A2HT TCGA-FV-A3I1 TCGA-FV-A3R3 TCGA-FV-A495 
        0.62         9.96        14.40         8.12         0.13         0.03 
TCGA-FV-A4ZQ TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Z TCGA-G3-A3CH 
        0.39        53.79        28.27        30.74        21.53        25.64 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SM 
        5.92        19.53        19.23        14.70        11.97         4.37 
TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-MI-A75C TCGA-NI-A4U2 TCGA-O8-A75V 
        1.02         4.01         9.57        58.88         4.44 

  DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE 
                       0.07                        0.03 
  DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE 
                     113.00                      107.11 
  DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE 
                     13.825                      14.070 
[1] "0.1 - 113.0 (13.8)" "0.0 - 107.1 (14.1)"
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-FV-A495                  TCGA-FV-A496 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-O8-A75V 
"DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-FV-A495                  TCGA-FV-A496 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-O8-A75V 
"DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-BC-A69H                  TCGA-BC-A69I 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EG 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EK 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A4NB                  TCGA-DD-A4ND 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NH 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A4NI                  TCGA-DD-A4NJ 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A4NK                  TCGA-DD-A4NL 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A4NN                  TCGA-DD-A4NO 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A4NP                  TCGA-DD-A4NQ 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A4NR                  TCGA-DD-A4NS 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A4NV                  TCGA-DD-A73A 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A73B                  TCGA-DD-A73C 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-DD-A73D                  TCGA-DD-A73E 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-DD-A73F                  TCGA-DD-A73G 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-ED-A459                  TCGA-ED-A4XI 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-ED-A627 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-ED-A66X                  TCGA-ED-A66Y 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-ED-A7PX                  TCGA-ED-A7PY 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-ED-A7PZ                  TCGA-ED-A7XP 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-ED-A82E                  TCGA-EP-A12J 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-FV-A3I0                  TCGA-FV-A3I1 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-FV-A3R2                  TCGA-FV-A3R3 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-FV-A495                  TCGA-FV-A496 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-FV-A4ZP                  TCGA-FV-A4ZQ 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-G3-A3CK                  TCGA-G3-A5SI 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SL 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-G3-A5SM                  TCGA-G3-A6UC 
"DEL PEAK  9(6Q27) WILD-TYPE"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-GJ-A6C0                  TCGA-K7-A6G5 
"DEL PEAK  9(6Q27) WILD-TYPE" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-LG-A6GG                  TCGA-MI-A75C 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-MI-A75E                  TCGA-MI-A75G 
  "DEL PEAK  9(6Q27) MUTATED"   "DEL PEAK  9(6Q27) MUTATED" 
                 TCGA-MI-A75I                  TCGA-NI-A4U2 
  "DEL PEAK  9(6Q27) MUTATED" "DEL PEAK  9(6Q27) WILD-TYPE" 
                 TCGA-O8-A75V 
"DEL PEAK  9(6Q27) WILD-TYPE" 
[1] "hr=" "1.1"
D37V2, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  9(6Q27) MUTATED        20       13         1         14          2
  DEL PEAK  9(6Q27) WILD-TYPE      38       23         1         16          2
                             vv
clus                          STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  DEL PEAK  9(6Q27) MUTATED            4        1         0         1
  DEL PEAK  9(6Q27) WILD-TYPE          1        0         1         1
D37V3, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK  9(6Q27) MUTATED   21 16 18  3
  DEL PEAK  9(6Q27) WILD-TYPE 40 24 22  5
D37V4, multiclass
    clus
vv   DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE
  T1                        21                          40
  T2                        16                          24
  T3                        18                          22
  T4                         3                           5
D37V5, binary
                             cls
clus                           0  1
  DEL PEAK  9(6Q27) MUTATED   37  2
  DEL PEAK  9(6Q27) WILD-TYPE 60  1
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  9(6Q27) MUTATED     37    2
  DEL PEAK  9(6Q27) WILD-TYPE   60    1
   clus
vv  DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE
  0                        37                          60
  1                         2                           1
                             vv
clus                          M0 M1 MX
  DEL PEAK  9(6Q27) MUTATED   50  2  6
  DEL PEAK  9(6Q27) WILD-TYPE 65  1 25
D37V6, multiclass
    clus
vv   DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE
  M0                        50                          65
  M1                         2                           1
  MX                         6                          25
D37V7, binary
                             cls
clus                           0  1
  DEL PEAK  9(6Q27) MUTATED   23 35
  DEL PEAK  9(6Q27) WILD-TYPE 35 56
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  9(6Q27) MUTATED     23   35
  DEL PEAK  9(6Q27) WILD-TYPE   35   56
        clus
vv       DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE
  FEMALE                        23                          35
  MALE                          35                          56
                             vv
clus                          R0 R1 R2 RX
  DEL PEAK  9(6Q27) MUTATED   47  5  1  3
  DEL PEAK  9(6Q27) WILD-TYPE 75  6  0  7
D37V8, multiclass
    clus
vv   DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE
  R0                        47                          75
  R1                         5                           6
  R2                         1                           0
  RX                         3                           7

Clustering(38) Variable = DEL PEAK 10(8P23.2) MUTATION ANALYSIS
D38V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 10(8P23.2) MUTATED   52 44
  DEL PEAK 10(8P23.2) WILD-TYPE 32 19
  DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE 
                           96                            51 
  DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE 
                           44                            19 
$`DEL PEAK 10(8P23.2) MUTATED`
TCGA-BC-4072 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A112 
       48.99        10.13        46.78        27.52        27.52         5.03 
TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A69H TCGA-BC-A69I 
       44.42        13.84         0.26        22.36         3.95         0.53 
TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3M9 
        0.07         0.39         3.39         4.24         3.32         0.10 
TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 
        0.13        79.73        83.57        53.33       113.00         7.33 
TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EI 
       21.76        90.71         6.71        12.95        45.11         6.02 
TCGA-DD-A1EJ TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Y 
       29.16        18.35        13.64        21.14        55.69         5.62 
TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A3 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 
       19.76        25.81        17.59        13.78         0.36        30.61 
TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ 
       33.14        73.38        14.07        14.24        18.44        15.06 
TCGA-DD-A4NK TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV 
       39.78        29.56        61.45         0.30        80.75        66.35 
TCGA-DD-A73A TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F TCGA-DD-A73G 
       10.98         7.56        10.98         1.45        27.72       100.96 
TCGA-ED-A459 TCGA-ED-A66X TCGA-ED-A7PY TCGA-ED-A7PZ TCGA-EP-A12J TCGA-EP-A26S 
       13.41        13.35         0.20         0.20        18.74        19.99 
TCGA-EP-A2KA TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT 
       11.74         0.62         9.96        11.93        22.85        14.40 
TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A495 TCGA-FV-A4ZP 
       19.10         0.20         8.12         6.38         0.03        60.36 
TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y 
        0.39         1.22        28.27        30.74        58.49        14.86 
TCGA-G3-A3CG TCGA-G3-A3CJ TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A6UC TCGA-GJ-A6C0 
       22.13        19.53        11.97         7.99         7.76         1.02 
TCGA-K7-A6G5 TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
        4.01         9.57         5.10         8.71        58.88         4.44 

$`DEL PEAK 10(8P23.2) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z 
       27.91        37.32         2.99        25.32        23.34         1.12 
TCGA-BC-A110 TCGA-BC-A5W4 TCGA-CC-5260 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-DD-A114 
       69.57         9.50         2.86         0.07         0.10        37.78 
TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC 
        2.60         0.46        51.29        79.40        66.31        19.79 
TCGA-DD-A1ED TCGA-DD-A1EH TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A4 TCGA-DD-A3A5 
       75.65        49.15         7.66        70.06        20.12       102.74 
TCGA-DD-A3A6 TCGA-DD-A4NB TCGA-DD-A4NL TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A73B 
      107.11        12.85        56.25        93.67        12.26         9.30 
TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7XP 
       12.69        15.85        13.91         0.23         0.20         0.20 
TCGA-ED-A82E TCGA-EP-A2KB TCGA-FV-A23B TCGA-FV-A3R3 TCGA-FV-A496 TCGA-G3-A25T 
        0.20        10.98        32.45         0.13         0.33        51.06 
TCGA-G3-A25U TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CK TCGA-G3-A5SI 
       53.79        21.53        25.64         5.92        19.23        14.70 
TCGA-G3-A5SM TCGA-LG-A6GG TCGA-MI-A75G 
        4.37         0.49        14.24 

  DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE 
                         0.03                          0.07 
  DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE 
                       113.00                        107.11 
  DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE 
                        13.81                         14.70 
[1] "0.0 - 113.0 (13.8)" "0.1 - 107.1 (14.7)"
                   TCGA-BC-4072                    TCGA-BC-4073 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-O8-A75V 
  "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-O8-A75V 
  "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-O8-A75V 
  "DEL PEAK 10(8P23.2) MUTATED" 
[1] "hr=" "1.5"
D38V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 10(8P23.2) MUTATED        38       23         0         18
  DEL PEAK 10(8P23.2) WILD-TYPE      20       13         2         12
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 10(8P23.2) MUTATED            4          4        1         1
  DEL PEAK 10(8P23.2) WILD-TYPE          0          1        0         0
                               vv
clus                            STAGE IVB
  DEL PEAK 10(8P23.2) MUTATED           2
  DEL PEAK 10(8P23.2) WILD-TYPE         0
D38V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 10(8P23.2) MUTATED   40 26 26  5
  DEL PEAK 10(8P23.2) WILD-TYPE 21 14 14  3
D38V4, multiclass
    clus
vv   DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  T1                          40                            21
  T2                          26                            14
  T3                          26                            14
  T4                           5                             3
D38V5, binary
                               cls
clus                             0  1
  DEL PEAK 10(8P23.2) MUTATED   58  3
  DEL PEAK 10(8P23.2) WILD-TYPE 39  0
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(8P23.2) MUTATED     58    3
  DEL PEAK 10(8P23.2) WILD-TYPE   39    0
   clus
vv  DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  0                          58                            39
  1                           3                             0
                               vv
clus                            M0 M1 MX
  DEL PEAK 10(8P23.2) MUTATED   72  3 22
  DEL PEAK 10(8P23.2) WILD-TYPE 43  0  9
D38V6, multiclass
    clus
vv   DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  M0                          72                            43
  M1                           3                             0
  MX                          22                             9
D38V7, binary
                               cls
clus                             0  1
  DEL PEAK 10(8P23.2) MUTATED   34 63
  DEL PEAK 10(8P23.2) WILD-TYPE 24 28
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(8P23.2) MUTATED     34   63
  DEL PEAK 10(8P23.2) WILD-TYPE   24   28
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  FEMALE                          34                            24
  MALE                            63                            28
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 10(8P23.2) MUTATED   77  7  1  7
  DEL PEAK 10(8P23.2) WILD-TYPE 45  4  0  3
D38V8, multiclass
    clus
vv   DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  R0                          77                            45
  R1                           7                             4
  R2                           1                             0
  RX                           7                             3

Clustering(39) Variable = DEL PEAK 11(9P21.3) MUTATION ANALYSIS
D39V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 11(9P21.3) MUTATED   29 27
  DEL PEAK 11(9P21.3) WILD-TYPE 55 36
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           56                            91 
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           27                            36 
$`DEL PEAK 11(9P21.3) MUTATED`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U 
       48.99        27.91        37.32        10.13        46.78        27.52 
TCGA-BC-A112 TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-BC-A69H TCGA-CC-5258 TCGA-CC-5263 
        5.03         0.26         9.50         3.95         0.07         4.24 
TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A115 
        3.32         0.10         0.10         0.13        79.73        83.57 
TCGA-DD-A116 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A1EF 
       53.33         7.33         2.60         0.46        21.76        12.95 
TCGA-DD-A1EG TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39X TCGA-DD-A39Y 
       45.11         6.02        29.16        13.64        55.69         5.62 
TCGA-DD-A3A0 TCGA-DD-A3A9 TCGA-DD-A4ND TCGA-DD-A4NI TCGA-DD-A4NO TCGA-DD-A73F 
       25.81        30.61        73.38        18.44        61.45        27.72 
TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A66X TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-ED-A82E 
       13.41        12.69        13.35         0.20         0.20         0.20 
TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3RK TCGA-FV-A23B TCGA-FV-A3I0 
       11.74        10.98         0.62        11.93        32.45         0.20 
TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A3CJ 
        8.12         6.38        60.36         1.22        51.06        19.53 
TCGA-MI-A75G TCGA-MI-A75I 
       14.24         8.71 

$`DEL PEAK 11(9P21.3) WILD-TYPE`
TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 
       27.52         2.99        25.32        23.34         1.12        69.57 
TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG TCGA-BC-A69I TCGA-CC-5260 TCGA-CC-5261 
       44.42        13.84        22.36         0.53         2.86         0.39 
TCGA-CC-5262 TCGA-CC-A3MA TCGA-DD-A114 TCGA-DD-A118 TCGA-DD-A11D TCGA-DD-A1E9 
        3.39         0.07        37.78       113.00        51.29        90.71 
TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH 
       79.40        66.31        19.79        75.65         6.71        49.15 
TCGA-DD-A1EK TCGA-DD-A39V TCGA-DD-A39Z TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 
       18.35        21.14        19.76         7.66        70.06        17.59 
TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A4NA 
       20.12       102.74       107.11        13.78         0.36        33.14 
TCGA-DD-A4NB TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL 
       12.85        14.07        14.24        15.06        39.78        56.25 
TCGA-DD-A4NN TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV 
       29.56        93.67        12.26         0.30        80.75        66.35 
TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73G 
       10.98         9.30         7.56        10.98         1.45       100.96 
TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7PY TCGA-EP-A12J 
       15.85        13.91         0.23         0.20         0.20        18.74 
TCGA-EP-A26S TCGA-EP-A3JL TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 
       19.99         9.96        22.85        14.40        19.10         0.13 
TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W 
        0.03         0.33         0.39        53.79        28.27        30.74 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
       58.49        14.86        21.53        22.13        25.64         5.92 
TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM TCGA-G3-A6UC 
       19.23        14.70        11.97         7.99         4.37         7.76 
TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-NI-A4U2 
        1.02         4.01         0.49         9.57         5.10        58.88 
TCGA-O8-A75V 
        4.44 

  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                        83.57                        113.00 
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                        12.31                         15.06 
[1] "0.1 - 83.6 (12.3)"  "0.0 - 113.0 (15.1)"
                   TCGA-BC-4072                    TCGA-BC-4073 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-O8-A75V 
"DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-O8-A75V 
"DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-O8-A75V 
"DEL PEAK 11(9P21.3) WILD-TYPE" 
[1] "hr=" "1.6"
D39V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 11(9P21.3) MUTATED        17       14         0         16
  DEL PEAK 11(9P21.3) WILD-TYPE      41       22         2         14
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 11(9P21.3) MUTATED            0          1        1         1
  DEL PEAK 11(9P21.3) WILD-TYPE          4          4        0         0
                               vv
clus                            STAGE IVB
  DEL PEAK 11(9P21.3) MUTATED           1
  DEL PEAK 11(9P21.3) WILD-TYPE         1
D39V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 11(9P21.3) MUTATED   19 17 20  1
  DEL PEAK 11(9P21.3) WILD-TYPE 42 23 20  7
D39V4, multiclass
    clus
vv   DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  T1                          19                            42
  T2                          17                            23
  T3                          20                            20
  T4                           1                             7
D39V5, binary
                               cls
clus                             0  1
  DEL PEAK 11(9P21.3) MUTATED   34  2
  DEL PEAK 11(9P21.3) WILD-TYPE 63  1
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(9P21.3) MUTATED     34    2
  DEL PEAK 11(9P21.3) WILD-TYPE   63    1
   clus
vv  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  0                          34                            63
  1                           2                             1
                               vv
clus                            M0 M1 MX
  DEL PEAK 11(9P21.3) MUTATED   41  2 14
  DEL PEAK 11(9P21.3) WILD-TYPE 74  1 17
D39V6, multiclass
    clus
vv   DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  M0                          41                            74
  M1                           2                             1
  MX                          14                            17
D39V7, binary
                               cls
clus                             0  1
  DEL PEAK 11(9P21.3) MUTATED   19 38
  DEL PEAK 11(9P21.3) WILD-TYPE 39 53
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(9P21.3) MUTATED     19   38
  DEL PEAK 11(9P21.3) WILD-TYPE   39   53
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  FEMALE                          19                            39
  MALE                            38                            53
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 11(9P21.3) MUTATED   43  7  1  4
  DEL PEAK 11(9P21.3) WILD-TYPE 79  4  0  6
D39V8, multiclass
    clus
vv   DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  R0                          43                            79
  R1                           7                             4
  R2                           1                             0
  RX                           4                             6

Clustering(40) Variable = DEL PEAK 12(9Q34.2) MUTATION ANALYSIS
D40V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 12(9Q34.2) MUTATED   31 20
  DEL PEAK 12(9Q34.2) WILD-TYPE 53 43
  DEL PEAK 12(9Q34.2) MUTATED DEL PEAK 12(9Q34.2) WILD-TYPE 
                           51                            96 
  DEL PEAK 12(9Q34.2) MUTATED DEL PEAK 12(9Q34.2) WILD-TYPE 
                           20                            43 
$`DEL PEAK 12(9Q34.2) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A112 TCGA-BC-A217 
       37.32        10.13        46.78        27.52         5.03        13.84 
TCGA-BC-A5W4 TCGA-BC-A69H TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-A1HT TCGA-CC-A3M9 
        9.50         3.95         0.07         2.86         3.32         0.10 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A116 TCGA-DD-A119 TCGA-DD-A11A 
        0.10         0.13        79.73        53.33         7.33         2.60 
TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A1EB TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EH 
        0.46        21.76        66.31        12.95        45.11        49.15 
TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EK TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A9 
        6.02        29.16        18.35        55.69         5.62        30.61 
TCGA-DD-A4NA TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NO TCGA-DD-A73F TCGA-ED-A459 
       33.14        18.44        15.06        61.45        27.72        13.41 
TCGA-ED-A66X TCGA-ED-A7PX TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-EP-A3RK TCGA-FV-A3I0 
       13.35         0.20         0.20         0.20        11.93         0.20 
TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A496 TCGA-G3-A25S TCGA-G3-A25T 
        8.12         6.38         0.13         0.33         1.22        51.06 
TCGA-G3-A3CH TCGA-MI-A75G TCGA-MI-A75I 
       25.64        14.24         8.71 

$`DEL PEAK 12(9Q34.2) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y 
       48.99        27.91        27.52         2.99        25.32        23.34 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A69I 
        1.12        69.57        44.42         0.26        22.36         0.53 
TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A3MA TCGA-DD-A114 TCGA-DD-A115 
        0.39         3.39         4.24         0.07        37.78        83.57 
TCGA-DD-A118 TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EC TCGA-DD-A1ED 
      113.00        51.29        90.71        79.40        19.79        75.65 
TCGA-DD-A1EE TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 
        6.71        13.64        21.14        19.76        25.81         7.66 
TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 
       70.06        17.59        20.12       102.74       107.11        13.78 
TCGA-DD-A3A8 TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NK 
        0.36        12.85        73.38        14.07        14.24        39.78 
TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NS 
       56.25        29.56        93.67        12.26         0.30        80.75 
TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E 
       66.35        10.98         9.30         7.56        10.98         1.45 
TCGA-DD-A73G TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66Y TCGA-ED-A7PY 
      100.96        12.69        15.85        13.91         0.23         0.20 
TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC 
        0.20        18.74        19.99        11.74        10.98         0.62 
TCGA-EP-A3JL TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A495 
        9.96        22.85        14.40        32.45        19.10         0.03 
TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X 
       60.36         0.39        53.79        28.27        30.74        58.49 
TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
       14.86        21.53        22.13         5.92        19.53        19.23 
TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM TCGA-G3-A6UC TCGA-GJ-A6C0 
       14.70        11.97         7.99         4.37         7.76         1.02 
TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-NI-A4U2 TCGA-O8-A75V 
        4.01         0.49         9.57         5.10        58.88         4.44 

  DEL PEAK 12(9Q34.2) MUTATED DEL PEAK 12(9Q34.2) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK 12(9Q34.2) MUTATED DEL PEAK 12(9Q34.2) WILD-TYPE 
                        79.73                        113.00 
  DEL PEAK 12(9Q34.2) MUTATED DEL PEAK 12(9Q34.2) WILD-TYPE 
                       11.930                        15.355 
[1] "0.1 - 79.7 (11.9)"  "0.0 - 113.0 (15.4)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-O8-A75V 
"DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-O8-A75V 
"DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-BC-A69H                    TCGA-BC-A69I 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EG 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EK 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A4NB                    TCGA-DD-A4ND 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NH 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NI                    TCGA-DD-A4NJ 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A4NK                    TCGA-DD-A4NL 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NN                    TCGA-DD-A4NO 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-DD-A4NP                    TCGA-DD-A4NQ 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NR                    TCGA-DD-A4NS 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NV                    TCGA-DD-A73A 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A73B                    TCGA-DD-A73C 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A73D                    TCGA-DD-A73E 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A73F                    TCGA-DD-A73G 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A459                    TCGA-ED-A4XI 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-ED-A627 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A66X                    TCGA-ED-A66Y 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A7PX                    TCGA-ED-A7PY 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A7PZ                    TCGA-ED-A7XP 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-ED-A82E                    TCGA-EP-A12J 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3I1 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-FV-A3R2                    TCGA-FV-A3R3 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-FV-A495                    TCGA-FV-A496 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-FV-A4ZP                    TCGA-FV-A4ZQ 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK 12(9Q34.2) MUTATED"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A3CK                    TCGA-G3-A5SI 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SL 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A5SM                    TCGA-G3-A6UC 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-GJ-A6C0                    TCGA-K7-A6G5 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-LG-A6GG                    TCGA-MI-A75C 
"DEL PEAK 12(9Q34.2) WILD-TYPE" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-MI-A75E                    TCGA-MI-A75G 
"DEL PEAK 12(9Q34.2) WILD-TYPE"   "DEL PEAK 12(9Q34.2) MUTATED" 
                   TCGA-MI-A75I                    TCGA-NI-A4U2 
  "DEL PEAK 12(9Q34.2) MUTATED" "DEL PEAK 12(9Q34.2) WILD-TYPE" 
                   TCGA-O8-A75V 
"DEL PEAK 12(9Q34.2) WILD-TYPE" 
[1] "hr=" "1.3"
D40V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 12(9Q34.2) MUTATED        15       13         1         10
  DEL PEAK 12(9Q34.2) WILD-TYPE      43       23         1         20
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 12(9Q34.2) MUTATED            0          3        1         0
  DEL PEAK 12(9Q34.2) WILD-TYPE          4          2        0         1
                               vv
clus                            STAGE IVB
  DEL PEAK 12(9Q34.2) MUTATED           2
  DEL PEAK 12(9Q34.2) WILD-TYPE         0
D40V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 12(9Q34.2) MUTATED   16 17 15  3
  DEL PEAK 12(9Q34.2) WILD-TYPE 45 23 25  5
D40V4, multiclass
    clus
vv   DEL PEAK 12(9Q34.2) MUTATED DEL PEAK 12(9Q34.2) WILD-TYPE
  T1                          16                            45
  T2                          17                            23
  T3                          15                            25
  T4                           3                             5
D40V5, binary
                               cls
clus                             0  1
  DEL PEAK 12(9Q34.2) MUTATED   30  2
  DEL PEAK 12(9Q34.2) WILD-TYPE 67  1
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(9Q34.2) MUTATED     30    2
  DEL PEAK 12(9Q34.2) WILD-TYPE   67    1
   clus
vv  DEL PEAK 12(9Q34.2) MUTATED DEL PEAK 12(9Q34.2) WILD-TYPE
  0                          30                            67
  1                           2                             1
                               vv
clus                            M0 M1 MX
  DEL PEAK 12(9Q34.2) MUTATED   38  3 10
  DEL PEAK 12(9Q34.2) WILD-TYPE 77  0 21
D40V6, multiclass
    clus
vv   DEL PEAK 12(9Q34.2) MUTATED DEL PEAK 12(9Q34.2) WILD-TYPE
  M0                          38                            77
  M1                           3                             0
  MX                          10                            21
D40V7, binary
                               cls
clus                             0  1
  DEL PEAK 12(9Q34.2) MUTATED   21 30
  DEL PEAK 12(9Q34.2) WILD-TYPE 37 61
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(9Q34.2) MUTATED     21   30
  DEL PEAK 12(9Q34.2) WILD-TYPE   37   61
        clus
vv       DEL PEAK 12(9Q34.2) MUTATED DEL PEAK 12(9Q34.2) WILD-TYPE
  FEMALE                          21                            37
  MALE                            30                            61
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 12(9Q34.2) MUTATED   40  4  1  4
  DEL PEAK 12(9Q34.2) WILD-TYPE 82  7  0  6
D40V8, multiclass
    clus
vv   DEL PEAK 12(9Q34.2) MUTATED DEL PEAK 12(9Q34.2) WILD-TYPE
  R0                          40                            82
  R1                           4                             7
  R2                           1                             0
  RX                           4                             6

Clustering(41) Variable = DEL PEAK 13(10Q23.31) MUTATION ANALYSIS
D41V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 13(10Q23.31) MUTATED   22 16
  DEL PEAK 13(10Q23.31) WILD-TYPE 62 47
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                             38                             109 
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                             16                              47 
$`DEL PEAK 13(10Q23.31) MUTATED`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10W TCGA-BC-A10Y TCGA-BC-A216 
       27.91        37.32        10.13         2.99        23.34        44.42 
TCGA-BC-A217 TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5260 TCGA-CC-5263 TCGA-CC-A1HT 
       13.84        22.36         9.50         2.86         4.24         3.32 
TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A118 
        0.07         0.10         0.13        37.78        83.57       113.00 
TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EG TCGA-DD-A1EL TCGA-DD-A39Y TCGA-DD-A3A0 
        2.60        21.76        45.11        13.64         5.62        25.81 
TCGA-DD-A4NA TCGA-DD-A4NI TCGA-DD-A4NQ TCGA-ED-A459 TCGA-ED-A66Y TCGA-ED-A7PX 
       33.14        18.44        12.26        13.41         0.23         0.20 
TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A496 TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25X 
       19.10         0.20         0.33        51.06        53.79        58.49 
TCGA-G3-A5SJ TCGA-NI-A4U2 
       11.97        58.88 

$`DEL PEAK 13(10Q23.31) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A10Z 
       48.99        46.78        27.52        27.52        25.32         1.12 
TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A3KF TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5258 
       69.57         5.03         0.26         3.95         0.53         0.07 
TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-A3M9 TCGA-DD-A113 TCGA-DD-A116 TCGA-DD-A119 
        0.39         3.39         0.10        79.73        53.33         7.33 
TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC 
        0.46        51.29        90.71        79.40        66.31        19.79 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ 
       75.65         6.71        12.95        49.15         6.02        29.16 
TCGA-DD-A1EK TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Z TCGA-DD-A3A1 TCGA-DD-A3A2 
       18.35        21.14        55.69        19.76         7.66        70.06 
TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 
       17.59        20.12       102.74       107.11        13.78         0.36 
TCGA-DD-A3A9 TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NJ 
       30.61        12.85        73.38        14.07        14.24        15.06 
TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NR 
       39.78        56.25        29.56        61.45        93.67         0.30 
TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D 
       80.75        66.35        10.98         9.30         7.56        10.98 
TCGA-DD-A73E TCGA-DD-A73F TCGA-DD-A73G TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 
        1.45        27.72       100.96        12.69        15.85        13.91 
TCGA-ED-A66X TCGA-ED-A7PY TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-ED-A82E TCGA-EP-A12J 
       13.35         0.20         0.20         0.20         0.20        18.74 
TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK 
       19.99        11.74        10.98         0.62         9.96        11.93 
TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 
       22.85        14.40        32.45         8.12         6.38         0.13 
TCGA-FV-A495 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25V TCGA-G3-A25W 
        0.03        60.36         0.39         1.22        28.27        30.74 
TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ 
       14.86        21.53        22.13        25.64         5.92        19.53 
TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SL TCGA-G3-A5SM TCGA-G3-A6UC TCGA-GJ-A6C0 
       19.23        14.70         7.99         4.37         7.76         1.02 
TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75G TCGA-MI-A75I 
        4.01         0.49         9.57         5.10        14.24         8.71 
TCGA-O8-A75V 
        4.44 

  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                           0.07                            0.03 
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                         113.00                          107.11 
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                          13.74                           14.24 
[1] "0.1 - 113.0 (13.7)" "0.0 - 107.1 (14.2)"
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A115                      TCGA-DD-A116 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-O8-A75V 
"DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A115                      TCGA-DD-A116 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-O8-A75V 
"DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A115                      TCGA-DD-A116 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-O8-A75V 
"DEL PEAK 13(10Q23.31) WILD-TYPE" 
[1] "hr=" "1"  
D41V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 13(10Q23.31) MUTATED         9       11         0         13
  DEL PEAK 13(10Q23.31) WILD-TYPE      49       25         2         17
                                 vv
clus                              STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 13(10Q23.31) MUTATED            0          2        0         1
  DEL PEAK 13(10Q23.31) WILD-TYPE          4          3        1         0
                                 vv
clus                              STAGE IVB
  DEL PEAK 13(10Q23.31) MUTATED           0
  DEL PEAK 13(10Q23.31) WILD-TYPE         2
D41V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 13(10Q23.31) MUTATED   10 13 14  3
  DEL PEAK 13(10Q23.31) WILD-TYPE 51 27 26  5
D41V4, multiclass
    clus
vv   DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  T1                            10                              51
  T2                            13                              27
  T3                            14                              26
  T4                             3                               5
D41V5, binary
                                 cls
clus                               0  1
  DEL PEAK 13(10Q23.31) MUTATED   22  2
  DEL PEAK 13(10Q23.31) WILD-TYPE 75  1
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 13(10Q23.31) MUTATED     22    2
  DEL PEAK 13(10Q23.31) WILD-TYPE   75    1
   clus
vv  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  0                            22                              75
  1                             2                               1
                                 vv
clus                              M0 M1 MX
  DEL PEAK 13(10Q23.31) MUTATED   33  0  7
  DEL PEAK 13(10Q23.31) WILD-TYPE 82  3 24
D41V6, multiclass
    clus
vv   DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  M0                            33                              82
  M1                             0                               3
  MX                             7                              24
D41V7, binary
                                 cls
clus                               0  1
  DEL PEAK 13(10Q23.31) MUTATED   14 26
  DEL PEAK 13(10Q23.31) WILD-TYPE 44 65
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 13(10Q23.31) MUTATED     14   26
  DEL PEAK 13(10Q23.31) WILD-TYPE   44   65
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  FEMALE                            14                              44
  MALE                              26                              65
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 13(10Q23.31) MUTATED   30  4  0  5
  DEL PEAK 13(10Q23.31) WILD-TYPE 92  7  1  5
D41V8, multiclass
    clus
vv   DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  R0                            30                              92
  R1                             4                               7
  R2                             0                               1
  RX                             5                               5

Clustering(42) Variable = DEL PEAK 14(10Q24.33) MUTATION ANALYSIS
D42V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 14(10Q24.33) MUTATED   19 18
  DEL PEAK 14(10Q24.33) WILD-TYPE 65 45
  DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE 
                             37                             110 
  DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE 
                             18                              45 
$`DEL PEAK 14(10Q24.33) MUTATED`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10W TCGA-BC-A112 TCGA-BC-A217 
       27.91        37.32        10.13         2.99         5.03        13.84 
TCGA-BC-A5W4 TCGA-CC-5260 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MC 
        9.50         2.86         3.32         0.10         0.07         0.13 
TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EG TCGA-DD-A1EL 
       37.78        83.57         2.60        21.76        45.11        13.64 
TCGA-DD-A39Y TCGA-DD-A3A0 TCGA-DD-A3A5 TCGA-DD-A4NA TCGA-DD-A4NI TCGA-DD-A4NQ 
        5.62        25.81       102.74        33.14        18.44        12.26 
TCGA-ED-A459 TCGA-ED-A66Y TCGA-ED-A7PX TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A496 
       13.41         0.23         0.20        19.10         0.20         0.33 
TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A5SJ TCGA-GJ-A6C0 
       51.06        53.79        58.49        14.86        11.97         1.02 
TCGA-NI-A4U2 
       58.88 

$`DEL PEAK 14(10Q24.33) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A10Y 
       48.99        46.78        27.52        27.52        25.32        23.34 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A69H 
        1.12        69.57        44.42         0.26        22.36         3.95 
TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A3MB 
        0.53         0.07         0.39         3.39         4.24         0.10 
TCGA-DD-A113 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11D 
       79.73        53.33       113.00         7.33         0.46        51.29 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       90.71        79.40        66.31        19.79        75.65         6.71 
TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EK TCGA-DD-A39V 
       12.95        49.15         6.02        29.16        18.35        21.14 
TCGA-DD-A39X TCGA-DD-A39Z TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 
       55.69        19.76         7.66        70.06        17.59        20.12 
TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NB TCGA-DD-A4ND 
      107.11        13.78         0.36        30.61        12.85        73.38 
TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN 
       14.07        14.24        15.06        39.78        56.25        29.56 
TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A 
       61.45        93.67         0.30        80.75        66.35        10.98 
TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F TCGA-DD-A73G 
        9.30         7.56        10.98         1.45        27.72       100.96 
TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A7PY TCGA-ED-A7PZ 
       12.69        15.85        13.91        13.35         0.20         0.20 
TCGA-ED-A7XP TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB 
        0.20         0.20        18.74        19.99        11.74        10.98 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B 
        0.62         9.96        11.93        22.85        14.40        32.45 
TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A4ZP TCGA-FV-A4ZQ 
        8.12         6.38         0.13         0.03        60.36         0.39 
TCGA-G3-A25S TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH 
        1.22        28.27        30.74        21.53        22.13        25.64 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SL TCGA-G3-A5SM 
        5.92        19.53        19.23        14.70         7.99         4.37 
TCGA-G3-A6UC TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75G 
        7.76         4.01         0.49         9.57         5.10        14.24 
TCGA-MI-A75I TCGA-O8-A75V 
        8.71         4.44 

  DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE 
                           0.07                            0.03 
  DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE 
                         102.74                          113.00 
  DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE 
                          13.41                           14.32 
[1] "0.1 - 102.7 (13.4)" "0.0 - 113.0 (14.3)"
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 14(10Q24.33) MUTATED"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "DEL PEAK 14(10Q24.33) MUTATED"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A115                      TCGA-DD-A116 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-O8-A75V 
"DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 14(10Q24.33) MUTATED"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "DEL PEAK 14(10Q24.33) MUTATED"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A115                      TCGA-DD-A116 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-O8-A75V 
"DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 14(10Q24.33) MUTATED"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "DEL PEAK 14(10Q24.33) MUTATED"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A115                      TCGA-DD-A116 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-O8-A75V 
"DEL PEAK 14(10Q24.33) WILD-TYPE" 
[1] "hr=" "1.4"
D42V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 14(10Q24.33) MUTATED        10       10         1         11
  DEL PEAK 14(10Q24.33) WILD-TYPE      48       26         1         19
                                 vv
clus                              STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 14(10Q24.33) MUTATED            0          2        0         1
  DEL PEAK 14(10Q24.33) WILD-TYPE          4          3        1         0
                                 vv
clus                              STAGE IVB
  DEL PEAK 14(10Q24.33) MUTATED           0
  DEL PEAK 14(10Q24.33) WILD-TYPE         2
D42V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 14(10Q24.33) MUTATED   11 12 14  2
  DEL PEAK 14(10Q24.33) WILD-TYPE 50 28 26  6
D42V4, multiclass
    clus
vv   DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE
  T1                            11                              50
  T2                            12                              28
  T3                            14                              26
  T4                             2                               6
D42V5, binary
                                 cls
clus                               0  1
  DEL PEAK 14(10Q24.33) MUTATED   21  2
  DEL PEAK 14(10Q24.33) WILD-TYPE 76  1
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(10Q24.33) MUTATED     21    2
  DEL PEAK 14(10Q24.33) WILD-TYPE   76    1
   clus
vv  DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE
  0                            21                              76
  1                             2                               1
                                 vv
clus                              M0 M1 MX
  DEL PEAK 14(10Q24.33) MUTATED   31  0  8
  DEL PEAK 14(10Q24.33) WILD-TYPE 84  3 23
D42V6, multiclass
    clus
vv   DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE
  M0                            31                              84
  M1                             0                               3
  MX                             8                              23
D42V7, binary
                                 cls
clus                               0  1
  DEL PEAK 14(10Q24.33) MUTATED   14 25
  DEL PEAK 14(10Q24.33) WILD-TYPE 44 66
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(10Q24.33) MUTATED     14   25
  DEL PEAK 14(10Q24.33) WILD-TYPE   44   66
        clus
vv       DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE
  FEMALE                            14                              44
  MALE                              25                              66
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 14(10Q24.33) MUTATED   29  4  0  5
  DEL PEAK 14(10Q24.33) WILD-TYPE 93  7  1  5
D42V8, multiclass
    clus
vv   DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE
  R0                            29                              93
  R1                             4                               7
  R2                             0                               1
  RX                             5                               5

Clustering(43) Variable = DEL PEAK 15(11Q14.1) MUTATION ANALYSIS
D43V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 15(11Q14.1) MUTATED   13 11
  DEL PEAK 15(11Q14.1) WILD-TYPE 71 52
  DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE 
                            24                            123 
  DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE 
                            11                             52 
$`DEL PEAK 15(11Q14.1) MUTATED`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A112 TCGA-BC-A217 TCGA-BC-A3KF 
       27.91        37.32        46.78         5.03        13.84         0.26 
TCGA-CC-5263 TCGA-CC-A3M9 TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A11A TCGA-DD-A1E9 
        4.24         0.10         0.13        79.73         2.60        90.71 
TCGA-DD-A1EF TCGA-DD-A1EJ TCGA-DD-A39X TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NI 
       12.95        29.16        55.69        12.85        73.38        18.44 
TCGA-DD-A73B TCGA-ED-A7PZ TCGA-EP-A2KC TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A5SJ 
        9.30         0.20         0.62        60.36         1.22        11.97 

$`DEL PEAK 15(11Q14.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X 
       48.99        10.13        27.52        27.52         2.99        25.32 
TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A3KG TCGA-BC-A5W4 
       23.34         1.12        69.57        44.42        22.36         9.50 
TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 
        3.95         0.53         0.07         2.86         0.39         3.39 
TCGA-CC-A1HT TCGA-CC-A3MA TCGA-CC-A3MB TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 
        3.32         0.07         0.10        37.78        83.57        53.33 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1EA 
      113.00         7.33         0.46        21.76        51.29        79.40 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EG TCGA-DD-A1EH 
       66.31        19.79        75.65         6.71        45.11        49.15 
TCGA-DD-A1EI TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A39Z 
        6.02        18.35        13.64        21.14         5.62        19.76 
TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 
       25.81         7.66        70.06        17.59        20.12       102.74 
TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NF 
      107.11        13.78         0.36        30.61        33.14        14.07 
TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO 
       14.24        15.06        39.78        56.25        29.56        61.45 
TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A 
       93.67        12.26         0.30        80.75        66.35        10.98 
TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F TCGA-DD-A73G TCGA-ED-A459 
        7.56        10.98         1.45        27.72       100.96        13.41 
TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PX 
       12.69        15.85        13.91        13.35         0.23         0.20 
TCGA-ED-A7PY TCGA-ED-A7XP TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA 
        0.20         0.20         0.20        18.74        19.99        11.74 
TCGA-EP-A2KB TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B 
       10.98         9.96        11.93        22.85        14.40        32.45 
TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 
       19.10         0.20         8.12         6.38         0.13         0.03 
TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W 
        0.33         0.39        51.06        53.79        28.27        30.74 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
       58.49        14.86        21.53        22.13        25.64         5.92 
TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SL TCGA-G3-A5SM TCGA-G3-A6UC 
       19.53        19.23        14.70         7.99         4.37         7.76 
TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75G 
        1.02         4.01         0.49         9.57         5.10        14.24 
TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
        8.71        58.88         4.44 

  DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE 
                         90.71                         113.00 
  DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE 
                         12.90                          14.24 
[1] "0.1 - 90.7 (12.9)"  "0.0 - 113.0 (14.2)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 15(11Q14.1) WILD-TYPE"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 15(11Q14.1) MUTATED"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 15(11Q14.1) WILD-TYPE"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
  "DEL PEAK 15(11Q14.1) MUTATED"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 15(11Q14.1) WILD-TYPE"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 15(11Q14.1) WILD-TYPE"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 15(11Q14.1) MUTATED"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 15(11Q14.1) WILD-TYPE"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
  "DEL PEAK 15(11Q14.1) MUTATED"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 15(11Q14.1) WILD-TYPE"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 15(11Q14.1) WILD-TYPE"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 15(11Q14.1) MUTATED"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 15(11Q14.1) WILD-TYPE"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
  "DEL PEAK 15(11Q14.1) MUTATED"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 15(11Q14.1) WILD-TYPE"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 15(11Q14.1) WILD-TYPE" 
[1] "hr=" "1.1"
D43V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 15(11Q14.1) MUTATED        11        4         0          6
  DEL PEAK 15(11Q14.1) WILD-TYPE      47       32         2         24
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 15(11Q14.1) MUTATED            0          1        0         1
  DEL PEAK 15(11Q14.1) WILD-TYPE          4          4        1         0
                                vv
clus                             STAGE IVB
  DEL PEAK 15(11Q14.1) MUTATED           0
  DEL PEAK 15(11Q14.1) WILD-TYPE         2
D43V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 15(11Q14.1) MUTATED   13  5  8  0
  DEL PEAK 15(11Q14.1) WILD-TYPE 48 35 32  8
D43V4, multiclass
    clus
vv   DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  T1                           13                             48
  T2                            5                             35
  T3                            8                             32
  T4                            0                              8
D43V5, binary
                                cls
clus                              0  1
  DEL PEAK 15(11Q14.1) MUTATED   13  2
  DEL PEAK 15(11Q14.1) WILD-TYPE 84  1
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(11Q14.1) MUTATED     13    2
  DEL PEAK 15(11Q14.1) WILD-TYPE   84    1
   clus
vv  DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  0                           13                             84
  1                            2                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK 15(11Q14.1) MUTATED   20  0  6
  DEL PEAK 15(11Q14.1) WILD-TYPE 95  3 25
D43V6, multiclass
    clus
vv   DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  M0                           20                             95
  M1                            0                              3
  MX                            6                             25
D43V7, binary
                                cls
clus                              0  1
  DEL PEAK 15(11Q14.1) MUTATED    9 17
  DEL PEAK 15(11Q14.1) WILD-TYPE 49 74
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(11Q14.1) MUTATED      9   17
  DEL PEAK 15(11Q14.1) WILD-TYPE   49   74
        clus
vv       DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  FEMALE                            9                             49
  MALE                             17                             74
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 15(11Q14.1) MUTATED    20   4   0   2
  DEL PEAK 15(11Q14.1) WILD-TYPE 102   7   1   8
D43V8, multiclass
    clus
vv   DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  R0                           20                            102
  R1                            4                              7
  R2                            0                              1
  RX                            2                              8

Clustering(44) Variable = DEL PEAK 16(11Q23.3) MUTATION ANALYSIS
D44V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 16(11Q23.3) MUTATED   15 13
  DEL PEAK 16(11Q23.3) WILD-TYPE 69 50
  DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE 
                            28                            119 
  DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE 
                            13                             50 
$`DEL PEAK 16(11Q23.3) MUTATED`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A112 TCGA-BC-A3KF TCGA-BC-A69H 
       27.91        37.32        46.78         5.03         0.26         3.95 
TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A11A TCGA-DD-A1E9 
        4.24         0.07         0.13        79.73         2.60        90.71 
TCGA-DD-A1EF TCGA-DD-A1EJ TCGA-DD-A39X TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NI 
       12.95        29.16        55.69        12.85        73.38        18.44 
TCGA-DD-A4NN TCGA-DD-A73B TCGA-ED-A7PZ TCGA-EP-A2KC TCGA-FV-A4ZP TCGA-G3-A25S 
       29.56         9.30         0.20         0.62        60.36         1.22 
TCGA-G3-A25U TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-GJ-A6C0 
       53.79        14.70        11.97         1.02 

$`DEL PEAK 16(11Q23.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X 
       48.99        10.13        27.52        27.52         2.99        25.32 
TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG 
       23.34         1.12        69.57        44.42        13.84        22.36 
TCGA-BC-A5W4 TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 
        9.50         0.53         0.07         2.86         0.39         3.39 
TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 
        3.32         0.10         0.10        37.78        83.57        53.33 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1EA 
      113.00         7.33         0.46        21.76        51.29        79.40 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EG TCGA-DD-A1EH 
       66.31        19.79        75.65         6.71        45.11        49.15 
TCGA-DD-A1EI TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A39Z 
        6.02        18.35        13.64        21.14         5.62        19.76 
TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 
       25.81         7.66        70.06        17.59        20.12       102.74 
TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NF 
      107.11        13.78         0.36        30.61        33.14        14.07 
TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NO TCGA-DD-A4NP 
       14.24        15.06        39.78        56.25        61.45        93.67 
TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73C 
       12.26         0.30        80.75        66.35        10.98         7.56 
TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F TCGA-DD-A73G TCGA-ED-A459 TCGA-ED-A4XI 
       10.98         1.45        27.72       100.96        13.41        12.69 
TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7PY 
       15.85        13.91        13.35         0.23         0.20         0.20 
TCGA-ED-A7XP TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB 
        0.20         0.20        18.74        19.99        11.74        10.98 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR 
        9.96        11.93        22.85        14.40        32.45        19.10 
TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 
        0.20         8.12         6.38         0.13         0.03         0.33 
TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y 
        0.39        51.06        28.27        30.74        58.49        14.86 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
       21.53        22.13        25.64         5.92        19.53        19.23 
TCGA-G3-A5SL TCGA-G3-A5SM TCGA-G3-A6UC TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C 
        7.99         4.37         7.76         4.01         0.49         9.57 
TCGA-MI-A75E TCGA-MI-A75G TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
        5.10        14.24         8.71        58.88         4.44 

  DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE 
                         90.71                         113.00 
  DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE 
                         12.90                          14.24 
[1] "0.1 - 90.7 (12.9)"  "0.0 - 113.0 (14.2)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 16(11Q23.3) WILD-TYPE"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 16(11Q23.3) WILD-TYPE"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 16(11Q23.3) WILD-TYPE"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 16(11Q23.3) WILD-TYPE"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
  "DEL PEAK 16(11Q23.3) MUTATED"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 16(11Q23.3) WILD-TYPE"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 16(11Q23.3) WILD-TYPE"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 16(11Q23.3) WILD-TYPE"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 16(11Q23.3) WILD-TYPE"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 16(11Q23.3) WILD-TYPE"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 16(11Q23.3) WILD-TYPE"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
  "DEL PEAK 16(11Q23.3) MUTATED"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 16(11Q23.3) WILD-TYPE"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 16(11Q23.3) WILD-TYPE"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 16(11Q23.3) WILD-TYPE"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 16(11Q23.3) WILD-TYPE"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 16(11Q23.3) WILD-TYPE"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 16(11Q23.3) WILD-TYPE"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
  "DEL PEAK 16(11Q23.3) MUTATED"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 16(11Q23.3) WILD-TYPE"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 16(11Q23.3) WILD-TYPE"   "DEL PEAK 16(11Q23.3) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "DEL PEAK 16(11Q23.3) MUTATED" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"DEL PEAK 16(11Q23.3) WILD-TYPE" "DEL PEAK 16(11Q23.3) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 16(11Q23.3) WILD-TYPE" 
[1] "hr=" "1.1"
D44V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 16(11Q23.3) MUTATED        13        6         0          6
  DEL PEAK 16(11Q23.3) WILD-TYPE      45       30         2         24
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 16(11Q23.3) MUTATED            0          1        0         1
  DEL PEAK 16(11Q23.3) WILD-TYPE          4          4        1         0
                                vv
clus                             STAGE IVB
  DEL PEAK 16(11Q23.3) MUTATED           0
  DEL PEAK 16(11Q23.3) WILD-TYPE         2
D44V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 16(11Q23.3) MUTATED   15  7  8  0
  DEL PEAK 16(11Q23.3) WILD-TYPE 46 33 32  8
D44V4, multiclass
    clus
vv   DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE
  T1                           15                             46
  T2                            7                             33
  T3                            8                             32
  T4                            0                              8
D44V5, binary
                                cls
clus                              0  1
  DEL PEAK 16(11Q23.3) MUTATED   16  2
  DEL PEAK 16(11Q23.3) WILD-TYPE 81  1
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(11Q23.3) MUTATED     16    2
  DEL PEAK 16(11Q23.3) WILD-TYPE   81    1
   clus
vv  DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE
  0                           16                             81
  1                            2                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK 16(11Q23.3) MUTATED   23  0  7
  DEL PEAK 16(11Q23.3) WILD-TYPE 92  3 24
D44V6, multiclass
    clus
vv   DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE
  M0                           23                             92
  M1                            0                              3
  MX                            7                             24
D44V7, binary
                                cls
clus                              0  1
  DEL PEAK 16(11Q23.3) MUTATED   11 19
  DEL PEAK 16(11Q23.3) WILD-TYPE 47 72
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(11Q23.3) MUTATED     11   19
  DEL PEAK 16(11Q23.3) WILD-TYPE   47   72
        clus
vv       DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE
  FEMALE                           11                             47
  MALE                             19                             72
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 16(11Q23.3) MUTATED   23  4  0  3
  DEL PEAK 16(11Q23.3) WILD-TYPE 99  7  1  7
D44V8, multiclass
    clus
vv   DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE
  R0                           23                             99
  R1                            4                              7
  R2                            0                              1
  RX                            3                              7

Clustering(45) Variable = DEL PEAK 17(12P12.1) MUTATION ANALYSIS
D45V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 17(12P12.1) MUTATED   18 15
  DEL PEAK 17(12P12.1) WILD-TYPE 66 48
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                            33                            114 
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                            15                             48 
$`DEL PEAK 17(12P12.1) MUTATED`
TCGA-BC-4073 TCGA-BC-A10Y TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-CC-A1HT 
       27.91        23.34        13.84         0.26         9.50         3.32 
TCGA-CC-A3MA TCGA-CC-A3MC TCGA-DD-A119 TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EJ 
        0.07         0.13         7.33        45.11        49.15        29.16 
TCGA-DD-A1EL TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A1 TCGA-DD-A3A7 TCGA-DD-A4NA 
       13.64        55.69         5.62         7.66        13.78        33.14 
TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NO TCGA-DD-A73F TCGA-ED-A7XP 
       14.24        18.44        15.06        61.45        27.72         0.20 
TCGA-EP-A2KC TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A496 TCGA-G3-A25S TCGA-G3-A25Z 
        0.62         8.12         6.38         0.33         1.22        21.53 
TCGA-GJ-A6C0 TCGA-MI-A75G TCGA-MI-A75I 
        1.02        14.24         8.71 

$`DEL PEAK 17(12P12.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U 
       48.99        37.32        10.13        46.78        27.52        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
        2.99        25.32         1.12        69.57         5.03        44.42 
TCGA-BC-A3KG TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 
       22.36         3.95         0.53         0.07         2.86         0.39 
TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A114 
        3.39         4.24         0.10         0.10        79.73        37.78 
TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C 
       83.57        53.33       113.00         2.60         0.46        21.76 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED 
       51.29        90.71        79.40        66.31        19.79        75.65 
TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EI TCGA-DD-A1EK TCGA-DD-A39V TCGA-DD-A39Z 
        6.71        12.95         6.02        18.35        21.14        19.76 
TCGA-DD-A3A0 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 
       25.81        70.06        17.59        20.12       102.74       107.11 
TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NK 
        0.36        30.61        12.85        73.38        14.07        39.78 
TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NS 
       56.25        29.56        93.67        12.26         0.30        80.75 
TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E 
       66.35        10.98         9.30         7.56        10.98         1.45 
TCGA-DD-A73G TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X 
      100.96        13.41        12.69        15.85        13.91        13.35 
TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7PY TCGA-ED-A7PZ TCGA-ED-A82E TCGA-EP-A12J 
        0.23         0.20         0.20         0.20         0.20        18.74 
TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS 
       19.99        11.74        10.98         9.96        11.93        22.85 
TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R3 TCGA-FV-A495 
       14.40        32.45        19.10         0.20         0.13         0.03 
TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W 
       60.36         0.39        51.06        53.79        28.27        30.74 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ 
       58.49        14.86        22.13        25.64         5.92        19.53 
TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM TCGA-G3-A6UC 
       19.23        14.70        11.97         7.99         4.37         7.76 
TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-NI-A4U2 TCGA-O8-A75V 
        4.01         0.49         9.57         5.10        58.88         4.44 

  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                         61.45                         113.00 
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                         13.64                          14.78 
[1] "0.1 - 61.5 (13.6)"  "0.0 - 113.0 (14.8)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 17(12P12.1) MUTATED"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 17(12P12.1) MUTATED"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK 17(12P12.1) MUTATED"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 17(12P12.1) MUTATED"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 17(12P12.1) MUTATED"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK 17(12P12.1) MUTATED"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 17(12P12.1) MUTATED"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 17(12P12.1) MUTATED"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK 17(12P12.1) MUTATED"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 17(12P12.1) WILD-TYPE" 
[1] "hr=" "1.7"
D45V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 17(12P12.1) MUTATED        11        8         1          6
  DEL PEAK 17(12P12.1) WILD-TYPE      47       28         1         24
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 17(12P12.1) MUTATED            2          2        1         0
  DEL PEAK 17(12P12.1) WILD-TYPE          2          3        0         1
                                vv
clus                             STAGE IVB
  DEL PEAK 17(12P12.1) MUTATED           0
  DEL PEAK 17(12P12.1) WILD-TYPE         2
D45V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 17(12P12.1) MUTATED   12 10 10  1
  DEL PEAK 17(12P12.1) WILD-TYPE 49 30 30  7
D45V4, multiclass
    clus
vv   DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE
  T1                           12                             49
  T2                           10                             30
  T3                           10                             30
  T4                            1                              7
D45V5, binary
                                cls
clus                              0  1
  DEL PEAK 17(12P12.1) MUTATED   19  2
  DEL PEAK 17(12P12.1) WILD-TYPE 78  1
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(12P12.1) MUTATED     19    2
  DEL PEAK 17(12P12.1) WILD-TYPE   78    1
   clus
vv  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE
  0                           19                             78
  1                            2                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK 17(12P12.1) MUTATED   25  1  7
  DEL PEAK 17(12P12.1) WILD-TYPE 90  2 24
D45V6, multiclass
    clus
vv   DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE
  M0                           25                             90
  M1                            1                              2
  MX                            7                             24
D45V7, binary
                                cls
clus                              0  1
  DEL PEAK 17(12P12.1) MUTATED   12 21
  DEL PEAK 17(12P12.1) WILD-TYPE 46 70
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(12P12.1) MUTATED     12   21
  DEL PEAK 17(12P12.1) WILD-TYPE   46   70
        clus
vv       DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE
  FEMALE                           12                             46
  MALE                             21                             70
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 17(12P12.1) MUTATED   27  3  1  1
  DEL PEAK 17(12P12.1) WILD-TYPE 95  8  0  9
D45V8, multiclass
    clus
vv   DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE
  R0                           27                             95
  R1                            3                              8
  R2                            1                              0
  RX                            1                              9

Clustering(46) Variable = DEL PEAK 18(12Q24.33) MUTATION ANALYSIS
D46V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 18(12Q24.33) MUTATED   11 13
  DEL PEAK 18(12Q24.33) WILD-TYPE 73 50
  DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE 
                             24                             123 
  DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE 
                             13                              50 
$`DEL PEAK 18(12Q24.33) MUTATED`
TCGA-BC-A10Y TCGA-BC-A217 TCGA-BC-A5W4 TCGA-CC-5260 TCGA-CC-A1HT TCGA-CC-A3MA 
       23.34        13.84         9.50         2.86         3.32         0.07 
TCGA-CC-A3MC TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EL TCGA-DD-A39X TCGA-DD-A39Z 
        0.13        45.11        49.15        13.64        55.69        19.76 
TCGA-DD-A3A0 TCGA-DD-A3A5 TCGA-DD-A3A9 TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NO 
       25.81       102.74        30.61        18.44        15.06        61.45 
TCGA-ED-A459 TCGA-ED-A82E TCGA-EP-A2KC TCGA-FV-A3I1 TCGA-G3-A25Y TCGA-MI-A75G 
       13.41         0.20         0.62         8.12        14.86        14.24 

$`DEL PEAK 18(12Q24.33) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
       48.99        27.91        37.32        10.13        46.78        27.52 
TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 
       27.52         2.99        25.32         1.12        69.57         5.03 
TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A69H TCGA-BC-A69I TCGA-CC-5258 
       44.42         0.26        22.36         3.95         0.53         0.07 
TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-DD-A113 
        0.39         3.39         4.24         0.10         0.10        79.73 
TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A 
       37.78        83.57        53.33       113.00         7.33         2.60 
TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB 
        0.46        21.76        51.29        90.71        79.40        66.31 
TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EI TCGA-DD-A1EJ 
       19.79        75.65         6.71        12.95         6.02        29.16 
TCGA-DD-A1EK TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 
       18.35        21.14         5.62         7.66        70.06        17.59 
TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4NB 
       20.12       107.11        13.78         0.36        33.14        12.85 
TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN 
       73.38        14.07        14.24        39.78        56.25        29.56 
TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A 
       93.67        12.26         0.30        80.75        66.35        10.98 
TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F TCGA-DD-A73G 
        9.30         7.56        10.98         1.45        27.72       100.96 
TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PX 
       12.69        15.85        13.91        13.35         0.23         0.20 
TCGA-ED-A7PY TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA 
        0.20         0.20         0.20        18.74        19.99        11.74 
TCGA-EP-A2KB TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B 
       10.98         9.96        11.93        22.85        14.40        32.45 
TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 
       19.10         0.20         6.38         0.13         0.03         0.33 
TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V 
       60.36         0.39         1.22        51.06        53.79        28.27 
TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
       30.74        58.49        21.53        22.13        25.64         5.92 
TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM 
       19.53        19.23        14.70        11.97         7.99         4.37 
TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E 
        7.76         1.02         4.01         0.49         9.57         5.10 
TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
        8.71        58.88         4.44 

  DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE 
                           0.07                            0.03 
  DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE 
                         102.74                          113.00 
  DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE 
                          14.55                           13.91 
[1] "0.1 - 102.7 (14.6)" "0.0 - 113.0 (13.9)"
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
  "DEL PEAK 18(12Q24.33) MUTATED"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
  "DEL PEAK 18(12Q24.33) MUTATED"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-O8-A75V 
"DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
  "DEL PEAK 18(12Q24.33) MUTATED"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
  "DEL PEAK 18(12Q24.33) MUTATED"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-O8-A75V 
"DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
  "DEL PEAK 18(12Q24.33) MUTATED"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
  "DEL PEAK 18(12Q24.33) MUTATED"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
  "DEL PEAK 18(12Q24.33) MUTATED" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"DEL PEAK 18(12Q24.33) WILD-TYPE"   "DEL PEAK 18(12Q24.33) MUTATED" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"DEL PEAK 18(12Q24.33) WILD-TYPE" "DEL PEAK 18(12Q24.33) WILD-TYPE" 
                     TCGA-O8-A75V 
"DEL PEAK 18(12Q24.33) WILD-TYPE" 
[1] "hr=" "1.4"
D46V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 18(12Q24.33) MUTATED         6        8         2          5
  DEL PEAK 18(12Q24.33) WILD-TYPE      52       28         0         25
                                 vv
clus                              STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 18(12Q24.33) MUTATED            0          1        0         0
  DEL PEAK 18(12Q24.33) WILD-TYPE          4          4        1         1
                                 vv
clus                              STAGE IVB
  DEL PEAK 18(12Q24.33) MUTATED           1
  DEL PEAK 18(12Q24.33) WILD-TYPE         1
D46V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 18(12Q24.33) MUTATED    6  8  7  3
  DEL PEAK 18(12Q24.33) WILD-TYPE 55 32 33  5
D46V4, multiclass
    clus
vv   DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE
  T1                             6                              55
  T2                             8                              32
  T3                             7                              33
  T4                             3                               5
D46V5, binary
                                 cls
clus                               0  1
  DEL PEAK 18(12Q24.33) MUTATED   16  0
  DEL PEAK 18(12Q24.33) WILD-TYPE 81  3
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 18(12Q24.33) MUTATED     16    0
  DEL PEAK 18(12Q24.33) WILD-TYPE   81    3
   clus
vv  DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE
  0                            16                              81
  1                             0                               3
                                 vv
clus                              M0 M1 MX
  DEL PEAK 18(12Q24.33) MUTATED   20  1  3
  DEL PEAK 18(12Q24.33) WILD-TYPE 95  2 28
D46V6, multiclass
    clus
vv   DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE
  M0                            20                              95
  M1                             1                               2
  MX                             3                              28
D46V7, binary
                                 cls
clus                               0  1
  DEL PEAK 18(12Q24.33) MUTATED   10 14
  DEL PEAK 18(12Q24.33) WILD-TYPE 48 77
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 18(12Q24.33) MUTATED     10   14
  DEL PEAK 18(12Q24.33) WILD-TYPE   48   77
        clus
vv       DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE
  FEMALE                            10                              48
  MALE                              14                              77
                                 vv
clus                               R0  R1  R2  RX
  DEL PEAK 18(12Q24.33) MUTATED    21   1   0   1
  DEL PEAK 18(12Q24.33) WILD-TYPE 101  10   1   9
D46V8, multiclass
    clus
vv   DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE
  R0                            21                             101
  R1                             1                              10
  R2                             0                               1
  RX                             1                               9

Clustering(47) Variable = DEL PEAK 19(13Q12.11) MUTATION ANALYSIS
D47V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 19(13Q12.11) MUTATED   30 16
  DEL PEAK 19(13Q12.11) WILD-TYPE 54 47
  DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE 
                             46                             101 
  DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE 
                             16                              47 
$`DEL PEAK 19(13Q12.11) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A112 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 
       37.32        10.13         5.03         0.26        22.36         9.50 
TCGA-BC-A69H TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-A1HT 
        3.95         0.07         2.86         0.39         3.39         3.32 
TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A116 TCGA-DD-A118 
        0.10         0.07         0.13        79.73        53.33       113.00 
TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EF TCGA-DD-A1EI TCGA-DD-A1EK TCGA-DD-A39X 
        2.60        21.76        12.95         6.02        18.35        55.69 
TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NO TCGA-DD-A4NQ 
       30.61        33.14        14.24        15.06        61.45        12.26 
TCGA-DD-A73B TCGA-DD-A73G TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A7PX TCGA-ED-A7PZ 
        9.30       100.96        13.41        12.69         0.20         0.20 
TCGA-ED-A7XP TCGA-EP-A3RK TCGA-FV-A3R2 TCGA-FV-A495 TCGA-G3-A25S TCGA-G3-A25T 
        0.20        11.93         6.38         0.03         1.22        51.06 
TCGA-G3-A25X TCGA-G3-A3CH TCGA-G3-A5SM TCGA-MI-A75G 
       58.49        25.64         4.37        14.24 

$`DEL PEAK 19(13Q12.11) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W 
       48.99        27.91        46.78        27.52        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A217 
       25.32        23.34         1.12        69.57        44.42        13.84 
TCGA-BC-A69I TCGA-CC-5263 TCGA-CC-A3MB TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A119 
        0.53         4.24         0.10        37.78        83.57         7.33 
TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC 
        0.46        51.29        90.71        79.40        66.31        19.79 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A1EL 
       75.65         6.71        45.11        49.15        29.16        13.64 
TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 
       21.14         5.62        19.76        25.81         7.66        70.06 
TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 
       17.59        20.12       102.74       107.11        13.78         0.36 
TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NL 
       12.85        73.38        14.07        18.44        39.78        56.25 
TCGA-DD-A4NN TCGA-DD-A4NP TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A 
       29.56        93.67         0.30        80.75        66.35        10.98 
TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F TCGA-ED-A5KG TCGA-ED-A627 
        7.56        10.98         1.45        27.72        15.85        13.91 
TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PY TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A26S 
       13.35         0.23         0.20         0.20        18.74        19.99 
TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-ES-A2HS TCGA-ES-A2HT 
       11.74        10.98         0.62         9.96        22.85        14.40 
TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R3 TCGA-FV-A496 
       32.45        19.10         0.20         8.12         0.13         0.33 
TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y 
       60.36         0.39        53.79        28.27        30.74        14.86 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI 
       21.53        22.13         5.92        19.53        19.23        14.70 
TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-LG-A6GG 
       11.97         7.99         7.76         1.02         4.01         0.49 
TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
        9.57         5.10         8.71        58.88         4.44 

  DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE 
                           0.03                            0.10 
  DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE 
                         113.00                          107.11 
  DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE 
                          11.03                           17.59 
[1] "0.0 - 113.0 (11.0)" "0.1 - 107.1 (17.6)"
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-O8-A75V 
"DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-O8-A75V 
"DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
  "DEL PEAK 19(13Q12.11) MUTATED"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
  "DEL PEAK 19(13Q12.11) MUTATED" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"DEL PEAK 19(13Q12.11) WILD-TYPE"   "DEL PEAK 19(13Q12.11) MUTATED" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"DEL PEAK 19(13Q12.11) WILD-TYPE" "DEL PEAK 19(13Q12.11) WILD-TYPE" 
                     TCGA-O8-A75V 
"DEL PEAK 19(13Q12.11) WILD-TYPE" 
[1] "hr=" "1.1"
D47V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 19(13Q12.11) MUTATED        11       17         0         10
  DEL PEAK 19(13Q12.11) WILD-TYPE      47       19         2         20
                                 vv
clus                              STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 19(13Q12.11) MUTATED            1          3        0         0
  DEL PEAK 19(13Q12.11) WILD-TYPE          3          2        1         1
                                 vv
clus                              STAGE IVB
  DEL PEAK 19(13Q12.11) MUTATED           2
  DEL PEAK 19(13Q12.11) WILD-TYPE         0
D47V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 19(13Q12.11) MUTATED   11 19 13  4
  DEL PEAK 19(13Q12.11) WILD-TYPE 50 21 27  4
D47V4, multiclass
    clus
vv   DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE
  T1                            11                              50
  T2                            19                              21
  T3                            13                              27
  T4                             4                               4
D47V5, binary
                                 cls
clus                               0  1
  DEL PEAK 19(13Q12.11) MUTATED   33  1
  DEL PEAK 19(13Q12.11) WILD-TYPE 64  2
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 19(13Q12.11) MUTATED     33    1
  DEL PEAK 19(13Q12.11) WILD-TYPE   64    2
   clus
vv  DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE
  0                            33                              64
  1                             1                               2
                                 vv
clus                              M0 M1 MX
  DEL PEAK 19(13Q12.11) MUTATED   40  2  5
  DEL PEAK 19(13Q12.11) WILD-TYPE 75  1 26
D47V6, multiclass
    clus
vv   DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE
  M0                            40                              75
  M1                             2                               1
  MX                             5                              26
D47V7, binary
                                 cls
clus                               0  1
  DEL PEAK 19(13Q12.11) MUTATED   20 27
  DEL PEAK 19(13Q12.11) WILD-TYPE 38 64
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 19(13Q12.11) MUTATED     20   27
  DEL PEAK 19(13Q12.11) WILD-TYPE   38   64
        clus
vv       DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE
  FEMALE                            20                              38
  MALE                              27                              64
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 19(13Q12.11) MUTATED   36  3  0  5
  DEL PEAK 19(13Q12.11) WILD-TYPE 86  8  1  5
D47V8, multiclass
    clus
vv   DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE
  R0                            36                              86
  R1                             3                               8
  R2                             0                               1
  RX                             5                               5

Clustering(48) Variable = DEL PEAK 20(13Q14.2) MUTATION ANALYSIS
D48V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 20(13Q14.2) MUTATED   37 30
  DEL PEAK 20(13Q14.2) WILD-TYPE 47 33
  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE 
                            67                             80 
  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE 
                            30                             33 
$`DEL PEAK 20(13Q14.2) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10Y TCGA-BC-A10Z 
       37.32        10.13        27.52         2.99        23.34         1.12 
TCGA-BC-A112 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-BC-A69H 
        5.03        13.84         0.26        22.36         9.50         3.95 
TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT 
        0.07         2.86         0.39         3.39         4.24         3.32 
TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 
        0.10         0.07         0.13        79.73        37.78        83.57 
TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EF TCGA-DD-A1EI 
       53.33       113.00         2.60        21.76        12.95         6.02 
TCGA-DD-A1EK TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A0 TCGA-DD-A3A5 TCGA-DD-A3A9 
       18.35        55.69         5.62        25.81       102.74        30.61 
TCGA-DD-A4NA TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NQ 
       33.14        14.24        15.06        29.56        61.45        12.26 
TCGA-DD-A4NR TCGA-DD-A73E TCGA-DD-A73F TCGA-DD-A73G TCGA-ED-A459 TCGA-ED-A4XI 
        0.30         1.45        27.72       100.96        13.41        12.69 
TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-EP-A3RK TCGA-FV-A3I0 
        0.23         0.20         0.20         0.20        11.93         0.20 
TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A495 TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25X 
        8.12         6.38         0.03         1.22        51.06        58.49 
TCGA-G3-A25Y TCGA-G3-A3CH TCGA-G3-A5SI TCGA-G3-A5SM TCGA-GJ-A6C0 TCGA-MI-A75G 
       14.86        25.64        14.70         4.37         1.02        14.24 
TCGA-MI-A75I 
        8.71 

$`DEL PEAK 20(13Q14.2) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A110 
       48.99        27.91        46.78        27.52        25.32        69.57 
TCGA-BC-A216 TCGA-BC-A69I TCGA-CC-A3MB TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11D 
       44.42         0.53         0.10         7.33         0.46        51.29 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       90.71        79.40        66.31        19.79        75.65         6.71 
TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39Z 
       45.11        49.15        29.16        13.64        21.14        19.76 
TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A3A7 
        7.66        70.06        17.59        20.12       107.11        13.78 
TCGA-DD-A3A8 TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NI TCGA-DD-A4NK 
        0.36        12.85        73.38        14.07        18.44        39.78 
TCGA-DD-A4NL TCGA-DD-A4NP TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73B 
       56.25        93.67        80.75        66.35        10.98         9.30 
TCGA-DD-A73C TCGA-DD-A73D TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A7PY 
        7.56        10.98        15.85        13.91        13.35         0.20 
TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC 
        0.20        18.74        19.99        11.74        10.98         0.62 
TCGA-EP-A3JL TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3R3 
        9.96        22.85        14.40        32.45        19.10         0.13 
TCGA-FV-A496 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W 
        0.33        60.36         0.39        53.79        28.27        30.74 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ 
       21.53        22.13         5.92        19.53        19.23        11.97 
TCGA-G3-A5SL TCGA-G3-A6UC TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E 
        7.99         7.76         4.01         0.49         9.57         5.10 
TCGA-NI-A4U2 TCGA-O8-A75V 
       58.88         4.44 

  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE 
                        113.00                         107.11 
  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE 
                         11.93                          18.92 
[1] "0.0 - 113.0 (11.9)" "0.1 - 107.1 (18.9)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 20(13Q14.2) WILD-TYPE" 
[1] "hr=" "1.4"
D48V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 20(13Q14.2) MUTATED        18       23         1         13
  DEL PEAK 20(13Q14.2) WILD-TYPE      40       13         1         17
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 20(13Q14.2) MUTATED            1          3        0         0
  DEL PEAK 20(13Q14.2) WILD-TYPE          3          2        1         1
                                vv
clus                             STAGE IVB
  DEL PEAK 20(13Q14.2) MUTATED           2
  DEL PEAK 20(13Q14.2) WILD-TYPE         0
D48V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 20(13Q14.2) MUTATED   18 26 17  7
  DEL PEAK 20(13Q14.2) WILD-TYPE 43 14 23  1
D48V4, multiclass
    clus
vv   DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  T1                           18                             43
  T2                           26                             14
  T3                           17                             23
  T4                            7                              1
D48V5, binary
                                cls
clus                              0  1
  DEL PEAK 20(13Q14.2) MUTATED   44  1
  DEL PEAK 20(13Q14.2) WILD-TYPE 53  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(13Q14.2) MUTATED     44    1
  DEL PEAK 20(13Q14.2) WILD-TYPE   53    2
   clus
vv  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  0                           44                             53
  1                            1                              2
                                vv
clus                             M0 M1 MX
  DEL PEAK 20(13Q14.2) MUTATED   54  2 12
  DEL PEAK 20(13Q14.2) WILD-TYPE 61  1 19
D48V6, multiclass
    clus
vv   DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  M0                           54                             61
  M1                            2                              1
  MX                           12                             19
D48V7, binary
                                cls
clus                              0  1
  DEL PEAK 20(13Q14.2) MUTATED   30 38
  DEL PEAK 20(13Q14.2) WILD-TYPE 28 53
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(13Q14.2) MUTATED     30   38
  DEL PEAK 20(13Q14.2) WILD-TYPE   28   53
        clus
vv       DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  FEMALE                           30                             28
  MALE                             38                             53
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 20(13Q14.2) MUTATED   53  5  0  7
  DEL PEAK 20(13Q14.2) WILD-TYPE 69  6  1  3
D48V8, multiclass
    clus
vv   DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  R0                           53                             69
  R1                            5                              6
  R2                            0                              1
  RX                            7                              3

Clustering(49) Variable = DEL PEAK 21(13Q22.2) MUTATION ANALYSIS
D49V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 21(13Q22.2) MUTATED   30 23
  DEL PEAK 21(13Q22.2) WILD-TYPE 54 40
  DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE 
                            53                             94 
  DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE 
                            23                             40 
$`DEL PEAK 21(13Q22.2) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10Y TCGA-BC-A112 
       37.32        10.13        27.52         2.99        23.34         5.03 
TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-BC-A69H TCGA-CC-5260 
       13.84         0.26        22.36         9.50         3.95         2.86 
TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A115 
        3.39         4.24         0.10         0.07        79.73        83.57 
TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A11C TCGA-DD-A1EF TCGA-DD-A1EI TCGA-DD-A1EK 
       53.33       113.00        21.76        12.95         6.02        18.35 
TCGA-DD-A39X TCGA-DD-A3A0 TCGA-DD-A3A5 TCGA-DD-A3A9 TCGA-DD-A4NH TCGA-DD-A4NJ 
       55.69        25.81       102.74        30.61        14.24        15.06 
TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A73F TCGA-DD-A73G 
       29.56        61.45        12.26         0.30        27.72       100.96 
TCGA-ED-A4XI TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-EP-A3RK 
       12.69         0.23         0.20         0.20         0.20        11.93 
TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25X TCGA-G3-A25Y 
        0.20         6.38         1.22        51.06        58.49        14.86 
TCGA-G3-A3CH TCGA-G3-A5SI TCGA-G3-A5SM TCGA-MI-A75G TCGA-MI-A75I 
       25.64        14.70         4.37        14.24         8.71 

$`DEL PEAK 21(13Q22.2) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A10Z 
       48.99        27.91        46.78        27.52        25.32         1.12 
TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-A1HT 
       69.57        44.42         0.53         0.07         0.39         3.32 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B 
        0.10         0.13        37.78         7.33         2.60         0.46 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED 
       51.29        90.71        79.40        66.31        19.79        75.65 
TCGA-DD-A1EE TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39V 
        6.71        45.11        49.15        29.16        13.64        21.14 
TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 
        5.62        19.76         7.66        70.06        17.59        20.12 
TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4ND 
      107.11        13.78         0.36        33.14        12.85        73.38 
TCGA-DD-A4NF TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NP TCGA-DD-A4NS 
       14.07        18.44        39.78        56.25        93.67        80.75 
TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E 
       66.35        10.98         9.30         7.56        10.98         1.45 
TCGA-ED-A459 TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A7PY TCGA-ED-A82E 
       13.41        15.85        13.91        13.35         0.20         0.20 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
       18.74        19.99        11.74        10.98         0.62         9.96 
TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I1 TCGA-FV-A3R3 
       22.85        14.40        32.45        19.10         8.12         0.13 
TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25U TCGA-G3-A25V 
        0.03         0.33        60.36         0.39        53.79        28.27 
TCGA-G3-A25W TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
       30.74        21.53        22.13         5.92        19.53        19.23 
TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-LG-A6GG 
       11.97         7.99         7.76         1.02         4.01         0.49 
TCGA-MI-A75C TCGA-MI-A75E TCGA-NI-A4U2 TCGA-O8-A75V 
        9.57         5.10        58.88         4.44 

  DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE 
                        113.00                         107.11 
  DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE 
                        13.840                         14.235 
[1] "0.1 - 113.0 (13.8)" "0.0 - 107.1 (14.2)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 21(13Q22.2) WILD-TYPE" 
[1] "hr=" "1"  
D49V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 21(13Q22.2) MUTATED        14       16         1         11
  DEL PEAK 21(13Q22.2) WILD-TYPE      44       20         1         19
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 21(13Q22.2) MUTATED            1          2        0         0
  DEL PEAK 21(13Q22.2) WILD-TYPE          3          3        1         1
                                vv
clus                             STAGE IVB
  DEL PEAK 21(13Q22.2) MUTATED           2
  DEL PEAK 21(13Q22.2) WILD-TYPE         0
D49V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 21(13Q22.2) MUTATED   14 18 15  7
  DEL PEAK 21(13Q22.2) WILD-TYPE 47 22 25  1
D49V4, multiclass
    clus
vv   DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE
  T1                           14                             47
  T2                           18                             22
  T3                           15                             25
  T4                            7                              1
D49V5, binary
                                cls
clus                              0  1
  DEL PEAK 21(13Q22.2) MUTATED   35  0
  DEL PEAK 21(13Q22.2) WILD-TYPE 62  3
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(13Q22.2) MUTATED     35    0
  DEL PEAK 21(13Q22.2) WILD-TYPE   62    3
   clus
vv  DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE
  0                           35                             62
  1                            0                              3
                                vv
clus                             M0 M1 MX
  DEL PEAK 21(13Q22.2) MUTATED   43  2  9
  DEL PEAK 21(13Q22.2) WILD-TYPE 72  1 22
D49V6, multiclass
    clus
vv   DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE
  M0                           43                             72
  M1                            2                              1
  MX                            9                             22
D49V7, binary
                                cls
clus                              0  1
  DEL PEAK 21(13Q22.2) MUTATED   25 29
  DEL PEAK 21(13Q22.2) WILD-TYPE 33 62
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(13Q22.2) MUTATED     25   29
  DEL PEAK 21(13Q22.2) WILD-TYPE   33   62
        clus
vv       DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE
  FEMALE                           25                             33
  MALE                             29                             62
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 21(13Q22.2) MUTATED   43  5  0  4
  DEL PEAK 21(13Q22.2) WILD-TYPE 79  6  1  6
D49V8, multiclass
    clus
vv   DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE
  R0                           43                             79
  R1                            5                              6
  R2                            0                              1
  RX                            4                              6

Clustering(50) Variable = DEL PEAK 22(14Q23.3) MUTATION ANALYSIS
D50V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 22(14Q23.3) MUTATED   30 20
  DEL PEAK 22(14Q23.3) WILD-TYPE 54 43
  DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE 
                            50                             97 
  DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE 
                            20                             43 
$`DEL PEAK 22(14Q23.3) MUTATED`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10Z TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A3KF 
       27.91        37.32         1.12         5.03        44.42         0.26 
TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-A1HT TCGA-CC-A3MA 
       22.36         0.07         2.86         0.39         3.32         0.07 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A11A 
        0.10         0.13        79.73        83.57       113.00         2.60 
TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EG TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL 
       21.76        90.71        45.11         6.02        29.16        13.64 
TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A1 TCGA-DD-A3A7 TCGA-DD-A3A9 TCGA-DD-A4NB 
       55.69         5.62         7.66        13.78        30.61        12.85 
TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NO TCGA-DD-A4NQ TCGA-DD-A73F TCGA-ED-A459 
       14.24        18.44        61.45        12.26        27.72        13.41 
TCGA-ED-A7PX TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A2KB 
        0.20         0.20         0.20         0.20        18.74        10.98 
TCGA-EP-A3RK TCGA-FV-A3I0 TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25X TCGA-G3-A3CH 
       11.93         0.20        60.36         1.22        58.49        25.64 
TCGA-G3-A5SM TCGA-GJ-A6C0 
        4.37         1.02 

$`DEL PEAK 22(14Q23.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W 
       48.99        10.13        46.78        27.52        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A110 TCGA-BC-A217 TCGA-BC-A5W4 TCGA-BC-A69H 
       25.32        23.34        69.57        13.84         9.50         3.95 
TCGA-BC-A69I TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A3M9 TCGA-DD-A114 TCGA-DD-A116 
        0.53         3.39         4.24         0.10        37.78        53.33 
TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC 
        7.33         0.46        51.29        79.40        66.31        19.79 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EK TCGA-DD-A39V 
       75.65         6.71        12.95        49.15        18.35        21.14 
TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 
       19.76        25.81        70.06        17.59        20.12       102.74 
TCGA-DD-A3A6 TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NJ 
      107.11         0.36        33.14        73.38        14.07        15.06 
TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NP TCGA-DD-A4NR TCGA-DD-A4NS 
       39.78        56.25        29.56        93.67         0.30        80.75 
TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E 
       66.35        10.98         9.30         7.56        10.98         1.45 
TCGA-DD-A73G TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A66Y 
      100.96        12.69        15.85        13.91        13.35         0.23 
TCGA-ED-A7PY TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KC TCGA-EP-A3JL TCGA-ES-A2HS 
        0.20        19.99        11.74         0.62         9.96        22.85 
TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 
       14.40        32.45        19.10         8.12         6.38         0.13 
TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V 
        0.03         0.33         0.39        51.06        53.79        28.27 
TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CI TCGA-G3-A3CJ 
       30.74        14.86        21.53        22.13         5.92        19.53 
TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A6UC TCGA-K7-A6G5 
       19.23        14.70        11.97         7.99         7.76         4.01 
TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75G TCGA-MI-A75I TCGA-NI-A4U2 
        0.49         9.57         5.10        14.24         8.71        58.88 
TCGA-O8-A75V 
        4.44 

  DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE 
                        113.00                         107.11 
  DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE 
                        12.555                         14.860 
[1] "0.1 - 113.0 (12.6)" "0.0 - 107.1 (14.9)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 22(14Q23.3) WILD-TYPE" 
[1] "hr=" "1"  
D50V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 22(14Q23.3) MUTATED        15       16         0         13
  DEL PEAK 22(14Q23.3) WILD-TYPE      43       20         2         17
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 22(14Q23.3) MUTATED            2          2        0         0
  DEL PEAK 22(14Q23.3) WILD-TYPE          2          3        1         1
                                vv
clus                             STAGE IVB
  DEL PEAK 22(14Q23.3) MUTATED           1
  DEL PEAK 22(14Q23.3) WILD-TYPE         1
D50V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 22(14Q23.3) MUTATED   16 17 16  2
  DEL PEAK 22(14Q23.3) WILD-TYPE 45 23 24  6
D50V4, multiclass
    clus
vv   DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE
  T1                           16                             45
  T2                           17                             23
  T3                           16                             24
  T4                            2                              6
D50V5, binary
                                cls
clus                              0  1
  DEL PEAK 22(14Q23.3) MUTATED   34  1
  DEL PEAK 22(14Q23.3) WILD-TYPE 63  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(14Q23.3) MUTATED     34    1
  DEL PEAK 22(14Q23.3) WILD-TYPE   63    2
   clus
vv  DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE
  0                           34                             63
  1                            1                              2
                                vv
clus                             M0 M1 MX
  DEL PEAK 22(14Q23.3) MUTATED   42  1  8
  DEL PEAK 22(14Q23.3) WILD-TYPE 73  2 23
D50V6, multiclass
    clus
vv   DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE
  M0                           42                             73
  M1                            1                              2
  MX                            8                             23
D50V7, binary
                                cls
clus                              0  1
  DEL PEAK 22(14Q23.3) MUTATED   19 32
  DEL PEAK 22(14Q23.3) WILD-TYPE 39 59
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(14Q23.3) MUTATED     19   32
  DEL PEAK 22(14Q23.3) WILD-TYPE   39   59
        clus
vv       DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE
  FEMALE                           19                             39
  MALE                             32                             59
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 22(14Q23.3) MUTATED   39  4  0  6
  DEL PEAK 22(14Q23.3) WILD-TYPE 83  7  1  4
D50V8, multiclass
    clus
vv   DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE
  R0                           39                             83
  R1                            4                              7
  R2                            0                              1
  RX                            6                              4

Clustering(51) Variable = DEL PEAK 23(14Q32.33) MUTATION ANALYSIS
D51V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 23(14Q32.33) MUTATED   30 21
  DEL PEAK 23(14Q32.33) WILD-TYPE 54 42
  DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE 
                             51                              96 
  DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE 
                             21                              42 
$`DEL PEAK 23(14Q32.33) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10Z TCGA-BC-A112 TCGA-BC-A217 
       37.32        10.13        27.52         1.12         5.03        13.84 
TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-A1HT 
        0.26        22.36         0.07         2.86         0.39         3.32 
TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A11A 
        0.07         0.10         0.13        79.73        83.57         2.60 
TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EG TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL 
       21.76        90.71        45.11         6.02        29.16        13.64 
TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A1 TCGA-DD-A3A7 TCGA-DD-A3A9 TCGA-DD-A4NB 
       55.69         5.62         7.66        13.78        30.61        12.85 
TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NO TCGA-DD-A4NQ TCGA-DD-A73G 
       14.24        18.44        15.06        61.45        12.26       100.96 
TCGA-ED-A459 TCGA-ED-A7PX TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-ED-A82E TCGA-EP-A12J 
       13.41         0.20         0.20         0.20         0.20        18.74 
TCGA-EP-A2KB TCGA-EP-A3RK TCGA-FV-A3I0 TCGA-FV-A495 TCGA-FV-A4ZP TCGA-G3-A25S 
       10.98        11.93         0.20         0.03        60.36         1.22 
TCGA-G3-A25X TCGA-G3-A3CH TCGA-G3-A5SM 
       58.49        25.64         4.37 

$`DEL PEAK 23(14Q32.33) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X 
       48.99        27.91        46.78        27.52         2.99        25.32 
TCGA-BC-A10Y TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A5W4 TCGA-BC-A69H TCGA-BC-A69I 
       23.34        69.57        44.42         9.50         3.95         0.53 
TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A3M9 TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A118 
        3.39         4.24         0.10        37.78        53.33       113.00 
TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC 
        7.33         0.46        51.29        79.40        66.31        19.79 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EK TCGA-DD-A39V 
       75.65         6.71        12.95        49.15        18.35        21.14 
TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 
       19.76        25.81        70.06        17.59        20.12       102.74 
TCGA-DD-A3A6 TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NK 
      107.11         0.36        33.14        73.38        14.07        39.78 
TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NP TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV 
       56.25        29.56        93.67         0.30        80.75        66.35 
TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F 
       10.98         9.30         7.56        10.98         1.45        27.72 
TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PY 
       12.69        15.85        13.91        13.35         0.23         0.20 
TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KC TCGA-EP-A3JL TCGA-ES-A2HS TCGA-ES-A2HT 
       19.99        11.74         0.62         9.96        22.85        14.40 
TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A496 
       32.45        19.10         8.12         6.38         0.13         0.33 
TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y 
        0.39        51.06        53.79        28.27        30.74        14.86 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI 
       21.53        22.13         5.92        19.53        19.23        14.70 
TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-LG-A6GG 
       11.97         7.99         7.76         1.02         4.01         0.49 
TCGA-MI-A75C TCGA-MI-A75E TCGA-MI-A75G TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
        9.57         5.10        14.24         8.71        58.88         4.44 

  DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE 
                           0.03                            0.10 
  DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE 
                         100.96                          113.00 
  DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE 
                          12.26                           16.72 
[1] "0.0 - 101.0 (12.3)" "0.1 - 113.0 (16.7)"
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-O8-A75V 
"DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-O8-A75V 
"DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
  "DEL PEAK 23(14Q32.33) MUTATED"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 23(14Q32.33) WILD-TYPE"   "DEL PEAK 23(14Q32.33) MUTATED" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
  "DEL PEAK 23(14Q32.33) MUTATED" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
"DEL PEAK 23(14Q32.33) WILD-TYPE" "DEL PEAK 23(14Q32.33) WILD-TYPE" 
                     TCGA-O8-A75V 
"DEL PEAK 23(14Q32.33) WILD-TYPE" 
[1] "hr=" "1.2"
D51V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 23(14Q32.33) MUTATED        15       17         0         11
  DEL PEAK 23(14Q32.33) WILD-TYPE      43       19         2         19
                                 vv
clus                              STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 23(14Q32.33) MUTATED            2          2        0         0
  DEL PEAK 23(14Q32.33) WILD-TYPE          2          3        1         1
                                 vv
clus                              STAGE IVB
  DEL PEAK 23(14Q32.33) MUTATED           1
  DEL PEAK 23(14Q32.33) WILD-TYPE         1
D51V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 23(14Q32.33) MUTATED   16 18 15  3
  DEL PEAK 23(14Q32.33) WILD-TYPE 45 22 25  5
D51V4, multiclass
    clus
vv   DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE
  T1                            16                              45
  T2                            18                              22
  T3                            15                              25
  T4                             3                               5
D51V5, binary
                                 cls
clus                               0  1
  DEL PEAK 23(14Q32.33) MUTATED   33  1
  DEL PEAK 23(14Q32.33) WILD-TYPE 64  2
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 23(14Q32.33) MUTATED     33    1
  DEL PEAK 23(14Q32.33) WILD-TYPE   64    2
   clus
vv  DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE
  0                            33                              64
  1                             1                               2
                                 vv
clus                              M0 M1 MX
  DEL PEAK 23(14Q32.33) MUTATED   43  1  8
  DEL PEAK 23(14Q32.33) WILD-TYPE 72  2 23
D51V6, multiclass
    clus
vv   DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE
  M0                            43                              72
  M1                             1                               2
  MX                             8                              23
D51V7, binary
                                 cls
clus                               0  1
  DEL PEAK 23(14Q32.33) MUTATED   20 32
  DEL PEAK 23(14Q32.33) WILD-TYPE 38 59
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 23(14Q32.33) MUTATED     20   32
  DEL PEAK 23(14Q32.33) WILD-TYPE   38   59
        clus
vv       DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE
  FEMALE                            20                              38
  MALE                              32                              59
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 23(14Q32.33) MUTATED   41  4  0  5
  DEL PEAK 23(14Q32.33) WILD-TYPE 81  7  1  5
D51V8, multiclass
    clus
vv   DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE
  R0                            41                              81
  R1                             4                               7
  R2                             0                               1
  RX                             5                               5

Clustering(52) Variable = DEL PEAK 24(16Q23.1) MUTATION ANALYSIS
D52V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 24(16Q23.1) MUTATED   34 26
  DEL PEAK 24(16Q23.1) WILD-TYPE 50 37
  DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE 
                            60                             87 
  DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE 
                            26                             37 
$`DEL PEAK 24(16Q23.1) MUTATED`
TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10W TCGA-BC-A10Y TCGA-BC-A10Z 
       27.91        10.13        46.78         2.99        23.34         1.12 
TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG TCGA-BC-A69H TCGA-CC-5258 TCGA-CC-5260 
       44.42        13.84        22.36         3.95         0.07         2.86 
TCGA-CC-5261 TCGA-CC-5263 TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 
        0.39         4.24         0.10         0.10         0.13        79.73 
TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A1EF TCGA-DD-A1EH 
       37.78        53.33         2.60         0.46        12.95        49.15 
TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A8 TCGA-DD-A3A9 
        6.02        29.16         5.62        19.76         0.36        30.61 
TCGA-DD-A4ND TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NN TCGA-DD-A4NO 
       73.38        14.24        18.44        15.06        29.56        61.45 
TCGA-DD-A4NQ TCGA-DD-A73B TCGA-DD-A73F TCGA-ED-A459 TCGA-ED-A5KG TCGA-ED-A66X 
       12.26         9.30        27.72        13.41        15.85        13.35 
TCGA-ED-A66Y TCGA-ED-A7PY TCGA-EP-A2KB TCGA-ES-A2HS TCGA-FV-A23B TCGA-FV-A3I0 
        0.23         0.20        10.98        22.85        32.45         0.20 
TCGA-FV-A3R2 TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z 
        6.38         1.22        53.79        58.49        14.86        21.53 
TCGA-G3-A3CH TCGA-G3-A5SI TCGA-LG-A6GG TCGA-MI-A75G TCGA-MI-A75I TCGA-O8-A75V 
       25.64        14.70         0.49        14.24         8.71         4.44 

$`DEL PEAK 24(16Q23.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A110 
       48.99        37.32        27.52        27.52        25.32        69.57 
TCGA-BC-A112 TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-BC-A69I TCGA-CC-5262 TCGA-CC-A1HT 
        5.03         0.26         9.50         0.53         3.39         3.32 
TCGA-CC-A3MA TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11C TCGA-DD-A11D 
        0.07        83.57       113.00         7.33        21.76        51.29 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       90.71        79.40        66.31        19.79        75.65         6.71 
TCGA-DD-A1EG TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A3A0 
       45.11        18.35        13.64        21.14        55.69        25.81 
TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 
        7.66        70.06        17.59        20.12       102.74       107.11 
TCGA-DD-A3A7 TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4NF TCGA-DD-A4NK TCGA-DD-A4NL 
       13.78        33.14        12.85        14.07        39.78        56.25 
TCGA-DD-A4NP TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73C 
       93.67         0.30        80.75        66.35        10.98         7.56 
TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73G TCGA-ED-A4XI TCGA-ED-A627 TCGA-ED-A7PX 
       10.98         1.45       100.96        12.69        13.91         0.20 
TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-ED-A82E TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA 
        0.20         0.20         0.20        18.74        19.99        11.74 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3I1 
        0.62         9.96        11.93        14.40        19.10         8.12 
TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25T 
        0.13         0.03         0.33        60.36         0.39        51.06 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A3CG TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
       28.27        30.74        22.13         5.92        19.53        19.23 
TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-K7-A6G5 
       11.97         7.99         4.37         7.76         1.02         4.01 
TCGA-MI-A75C TCGA-MI-A75E TCGA-NI-A4U2 
        9.57         5.10        58.88 

  DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE 
                         79.73                         113.00 
  DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE 
                        13.625                         14.400 
[1] "0.1 - 79.7 (13.6)"  "0.0 - 113.0 (14.4)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-O8-A75V 
  "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-O8-A75V 
  "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK 24(16Q23.1) MUTATED"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"DEL PEAK 24(16Q23.1) WILD-TYPE" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 24(16Q23.1) WILD-TYPE"   "DEL PEAK 24(16Q23.1) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "DEL PEAK 24(16Q23.1) MUTATED" "DEL PEAK 24(16Q23.1) WILD-TYPE" 
                    TCGA-O8-A75V 
  "DEL PEAK 24(16Q23.1) MUTATED" 
[1] "hr=" "1.5"
D52V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 24(16Q23.1) MUTATED        19       21         1         11
  DEL PEAK 24(16Q23.1) WILD-TYPE      39       15         1         19
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 24(16Q23.1) MUTATED            1          2        0         1
  DEL PEAK 24(16Q23.1) WILD-TYPE          3          3        1         0
                                vv
clus                             STAGE IVB
  DEL PEAK 24(16Q23.1) MUTATED           1
  DEL PEAK 24(16Q23.1) WILD-TYPE         1
D52V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 24(16Q23.1) MUTATED   21 22 15  4
  DEL PEAK 24(16Q23.1) WILD-TYPE 40 18 25  4
D52V4, multiclass
    clus
vv   DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE
  T1                           21                             40
  T2                           22                             18
  T3                           15                             25
  T4                            4                              4
D52V5, binary
                                cls
clus                              0  1
  DEL PEAK 24(16Q23.1) MUTATED   41  2
  DEL PEAK 24(16Q23.1) WILD-TYPE 56  1
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(16Q23.1) MUTATED     41    2
  DEL PEAK 24(16Q23.1) WILD-TYPE   56    1
   clus
vv  DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE
  0                           41                             56
  1                            2                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK 24(16Q23.1) MUTATED   49  1 12
  DEL PEAK 24(16Q23.1) WILD-TYPE 66  2 19
D52V6, multiclass
    clus
vv   DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE
  M0                           49                             66
  M1                            1                              2
  MX                           12                             19
D52V7, binary
                                cls
clus                              0  1
  DEL PEAK 24(16Q23.1) MUTATED   26 36
  DEL PEAK 24(16Q23.1) WILD-TYPE 32 55
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(16Q23.1) MUTATED     26   36
  DEL PEAK 24(16Q23.1) WILD-TYPE   32   55
        clus
vv       DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE
  FEMALE                           26                             32
  MALE                             36                             55
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 24(16Q23.1) MUTATED   52  4  0  6
  DEL PEAK 24(16Q23.1) WILD-TYPE 70  7  1  4
D52V8, multiclass
    clus
vv   DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE
  R0                           52                             70
  R1                            4                              7
  R2                            0                              1
  RX                            6                              4

Clustering(53) Variable = DEL PEAK 25(17P11.2) MUTATION ANALYSIS
D53V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 25(17P11.2) MUTATED   40 38
  DEL PEAK 25(17P11.2) WILD-TYPE 44 25
  DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE 
                            78                             69 
  DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE 
                            38                             25 
$`DEL PEAK 25(17P11.2) MUTATED`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10Y 
       48.99        27.91        10.13        27.52        27.52        23.34 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG 
        1.12        69.57         5.03        13.84         0.26        22.36 
TCGA-BC-A5W4 TCGA-BC-A69H TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 
        9.50         3.95         0.07         0.39         3.39         4.24 
TCGA-CC-A1HT TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 
        3.32         0.07         0.10         0.13        37.78        83.57 
TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1EA 
       53.33       113.00         7.33        21.76        51.29        79.40 
TCGA-DD-A1EB TCGA-DD-A1EG TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EK TCGA-DD-A1EL 
       66.31        45.11         6.02        29.16        18.35        13.64 
TCGA-DD-A39Y TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A7 TCGA-DD-A4NA 
        5.62        17.59        20.12       102.74        13.78        33.14 
TCGA-DD-A4NB TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NO TCGA-DD-A4NQ 
       12.85        14.24        18.44        15.06        61.45        12.26 
TCGA-DD-A73B TCGA-DD-A73E TCGA-ED-A459 TCGA-ED-A7PX TCGA-ED-A82E TCGA-EP-A2KC 
        9.30         1.45        13.41         0.20         0.20         0.62 
TCGA-ES-A2HS TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R2 
       22.85        32.45        19.10         0.20         8.12         6.38 
TCGA-FV-A495 TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W 
        0.03        60.36         1.22        53.79        28.27        30.74 
TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A5SL TCGA-G3-A5SM 
       14.86        21.53        22.13        25.64         7.99         4.37 
TCGA-GJ-A6C0 TCGA-LG-A6GG TCGA-MI-A75E TCGA-MI-A75G TCGA-MI-A75I TCGA-NI-A4U2 
        1.02         0.49         5.10        14.24         8.71        58.88 

$`DEL PEAK 25(17P11.2) WILD-TYPE`
TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A216 TCGA-BC-A69I 
       37.32        46.78         2.99        25.32        44.42         0.53 
TCGA-CC-5260 TCGA-CC-A3M9 TCGA-DD-A113 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A1E9 
        2.86         0.10        79.73         2.60         0.46        90.71 
TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A39V 
       19.79        75.65         6.71        12.95        49.15        21.14 
TCGA-DD-A39X TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A6 
       55.69        19.76        25.81         7.66        70.06       107.11 
TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NK TCGA-DD-A4NL 
        0.36        30.61        73.38        14.07        39.78        56.25 
TCGA-DD-A4NN TCGA-DD-A4NP TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A 
       29.56        93.67         0.30        80.75        66.35        10.98 
TCGA-DD-A73C TCGA-DD-A73D TCGA-DD-A73F TCGA-DD-A73G TCGA-ED-A4XI TCGA-ED-A5KG 
        7.56        10.98        27.72       100.96        12.69        15.85 
TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PY TCGA-ED-A7PZ TCGA-ED-A7XP 
       13.91        13.35         0.23         0.20         0.20         0.20 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A3JL TCGA-EP-A3RK 
       18.74        19.99        11.74        10.98         9.96        11.93 
TCGA-ES-A2HT TCGA-FV-A3R3 TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25X 
       14.40         0.13         0.33         0.39        51.06        58.49 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A6UC 
        5.92        19.53        19.23        14.70        11.97         7.76 
TCGA-K7-A6G5 TCGA-MI-A75C TCGA-O8-A75V 
        4.01         9.57         4.44 

  DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE 
                        113.00                         107.11 
  DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE 
                         14.04                          14.07 
[1] "0.0 - 113.0 (14.0)" "0.1 - 107.1 (14.1)"
                    TCGA-BC-4072                     TCGA-BC-4073 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-O8-A75V 
"DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-O8-A75V 
"DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-O8-A75V 
"DEL PEAK 25(17P11.2) WILD-TYPE" 
[1] "hr=" "1.5"
D53V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 25(17P11.2) MUTATED        23       22         1         16
  DEL PEAK 25(17P11.2) WILD-TYPE      35       14         1         14
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 25(17P11.2) MUTATED            3          4        1         1
  DEL PEAK 25(17P11.2) WILD-TYPE          1          1        0         0
                                vv
clus                             STAGE IVB
  DEL PEAK 25(17P11.2) MUTATED           1
  DEL PEAK 25(17P11.2) WILD-TYPE         1
D53V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 25(17P11.2) MUTATED   26 25 23  5
  DEL PEAK 25(17P11.2) WILD-TYPE 35 15 17  3
D53V4, multiclass
    clus
vv   DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE
  T1                           26                             35
  T2                           25                             15
  T3                           23                             17
  T4                            5                              3
D53V5, binary
                                cls
clus                              0  1
  DEL PEAK 25(17P11.2) MUTATED   50  3
  DEL PEAK 25(17P11.2) WILD-TYPE 47  0
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(17P11.2) MUTATED     50    3
  DEL PEAK 25(17P11.2) WILD-TYPE   47    0
   clus
vv  DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE
  0                           50                             47
  1                            3                              0
                                vv
clus                             M0 M1 MX
  DEL PEAK 25(17P11.2) MUTATED   61  2 16
  DEL PEAK 25(17P11.2) WILD-TYPE 54  1 15
D53V6, multiclass
    clus
vv   DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE
  M0                           61                             54
  M1                            2                              1
  MX                           16                             15
D53V7, binary
                                cls
clus                              0  1
  DEL PEAK 25(17P11.2) MUTATED   28 51
  DEL PEAK 25(17P11.2) WILD-TYPE 30 40
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(17P11.2) MUTATED     28   51
  DEL PEAK 25(17P11.2) WILD-TYPE   30   40
        clus
vv       DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE
  FEMALE                           28                             30
  MALE                             51                             40
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 25(17P11.2) MUTATED   62  8  1  6
  DEL PEAK 25(17P11.2) WILD-TYPE 60  3  0  4
D53V8, multiclass
    clus
vv   DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE
  R0                           62                             60
  R1                            8                              3
  R2                            1                              0
  RX                            6                              4

Clustering(54) Variable = DEL PEAK 26(19P13.3) MUTATION ANALYSIS
D54V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 26(19P13.3) MUTATED   19 13
  DEL PEAK 26(19P13.3) WILD-TYPE 65 50
  DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE 
                            32                            115 
  DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE 
                            13                             50 
$`DEL PEAK 26(19P13.3) MUTATED`
TCGA-BC-A10W TCGA-BC-A112 TCGA-BC-A3KF TCGA-BC-A69H TCGA-CC-5258 TCGA-CC-5263 
        2.99         5.03         0.26         3.95         0.07         4.24 
TCGA-CC-A1HT TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A118 TCGA-DD-A11A TCGA-DD-A1EG 
        3.32         0.13        79.73       113.00         2.60        45.11 
TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A9 
        6.02        29.16        13.64        55.69         5.62        30.61 
TCGA-DD-A4NJ TCGA-DD-A4NQ TCGA-DD-A73D TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A7PZ 
       15.06        12.26        10.98        13.41        12.69         0.20 
TCGA-FV-A3I1 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25X TCGA-G3-A3CH 
        8.12         0.33        60.36         1.22        58.49        25.64 
TCGA-G3-A5SM TCGA-MI-A75C 
        4.37         9.57 

$`DEL PEAK 26(19P13.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
       48.99        27.91        37.32        10.13        46.78        27.52 
TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 
       27.52        25.32        23.34         1.12        69.57        44.42 
TCGA-BC-A217 TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-BC-A69I TCGA-CC-5260 TCGA-CC-5261 
       13.84        22.36         9.50         0.53         2.86         0.39 
TCGA-CC-5262 TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-DD-A114 TCGA-DD-A115 
        3.39         0.10         0.07         0.10        37.78        83.57 
TCGA-DD-A116 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 
       53.33         7.33         0.46        21.76        51.29        90.71 
TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF 
       79.40        66.31        19.79        75.65         6.71        12.95 
TCGA-DD-A1EH TCGA-DD-A1EK TCGA-DD-A39V TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 
       49.15        18.35        21.14        19.76        25.81         7.66 
TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 
       70.06        17.59        20.12       102.74       107.11        13.78 
TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH 
        0.36        33.14        12.85        73.38        14.07        14.24 
TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP 
       18.44        39.78        56.25        29.56        61.45        93.67 
TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C 
        0.30        80.75        66.35        10.98         9.30         7.56 
TCGA-DD-A73E TCGA-DD-A73F TCGA-DD-A73G TCGA-ED-A5KG TCGA-ED-A627 TCGA-ED-A66X 
        1.45        27.72       100.96        15.85        13.91        13.35 
TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7PY TCGA-ED-A7XP TCGA-ED-A82E TCGA-EP-A12J 
        0.23         0.20         0.20         0.20         0.20        18.74 
TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK 
       19.99        11.74        10.98         0.62         9.96        11.93 
TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R2 
       22.85        14.40        32.45        19.10         0.20         6.38 
TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V 
        0.13         0.03         0.39        51.06        53.79        28.27 
TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CI TCGA-G3-A3CJ 
       30.74        14.86        21.53        22.13         5.92        19.53 
TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A6UC TCGA-GJ-A6C0 
       19.23        14.70        11.97         7.99         7.76         1.02 
TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75E TCGA-MI-A75G TCGA-MI-A75I TCGA-NI-A4U2 
        4.01         0.49         5.10        14.24         8.71        58.88 
TCGA-O8-A75V 
        4.44 

  DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE 
                        113.00                         107.11 
  DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE 
                         8.845                         15.850 
[1] "0.1 - 113.0 (8.8)"  "0.0 - 107.1 (15.8)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 26(19P13.3) MUTATED"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 26(19P13.3) MUTATED"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "DEL PEAK 26(19P13.3) MUTATED"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 26(19P13.3) MUTATED"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 26(19P13.3) MUTATED"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "DEL PEAK 26(19P13.3) MUTATED"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 26(19P13.3) MUTATED"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 26(19P13.3) MUTATED"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
  "DEL PEAK 26(19P13.3) MUTATED"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
  "DEL PEAK 26(19P13.3) MUTATED" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 26(19P13.3) WILD-TYPE"   "DEL PEAK 26(19P13.3) MUTATED" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"DEL PEAK 26(19P13.3) WILD-TYPE" "DEL PEAK 26(19P13.3) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 26(19P13.3) WILD-TYPE" 
[1] "hr=" "1.1"
D54V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 26(19P13.3) MUTATED         9       14         0          5
  DEL PEAK 26(19P13.3) WILD-TYPE      49       22         2         25
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 26(19P13.3) MUTATED            0          1        0         0
  DEL PEAK 26(19P13.3) WILD-TYPE          4          4        1         1
                                vv
clus                             STAGE IVB
  DEL PEAK 26(19P13.3) MUTATED           1
  DEL PEAK 26(19P13.3) WILD-TYPE         1
D54V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 26(19P13.3) MUTATED   10 14  6  2
  DEL PEAK 26(19P13.3) WILD-TYPE 51 26 34  6
D54V4, multiclass
    clus
vv   DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  T1                           10                             51
  T2                           14                             26
  T3                            6                             34
  T4                            2                              6
D54V5, binary
                                cls
clus                              0  1
  DEL PEAK 26(19P13.3) MUTATED   20  1
  DEL PEAK 26(19P13.3) WILD-TYPE 77  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(19P13.3) MUTATED     20    1
  DEL PEAK 26(19P13.3) WILD-TYPE   77    2
   clus
vv  DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  0                           20                             77
  1                            1                              2
                                vv
clus                             M0 M1 MX
  DEL PEAK 26(19P13.3) MUTATED   27  1  4
  DEL PEAK 26(19P13.3) WILD-TYPE 88  2 27
D54V6, multiclass
    clus
vv   DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  M0                           27                             88
  M1                            1                              2
  MX                            4                             27
D54V7, binary
                                cls
clus                              0  1
  DEL PEAK 26(19P13.3) MUTATED   10 22
  DEL PEAK 26(19P13.3) WILD-TYPE 48 69
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(19P13.3) MUTATED     10   22
  DEL PEAK 26(19P13.3) WILD-TYPE   48   69
        clus
vv       DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  FEMALE                           10                             48
  MALE                             22                             69
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 26(19P13.3) MUTATED   26  3  0  2
  DEL PEAK 26(19P13.3) WILD-TYPE 96  8  1  8
D54V8, multiclass
    clus
vv   DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  R0                           26                             96
  R1                            3                              8
  R2                            0                              1
  RX                            2                              8

Clustering(55) Variable = DEL PEAK 27(20P12.1) MUTATION ANALYSIS
D55V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 27(20P12.1) MUTATED    4  7
  DEL PEAK 27(20P12.1) WILD-TYPE 80 56
  DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE 
                            11                            136 
  DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE 
                             7                             56 
$`DEL PEAK 27(20P12.1) MUTATED`
TCGA-BC-A10Z TCGA-CC-A3MC TCGA-DD-A1EK TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A3A3 
        1.12         0.13        18.35        21.14         5.62        17.59 
TCGA-DD-A3A5 TCGA-DD-A4NO TCGA-DD-A4NQ TCGA-DD-A73F TCGA-ED-A7PX 
      102.74        61.45        12.26        27.72         0.20 

$`DEL PEAK 27(20P12.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
       48.99        27.91        37.32        10.13        46.78        27.52 
TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A110 TCGA-BC-A112 
       27.52         2.99        25.32        23.34        69.57         5.03 
TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-BC-A69H 
       44.42        13.84         0.26        22.36         9.50         3.95 
TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 
        0.53         0.07         2.86         0.39         3.39         4.24 
TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A114 
        3.32         0.10         0.07         0.10        79.73        37.78 
TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B 
       83.57        53.33       113.00         7.33         2.60         0.46 
TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC 
       21.76        51.29        90.71        79.40        66.31        19.79 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EI 
       75.65         6.71        12.95        45.11        49.15         6.02 
TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39X TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 
       29.16        13.64        55.69        19.76        25.81         7.66 
TCGA-DD-A3A2 TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 
       70.06        20.12       107.11        13.78         0.36        30.61 
TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NI 
       33.14        12.85        73.38        14.07        14.24        18.44 
TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NP TCGA-DD-A4NR 
       15.06        39.78        56.25        29.56        93.67         0.30 
TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73B TCGA-DD-A73C TCGA-DD-A73D 
       80.75        66.35        10.98         9.30         7.56        10.98 
TCGA-DD-A73E TCGA-DD-A73G TCGA-ED-A459 TCGA-ED-A4XI TCGA-ED-A5KG TCGA-ED-A627 
        1.45       100.96        13.41        12.69        15.85        13.91 
TCGA-ED-A66X TCGA-ED-A66Y TCGA-ED-A7PY TCGA-ED-A7PZ TCGA-ED-A7XP TCGA-ED-A82E 
       13.35         0.23         0.20         0.20         0.20         0.20 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
       18.74        19.99        11.74        10.98         0.62         9.96 
TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 
       11.93        22.85        14.40        32.45        19.10         0.20 
TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP 
        8.12         6.38         0.13         0.03         0.33        60.36 
TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W 
        0.39         1.22        51.06        53.79        28.27        30.74 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
       58.49        14.86        21.53        22.13        25.64         5.92 
TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SI TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM 
       19.53        19.23        14.70        11.97         7.99         4.37 
TCGA-G3-A6UC TCGA-GJ-A6C0 TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E 
        7.76         1.02         4.01         0.49         9.57         5.10 
TCGA-MI-A75G TCGA-MI-A75I TCGA-NI-A4U2 TCGA-O8-A75V 
       14.24         8.71        58.88         4.44 

  DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE 
                          0.13                           0.03 
  DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE 
                        102.74                         113.00 
  DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE 
                         17.59                          13.99 
[1] "0.1 - 102.7 (17.6)" "0.0 - 113.0 (14.0)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BC-A69H                     TCGA-BC-A69I 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EG 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EK 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A4NB                     TCGA-DD-A4ND 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NH 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A4NI                     TCGA-DD-A4NJ 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A4NK                     TCGA-DD-A4NL 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A4NN                     TCGA-DD-A4NO 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-DD-A4NP                     TCGA-DD-A4NQ 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-DD-A4NR                     TCGA-DD-A4NS 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A4NV                     TCGA-DD-A73A 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A73B                     TCGA-DD-A73C 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A73D                     TCGA-DD-A73E 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DD-A73F                     TCGA-DD-A73G 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ED-A459                     TCGA-ED-A4XI 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-ED-A627 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ED-A66X                     TCGA-ED-A66Y 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ED-A7PX                     TCGA-ED-A7PY 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ED-A7PZ                     TCGA-ED-A7XP 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ED-A82E                     TCGA-EP-A12J 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3I1 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FV-A3R2                     TCGA-FV-A3R3 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FV-A495                     TCGA-FV-A496 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FV-A4ZP                     TCGA-FV-A4ZQ 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A3CK                     TCGA-G3-A5SI 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SL 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-G3-A5SM                     TCGA-G3-A6UC 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-GJ-A6C0                     TCGA-K7-A6G5 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-LG-A6GG                     TCGA-MI-A75C 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-MI-A75E                     TCGA-MI-A75G 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-MI-A75I                     TCGA-NI-A4U2 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-O8-A75V 
"DEL PEAK 27(20P12.1) WILD-TYPE" 
[1] "hr=" "1.5"
D55V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 27(20P12.1) MUTATED         5        3         1          1
  DEL PEAK 27(20P12.1) WILD-TYPE      53       33         1         29
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 27(20P12.1) MUTATED            0          0        0         0
  DEL PEAK 27(20P12.1) WILD-TYPE          4          5        1         1
                                vv
clus                             STAGE IVB
  DEL PEAK 27(20P12.1) MUTATED           1
  DEL PEAK 27(20P12.1) WILD-TYPE         1
D55V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 27(20P12.1) MUTATED    5  3  2  1
  DEL PEAK 27(20P12.1) WILD-TYPE 56 37 38  7
D55V4, multiclass
    clus
vv   DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE
  T1                            5                             56
  T2                            3                             37
  T3                            2                             38
  T4                            1                              7
D55V5, binary
                                cls
clus                              0  1
  DEL PEAK 27(20P12.1) MUTATED    8  0
  DEL PEAK 27(20P12.1) WILD-TYPE 89  3
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(20P12.1) MUTATED      8    0
  DEL PEAK 27(20P12.1) WILD-TYPE   89    3
   clus
vv  DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE
  0                            8                             89
  1                            0                              3
                                vv
clus                              M0  M1  MX
  DEL PEAK 27(20P12.1) MUTATED     9   1   1
  DEL PEAK 27(20P12.1) WILD-TYPE 106   2  30
D55V6, multiclass
    clus
vv   DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE
  M0                            9                            106
  M1                            1                              2
  MX                            1                             30
D55V7, binary
                                cls
clus                              0  1
  DEL PEAK 27(20P12.1) MUTATED    5  6
  DEL PEAK 27(20P12.1) WILD-TYPE 53 85
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(20P12.1) MUTATED      5    6
  DEL PEAK 27(20P12.1) WILD-TYPE   53   85
        clus
vv       DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE
  FEMALE                            5                             53
  MALE                              6                             85
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 27(20P12.1) MUTATED    11   0   0   0
  DEL PEAK 27(20P12.1) WILD-TYPE 111  11   1  10
D55V8, multiclass
    clus
vv   DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE
  R0                           11                            111
  R1                            0                             11
  R2                            0                              1
  RX                            0                             10

Clustering(56) Variable = DEL PEAK 28(22Q13.32) MUTATION ANALYSIS
D56V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 28(22Q13.32) MUTATED   23 17
  DEL PEAK 28(22Q13.32) WILD-TYPE 61 46
  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                             40                             107 
  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                             17                              46 
$`DEL PEAK 28(22Q13.32) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10T TCGA-BC-A10Y TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG 
       37.32        27.52        23.34        13.84         0.26        22.36 
TCGA-BC-A5W4 TCGA-CC-5260 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-DD-A113 TCGA-DD-A114 
        9.50         2.86         3.32         0.10        79.73        37.78 
TCGA-DD-A115 TCGA-DD-A1EB TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A5 TCGA-DD-A3A6 
       83.57        66.31        55.69         5.62       102.74       107.11 
TCGA-DD-A3A7 TCGA-DD-A4NA TCGA-DD-A4NB TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NO 
       13.78        33.14        12.85        18.44        15.06        61.45 
TCGA-DD-A4NP TCGA-DD-A73B TCGA-ED-A459 TCGA-ED-A66Y TCGA-ED-A7PX TCGA-ED-A7XP 
       93.67         9.30        13.41         0.23         0.20         0.20 
TCGA-EP-A2KB TCGA-FV-A2QR TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A3CJ 
       10.98        19.10        60.36         1.22        51.06        19.53 
TCGA-G3-A5SI TCGA-MI-A75G TCGA-MI-A75I TCGA-NI-A4U2 
       14.70        14.24         8.71        58.88 

$`DEL PEAK 28(22Q13.32) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W 
       48.99        27.91        10.13        46.78        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A69H 
       25.32         1.12        69.57         5.03        44.42         3.95 
TCGA-BC-A69I TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A3MA 
        0.53         0.07         0.39         3.39         4.24         0.07 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A 
        0.10         0.13        53.33       113.00         7.33         2.60 
TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EC 
        0.46        21.76        51.29        90.71        79.40        19.79 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EG TCGA-DD-A1EH TCGA-DD-A1EI 
       75.65         6.71        12.95        45.11        49.15         6.02 
TCGA-DD-A1EJ TCGA-DD-A1EK TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39Z TCGA-DD-A3A0 
       29.16        18.35        13.64        21.14        19.76        25.81 
TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A8 TCGA-DD-A3A9 
        7.66        70.06        17.59        20.12         0.36        30.61 
TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN 
       73.38        14.07        14.24        39.78        56.25        29.56 
TCGA-DD-A4NQ TCGA-DD-A4NR TCGA-DD-A4NS TCGA-DD-A4NV TCGA-DD-A73A TCGA-DD-A73C 
       12.26         0.30        80.75        66.35        10.98         7.56 
TCGA-DD-A73D TCGA-DD-A73E TCGA-DD-A73F TCGA-DD-A73G TCGA-ED-A4XI TCGA-ED-A5KG 
       10.98         1.45        27.72       100.96        12.69        15.85 
TCGA-ED-A627 TCGA-ED-A66X TCGA-ED-A7PY TCGA-ED-A7PZ TCGA-ED-A82E TCGA-EP-A12J 
       13.91        13.35         0.20         0.20         0.20        18.74 
TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS 
       19.99        11.74         0.62         9.96        11.93        22.85 
TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 
       14.40        32.45         0.20         8.12         6.38         0.13 
TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W 
        0.03         0.33         0.39        53.79        28.27        30.74 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
       58.49        14.86        21.53        22.13        25.64         5.92 
TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM TCGA-G3-A6UC TCGA-GJ-A6C0 
       19.23        11.97         7.99         4.37         7.76         1.02 
TCGA-K7-A6G5 TCGA-LG-A6GG TCGA-MI-A75C TCGA-MI-A75E TCGA-O8-A75V 
        4.01         0.49         9.57         5.10         4.44 

  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                           0.10                            0.03 
  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                         107.11                          113.00 
  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                          16.75                           13.35 
[1] "0.1 - 107.1 (16.8)" "0.0 - 113.0 (13.3)"
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A115                      TCGA-DD-A116 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-O8-A75V 
"DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A115                      TCGA-DD-A116 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-O8-A75V 
"DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A69H                      TCGA-BC-A69I 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A115                      TCGA-DD-A116 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EG 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EK 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A4NB                      TCGA-DD-A4ND 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NH 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NI                      TCGA-DD-A4NJ 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A4NK                      TCGA-DD-A4NL 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NN                      TCGA-DD-A4NO 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A4NP                      TCGA-DD-A4NQ 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NR                      TCGA-DD-A4NS 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NV                      TCGA-DD-A73A 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A73B                      TCGA-DD-A73C 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A73D                      TCGA-DD-A73E 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A73F                      TCGA-DD-A73G 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-ED-A459                      TCGA-ED-A4XI 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-ED-A627 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-ED-A66X                      TCGA-ED-A66Y 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-ED-A7PX                      TCGA-ED-A7PY 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-ED-A7PZ                      TCGA-ED-A7XP 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-ED-A82E                      TCGA-EP-A12J 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-FV-A3I0                      TCGA-FV-A3I1 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A3R2                      TCGA-FV-A3R3 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A495                      TCGA-FV-A496 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A4ZP                      TCGA-FV-A4ZQ 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-G3-A3CK                      TCGA-G3-A5SI 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SL 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A5SM                      TCGA-G3-A6UC 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-GJ-A6C0                      TCGA-K7-A6G5 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-LG-A6GG                      TCGA-MI-A75C 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-MI-A75E                      TCGA-MI-A75G 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-MI-A75I                      TCGA-NI-A4U2 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-O8-A75V 
"DEL PEAK 28(22Q13.32) WILD-TYPE" 
[1] "hr=" "1.4"
D56V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 28(22Q13.32) MUTATED        11       13         1          9
  DEL PEAK 28(22Q13.32) WILD-TYPE      47       23         1         21
                                 vv
clus                              STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 28(22Q13.32) MUTATED            1          2        0         0
  DEL PEAK 28(22Q13.32) WILD-TYPE          3          3        1         1
                                 vv
clus                              STAGE IVB
  DEL PEAK 28(22Q13.32) MUTATED           0
  DEL PEAK 28(22Q13.32) WILD-TYPE         2
D56V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 28(22Q13.32) MUTATED   11 16 11  3
  DEL PEAK 28(22Q13.32) WILD-TYPE 50 24 29  5
D56V4, multiclass
    clus
vv   DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE
  T1                            11                              50
  T2                            16                              24
  T3                            11                              29
  T4                             3                               5
D56V5, binary
                                 cls
clus                               0  1
  DEL PEAK 28(22Q13.32) MUTATED   25  1
  DEL PEAK 28(22Q13.32) WILD-TYPE 72  2
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(22Q13.32) MUTATED     25    1
  DEL PEAK 28(22Q13.32) WILD-TYPE   72    2
   clus
vv  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE
  0                            25                              72
  1                             1                               2
                                 vv
clus                              M0 M1 MX
  DEL PEAK 28(22Q13.32) MUTATED   35  0  6
  DEL PEAK 28(22Q13.32) WILD-TYPE 80  3 25
D56V6, multiclass
    clus
vv   DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE
  M0                            35                              80
  M1                             0                               3
  MX                             6                              25
D56V7, binary
                                 cls
clus                               0  1
  DEL PEAK 28(22Q13.32) MUTATED   18 23
  DEL PEAK 28(22Q13.32) WILD-TYPE 40 68
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(22Q13.32) MUTATED     18   23
  DEL PEAK 28(22Q13.32) WILD-TYPE   40   68
        clus
vv       DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE
  FEMALE                            18                              40
  MALE                              23                              68
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 28(22Q13.32) MUTATED   32  5  0  3
  DEL PEAK 28(22Q13.32) WILD-TYPE 90  6  1  7
D56V8, multiclass
    clus
vv   DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE
  R0                            32                              90
  R1                             5                               6
  R2                             0                               1
  RX                             3                               7
> q(save="no")
